CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017621	Streptococcus suis D12, complete sequence	4 crisprs	DinG,csa3,cas3,DEDDh	1	2	7	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_017621_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017621_1

36983-37124

Orphan

Consensus_repeat	Method
CGCGACAGGAAAAAATGAGCCAGCCAAGCTGGAGCAGGTAGGGGCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017621_1

>merge|NC_017621|1|36983-37124|CRISPRCasFinder
CGCGACAGGAAAAAATGAGCCAGCCAAGCTGGAGCAGGTAGGGGCGGGGGGGGGGGGAGGGGGGGGGGGAGCCACTTTACTTCCTCGACTACAGCGCGACAGGAAAAAATGAGCCAGCCAAGCTGGAGCAGGTAGTGGCGGG

>NC_017621|1|1|36983-37124|CRISPRCasFinder
CGCGACAGGAAAAAATGAGCCAGCCAAGCTGGAGCAGGTAGGGGCGGG	GGGGGGGGGAGGGGGGGGGGGAGCCACTTTACTTCCTCGACTACAG
CGCGACAGGAAAAAATGAGCCAGCCAAGCTGGAGCAGGTAGTGGCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017621.1\|WP_014637252.1\|28526_29309_+\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|273175
NC_017621.1\|WP_014637258.1\|38325_38907_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240606
NC_017621.1\|WP_014637248.1\|23521_24358_+\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NC_017621.1\|WP_002935337.1\|26306_27275_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|167353
NC_017621.1\|WP_014637262.1\|42146_43073_+\|type-II-restriction-endonuclease	unknown	unknown	gnl\|CDD\|377384
NC_017621.1\|WP_014637251.1\|27361_28540_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235985
NC_017621.1\|WP_014637257.1\|37772_38333_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NC_017621.1\|WP_029750015.1\|41353_42169_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NC_017621.1\|WP_014637253.1\|29305_30313_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NC_017621.1\|WP_014637265.1\|45385_45874_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NC_017621.1\|WP_041179240.1\|40533_41364_+\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|273146
NC_017621.1\|WP_014637263.1\|43072_43978_+\|type-II-restriction-endonuclease-LlaDCHI	unknown	unknown	gnl\|CDD\|377384
NC_017621.1\|WP_014637264.1\|44097_45360_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NC_017621.1\|WP_014637259.1\|38920_40468_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_017621.1\|WP_014637254.1\|30305_30554_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|183533
NC_017621.1\|WP_014637266.1\|45860_46946_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NC_017621.1\|WP_014637250.1\|24947_26204_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226400
NC_017621.1\|WP_014637255.1\|30671_31379_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
NC_017621.1\|WP_015646212.1\|24347_24863_+\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|282013
NC_017621.1\|WP_014637256.1\|35148_36603_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984

Protein	Function_ID	Function_description	E-value
NC_017621.1\|WP_014637252.1\|28526_29309_+\|DNA-repair-protein-RecO	gnl\|CDD\|273175	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	9.66941e-78
NC_017621.1\|WP_014637258.1\|38325_38907_+\|hypothetical-protein	gnl\|CDD\|240606	cd12870, MqsA, antitoxin MqsA for MqsR toxin. This family includes domains similar to the antitoxin MqsA that binds motility quorum-sensing regulator MqsR, a toxin that is highly upregulated in persisters (dormant cells found in biofilms that are a source of antibiotic resistance), thus forming a unique toxin:antitoxin (TA) pair. MqsA neutralizes MsqR toxicity. It binds its own promoter as well as those of genes important for E. coli physiology, such as mcbR and spy. It also binds zinc and has been shown to coordinate DNA via its C-terminal domain. This family also includes the B. subtilis YokU protein, which is functionally uncharacterized.	0.00457639
NC_017621.1\|WP_014637248.1\|23521_24358_+\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	2.67879e-53
NC_017621.1\|WP_002935337.1\|26306_27275_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|167353	PRK02269, PRK02269, ribose-phosphate diphosphokinase.	0
NC_017621.1\|WP_014637262.1\|42146_43073_+\|type-II-restriction-endonuclease	gnl\|CDD\|377384	pfam04556, DpnII, DpnII restriction endonuclease. Members of this family are type II restriction enzymes (EC:3.1.21.4). They recognize the double-stranded unmethylated sequence GATC and cleave before G-1. http://rebase.neb.com/rebase/enz/DpnII.html.	9.48676e-108
NC_017621.1\|WP_014637251.1\|27361_28540_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235985	PRK07309, PRK07309, pyridoxal phosphate-dependent aminotransferase.	0
NC_017621.1\|WP_014637257.1\|37772_38333_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	1.16348e-103
NC_017621.1\|WP_029750015.1\|41353_42169_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	5.10985e-67
NC_017621.1\|WP_014637253.1\|29305_30313_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	2.59586e-174
NC_017621.1\|WP_014637265.1\|45385_45874_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.15918e-86
NC_017621.1\|WP_041179240.1\|40533_41364_+\|DNA-adenine-methylase	gnl\|CDD\|273146	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems. [DNA metabolism, DNA replication, recombination, and repair].	7.68938e-89
NC_017621.1\|WP_014637263.1\|43072_43978_+\|type-II-restriction-endonuclease-LlaDCHI	gnl\|CDD\|377384	pfam04556, DpnII, DpnII restriction endonuclease. Members of this family are type II restriction enzymes (EC:3.1.21.4). They recognize the double-stranded unmethylated sequence GATC and cleave before G-1. http://rebase.neb.com/rebase/enz/DpnII.html.	3.9755e-98
NC_017621.1\|WP_014637264.1\|44097_45360_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NC_017621.1\|WP_014637259.1\|38920_40468_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_017621.1\|WP_014637254.1\|30305_30554_+\|acyl-carrier-protein	gnl\|CDD\|183533	PRK12449, PRK12449, acyl carrier protein; Provisional.	3.3013e-17
NC_017621.1\|WP_014637266.1\|45860_46946_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0
NC_017621.1\|WP_014637250.1\|24947_26204_+\|CHAP-domain-containing-protein	gnl\|CDD\|226400	COG3883, COG3883, Uncharacterized protein conserved in bacteria [Function unknown].	3.07447e-51
NC_017621.1\|WP_014637255.1\|30671_31379_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	1.91603e-144
NC_017621.1\|WP_015646212.1\|24347_24863_+\|rod-shape-determining-protein-MreD	gnl\|CDD\|282013	pfam04093, MreD, rod shape-determining protein MreD. MreD (murein formation D) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped.	0.00100118
NC_017621.1\|WP_014637256.1\|35148_36603_+\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0

>NC_017621.1|WP_014637256.1|35148_36603_+|amidophosphoribosyltransferase
MTYEVKSLNEECGVFGIWGHPQAAQVTYFGLHSLQHRGQEGAGILANDGGHLRRHRGTGLIAEVFKNPADLEALTGTAAIGHVRYATSGSASINNIQPFLFDFADMQVGLAHNGNLTNAVSLKAELEKNGSIFSSSSDTEILMHLIRRSHNPDFMGKIKEALNTVKGGFAYLIMLEDKLVAALDPNGFRPLSIGKMKNGAWVVASETCAFEVVGADWVRDVEPGEIVVIDDSGIQYDSYTRDTQLAVCSMEYVYFARPDSVIHGVNVHTARKNMGRRLAQEFQQEADIVVGVPNSSLSAAMGFAEESGLPNEMGLIKNQYTQRTFIQPTQELREQGVRMKLSAVSSVVKGKRVVMIDDSIVRGTTSRRIVQLLRDAGAKEVHVAIGSPELKYPCFYGIDIQTRRELISANHTVEEVCEIIGADSLTYLSLEGMIEAIGIETDAPKGGLCVAYFDGEFPTPLYDYEEEYLRSLEEKTSFYIENVK
>NC_017621.1|WP_014637255.1|30671_31379_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MKTDLLYSGKAKDIYATADSDQIVAVYKDQATAFNGGKKEQIVGKGRLNNLISSLIFEKLNEAGVPTHFIKRLSDSEQLNKKVEIIPLEVVLRNVTAGSFSKRFGVEEGIALPTPIVEFYYKKDELDDPFINDEHIAFLELASQDQIAYIKEETRRINEFLKDLFAQIGLTLVDFKLEFGVDSSGQILLADEFSPDNCRLWDADGNHLDKDVFRRGLGELTEVYEVVLAKLQEVK
>NC_017621.1|WP_014637254.1|30305_30554_+|acyl-carrier-protein
MTREQVYQRVVELIQDEKGEDFQVQPESTLADNIAADSVEIMEFVLNLEDEFHVDVPDAAIEHFEVLSDIVDFIYEEVKKRS
>NC_017621.1|WP_014637253.1|29305_30313_+|phosphate-acyltransferase-PlsX
MKRIAVDAMGGDHAPQAVVEGVNQALAAFPDIEIQLYGDEAKIKQYLTVTERVSIVHTTEKINSDDEPVKAIRRKKEASMVLATKAVKDGQADAVLSAGNTGALLAAGVFVVGRIKNIDRPGLMSTLPTMDGKGFDMMDLGANAENTAHHLYQYGILGSFYAEHVRGVKQPRVGLLNNGTEDTKGTPVHQEAYKLLAEDKSINFIGNVEARELLNSVADVVVTDGFTGNAVLKTVEGTAKSIVGQLTGSIKSGGLRAKLGGLLVKPTLKKALGAMDYKTAGGAVLLGLKAPVIKAHGSSDAQSIFYTIKQTRSILEAGIVEKSVAKFSVVEESHD
>NC_017621.1|WP_014637252.1|28526_29309_+|DNA-repair-protein-RecO
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKNINGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGISLNFHECAFCHRVGLPFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFIDDLSSWGQIMKPRTENEETE
>NC_017621.1|WP_014637251.1|27361_28540_+|pyridoxal-phosphate-dependent-aminotransferase
MDLLNRFNKNLNRIEVSMIRQFDQSISDVPGILKLSLGEPDFTTPDHVKEAAKAAIDANKSYYTGMAGLLELRQAAAEFVAEKYNLHYNPENEILSTIGATEALSASLVAILEAGDTVLLPAPAYPGYEPIVNMVGADIVEIDTTANDFVLTPEMLEEAIIEQGDKLKAVILNYPANPTGVTYSREQIQAFADVLRKYPVFVLSDEVYAELTYTGQPHTSIAEFLPEQTILIQGLSKSHAMTGWRIGLIMSQAPIIAQIIKSHQYLVTAASTAMQYGAVEALKNGKDDALPMRAEYVKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQDSFSFLQDFARKKAVAFIPGAAFGQYGEGYVRISYAASMEKIQTAMARLKEYLEENGTN
>NC_017621.1|WP_002935337.1|26306_27275_+|ribose-phosphate-diphosphokinase
MAFTDLKLFALSSNQKLAEQVSKKIGIPLGKSSVRQFSDGEIQVNIEESIRGTHVYILQSTSSPVNDNLMEILIMVDALKRASAESVNVVMPYYGYARQDRKARAREPITSKLVANMLQTAGVNRLLTIDLHAAQIQGFFDIPVDHLMGAPLIADYFERRGMVGDGYVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGDIKDKTCILIDDMIDTAGTICHAADALADAGATAVYASCTHPVLSGPAMDNISKSAIKKLVVLDTIEIAEDRLIDKIEHISTAELLAEAIIRIHEKRPLSPLFEASRVK
>NC_017621.1|WP_014637250.1|24947_26204_+|CHAP-domain-containing-protein
MKKKILATIMLSTVVLSNANYVAVISANDVDSQIAAKNQQISELTAQQAEAQQQVDAIQGQVDAIVSEQAKLTEENTRLEAESQTLAADIERLSADIVSRDGALKEQARSAQVDGSASSYINTILDSKSIVDAVSRVNAMREIVSANNRMLEQQKADKEAIVEKQKANQEAITTLAANRQKLEDDAQVLQVRQAELEAAKLNLAVQKATAEDEKNSLLAQKAAAEEAARQAAARQAEYQAQQAALAQQQVASVSAPVVSTPVETTVTETVAAPTQTVSQSTPTVSTPTTSTSSGSGSSAAANNARYDASSYPVGECTWGVKSQLSWVGPYWGDAKQWLASARAEGFSTGSTPQVGAIAVWTGGYYGHVAVVTAVQSSTSIQVVESNYMGRRYIGNHRGGYFNPTTTSEGAVYYIYSPY
>NC_017621.1|WP_015646212.1|24347_24863_+|rod-shape-determining-protein-MreD
MRNKMIEIFMFPILFFILLLDGQISTLVTNWSVGLFTISSHLVLMLAIFYANYVSLGFSLFIFTLLGLVYDISYLNLIGIATTTLPLVLYCIYFFFQGAVSKRGINILILLVAIFQFEFISYSFARIFHITNLSVFIFVFNKLLPSLLFNLALFFVLQPLFERLFGITNKT
>NC_017621.1|WP_014637248.1|23521_24358_+|rod-shape-determining-protein-MreC
MNKFSKLVVVVSIFLLLSFSLLFVTFSKGLQVPYLNNIVRVVVTPIQSVISVPTRFFSEQKDVLTDLMNAYEENKQLKEAIMSLEGMAAENTSLKEENASLRSSLGVVSDFPEKQLIPGSVLVRTPSSWSEHISINIGETSGVTSNALVVANGGLVGIVSSLSSDSAVVTLFTNSDEFTKLPVKISVDSKEIYGILSGYDADTNSFIINQLNSADEIAVGSNVVTSDLAGATPANVQIGKVLSVKSNSNSLNREVYVEPTASFSNIYSVLVVGQTNAQ
>NC_017621.1|WP_014637257.1|37772_38333_+|phosphoribosylglycinamide-formyltransferase
MKQIAVFASGNGSNFQVIAEQFEVIFVFSDRRNAYVLERAEKLGVPAFAFELKEFADKQAYEEALTQLLDQHQIDLVVLAGYMKIVGPTLLAQYEGRIINIHPAYLPEFPGAHGIEDAWQAGVSESGVTVHWVDSGVDTGQIIKQVRVPRLAEDTLETFEARIHEAEYQLYPAVLEELGVVRRDYE
>NC_017621.1|WP_014637258.1|38325_38907_+|hypothetical-protein
MNNSFNNWNNNAGGDINIQINQNQPETIATYEPEPIWRSPITMAVLSWLGFFGSLGSIFSIFKVFEPVLKWLNGKQEEIGNNQTYMFVFIGFFLITIIIFSLRSITSKQTRYPLMFNYAISGGGKRLTLEKIKIDNCPICNGKMKFFNKPIEFKEITYSDGKTKTEVIKRTPALQCIRNPEHWFKVDPAEDKI
>NC_017621.1|WP_014637259.1|38920_40468_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MTKRSLISVSDKAGIVEFAQELTKLGWEIISTGGTKVALNQAGVTTIAIDDVTGFPEMMDGRVKTLHPKIHGGLLARRDLDSHLQAANDHEIGLIDLVVVNLYPFKETILRPDVTYDLAVENIDIGGPSMLRSAAKNHASVTVVVDPTDYPTVLGEIAEQGETTYSTRQRLAAKVFRHTAAYDALIADYFTKQVGEDKPEKLTITYDLNQPMRYGENPQQNADFYQNALPTDYSIAAAKQLNGKELSFNNIRDADAAIRIIRDFKDRPTVVALKHMNPCGIGQAETIEQAWDYAYEADPVSIFGGIVVLNREVDAATAEKMHPIFLEIIIAPSYSAEALAILTNKKKNLRILELAFDAQNASEVEKEFTGVVGGLLVQDQDVVVESPADWQVVTERQPSEQEWAAMEFAWKSSKYVKSNGIIITNDKMTLGVGPGQTNRVASVRIAIEQAKDRLEGAVLASDAFFPFADNVEEIAAAGIKAIIQPGGSVRDQDSIDMANKYGLTMVFTGVRHFRH
>NC_017621.1|WP_041179240.1|40533_41364_+|DNA-adenine-methylase
MTLKPFTKWTGGKRKLLTQLHEHIPFEYNRYFEPFVGGGALFFDLAPENAVINDFNEELINTYLQIRDNPEALLDLLHIHRENNSKEYYLNVRSVDRDGRIETMSDVERAARILYMLRVNFNGLYRVNSKNQFNVPYGRYKNPKIVDSELIQRASRYLNDNNILIMHGDFATAVEEAVAGDFVYFDPPYVPLTATSSFTSYTHEGFSDQDQRRLRDTFVDLDRRGVNVMLSNSSSPVVEELYAGFNISRVDVSRTNGASNSSRGKIQEIIVRNYGE
>NC_017621.1|WP_029750015.1|41353_42169_+|site-specific-DNA-methyltransferase
MANNEYKYGGVLMNKPYYHKNKAILVHADTFEFLDKMKPESMDMIFADPPYFLSNGGISNSGGQVVSVDKGDWDKVNSLEEKHEFNRKWIRLAKNVLKPNGTIWISGSFHNIYSVGMALEQEGFKILNNITWQKTNPAPNLSCRYFTHSTETILWARKDDKKARHYYNYELMKELNDGKQMKDVWVGGLTKKSEKWAGKHPTQKPEYLLERIILASTREGDYILDPFVGSGTTGVVAKRLGRKFIGIDAERDYLKIARTRLDKEDGKKNFS
>NC_017621.1|WP_014637262.1|42146_43073_+|type-II-restriction-endonuclease
MARRTFHSWFETFTDTVADWNYYVDFTKVFNNMNDLYLRTNLNILNTLVGSKKIREDFIAICDKYPDVLTVIPILLAVRLESKGRGENRKPIALPIREYGDDAIKRYDFDFYSPNYAIENYADLLENTGVFELLQSHLVKNVQDYVYGVEVGLDSNGRKNRMGKTMEALVERELQNAGLEEKTDYYKQIRTGEIESLFHIDLSSITNNGKNHKKFDFVIQINDQLYLVEVNFYSKSGSKPNETTRSYENLAEKLTEISNVHFVWITDGEGWQRSKSNLEEAFERIPRLYNLHDIRNKNIKELLEVEMD
>NC_017621.1|WP_014637263.1|43072_43978_+|type-II-restriction-endonuclease-LlaDCHI
MNLQAYINLSADERLKIFLSTLSVTNRTPDYYVNWSKVERETKKYELELNTLNYLIGKDDIYNEALELFNKQPNLLKAIPSLIASRDKTLDILSIDADDNMSFDNLDFAIIDEDRIVDYTNFVDATGLLGFLQKKANRSLVDYVYGVEAGLDSNARKNRSGTTMEGILERTVARVCKEYGLEFKAQATAPFIKDNWGIEVPVDKSERRFDVAVFSKDKHKLWLIETNYYGGGGSKLKAVAGEFTELSQFVTKTTDDINFVWVTDGQGWKTAHIPLEEAFGHIIHVFNLDMLKQGYLYDLFR
>NC_017621.1|WP_014637264.1|44097_45360_+|phosphoribosylamine--glycine-ligase
MKLLVVGSGGREHAIAKKLLESEQVEQVFVAPGNDGMTLDGIELVNIGISEHSALINFAKENDIAWTFVGPDDALAAGIVDDFEQAGLKAFGPSRLAAELEWSKDFAKQIMVKYGIPTAAFGTFSNFEEAKAYIEEQGAPIVVKADGLALGKGVVVAETVEQAVEAAREMLLDNKFGDSGARVVIEEFLAGEEFSLFALVNGDQFYILPTAQDHKRAFDGDQGPNTGGMGAYAPVPHLPQSVVDTAVDTIVKSILDGMIAEGRSYLGVLYAGLILTDQGPKVIEFNARFGDPETQIILPRLTSDFAQNINDILHKRPTQLTWLDSGVTLGVVVASNGYPLDYEKGVELPAKTEGDITTYYAGARFAENSRALLSNGGRVYMLVTTADTVQEAQEKIYSELKKQDTTGLFYRTDIGSKAVK
>NC_017621.1|WP_014637265.1|45385_45874_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MNIPISIIMGSSSDWKTMKKAADVLDKFGVAYEKKVVSAHRTPDLMFRHAEEARGRGIKVIIAGAGGAAHLPGMVAAKTTLPVIGVPVQSRALSGVDSLYSIVQMPGGVPVATMAIGEAGATNAALTALRILSIEDQTIATQLVDFAKEQEKIAEAMTDDLI
>NC_017621.1|WP_014637266.1|45860_46946_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MTSYKTIGIIGGGQLGQMMAISAIYMGHKVITLDPAADCPASKVSEVIVAPYHNVAALKQLAERCDVLTYEFENVDADGLDAVIKDGQLPQGTDLLRISQNRIFEKDFLAKKAGVQVAPYKVVTSSLDLEGLDLSKNYVLKTATGGYDGHGQKVIREEADLVEASQLANSAECVLEEFVNFDLEISVLVSGNGSDYTVFPVQENIHRNNILYKTIVPARISDELAEKAKTMALQIADKLHLAGTLCVEMFVAGQDILVNEIAPRPHNSGHYSIEACDFSQFDTHIRGILGQPLPPIRLLSPAVMINVLGQDMEAVQTFLQENPTAHPHFYGKLEAKHNRKMGHVTVLGEEMIKNICKNLSP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017621_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017621_2

671094-671211

Orphan

Consensus_repeat	Method
GATTTACGTTGGTATGAAGCCACTCGTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017621_2

>merge|NC_017621|2|671094-671211|CRISPRCasFinder
GATTTACGTTGGTATGAAGCCACTCGTCAAATGTTTCATCACCGAAAGATATAGCGAGTGTTATCTTACCCACTTGGTTCCAGTCAGACGATTTACGTTGGTATGAAGCCACTCGTCA

>NC_017621|2|2|671094-671211|CRISPRCasFinder
GATTTACGTTGGTATGAAGCCACTCGTCA	AATGTTTCATCACCGAAAGATATAGCGAGTGTTATCTTACCCACTTGGTTCCAGTCAGAC
GATTTACGTTGGTATGAAGCCACTCGTCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017621.1\|WP_014637738.1\|682727_683987_+\|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240533
NC_017621.1\|WP_014637722.1\|664156_664981_+\|ZIP-family-metal-transporter	unknown	unknown	gnl\|CDD\|223505
NC_017621.1\|WP_014637734.1\|677997_678927_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133039
NC_017621.1\|WP_014637733.1\|676852_678001_+\|DUF1972-domain-containing-protein	unknown	unknown	gnl\|CDD\|340858
NC_017621.1\|WP_014637725.1\|666540_667026_+\|phosphoribosylanthranilate-isomerase	unknown	unknown	unknown
NC_017621.1\|WP_014637728.1\|668328_669180_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NC_017621.1\|WP_014637727.1\|667227_668274_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NC_017621.1\|WP_014637731.1\|673645_674032_+\|glucosaminidase	unknown	unknown	gnl\|CDD\|224619
NC_017621.1\|WP_014637721.1\|663187_663982_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614
NC_017621.1\|WP_014637724.1\|665947_666541_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|380337
NC_017621.1\|WP_024385623.1\|662514_663198_+\|tRNA-(adenine-N(1))-methyltransferase	unknown	unknown	gnl\|CDD\|225258
NC_017621.1\|WP_014637739.1\|683983_685291_+\|DUF2142-domain-containing-protein	unknown	unknown	gnl\|CDD\|370749
NC_017621.1\|WP_014637719.1\|661838_662513_+\|DnaD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226445
NC_017621.1\|WP_014637736.1\|679735_680950_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057
NC_017621.1\|WP_014637735.1\|678929_679736_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224596
NC_017621.1\|WP_014637729.1\|669196_670240_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	unknown
NC_017621.1\|WP_014637737.1\|680970_682695_+\|rhamnan-synthesis-protein-F	unknown	unknown	gnl\|CDD\|377447
NC_017621.1\|WP_014637723.1\|665078_665948_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NC_017621.1\|WP_014637732.1\|674090_676640_-\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|293739
NC_017621.1\|WP_014637740.1\|685313_686303_+\|glycosyltransferase-family-8-protein	unknown	unknown	gnl\|CDD\|133037

Protein	Function_ID	Function_description	E-value
NC_017621.1\|WP_014637738.1\|682727_683987_+\|lipopolysaccharide-biosynthesis-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.23686e-18
NC_017621.1\|WP_014637722.1\|664156_664981_+\|ZIP-family-metal-transporter	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	4.90089e-63
NC_017621.1\|WP_014637734.1\|677997_678927_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133039	cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	3.24197e-87
NC_017621.1\|WP_014637733.1\|676852_678001_+\|DUF1972-domain-containing-protein	gnl\|CDD\|340858	cd04955, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found in certain bacteria and Archaea.	0
NC_017621.1\|WP_014637728.1\|668328_669180_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	1.04877e-130
NC_017621.1\|WP_014637723.1\|665078_665948_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_017621.1\|WP_014637731.1\|673645_674032_+\|glucosaminidase	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	2.94982e-40
NC_017621.1\|WP_014637721.1\|663187_663982_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	6.75746e-83
NC_017621.1\|WP_014637724.1\|665947_666541_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|380337	cd00438, cupin_RmlC, RmlC carbohydrate epimerase, involved in dTDP-L-rhamnose production. RmlC (deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-D-hexulose 3, 5-epimerase or dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; also known as RfbC) is a carbohydrate epimerase involved in the production of dTDP-L-rhamnose, a precursor of the bacterial cell wall constituent, L-rhamnose. L-Rhamnose (6-deoxy-l-mannose) plays an important role in the cell-wall structure of many bacterial species. It has been found to contribute to the virulence of several species, including the Gram-negative Salmonella enterica and Vibrio cholerae, where it is present as a part of the O-antigen, and is essential for the growth of Gram-positive bacteria such as Streptococcus pyogenes. RmlC converts dTDP-6-deoxy-D-xylo-4-hexulose to dTDP-6-deoxy-L-xylo-hexulose by catalyzing the epimerization of the 5-methyl and 3-hydroxyl groups of hexulose, the third of four steps in the dTDP-L-rhamnose biosynthetic pathway. RmlC belongs to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.11269e-52
NC_017621.1\|WP_024385623.1\|662514_663198_+\|tRNA-(adenine-N(1))-methyltransferase	gnl\|CDD\|225258	COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only].	1.03721e-91
NC_017621.1\|WP_014637739.1\|683983_685291_+\|DUF2142-domain-containing-protein	gnl\|CDD\|370749	pfam09913, DUF2142, Predicted membrane protein (DUF2142). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.07442e-75
NC_017621.1\|WP_014637719.1\|661838_662513_+\|DnaD-domain-containing-protein	gnl\|CDD\|226445	COG3935, DnaD, Putative primosome component and related proteins [DNA replication, recombination, and repair].	2.67903e-68
NC_017621.1\|WP_014637736.1\|679735_680950_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.77102e-115
NC_017621.1\|WP_014637735.1\|678929_679736_+\|ABC-transporter-permease	gnl\|CDD\|224596	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	1.06327e-49
NC_017621.1\|WP_014637737.1\|680970_682695_+\|rhamnan-synthesis-protein-F	gnl\|CDD\|377447	pfam05045, RgpF, Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors.	9.03425e-72
NC_017621.1\|WP_014637727.1\|667227_668274_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NC_017621.1\|WP_014637732.1\|674090_676640_-\|LTA-synthase-family-protein	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	4.82685e-67
NC_017621.1\|WP_014637740.1\|685313_686303_+\|glycosyltransferase-family-8-protein	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	4.16526e-73

>NC_017621.1|WP_014637729.1|669196_670240_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKKKAIVKPLLTSAILLALLGGAILPSGAVPVVAAETSQSTTYHLTDDEKVAVREYIQAKMAIDMQEYRLAFLEGMMEEMASGSAEATWDEEIADLKASLTAEQVVVLDELKANLIGSIAQHYHYLFETLTVAGKSGREEAAAIVSRYESEEDASTPEAELAALKYAREVIVELLNKESAAIDNYIAYAEATGQELAGLLESGNSNLETITSATIGYGQALATASQPKFPYDFSEIDRQIAELTASLQSKVEDKSTANIENTGAQTSQSATNGSNDLQDVPGQGDGQISDVATGKGSISEAGQKKVIPNDKAKVLPKTSGKSGLPLTVLGLVTIFAGWLLTKKQEEK
>NC_017621.1|WP_014637728.1|668328_669180_+|dTDP-4-dehydrorhamnose-reductase
MILITGANGQLGTELRYLLDERGVEYVAADVAEMDITDADKVDAFFAEVKPSVVYHCAAYTAVDMAEDEGKELNYKINVTASENVAKAAAKYGATLVYISTDYVFNGELPVGQEWQVDDQPDPQSEYGRTKRLGEEAVEKFADKFYTVRTAWVFGNYGKNFVFTMQNLAETRDTLTVVNDQHGRPTWTRTLAEFMVHLVDTKQAFGYYHLSNDAAEDTTWFDFATEILKDTNTKVLPVDSSQFPAKAKRPFNSTMSLDKAKATGFVIPTWQEALEAFYKQEKK
>NC_017621.1|WP_014637727.1|667227_668274_+|dTDP-glucose-4,6-dehydratase
MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDIHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTNFSEGLEETIQWYTDNQDWWKAEKEAVEANYAKTQEVIK
>NC_017621.1|WP_014637725.1|666540_667026_+|phosphoribosylanthranilate-isomerase
MFQAFLEIAEQLNKLGITPLLMGSVGLERRTGRDWQARDLDIHVPSDPRGWEAPDEERIYRADELIAMMNQLGYVLVDRHEHEFHKGGLSVEFGGLHSLPEFAGVELEDLEELETAGVRYYLPTLEQYLKIYKASSKDSYRAENNNQKDFAKIAYLEEVLK
>NC_017621.1|WP_014637724.1|665947_666541_+|dTDP-4-dehydrorhamnose-3,5-epimerase
MTENFFGKTLAARPVEAIPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFSRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKGIFVPRGVANGFQVLSDFVAYSYLVNDYWALELKPKYAFVNYADPSLDIQWENLEEAEVSEADENHPLLKDVKPLRKEDL
>NC_017621.1|WP_014637723.1|665078_665948_+|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPLTRAASKQLMPIYDKPMIYYPLSTLMLAGIKDILIISTPQDLPRFKDMLGDGSELGISLSYAEQPSPDGLAQAFIIGEEFIGDDNVALILGDNIYHGNGLTKMLQRAASKEKGATVFGYQVKDPERFGVVEFDADMNAISIEEKPEEPKSNFAVTGLYFYDNDVVEIAKNIKPSPRGELEITDVNKAYLDRGDLSVELMGRGFAWLDTGTHESLLEAAQYIETVQRLQNVQVANLEEIAYRMGYITKEQVHELAQPLKKNEYGQYLLRLIGEA
>NC_017621.1|WP_014637722.1|664156_664981_+|ZIP-family-metal-transporter
MTWFTNQSVVLQALLGGLFTWFCTIVGSAVVFFFKTVSRRLLDTMLGFAAGVMIAASFWSLLAPSIEYAESSYGNLAWIPAAVGFAAGGIFLRLVDAWVPHLHLGNDKDKAEGGGEKDRKNLSKTALLFLAITIHNIPEGLAVGVTFGALASNYSPAAFIGAIGLAIGIGIQNIPEGAALAIPIRTDGASRWKAFYWGSMSAIVEPIAAVIGAFAVTFMTPILPYALSFAAGAMIFVVVEELIPESQTNGNTDIATLGLMAGFIIMMILDVALG
>NC_017621.1|WP_014637721.1|663187_663982_+|Nif3-like-dinuclear-metal-center-hexameric-protein
MLASQVIERYQAFCPPSLAMEGDVKGQQIGTLNKEIQRVMVALDIRETTVAEAIDKKVDLIIVKHAPIFRPIKDLVADNPQTKMYLDLIKHDIAVYVSHTDIDVVEGGLNDWFCELLEIQDTTYLIETAEGQGLGRVGTIAEQTLEELALKIKSVFSLDAVRLVTYGQQAKQYVNRVAICGGSGGSYYHEALAKGADVYITGDIYYHTGQDMLTQGLLAIDPGHHIEALFIKKIAELLEIWKVKEGWDVEILPSTVSTNPFRHL
>NC_017621.1|WP_024385623.1|662514_663198_+|tRNA-(adenine-N(1))-methyltransferase
METKLSKRLETVASFVPQGARLVDVGSDHAYLPLFLVEQGRIDFAIAGEVVQGPYQSALQNVEQAGQTEKILVRLANGLGAFETSDQMTAVTIAGMGGRLIAEILEAGKEKLATIERLILQPNNREDDVRRWLEKNGFRLVAEKILEENGKLYEVLVAESGQMRLSEVEHRFGPYLLEEASPVFVKKWRRELEKLSSALEQVPSERQGDRFAISQKIQQIQEVVHVS
>NC_017621.1|WP_014637719.1|661838_662513_+|DnaD-domain-containing-protein
MNYSQQFRQGHLVLPAAILFHYQELFPSADDFLIWQFFFYQNSSAIESLAPSEIAQATGKTVAQVNQAIENLQDAGLLEFKTISIAGEIEMIFDALPAFEKLDVLLTPKQAVEIVQPENDLKTLVGDFERELGRFLSPFEIEDLQKTIEDDKTSIDLVRAALKEAVFNNKTNWKYIQAILRNWRREGITTVAQVEAKNAEREIQTPKNVTVSSDFLDAMDLWKD
>NC_017621.1|WP_014637731.1|673645_674032_+|glucosaminidase
MLSQAILESAWGTSYLATHGNNLFGIKADAAWTGDTIEIITNEYRDGEKKQEKHLFRKYNSWNESVADYAKFFTSTPWRIKNYQSFREATDYQQAILALRQSGYATDPKYGEKLLSIIENYKLYLLDN
>NC_017621.1|WP_014637732.1|674090_676640_-|LTA-synthase-family-protein
MKLIKQLIHILISIGLIGSFFLYAHLIQNELGSTKNDGMIEIIAEQPNQVIDSIQINGRYIHSSEIIENQWGINDADLIPNFSSLGEDNSLIIKSSSSVRTLSFEYFVSENPTIVKIKVGGQLVESVDTSTGDKYKNLAFIELPYTLRITKDNQFWYLHLIVLALGLSCFILNGSTWRIKRRHISILTILLITQYIFTTFTFPRLYRNELVLFNSSFNKMETQQLLVALTCLIFFSLLGYKQLRGHISKAFKTISLSVIYLLVPIFSLFIIENSYSQFSTLSPNSLWNNLIIIGVLHLILVFTTNLRFASLLILSASVFIGISNQLLIDSRGAPLLFYNLFQITDGLNVASSVAININNRMLQSMVFSYILLTFFFFIPKLYLPKLLPSRTFYSSYDFKWPKRFSRILLGYITLITIVPMINKTVVSNANISLNYWRMYVTYGQFGLPLSLASFYEDSKITKPEGYSLPKLNEVLEKYSPEPERQTIRPNIIFIQNESQSDFSNLQGLNMEPDPLSNQHALTDNTVHGTLNVSVFGGGTANTEYEVLTSNPISLLSSNLFPYQQIITQERPSFATYLKNKNYDTVALHPQSGNNYNRNAVYPLLGFNKSYFLDSEPAISSLAPLTIDRGWPSDQFLFNGIKELYTQKGDQPLFSFVVTMQGHGGYPSTEEIYPREVSINGSTSEYLAETEFLTSMKRTDEAFADLITFFSTYKEPTVIVMYGDHQPSLTQEFYAQFMDENNPAAKYSTPLVIWSNFDIRERESTTISPNYLVPYLMDILSESDYALPRSPYQQFLSDMQIEAPIITSWGNIDNNGQQIEDISNLSLYQTYLQLEYNSAVDKRPLTNLYE
>NC_017621.1|WP_014637733.1|676852_678001_+|DUF1972-domain-containing-protein
MKHVFIIGSRGLPAKYGGFETFVQQLVSHQQSEKICYHVACLSDTSHYQHSTYLGADCFTINPPKLGPARVIAYDMMAITYALKIIKEQQIERPIFYILGNTIGGFIVPFAKQIHSVGGTLFVNPDGLEWKRAKWAKPVQKYLKFSEKMMVKYADLIIADNEGIEDYIQSEYSATNTRFIAYGTDLSPTKLTKESEQVRQYFTNWNIKEKEFYLIIGRFVPENNYVTAIKEFMASNTRRDLVIVANHEGSAYFQKLKDETGFISDKRIKFVGTVYDQELLKYLRQECRAYIHGHEVGGTNPSLLEALAQTNENLVLGVDFNRKVALEGARYWSKESGSLSQLINQIDENAEAVELGEIAKKHMKDEYTWEKIVQEYEELFLQ
>NC_017621.1|WP_014637734.1|677997_678927_+|glycosyltransferase-family-2-protein
MKVNILMSTYNGQQFLAEQIRSIQEQTYTDWTLFIRDDGSSDRTREIIKDFVEQDQRISFIDVETDENLGVIKSFHRLVHCDTADFYFFSDQDDVWLPNKLEVSLKKAQAYPTNLPLMVYMDLKVVNQNLEVMAESMVKSQSHHANTELVQELTENTVTGGVAMINHHLAEMWQVTEDILMHDWYLALLASAFGNLVFIDQPGELYRQHSDNVLGARTLSKRFKKWIRPHILFAVYWDLIKNSQKQARHLLQMPLSQSNRELIEAFVTIMDKPMLERFRILRKYGLRKNKTFHTLAFTTLIVTKFAYKE
>NC_017621.1|WP_014637735.1|678929_679736_+|ABC-transporter-permease
MNLLNKENQILLREMIKTDFKLRYQGSLIGHLWSILKPLLLFTIMYLVFVRFLRFDDGTPHYAVSLLLGMVTWNFFTEATNMGMMSIVSRGDLLRKLNFSKEIIVFSSVAGAAINYAINLMVVFVFAAINGVPFTWSVLVIIPLFFELALLATGIAFILSSLFVRFRDIGPIWEVFLQAGLYATPIIYSLTFILQRGQVTFAKLMMLNPVAQIIQDLRHFIVYSGNTTVSELIENPVIVAIPYILPVVVYLLGITVFRKNAKKFAEIL
>NC_017621.1|WP_014637736.1|679735_680950_+|ABC-transporter-ATP-binding-protein
MVKNNNIAVKVEHVSKSFKLPTESSQSLRTTLVNLFKGIKGYVEYNVLQDISFEVEKGDFFGIVGRNGSGKSTLLKILSQIYVPERGTVAGDGKLVSFIELGVGFNPELTGKENVYLNGAMLGFTAEEIDAMYDDIVEFAELSEFMNQKLKNYSSGMQVRLAFSVAIKAQGDILILDEVLAVGDEAFQRKCNDYFLERKKSGKTTILVTHDMGAVKKYCNKALLIEKGYVKALGEPDDVANQYSFDNVLASISEVTENEEPLHQSDIVKDLQINLVSKNQIEPDESIEIEFRYTVLEDIETHIAFTFLDLERHFDVYNDNSMDLKTFGKGEKFFRVKCKLPSINQAKLKMAVSVRNSNKQPLLFAKTSDTPAIFISRKFSTDNIAEEDAATGFIQRNSQWELLD
>NC_017621.1|WP_014637737.1|680970_682695_+|rhamnan-synthesis-protein-F
MSRLLVYVHYNKYNVVSEYIYYQLKSIRSIYSDIVFVSNSHVSKDIVQYLQSERLIDFFIQRDNIGYDFAAWKEGLNQVTFYQYDSVTLMNDTCFGPLWDLEDYYSQFDSDVDVDFWGMTNHLETKIDSVVVPEHLQSYFMVFKKRILQSQAFVGFWSSVSELTDIQDVIKLYESQLTKILLSEGYSYKCVLDTSICCKTLENSNITLEYPEVILKNNVPFIKIKSFTEYPDRIYSLLHLIRMKTKYPVELIERHLRQIIIPGTSFIPQIRVSQTTETVRSSTSVLLHVHIESVSIFEEYIEELCKIADWCQLLITLPETDFSNNFSIVERYLSTYKLRAQIAKLTDELHFFETVNNYMGDAQYVAHITVKQTKEKKYSVEDIIDRYQLRKMFFTSFDAVISNFESQSNLAVVIPDLTTNQRYDRQSLREGNPELIRQLNILYESLVRTKKVDFYKVPYIIGEEVSWYWIKTEHYKKIEEKFRNIDFSKEDRLLLVPILFIYSAWDLSNDYAVVENTENVSPILEKISFSSERELRLIIEEKEFLQIGLRRTLKIISVGIVSVFKMIKKSLLKN
>NC_017621.1|WP_014637738.1|682727_683987_+|lipopolysaccharide-biosynthesis-protein
MKSKIVSPKIIFIWNLLGSVSSAAISIFLLLLVTRLLTELEADIFSFAYAVANLFVIIASFQVRDYQATDVSKKFSFSQYLATRLITITIMLLLALSYIFLSKYEFQKSVCIFLICLYRGSDALSDVFQGLFQQNARLDIAGKSLFLRNSIVILTFGIGLFITNNLLLSLIYLVISSYLFVFFFDVPNLFQFTRIIKEEINLKAIKNILSECLPLFINAFLLVTIYNQPKYALNTFFERGVIGTGVQRDFNILFMPVFSMNILLILFRPMITQLAIYRRAGDYNQFKQYQKRIVKMVVGLAVLVLVGGIVLGIPALNILYGTNLNKYWLSFIITMLGGIASTFATICDNMLTVLRKQKYLVISFAISCLLSILISNPLVEYYGILGAAITFVSSMWTWFLISLVIYLKLQKHLNWEVQE
>NC_017621.1|WP_014637739.1|683983_685291_+|DUF2142-domain-containing-protein
MKIEKLFLRLAIPFLLISIFVMPVTKVPDEATHAFMSWNILFDSPTSRDTEAMNELRAADFTYSEPEIHAVDSTEYSSLFTKIRDFSKDKLSIDFSLKSLMSTPQLIGLVVGKLLYPSYGMMVTIGRLFNTIVYIIGIYYLIKKIKYGKMTLFFVSLLPMMIQQAGSLSYDVVNYLAVVAFFVFYVNLLVDKVLTTRKFINLILLALLLYLTKANNILLLALLFFVDFEFEGILSKFNSILKWIQKRRLPILILGLGLVLLVSYLFLHNRGGVVHFVKVMINSLFINNRNDHLNGILTVGIFGYFGWFVTQLPLWLIFIDIFIFTLLLFNDGNLKISKTEGLASLFVLPVQVAIIVAGMYFAWTPTAIGPNAMISQGAQGRYFTPFLVYLFPACLMLKEQVSVSVKQKYLIRLLTGTVVINFIMYLFLIVDYYWL
>NC_017621.1|WP_014637740.1|685313_686303_+|glycosyltransferase-family-8-protein
MNILFTLNDAFVPQVAACMGSIMRTLNENDTCHFYLFSDGISQQNKEKLHQFVTDGGNKLTIVELENLESYFDFEVDTNGWASVVLARLLVDKLLPKEVDRIIYLDGDTLVLENIRELWEVDLEGKVLGMCPEPTASSERREGLNLGTYTYHNAGVLLIDLKRWRSKSIGTIIFDYYKEKNGELFANDQDALNGALKEEIKTLSITYNYFNIFDVYPYRTLEKLSRPSTFISKEEFVKIRKQPRIVHFLGEERPWRIGNKHRFRDDYVSALNQTPWSSTQFESGWQLYFFCFNLFNMVMKPFPMLRYKIITVLIPVFMKYRKIRLQKGV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017621_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017621_3

1606555-1606788

Orphan

Consensus_repeat	Method
CGCAAAATGCTTTTGCTTCATTTCTAACCTCCCAGAGTC	CRT
AACCTCCCAGAGTCACTCCACTGACTCT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_017621_3

>merge|NC_017621|3|1606555-1606788|CRT,CRISPRCasFinder
CGCAAAATGCTTTTGCTTCATTTCTAACCTCCCAGAGTCACTCCACTGACTCTTTGGCGCAAAATGCTTTTGAATCAAATGTGGCAGATATCATGGAAAAATACTAAAGCTTCTCCCTCTTTGACGCAAAATGCTTTTGCTTCATTTCTAACCTCCCAGAGTCACTCCACTGACTCTTTGACGCAAAATACTTTTGCTTCATTTCCAACCTCCCAGAGTCACTCCCCTGACTCT

>NC_017621|3|1|1606555-1606774|CRT
CGCAAAATGCTTTTGCTTCATTTCTAACCTCCCAGAGTC	ACTCCACTGACTCTTTGG
CGCAAAATGCTTTTGAATCAAATGTGGCAGATATCATGG	AAAAATACTAAAGCTTCTCCCTCTTTGA
CGCAAAATGCTTTTGCTTCATTTCTAACCTCCCAGAGTC	ACTCCACTGACTCTTTGA
CGCAAAATACTTTTGCTTCATTTCCAACCTCCCAGAGTC

>NC_017621|3|3|1606704-1606788|CRISPRCasFinder
AACCTCCCAGAGTCACTCCACTGACTCT	TTGACGCAAAATACTTTTGCTTCATTTCC
AACCTCCCAGAGTCACTCCCCTGACTCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017621.1\|WP_002936249.1\|1607228_1607825_-\|YpmS-family-protein	unknown	unknown	gnl\|CDD\|378302
NC_017621.1\|WP_002936253.1\|1608622_1609456_-\|DegV-family-protein	unknown	unknown	gnl\|CDD\|273257
NC_017621.1\|WP_002936251.1\|1607796_1608630_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|239947
NC_017621.1\|WP_002936269.1\|1613314_1613530_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
NC_017621.1\|WP_014638451.1\|1609549_1611211_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NC_017621.1\|WP_014638440.1\|1600962_1601157_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NC_017621.1\|WP_014638453.1\|1612445_1613315_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NC_017621.1\|WP_153308532.1\|1602056_1602218_-\|hypothetical-protein	unknown	unknown	unknown
NC_017621.1\|WP_002936261.1\|1611213_1611639_-\|arginine-repressor	unknown	unknown	gnl\|CDD\|224355
NC_017621.1\|WP_014638452.1\|1611631_1612453_-\|TlyA-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|224110
NC_017621.1\|WP_014638437.1\|1599101_1599569_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_017621.1\|WP_014638446.1\|1604354_1604714_+\|STAS-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379507
NC_017621.1\|WP_014638454.1\|1613504_1614848_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
NC_017621.1\|WP_014638445.1\|1603439_1604339_+\|ATP-binding-region,-ATPase	unknown	unknown	unknown
NC_017621.1\|WP_041179227.1\|1600571_1600883_-\|hypothetical-protein	unknown	unknown	unknown
NC_017621.1\|WP_002936247.1\|1606863_1607139_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259853
NC_017621.1\|WP_014638444.1\|1602668_1603436_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225484
NC_017621.1\|WP_041179226.1\|1600287_1600575_-\|hypothetical-protein	unknown	unknown	unknown
NC_017621.1\|WP_014638447.1\|1604710_1605250_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|366841
NC_017621.1\|WP_014638441.1\|1601379_1601562_+\|DUF1508-domain-containing-protein	unknown	unknown	gnl\|CDD\|377831

Protein	Function_ID	Function_description	E-value
NC_017621.1\|WP_002936249.1\|1607228_1607825_-\|YpmS-family-protein	gnl\|CDD\|378302	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.55742e-71
NC_017621.1\|WP_002936253.1\|1608622_1609456_-\|DegV-family-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	9.38866e-110
NC_017621.1\|WP_014638452.1\|1611631_1612453_-\|TlyA-family-RNA-methyltransferase	gnl\|CDD\|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	4.44732e-119
NC_017621.1\|WP_002936269.1\|1613314_1613530_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	9.93388e-18
NC_017621.1\|WP_014638451.1\|1609549_1611211_-\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NC_017621.1\|WP_014638440.1\|1600962_1601157_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	4.49674e-09
NC_017621.1\|WP_014638453.1\|1612445_1613315_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	4.59752e-80
NC_017621.1\|WP_014638454.1\|1613504_1614848_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
NC_017621.1\|WP_002936261.1\|1611213_1611639_-\|arginine-repressor	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	4.87292e-36
NC_017621.1\|WP_014638437.1\|1599101_1599569_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.00721e-18
NC_017621.1\|WP_014638446.1\|1604354_1604714_+\|STAS-like-domain-containing-protein	gnl\|CDD\|379507	pfam14213, DUF4325, STAS-like domain of unknown function (DUF4325). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 99 and 341 amino acids in length. This domain is distantly related to the STAS domain.	2.97193e-07
NC_017621.1\|WP_002936247.1\|1606863_1607139_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259853	cd13831, HU, histone-like DNA-binding protein HU. This subfamily includes HU and HU-like domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta). In E. coli, HU binds uniformly to the chromosome, with a preference for damaged or distorted DNA structures and can introduce negative supercoils into closed circular DNA in the presence of topoisomerase I. Anabaena HU (AHU) shows preference for A/T-rich region in the center of its DNA binding site.	2.39489e-41
NC_017621.1\|WP_014638444.1\|1602668_1603436_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	5.14261e-24
NC_017621.1\|WP_002936251.1\|1607796_1608630_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|239947	cd04506, SGNH_hydrolase_YpmR_like, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.	1.05481e-81
NC_017621.1\|WP_014638447.1\|1604710_1605250_+\|PIN-domain-containing-protein	gnl\|CDD\|366841	pfam01850, PIN, PIN domain.	1.8809e-06
NC_017621.1\|WP_014638441.1\|1601379_1601562_+\|DUF1508-domain-containing-protein	gnl\|CDD\|377831	pfam07411, DUF1508, Domain of unknown function (DUF1508). This family represents a series of bacterial domains of unknown function of around 50 residues in length. Members of this family are often found as tandem repeats and in some cases represent the whole protein. All member proteins are described as being hypothetical.	1.40731e-11

>NC_017621.1|WP_014638447.1|1604710_1605250_+|PIN-domain-containing-protein
MSTEVYDLNRIPFGSNRNLLIDTNVLIYLQSGKTNNYDKMWELALRQGNSLFVTTLTISEFINRYVRTGYDVYCDEHNFDKSTFKFKRDYQKTQHFLDIYDEVIDTLESEILKKCNVIDFNKKDFEDISSLTQYMNDINDALYLKKAATEDFSIVTHDADFFDVDIPQQIRIYTYNKKY
>NC_017621.1|WP_014638446.1|1604354_1604714_+|STAS-like-domain-containing-protein
MTILFVKDIIGDTLAVTADKGERVFKILKTNIENNEQTTLDFEGITDLISAFSNTALGQLYDVADADTLNRLIKVNPDTLHPSDRRTIDRSIKNSKNKREKDREFRKRLAEKMDSELNI
>NC_017621.1|WP_014638445.1|1603439_1604339_+|ATP-binding-region,-ATPase
MANYTIKIPVEIKSDYFPLLLLNVEFVTAMSKATKFDTITFDFSRTSWIDAEMTVVLSMMFELALQQTDGEVRAVIETMPDTVKTILKKNNFFPAYNLGEKLMDTFNTTITFFAGNPSDDNLIHEYIREEVFAAIGSKISDDFLKEVSYCIFEIVHNVRDHSGGDRFYICGQHYPKQGILRLAISDIGVGLPAKVKQRNPHMTSDIEAVEWAFVNGNTTKRRKEGGVGLHSIKDLLHQRGQLKLISNQAYYSISRTGTITTQTMPERFRGTLLWIEFDIHKCLKPRKNVKIENNDTFNF
>NC_017621.1|WP_014638444.1|1602668_1603436_+|helix-turn-helix-domain-containing-protein
MARGRGKATPHDLEAMQHVSGMLQRLLAENDLKQSHLADRLEIPRSSFNEYVKGTALPRPGNVQKIADYFGLKKSNIDPRFKSTIPSATPKTVSDDVLRLDRDLHSNNHKSWIRYGNELLDKQNTVNEPQAVYFTYNYYDQPASAGTGQYLNDVKVETIELPIEVDADFVVPIYGDSMEPEYHSGDYVFVKLSVDLSDGDIGVFAYNGDAYIKQLRITDQGAYLHSLNPDYDNIPITADTDFRTIGEVVEVYRER
>NC_017621.1|WP_153308532.1|1602056_1602218_-|hypothetical-protein
MDIYENVGLLIFMQLTAMYACIFMAYYQIQLIKEFSKHLKKEKRRRKSNNGRK
>NC_017621.1|WP_014638441.1|1601379_1601562_+|DUF1508-domain-containing-protein
MYFVIYKSKNDQYYFVIKGANREVVATSETYYYKSTAQRTIDSIKNSISPNSNVIDMTGD
>NC_017621.1|WP_014638440.1|1600962_1601157_-|helix-turn-helix-transcriptional-regulator
MLWKNIERILAEKNFSVYRLALNAGLDPAMLYRLRDGKVKDLHFETVKKIAKALDVSLNELAKS
>NC_017621.1|WP_041179227.1|1600571_1600883_-|hypothetical-protein
MSKAELVYRPAKQSEKTEAGDYAQLCQIWEGLTVTTAKVWAAEMREHPDFRQYVFNPTHKIVFIDYKGFGLFVKWKSRNRYRPKKETLAEMLKNIEVEKRFSA
>NC_017621.1|WP_041179226.1|1600287_1600575_-|hypothetical-protein
MTESIYDALTSLSVFVLPILAVAIAEQRKAEKERKKRDPELLLDYKIAMACEQAVEADRLARKSSAQQTLASREPIKFADEVPTRTPRKWGRHAN
>NC_017621.1|WP_014638437.1|1599101_1599569_-|GNAT-family-N-acetyltransferase
MTIRKARQSDIPVLNELLQDILQVHYQARPDIFKSAGQKFSEAELVALLENPDKPIFVFELEGQVVGHLFCELSTATGDVFETVKTLFIDDLCVANSARGQKIGEQLYEFALSYAKEQGCHNLTLDVWADNAGAVRFYERQGMKPQKFRMEQIIN
>NC_017621.1|WP_002936247.1|1606863_1607139_-|HU-family-DNA-binding-protein
MANKQDLIAKVAEATSLTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTGRNPQTGAEIKIAASKVPAFKAGKALKDAVK
>NC_017621.1|WP_002936249.1|1607228_1607825_-|YpmS-family-protein
MRPRKAGNLNIWKWLFLAQLALLIGCGIVLYTRIQTDREDLTKLVQTSTEDTKVGTFSTNREQLNQTLTNYLKEYQTEEFSYQLFVTSQQVVFEGSYQIFGVTIPLYIYFQPSKMEDGSILLRITEISVGSLSLPKAEVLAYLQKNYKLPAFVKIDSEQAQVQVQLTELKNKFGLYGKANTIDLYNDQFIVDIYRKRQ
>NC_017621.1|WP_002936251.1|1607796_1608630_-|SGNH/GDSL-hydrolase-family-protein
MNNRKLIQGFVFFFLAILGSIFLFHQLIPVASSRISRQELTVSEKISFRYVALGDSLTEGVGDTTGQGGFVPLLAQSLTNDYGYEVDYKNFGVSGNTSNQILKRMKEDGELISYLKTADLLTLTVGGNDLRKAIIKNIANLKVSTFDKPAKDYGKRLDTIIKTARKNNPNLPIYVVGIYNPLYLNFPELTEMQTIVDNWNTMTEQITEKYQHVYFVPINDLLYKGLEGEAGISQNGSQVTNNLLYEEDSFHPNNTGYEIMKKAILERMNETTESWEP
>NC_017621.1|WP_002936253.1|1608622_1609456_-|DegV-family-protein
MSKIKIVTDSSTTIEPSLVEELNITVVPLSVMVDGVVYSDNDLKEGEFLELMRGSKNLPKTSQPPVGLFAETFADLAKDGSQIIAILLSHALSGTVEAARQGATLSGADVTILDSSFTDQAEKFQVVEAARMAQAGASKEEILAAIETVKEKTELYIGVSTLENLVKGGRIGRVQGMLSSLLNIRVIMEMKDHQLTPIVKGRGNKTFKKWLEEFTATLADKKVAEIGISYSGTADFANEMKSQLQEYVSKEISVLETGSIIQTHTGEDAWAILIRYE
>NC_017621.1|WP_014638451.1|1609549_1611211_-|DNA-repair-protein-RecN
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQILLEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDGFWSLKDRYQTIFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNEDFSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLIQLESRLDLLNTITKKYGGTVDDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTKGKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIGQYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG
>NC_017621.1|WP_002936261.1|1611213_1611639_-|arginine-repressor
MNKRERLEVIKDLVVRFPIDTQEEIVERLEAMGVNATQATVSRDIKELGIIKVPSADKGYIYGLPKAGLVKVKSQNVFEVSVMDKMINLRLVPGSSAVVKRQILEQFQEHVFSVIADDDSILLIVTNEGIISQIEQTVRGW
>NC_017621.1|WP_014638452.1|1611631_1612453_-|TlyA-family-RNA-methyltransferase
MAKERVDVLAFKQGLFETREQAKRGVMAGLVISVINGERYDKPGEKIDEGIELKLKGEKLKYVSRGGLKLEKALQVFQLSVEGQTTIDIGASTGGFTDVMLQAGAKQVYAVDVGTNQLAWKLRQDERVISMEQYNFRYAELGDFELGQPSFASIDVSFISLSLILPALHRILAEGGQVVALVKPQFEAGREQIGKNGIVKDKSVHLKVLEEVTKMAVETGFSVKALSFSPVQGGHGNIEFLAHLEKSTQPNQIDKEVITTTVYQAHEEFKKDE
>NC_017621.1|WP_014638453.1|1612445_1613315_-|polyprenyl-synthetase-family-protein
MVASKLQRLEEAMADFYQPQVAERLNQSVLYSLQAGGKRIRPLLLLTILESFGMELKQAHYQVAACVELIHTGSLIHDDLPAMDNDDYRRGRLTNHKVYDEATAILAGDSLFLDPFGFLAQVDLPAETILALVRELSQASGTFGMVAGQVLDMAGEGQNLTLEQLQAIHANKTGKLLTFPFVAAGLIAGQSDVVISHLRQAGQLIGLAFQVRDDILDVTATFEEIGKTPQKDVLAEKSTYPALMGLEASKVFLEDSLNQAINELDQVAKQVPFSTEKIKEIIESLRING
>NC_017621.1|WP_002936269.1|1613314_1613530_-|exodeoxyribonuclease-VII-small-subunit
MSKQTKTFEENLAELEGIVTKLERGDVALEEALAEFQKGMVLSKDLQKTLAEAEKTLVKVMQADGSEAEMD
>NC_017621.1|WP_014638454.1|1613504_1614848_-|exodeoxyribonuclease-VII-large-subunit
MVEYLSVSHLTKYLKLKFDRDPYLEKVYLTGQVSNFRKRPSHQYFSLKDDKAVIQATMWAGVYKNLGFELEEGMKINVIGRIQLYEPNGSYSIVIEKAEPDGIGALAIKFEQLKQALTQEGLFKEEFKQVLPRFTKKIGVITSPSGAVIQDIITTVSRRFSGVEIVLYPTKVQGDGAAQEVVANIQRANERDDLDVLIVGRGGGSIEDLWAFNEEIVVRAIFESRIPIISSVGHETDTTLADFVADKRAATPTAAAELATPVTKADLLGYLNQQENRAYQAMTNRLRFLRGQLEKISQSVMFRQPERLYDGYLQKLDRLTNQLQTRMKELYSQQKQAGLLLQQRLQGVHPGRKVESFQERIIQQERLLKSNMANIYDNKMAKADKLIEALTMLDTSRIVARGYAMIRQDGRVIDSVENVQMGENLTIQMKDGQLDVEVKHVQTDENI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_017621_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017621_4

1704466-1704664

Unclear

Consensus_repeat	Method
AACATGTCGCATATAATTGACATC	CRISPRCasFinder

3 spacers

cas3

The CRISPR arrays of NC_017621_4

>merge|NC_017621|4|1704466-1704664|CRISPRCasFinder
AAACTGTCAAATATAGTTGACAACTTATATGAACAGGTATATACTAACAGTAAAGAAACATGTCGCATATAATTGACATCAACAGGGAGGTCTCCCTCATTTTTTTTACAACCAACTGTCGCATATAATTGACATCGTACCTAAGGATAGCTAGTCTATCCTCTCTCTTTACAATAGAATGTCGCATATATTTTACACG

>NC_017621|4|4|1704466-1704664|CRISPRCasFinder
AAACTGTCAAATATAGTTGACAAC	TTATATGAACAGGTATATACTAACAGTAAAGA
AACATGTCGCATATAATTGACATC	AACAGGGAGGTCTCCCTCATTTTTTTTACAAC
CAACTGTCGCATATAATTGACATC	GTACCTAAGGATAGCTAGTCTATCCTCTCTCTTTACAAT
AGAATGTCGCATATATTTTACACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017621.1\|WP_014638527.1\|1704878_1705082_+\|hypothetical-protein	unknown	unknown	unknown
NC_017621.1\|WP_014638522.1\|1697369_1698713_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NC_017621.1\|WP_014638521.1\|1697127_1697352_-\|DUF4059-family-protein	unknown	unknown	gnl\|CDD\|338656
NC_017621.1\|WP_014638523.1\|1699874_1700873_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NC_017621.1\|WP_014638524.1\|1700874_1703124_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223839
NC_017621.1\|WP_014637131.1\|1698792_1699056_-\|hypothetical-protein	unknown	unknown	unknown
NC_017621.1\|WP_041179229.1\|1708605_1709655_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NC_017621.1\|WP_014638519.1\|1695647_1696187_-\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|224317
NC_017621.1\|WP_014638528.1\|1705091_1706174_+\|DUF3278-domain-containing-protein	unknown	unknown	gnl\|CDD\|371668
NC_017621.1\|WP_014638518.1\|1694123_1695551_-\|NADP-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NC_017621.1\|WP_014638529.1\|1706186_1706531_+\|hypothetical-protein	unknown	unknown	unknown
NC_017621.1\|WP_014638531.1\|1706920_1707349_+\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|377759
NC_017621.1\|WP_014638534.1\|1710290_1711280_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|173833
NC_017621.1\|WP_014638532.1\|1707656_1708613_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	unknown	unknown	gnl\|CDD\|237373
NC_017621.1\|WP_002937992.1\|1703123_1703447_-\|cell-division-protein-FtsL	unknown	unknown	gnl\|CDD\|227176
NC_017621.1\|WP_012027664.1\|1709732_1710212_-\|FMN-binding-protein	unknown	unknown	gnl\|CDD\|227275
NC_017621.1\|WP_014638530.1\|1706520_1706868_+\|hypothetical-protein	unknown	unknown	unknown
NC_017621.1\|WP_014638520.1\|1696196_1697114_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NC_017621.1\|WP_014638526.1\|1704676_1704865_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NC_017621.1\|WP_014638525.1\|1703457_1704408_-\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|223352

Protein	Function_ID	Function_description	E-value
NC_017621.1\|WP_014638522.1\|1697369_1698713_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	7.06543e-134
NC_017621.1\|WP_014638521.1\|1697127_1697352_-\|DUF4059-family-protein	gnl\|CDD\|338656	pfam13268, DUF4059, Protein of unknown function (DUF4059). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 70 amino acids in length. There is a conserved DKT sequence motif.	2.99345e-23
NC_017621.1\|WP_014638523.1\|1699874_1700873_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	6.11786e-122
NC_017621.1\|WP_014638524.1\|1700874_1703124_-\|penicillin-binding-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	5.35581e-131
NC_017621.1\|WP_014638519.1\|1695647_1696187_-\|DUF177-domain-containing-protein	gnl\|CDD\|224317	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only].	7.73184e-33
NC_017621.1\|WP_041179229.1\|1708605_1709655_-\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	4.81043e-108
NC_017621.1\|WP_014638528.1\|1705091_1706174_+\|DUF3278-domain-containing-protein	gnl\|CDD\|371668	pfam11683, DUF3278, Protein of unknown function (DUF3278). This bacterial family of proteins has no known function.	3.63929e-37
NC_017621.1\|WP_014638518.1\|1694123_1695551_-\|NADP-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NC_017621.1\|WP_014638534.1\|1710290_1711280_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|173833	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX)D) located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, protecting and stabilizing reactive carbocation intermediates. Farnesyl diphosphate synthases produce the precursors of steroids, cholesterol, sesquiterpenes, farnsylated proteins, heme, and vitamin K12; and geranylgeranyl diphosphate and longer chain synthases produce the precursors of carotenoids, retinoids, diterpenes, geranylgeranylated chlorophylls, ubiquinone, and archaeal ether linked lipids. Isoprenyl diphosphate synthases are widely distributed among archaea, bacteria, and eukareya.	4.50095e-67
NC_017621.1\|WP_014638532.1\|1707656_1708613_-\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	gnl\|CDD\|237373	PRK13387, PRK13387, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional.	2.49745e-94
NC_017621.1\|WP_002937992.1\|1703123_1703447_-\|cell-division-protein-FtsL	gnl\|CDD\|227176	COG4839, FtsL, Protein required for the initiation of cell division [Cell division and chromosome partitioning].	5.7243e-24
NC_017621.1\|WP_012027664.1\|1709732_1710212_-\|FMN-binding-protein	gnl\|CDD\|227275	COG4939, COG4939, Major membrane immunogen, membrane-anchored lipoprotein [Function unknown].	6.11724e-24
NC_017621.1\|WP_014638531.1\|1706920_1707349_+\|NusG-domain-II-containing-protein	gnl\|CDD\|377759	pfam07009, NusG_II, NusG domain II. This domain is found in some NusG proteins where it forms domain II. However most NusG proteins are missing this domain. In other cases this domain is found in isolation. The function of this domain is unknown.	4.70552e-32
NC_017621.1\|WP_014638520.1\|1696196_1697114_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	1.27771e-131
NC_017621.1\|WP_014638526.1\|1704676_1704865_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	7.15287e-24
NC_017621.1\|WP_014638525.1\|1703457_1704408_-\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|223352	COG0275, COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane].	2.73032e-178

>NC_017621.1|WP_014638525.1|1703457_1704408_-|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MTKEFNHTTVLLHETVDMLDIKPNGIYVDATLGGAGHSEYLLSQLTDGGHLYAFDQDQTAIDHAHIRLASYIEKGQVTFIRDNFRNLKTRLAELGVTEIDGICYDLGVSSPQLDERERGFSYKQDAPLDMRMNREGHLTAYDVVNNYDYHDLVRIFFKYGEDKFSKQIARKIEQARAVKPIETTTELAELIKSAKPAKELKKKGHPAKQIFQAIRIEVNDELGAADESIQQAIDLLALDGRISVITFHSLEDRLTKQLFKEASTIDVPKGLPFIPDDLKVPLELVNRKPILPSQEELEANNRAHSAKLRVAKKVHK
>NC_017621.1|WP_002937992.1|1703123_1703447_-|cell-division-protein-FtsL
MLQEKRREATMRVIGDKIRTFTRVEKAFYSSIVLSGLALAIGIIFMQTRLLQLQSGMAKVNQDISQKQIEINDAKQAVNELTRSARLMEIAEKAGLTFNNDNIGVAE
>NC_017621.1|WP_014638524.1|1700874_1703124_-|penicillin-binding-protein
MPRRNNKLLRYVLKKRYVPSKNRRRVGQSLLLLTVFVFFLFLINFAYIIGTDSKFGVDLSERADAVHQREVTVQAKRGTIYDRTGIPIAEDSTTYTVYAIIDTEYVSELKKVLYVQSSQFSKVAEIFKKHLGMETDYVMEQLNQPELKQVYFGTLGKNISYSTMSSIQEEMKAAGIEGIAFNASPGRMYPNGNFASIFVGLANPVENKDGSHSLQGVSGLEYYLNDILAGQDGKVIYEKDSQGRVLPGTEKVETETVNGQDVYTTISADLQRSLETNMNTFFDNAKGRYANATLVSAKTGEILATTQRPSYDSDTKEGLGQEGLLERSLLYQEAFEPGSTMKVLTVASAIDNGTFDPNAYYTNNEYVIADAKINDWTLNAGYSAVTLNYAQGFSLSSNVGMTLLQQQMGDEKWLNYLTKFRFGYPTRFGMGDEAPGMVPEDNIVSIAMSTFGQGISANQAQMLRSFTSIANNGIMLEPKFISALYNPNTDTARVSSKEEVGNPVSEQAADDTLRYMINVGTDPVYGTLYSHDLQGPAIQVDGYDIAVKSGSAEIAGEDGQGYIKGAYINSVVAMIPAEDPEFIMYVTIRQPEVLNVLSWRDIVSPTLKEAMLLKDNLNLDSPAPALAQVANETEYQLPDLIGKAPGESAEELRRQLVQPVILGNGAEIKKVSVEKGSNVIANQQVLLLTNKFEEMPDLYAITKENMDIFAEWTGIEVTYRGTGSKVVDQSVEVGTALNKTKKITITLGD
>NC_017621.1|WP_014638523.1|1699874_1700873_-|phospho-N-acetylmuramoyl-pentapeptide--transferase
MQFALMSGLVAFLATVLLIPRFITFYQAKRIEGQQMHEDVKQHQFKAGTPTMGGTVFLVVAILVSLLFATAFQLLTGGVLAILFILALYGVVGFLDDFLKIFRKINEGLNPKQKLALQILGGIVFYFVHVRGAGGGELNVFGHMIHLGVLYFPFVLFWLVGFSNAVNLTDGIDGLASISVVISLLAYSVIAFNEQKFDILLVCVTMIGGLLGFFVYNRKPAKIFMGDVGSLALGGMLATISIALRQEWTLLLIGLVYVIETSSVMLQVSYFKYTKKRFGEGRRIFRMTPFHHHLELGGLTGKAEKWSEWKVDFFLWSVGLVMSLITLAILYL
>NC_017621.1|WP_014637131.1|1698792_1699056_-|hypothetical-protein
MIGVKITKKTVEKTIANAVPILGGLISGGLTYFTFQPMGGMLADTFVKKINGDFDGELELTEAFKASLEEEKELGIIEAEFTEASES
>NC_017621.1|WP_014638522.1|1697369_1698713_-|DEAD/DEAH-box-helicase
MKFTDMKLKPYIQEALKEINFVQPTEVQEKLIPVVLSGRDLIGESKTGSGKTHTFLIPIFQKLSEELDQVQAFIPAPSRELATQIYQAARQLASHSDIEVRVTNYVGGTDKNRQIDKLQASQPHIVVGTPGRIYDLVKSGDLAIHKAKTFVVDEADMTLDMGFLETVDKIAGSLPKDLQFMVFSATIPQKLQPFLKKYLSNPVMEQIKTHTVISDTIENWLISTKGRDRNAQILEVTKLMQPYLAMIFVNTKTRADELHSYLTANGLRVAKIHGDIPPRERKRMMNQVKNLDYQYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGIAITLYQPSDDADIRELEKLNIKFLPKEMKNGEFVDTYDRDRRANREKSREKLDLEMIGLVKKKKKKVKPGYKKKIQWAVDEKRRKTKRVEARAKGRAERKAKRQTF
>NC_017621.1|WP_014638521.1|1697127_1697352_-|DUF4059-family-protein
MLQNILSFYLQGLLIASLLIITSSLVWFIWRATKGVDKTLQERQDFLFDLLMINVMTIPIVAFGVVGILLMFKA
>NC_017621.1|WP_014638520.1|1696196_1697114_-|thioredoxin-disulfide-reductase
MYDTVVIGAGPAGMTAALYAGRSNLKVALLERGIYGGQMNNTAEIENYPGYDHISGPALAEKMFEPLEKFGVDHIFGTLVRIEEEGQIKKVITEDGVLETKTVVLAMGAKHRLLGIPGEDTYNSRGVSYCAVCDGAFFRGQKLLVVGGGDSAVEEALFLTQFAESVTIVHRRDQLRAQKVIQDRAFTNEKINFIWDSVVEEIKGDDLRVQSVVIKNVKTEEVSELDFGGVFIYVGLDPMTDTVADLGITDEAGWVITNEKMETTQSGIYAIGDIRQNQLRQIATAVGNGAVAGQEVYNYITELAE
>NC_017621.1|WP_014638519.1|1695647_1696187_-|DUF177-domain-containing-protein
MFHIYDIQKNPDGISFDKTLDLQEELQARNGEVLGLSPVQVTGNIRFESGFFFLDYQMTYDITLASSRSLQPVVLHEVQNVNELFVANESVLKEQDLIDEDMVLVVEDDHIVLDESVADNILLAIPIKVLTPEEEAGQELPSGQAWALMTEEDFQQKAQEKKEANSPFAQLQGLFGDED
>NC_017621.1|WP_014638518.1|1694123_1695551_-|NADP-dependent-phosphogluconate-dehydrogenase
MTKANFGVVGMAVMGRNLALNVESRGYSVAIYNRSADKTEDVVASNPGKNLVPSYDVESFVASIEKPRRIMLMVQAGPGTDATIQALLPHLDEGDILIDGGNTFYEDTIRRSKELANSGINFIGTGVSGGEKGALEGPSIMPGGQKEAYELVADVLEEISAKAPEDGAPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAESYDLMQHLLGLSVDEMADIFTEWNKGELDSYLIEITADILKRKDDQGQAGPIVDYILDAAGNKGTGKWTSQSSLDLGVPLSLITESVFARYISTYKDERVAASKVLPKPAPFAYEGDKAELVEKIRQALYFSKIMSYAQGFAQLRVASKENNWNLPFGEIAKIWRAGCIIRARFLQKITDAYGRDEDLANLLLDEYFLDVTAKYQQAVRDVVALAVQAGVPVPTFSAAITYFDSYRAENLPANLIQAQRDYFGAHTYNRKDKEGIFHYDWYSESK
>NC_017621.1|WP_014638526.1|1704676_1704865_+|helix-turn-helix-transcriptional-regulator
MNRVKDHRLLLGISQLDLAKAIGVSRQTINMIENNKYNPSLDLCINLAKALQTDLNSLFWNE
>NC_017621.1|WP_014638527.1|1704878_1705082_+|hypothetical-protein
MKKNTRQALISTLIFIPLFVLFQLWGNSGAEILHTISQAKFWLQLLIAGTIYFLGLSYLPLIFVVSK
>NC_017621.1|WP_014638528.1|1705091_1706174_+|DUF3278-domain-containing-protein
MKKENFQDKLIKRFYGIAGPLDEFRQKEAFRLGNTCFILLFWGTMALTLLALALSKRFPEVVAYGYPTALLLSTLSSSMYMTSKMRHSQVDSLDVEELTSKEQKQLKGASIKFALYFTTVMYIWVVVFGAWMEGLNPLNHLFDLRKFLSACLGGVFTGIAIEITLRKRMKKAEKLTVSSAISKEEPKWIKNMIKRFYGIRGPLDEYRRSQADAIGGQTFIYYFYFLALGNAIAYFLAYRYPVEVATYYPMTIALFSFILIGVVNMRTLYADLPQYDVDELSPEERQARPLNPLLWGLGVALLSSLFAGLADLFSLQLPLLDSIFHVKSLFFGGMMGLFASLALSAIAYLQKLEADSAKKK
>NC_017621.1|WP_014638529.1|1706186_1706531_+|hypothetical-protein
MNKPFSPKQTCRFFVLFYGLFSAFFIYSYMVKEPINGSFLLMLPTIQIIKSYQTAEEKRYFIIQAIFALFAMTLTYSVGIWLGHVKPLILILPAGFAAAILYRIYFKKEKPDER
>NC_017621.1|WP_014638530.1|1706520_1706868_+|hypothetical-protein
MNVDNPKFILTLIVLSYTAICSLYIHSYLTGDNPPIFILPFTILPILNSDWQTSGPEANAFQKAIYLYHKPLLWFLFAGFALTFSIVFFAGKIQPLHAGFWGMLAILLFFRQLKK
>NC_017621.1|WP_014638531.1|1706920_1707349_+|NusG-domain-II-containing-protein
MTFKSILKQLKLFDYILIGFTLILSFLPAIFTYAHLTTDTNEAKTIAYVRINGEVVDQFELSKDTPHQEKTYYPNEGQYNIIEVDGERIRVKEDNSPDQIAVMTSWISQPGQLSVCLPHNLLIEIKSVGGESTDEEELILPL
>NC_017621.1|WP_014638532.1|1707656_1708613_-|1,4-dihydroxy-2-naphthoate-polyprenyltransferase
MNKSTKGLSLPVFLEFVELKTKVASVFPMTLGILWSLYRYQAFNWLNTLLFIIAVLSFDMCTTAINNSMDYHKAKDETYRQESNVIGKFSLDFRQMIRIVLALLIFSVIISLVLVWRTSWLLLPMGALCFLIGIFYTFGPIPLSRMPLGEVFSGVTMGFGIFFLAVFIQQPDLLLTSQVSGQWMTLQFSWTKIIEIIFMSIPLVTLIANIMLANNTCDLEEDIRNHRYTLVYYIGKKNALKLYFVLASLPWLLWIIYCLIGFLPIWALAGLIGVWPAYKSLETFLKKQVKRETFIEAVKSFVLFALLYVVILALALIF
>NC_017621.1|WP_041179229.1|1708605_1709655_-|FAD:protein-FMN-transferase
MKKIASLLFVGLLMVLLVACGGKQNESLSVVKTPLTRSESLLHTVVQLSIYHENQEEAMDEAVSYIKEMESLLSTNLEGADVYRINQAAGKEAVKVDERTFEVIETAIDMSKESQGLFDISIGAVSNLWKIGDEDARKPSDEEIKAALPFINYKDITLDKEKKTVFIKEGMTLELGAISKGYIADKVRELFASKGITTAIINLGGNVVVMGDSPTTQNGWNVGVQDPDQVRGATVGSVPGTHDSVVTSGIYERYLEVDGVKYHHILDPKTGYPVENDISGVTVFSKTSIQGDALSTTLFLLGVEKGLDFINQIDSVEAVFIDKEQGVHLSDGLKESFELTNEEYHLVNE
>NC_017621.1|WP_012027664.1|1709732_1710212_-|FMN-binding-protein
MKTTKVVLKSLVVLGAVFALVACGSKQESTSTSSSTTETVVLKDGTYKAESGKDDYGYKIVHTLTVKDGKISESKFDYEAEDGSLKSANEEYNKNMKDKAGVSAGEAIEQLNAALVEKQDLSAVEVVSGATHTSEDFKKSTEALLAAAAEGKTETVKLD
>NC_017621.1|WP_014638534.1|1710290_1711280_-|polyprenyl-synthetase-family-protein
MVHQIWNTYPEIERGLEEVKSIILSEMMVLHPAVTAKIVEYVEAPGKYLRAGLCLLFAQMTEGKISRSKLYFAAHLEVLHLATLIHDDVIDGADKRRGVTAAHQQFSNRIAIYTGDYLLAYSSRLFGKGLRLLEVSRDDLDLGNDKLMETILRGELSQLLNQFDANMTMKAYLKQIQGKTAFLFGLACQLGSFVPGQSRKDSSMAFRSGQALGMAFQLRDDLIDYQLDVAASGKPRLQDIQNGIYTAPLLFAMREDKSIQQQLRAYIQSPTAEGLESLTDRIFATQAIAKTERLIVSYLEKMMNFVDRIPQLSTASMQNLVAIVFSHYF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017621_3	3.2\|1606651\|28\|NC_017621\|CRT	1606651-1606678	28	NC_017621.1	1606527-1606554	0	1.0

1. spacer 3.2|1606651|28|NC_017621|CRT matches to position: 1606527-1606554, mismatch: 0, identity: 1.0

aaaaatactaaagcttctccctctttga	CRISPR spacer
aaaaatactaaagcttctccctctttga	Protospacer
****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017621_3	3.4\|1606732\|29\|NC_017621\|CRISPRCasFinder	1606732-1606760	29	MK448984	Streptococcus phage Javan562, complete genome	35217-35245	0	1.0
NC_017621_3	3.2\|1606651\|28\|NC_017621\|CRT	1606651-1606678	28	MK448810	Streptococcus phage Javan573, complete genome	38440-38467	1	0.964
NC_017621_3	3.4\|1606732\|29\|NC_017621\|CRISPRCasFinder	1606732-1606760	29	KC348598	Streptococcus phage phi20c, complete genome	14-42	1	0.966
NC_017621_3	3.4\|1606732\|29\|NC_017621\|CRISPRCasFinder	1606732-1606760	29	MK448810	Streptococcus phage Javan573, complete genome	38358-38386	1	0.966
NC_017621_3	3.4\|1606732\|29\|NC_017621\|CRISPRCasFinder	1606732-1606760	29	MK448984	Streptococcus phage Javan562, complete genome	35274-35302	2	0.931
NC_017621_3	3.4\|1606732\|29\|NC_017621\|CRISPRCasFinder	1606732-1606760	29	MK448810	Streptococcus phage Javan573, complete genome	38415-38443	2	0.931
NC_017621_3	3.4\|1606732\|29\|NC_017621\|CRISPRCasFinder	1606732-1606760	29	LR597637	Escherichia phage ESSI2_ev239 genome assembly, chromosome: 1	20727-20755	7	0.759

1. spacer 3.4|1606732|29|NC_017621|CRISPRCasFinder matches to MK448984 (Streptococcus phage Javan562, complete genome) position: , mismatch: 0, identity: 1.0

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
ttgacgcaaaatacttttgcttcatttcc	Protospacer
*****************************

2. spacer 3.2|1606651|28|NC_017621|CRT matches to MK448810 (Streptococcus phage Javan573, complete genome) position: , mismatch: 1, identity: 0.964

aaaaatactaaagcttctccctctttga	CRISPR spacer
aaaattactaaagcttctccctctttga	Protospacer
**** ***********************

3. spacer 3.4|1606732|29|NC_017621|CRISPRCasFinder matches to KC348598 (Streptococcus phage phi20c, complete genome) position: , mismatch: 1, identity: 0.966

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
ttgacgcaaaatgcttttgcttcatttcc	Protospacer
************.****************

4. spacer 3.4|1606732|29|NC_017621|CRISPRCasFinder matches to MK448810 (Streptococcus phage Javan573, complete genome) position: , mismatch: 1, identity: 0.966

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
ttgacgcaaaatgcttttgcttcatttcc	Protospacer
************.****************

5. spacer 3.4|1606732|29|NC_017621|CRISPRCasFinder matches to MK448984 (Streptococcus phage Javan562, complete genome) position: , mismatch: 2, identity: 0.931

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
ttgacgcaaaatgcttttgcttcatttct	Protospacer
************.***************.

6. spacer 3.4|1606732|29|NC_017621|CRISPRCasFinder matches to MK448810 (Streptococcus phage Javan573, complete genome) position: , mismatch: 2, identity: 0.931

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
ttgacgcaaaatgcttttgcttcatttct	Protospacer
************.***************.

7. spacer 3.4|1606732|29|NC_017621|CRISPRCasFinder matches to LR597637 (Escherichia phage ESSI2_ev239 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.759

ttgacgcaaaatacttttgcttcatttcc	CRISPR spacer
catacgaaaaataattttgcttcatttat	Protospacer
.  *** ****** ************* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

502212 : 507339

Streptococcus_phage(83.33%)

capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014637590.1\|502212_502938_-	helix-turn-helix domain-containing protein	A0A2P0VHA0	Streptococcus_phage	2.4e-09	48.6
WP_014637591.1\|503080_503269_+	hypothetical protein	A0A1X9I5U7	Streptococcus_phage	2.8e-07	51.6
WP_148256217.1\|503394_503598_+	hypothetical protein	NA	NA	NA	NA
WP_014637592.1\|503696_504164_+	hypothetical protein	NA	NA	NA	NA
WP_014637593.1\|504214_504481_+	hypothetical protein	A0A1X9I6M4	Streptococcus_phage	2.9e-13	49.4
WP_014637594.1\|504653_505424_+	DnaD domain protein	Q38097	Lactococcus_phage	5.4e-36	66.4
WP_014637595.1\|505438_506293_+	ATP-binding protein	A0A1X9I6C4	Streptococcus_phage	1.9e-119	75.4
WP_014637596.1\|506416_506683_+	hypothetical protein	NA	NA	NA	NA
WP_014637597.1\|506684_506855_+	DUF2292 domain-containing protein	NA	NA	NA	NA
WP_014637598.1\|506943_507339_+\|capsid	phage capsid protein	A0A1S5SA80	Streptococcus_phage	1.5e-29	49.2

DBSCAN-SWA_2

1060104 : 1134546

Bacillus_virus(23.08%)

protease,tRNA,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014638031.1\|1060104_1061322_-\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_014638032.1\|1061323_1062466_-	cysteine desulfurase	NA	NA	NA	NA
WP_014638033.1\|1062578_1062992_+	hypothetical protein	NA	NA	NA	NA
WP_014638034.1\|1063052_1063436_+	hypothetical protein	NA	NA	NA	NA
WP_014638035.1\|1063454_1064483_-	threonine aldolase	NA	NA	NA	NA
WP_013730343.1\|1064653_1065859_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_012775068.1\|1066461_1066695_-	DUF2969 domain-containing protein	NA	NA	NA	NA
WP_014638036.1\|1066761_1067784_-	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_014638037.1\|1067894_1068512_-	DUF4230 domain-containing protein	NA	NA	NA	NA
WP_014638038.1\|1068683_1071137_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	5.2e-93	32.3
WP_014638039.1\|1071160_1072516_-	hypothetical protein	NA	NA	NA	NA
WP_014638040.1\|1073281_1075231_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	4.6e-124	42.9
WP_014638041.1\|1075373_1076018_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_014638042.1\|1076139_1079790_-	helicase-exonuclease AddAB subunit AddA	G3MA40	Bacillus_virus	1.2e-21	23.6
WP_014638043.1\|1079789_1083056_-	ATP-dependent nuclease subunit B	NA	NA	NA	NA
WP_014638045.1\|1083857_1085171_-	GTPase ObgE	NA	NA	NA	NA
WP_002943675.1\|1085374_1085503_-	DUF4044 domain-containing protein	NA	NA	NA	NA
WP_014638047.1\|1087813_1089583_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_011922278.1\|1089823_1090567_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-25	29.4
WP_014638048.1\|1090563_1092174_+	hypothetical protein	NA	NA	NA	NA
WP_002935466.1\|1092196_1092640_-	VOC family protein	NA	NA	NA	NA
WP_014638049.1\|1092728_1093484_-	M15 family metallopeptidase	NA	NA	NA	NA
WP_162467805.1\|1093837_1095130_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	8.0e-218	95.8
WP_014638051.1\|1095746_1095998_-\|holin	holin	NA	NA	NA	NA
WP_013730336.1\|1096240_1097005_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_014638052.1\|1097083_1097767_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
WP_014638053.1\|1098099_1098849_-	hypothetical protein	NA	NA	NA	NA
WP_014638054.1\|1099290_1101570_-	DNA helicase PcrA	A7KV33	Bacillus_phage	5.5e-129	41.4
WP_014638055.1\|1101863_1103231_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002935455.1\|1103416_1103755_-	hypothetical protein	NA	NA	NA	NA
WP_014638056.1\|1103921_1105712_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	0.0e+00	99.2
WP_050796822.1\|1105740_1106133_-	hypothetical protein	NA	NA	NA	NA
WP_014638058.1\|1106355_1107306_-	2,6-dichloro-p-hydroquinone 1,2-dioxygenase	NA	NA	NA	NA
WP_014638059.1\|1107435_1108143_-	aquaporin family protein	M1I8Y5	Paramecium_bursaria_Chlorella_virus	6.1e-18	29.4
WP_014638060.1\|1108156_1109986_-	type 1 glycerol-3-phosphate oxidase	NA	NA	NA	NA
WP_014638061.1\|1110061_1111576_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_014638062.1\|1111804_1113268_-	HTH domain-containing protein	NA	NA	NA	NA
WP_014638063.1\|1113257_1114610_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002935444.1\|1114978_1115914_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_014638064.1\|1115986_1117063_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_014638065.1\|1117231_1118326_-	glycerol dehydrogenase	NA	NA	NA	NA
WP_014638066.1\|1118446_1119403_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_014638067.1\|1119434_1120103_-	fructose-6-phosphate aldolase	E3SKN5	Synechococcus_phage	1.9e-21	31.0
WP_014638068.1\|1120117_1122562_-	glycyl radical protein	A0A2H4YEI2	Aeromonas_phage	4.9e-06	47.2
WP_002935431.1\|1122713_1124015_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_002935430.1\|1124027_1124333_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_002935429.1\|1124366_1124690_-	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_014638069.1\|1124879_1125854_-	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_011922238.1\|1125866_1126610_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_014638070.1\|1126741_1127518_+	glycyl-radical enzyme activating protein	NA	NA	NA	NA
WP_014638071.1\|1128125_1128413_-	DUF1905 domain-containing protein	NA	NA	NA	NA
WP_014638072.1\|1128423_1129077_-	DNA alkylation repair protein	NA	NA	NA	NA
WP_014638073.1\|1129066_1129576_-	N-acetyltransferase	NA	NA	NA	NA
WP_002935402.1\|1129576_1130194_-	DUF5052 family protein	A0A2K9VCV0	Lactobacillus_phage	3.8e-48	51.5
WP_014638074.1\|1130351_1131194_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_014638075.1\|1131485_1131932_-\|transposase	IS200/IS605 family transposase	A0A0H3UZM0	Geobacillus_virus	2.7e-16	35.8
WP_014638076.1\|1132204_1133521_-	FAD-containing oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	3.2e-89	41.0
WP_014638077.1\|1133736_1134546_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

1143375 : 1216150

Streptococcus_phage(100.0%)

protease,capsid,holin,terminase,head,tail,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014637301.1\|1143375_1144629_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	9.0e-182	99.7
WP_014638084.1\|1144867_1145743_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_014638085.1\|1145760_1146597_-	DUF975 family protein	NA	NA	NA	NA
WP_014638086.1\|1146789_1147671_-	DUF975 family protein	NA	NA	NA	NA
WP_011922209.1\|1147793_1149182_-	amino acid permease	NA	NA	NA	NA
WP_002935371.1\|1149341_1151003_-	hypothetical protein	NA	NA	NA	NA
WP_012775042.1\|1151158_1151986_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	2.9e-152	100.0
WP_014638087.1\|1152277_1153177_+	cation transporter	M1Q1N9	Streptococcus_phage	3.9e-163	100.0
WP_002935368.1\|1153193_1153547_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.9e-60	100.0
WP_014638088.1\|1153530_1154037_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.0e-95	100.0
WP_014638089.1\|1154039_1155221_-	phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	9.2e-221	100.0
WP_014638090.1\|1155594_1156152_-	GNAT family acetyltransferase	M1PSC3	Streptococcus_phage	2.8e-95	100.0
WP_011922200.1\|1156151_1157243_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.4e-207	100.0
WP_014638091.1\|1157598_1158462_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.3e-158	100.0
WP_002935361.1\|1158463_1158781_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	3.1e-54	100.0
WP_014638092.1\|1158800_1159685_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	1.0e-155	100.0
WP_014638093.1\|1159681_1160320_-	dTMP kinase	M1PSC7	Streptococcus_phage	2.8e-115	100.0
WP_014638094.1\|1160494_1161361_+	YitT family protein	M1Q1P6	Streptococcus_phage	7.1e-154	100.0
WP_002935355.1\|1161397_1162669_-	hypothetical protein	M1PLC8	Streptococcus_phage	1.7e-212	100.0
WP_014638095.1\|1162674_1163502_-	hypothetical protein	M1PFV6	Streptococcus_phage	6.4e-136	100.0
WP_014638096.1\|1163595_1164252_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	3.8e-115	100.0
WP_014638098.1\|1165363_1165579_-	hypothetical protein	M1Q1Q0	Streptococcus_phage	9.4e-31	100.0
WP_014638099.1\|1165680_1166013_-	hypothetical protein	M1PLD2	Streptococcus_phage	2.7e-53	100.0
WP_014638101.1\|1169000_1170236_-	recombinase family protein	M1NSJ1	Streptococcus_phage	2.1e-239	100.0
WP_014638103.1\|1170561_1172031_-	LysM peptidoglycan-binding domain-containing protein	M1Q1Y5	Streptococcus_phage	1.3e-280	100.0
WP_014638104.1\|1172037_1172433_-\|holin	phage holin family protein	M1NSD0	Streptococcus_phage	3.8e-46	100.0
WP_014638105.1\|1172410_1172779_-	hypothetical protein	M1PSE0	Streptococcus_phage	5.3e-66	100.0
WP_014636351.1\|1172784_1172991_-	hypothetical protein	M1NSJ5	Streptococcus_phage	1.1e-25	100.0
WP_014638106.1\|1173003_1177551_-	hypothetical protein	M1PSL7	Streptococcus_phage	0.0e+00	100.0
WP_014638107.1\|1177552_1178275_-\|tail	phage tail protein	M1PFW8	Streptococcus_phage	1.8e-134	100.0
WP_014638108.1\|1178271_1181130_-	hypothetical protein	M1NSD5	Streptococcus_phage	2.0e-261	100.0
WP_014638110.1\|1181312_1181732_-	hypothetical protein	M1NSJ8	Streptococcus_phage	7.4e-72	100.0
WP_014636346.1\|1181743_1182313_-	hypothetical protein	A0A1B0RXE2	Streptococcus_phage	1.3e-103	100.0
WP_014638111.1\|1182314_1182641_-	hypothetical protein	M1Q1Z4	Streptococcus_phage	8.9e-57	100.0
WP_014638112.1\|1182647_1183016_-	hypothetical protein	M1PLK9	Streptococcus_phage	3.3e-44	100.0
WP_014638113.1\|1183008_1183347_-\|head,tail	head-tail adaptor protein	M1NSD6	Streptococcus_phage	2.6e-59	100.0
WP_014638114.1\|1183346_1183607_-\|head,tail	phage gp6-like head-tail connector protein	M1PSE8	Streptococcus_phage	7.1e-41	100.0
WP_014638115.1\|1183606_1184812_-\|capsid	phage major capsid protein	M1Q1R5	Streptococcus_phage	2.5e-229	100.0
WP_014638116.1\|1184830_1185526_-\|protease	Clp protease ClpP	M1PLE5	Streptococcus_phage	1.7e-126	100.0
WP_014638117.1\|1185518_1186802_-\|portal	phage portal protein	M1PLL1	Streptococcus_phage	4.6e-250	100.0
WP_014638118.1\|1186859_1187204_-	hypothetical protein	M1NSE1	Streptococcus_phage	5.9e-59	100.0
WP_014638119.1\|1187298_1188891_-\|terminase	terminase large subunit	M1PSF2	Streptococcus_phage	0.0e+00	100.0
WP_014638120.1\|1188887_1189361_-\|terminase	phage terminase small subunit P27 family	A0A1B0RXG3	Streptococcus_phage	2.7e-86	100.0
WP_014638121.1\|1189411_1189642_-	hypothetical protein	M1Q204	Streptococcus_phage	3.1e-40	100.0
WP_014638122.1\|1189643_1189856_-	DUF4314 domain-containing protein	M1PFX9	Streptococcus_phage	2.3e-34	100.0
WP_014638123.1\|1189857_1190106_-	hypothetical protein	M1PG57	Streptococcus_phage	4.0e-41	100.0
WP_014638124.1\|1190178_1191459_-	DNA (cytosine-5-)-methyltransferase	M1NSK8	Streptococcus_phage	7.9e-250	100.0
WP_014638125.1\|1191455_1193567_-	ParB N-terminal domain-containing protein	M1PSN3	Streptococcus_phage	0.0e+00	100.0
WP_014638126.1\|1193538_1194000_-	hypothetical protein	M1Q209	Streptococcus_phage	1.5e-89	100.0
WP_014638127.1\|1194298_1194664_-	HNH endonuclease	M1PLL8	Streptococcus_phage	4.6e-70	100.0
WP_014638128.1\|1194665_1195703_-	methionine adenosyltransferase	M1PG62	Streptococcus_phage	4.8e-197	100.0
WP_014638129.1\|1195747_1195930_-	hypothetical protein	A0A1B0RXC3	Streptococcus_phage	5.9e-26	100.0
WP_014638130.1\|1196128_1196632_-	hypothetical protein	M1PSN8	Streptococcus_phage	6.7e-88	100.0
WP_014638131.1\|1196624_1198001_-	DEAD/DEAH box helicase	M1Q214	Streptococcus_phage	6.7e-263	100.0
WP_014638132.1\|1197981_1198263_-	VRR-NUC domain-containing protein	M1PFY8	Streptococcus_phage	5.5e-47	100.0
WP_014638133.1\|1198609_1200892_-	hypothetical protein	M1NSF0	Streptococcus_phage	0.0e+00	100.0
WP_014638134.1\|1201289_1201613_+	hypothetical protein	M1PSP3	Streptococcus_phage	3.6e-50	100.0
WP_014638135.1\|1201605_1202727_+	DUF2800 domain-containing protein	M1Q218	Streptococcus_phage	1.3e-219	100.0
WP_014638136.1\|1202731_1203280_+	DUF2815 family protein	M1PLM6	Streptococcus_phage	5.4e-99	100.0
WP_014638137.1\|1205616_1206186_-	hypothetical protein	M1Q222	Streptococcus_phage	5.6e-107	100.0
WP_014638138.1\|1206598_1207780_+	hypothetical protein	M1PLN1	Streptococcus_phage	3.4e-223	100.0
WP_014638139.1\|1207780_1209070_-	LlaJI family restriction endonuclease	M1PG77	Streptococcus_phage	2.9e-252	100.0
WP_148256226.1\|1209083_1210856_-	AAA domain-containing protein	M1NSM1	Streptococcus_phage	0.0e+00	100.0
WP_014638141.1\|1210914_1211982_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	1.3e-200	100.0
WP_014638142.1\|1211974_1212703_-	site-specific DNA-methyltransferase	M1Q227	Streptococcus_phage	3.2e-139	100.0
WP_014638143.1\|1212704_1212905_-	helix-turn-helix transcriptional regulator	M1PLN4	Streptococcus_phage	1.6e-29	100.0
WP_014638144.1\|1213041_1213731_+	helix-turn-helix transcriptional regulator	M1PG82	Streptococcus_phage	4.8e-129	100.0
WP_014638145.1\|1213733_1213961_+	hypothetical protein	M1NSM5	Streptococcus_phage	4.1e-37	100.0
WP_014638147.1\|1214083_1215499_+	Y-family DNA polymerase	M1Q231	Streptococcus_phage	2.1e-272	100.0
WP_014638148.1\|1215495_1215864_+	hypothetical protein	M1PLN9	Streptococcus_phage	3.6e-62	100.0
WP_014638149.1\|1215850_1216150_+	hypothetical protein	M1PG86	Streptococcus_phage	4.3e-50	100.0

DBSCAN-SWA_4

1235990 : 1289557

Streptococcus_phage(50.0%)

transposase,bacteriocin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162467804.1\|1235990_1237247_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	7.1e-171	72.4
WP_002937198.1\|1238583_1238823_-	D-alanine--poly(phosphoribitol) ligase subunit DltC	NA	NA	NA	NA
WP_011922177.1\|1238865_1240107_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	4.6e-21	29.3
WP_014638170.1\|1240103_1241639_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	A0A2K9KZV5	Tupanvirus	4.4e-37	26.6
WP_079254948.1\|1241655_1241781_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA
WP_014638171.1\|1242244_1242577_-	hypothetical protein	NA	NA	NA	NA
WP_014638172.1\|1242767_1243133_-	hypothetical protein	NA	NA	NA	NA
WP_014638173.1\|1243574_1243889_-	hypothetical protein	NA	NA	NA	NA
WP_014638174.1\|1244293_1244665_-	hypothetical protein	NA	NA	NA	NA
WP_014638175.1\|1245038_1245257_-	hypothetical protein	NA	NA	NA	NA
WP_041179218.1\|1245894_1247670_-	S-layer protein	NA	NA	NA	NA
WP_153308533.1\|1248667_1248823_-	hypothetical protein	NA	NA	NA	NA
WP_014638186.1\|1251171_1251876_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_014638187.1\|1252224_1253253_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002941715.1\|1253316_1253790_+	arginine repressor	NA	NA	NA	NA
WP_014638188.1\|1254079_1258351_-	family 16 glycosylhydrolase	NA	NA	NA	NA
WP_014638189.1\|1260321_1261824_-	YfcC family protein	NA	NA	NA	NA
WP_014638190.1\|1262166_1263114_-	carbamate kinase	NA	NA	NA	NA
WP_014638191.1\|1263231_1264245_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_002941721.1\|1264263_1264704_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_024386613.1\|1264703_1265936_-	arginine deiminase	NA	NA	NA	NA
WP_014638193.1\|1266194_1266890_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_014638194.1\|1267547_1268465_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.9e-110	67.7
WP_002937257.1\|1268461_1269436_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.8e-145	78.1
WP_014638195.1\|1269432_1270320_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.9e-06	29.0
WP_002937263.1\|1270341_1270719_-	RidA family protein	NA	NA	NA	NA
WP_014638197.1\|1272419_1273739_-	MATE family efflux transporter	NA	NA	NA	NA
WP_014638198.1\|1273965_1275312_-\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	1.8e-55	31.2
WP_041179219.1\|1275326_1276508_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_014638200.1\|1276504_1277002_-	DUF5590 domain-containg protein	NA	NA	NA	NA
WP_014638201.1\|1277303_1277753_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_014638202.1\|1277815_1278361_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_014638203.1\|1278460_1279573_-	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	2.5e-215	97.8
WP_014638205.1\|1280867_1281098_-	hypothetical protein	NA	NA	NA	NA
WP_014638206.1\|1281113_1281323_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_014638207.1\|1281339_1281591_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_014638208.1\|1281889_1284043_+	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	4.7e-45	28.8
WP_014638209.1\|1284053_1285412_+\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA
WP_014638210.1\|1285513_1285675_+\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA
WP_014638211.1\|1285842_1287186_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_014638212.1\|1287196_1287937_-	response regulator transcription factor	NA	NA	NA	NA
WP_014637301.1\|1288303_1289557_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	9.0e-182	99.7

DBSCAN-SWA_5

1348312 : 1357018

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014638241.1\|1348312_1349668_-	DNA (cytosine-5-)-methyltransferase	A0A141E1L1	Streptococcus_phage	6.8e-127	55.9
WP_000822795.1\|1349816_1350635_-	replication initiator protein A	A0A286QNA4	Streptococcus_phage	4.9e-11	36.6
WP_014638242.1\|1351223_1352012_-	aminoglycoside nucleotidyltransferase ANT(9)	NA	NA	NA	NA
WP_002294507.1\|1352144_1352672_-	adenine phosphoribosyltransferase	A0A1X9I6E2	Streptococcus_phage	1.9e-93	100.0
WP_002294505.1\|1352715_1353579_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	A0A1X9I6F2	Streptococcus_phage	8.7e-168	100.0
WP_001038796.1\|1353883_1354621_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	E4ZFQ0	Streptococcus_phage	2.4e-134	99.6
WP_001809736.1\|1354745_1354841_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA
WP_014638243.1\|1355101_1355272_-	hypothetical protein	A0A1X9I6E4	Streptococcus_phage	1.3e-22	98.2
WP_014638244.1\|1355662_1357018_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	E4ZFI6	Streptococcus_phage	4.4e-251	97.8

DBSCAN-SWA_6

1371847 : 1389004

Streptococcus_phage(92.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014638258.1\|1371847_1373674_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.3e-24	27.7
WP_014638259.1\|1373703_1374435_-	tyrosine protein phosphatase	NA	NA	NA	NA
WP_014638260.1\|1374473_1375160_-	tyrosine-protein kinase	A0A1X9I5D6	Streptococcus_phage	8.0e-108	94.4
WP_014638261.1\|1375169_1375859_-	capsular polysaccharide biosynthesis protein CpsC	A0A1X9I5E1	Streptococcus_phage	1.2e-108	92.6
WP_014638262.1\|1375874_1377314_-	LCP family protein	A0A1X9I5X1	Streptococcus_phage	2.9e-208	91.9
WP_014638263.1\|1377415_1378150_-	peroxide stress protein YaaA	A0A1X9I5I0	Streptococcus_phage	7.0e-118	97.7
WP_014638264.1\|1378272_1379532_+	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	1.7e-241	99.5
WP_014638265.1\|1379630_1380482_-	DegV family protein	A0A1X9I5J4	Streptococcus_phage	4.5e-153	98.6
WP_014638266.1\|1380608_1381013_+	TetR/AcrR family transcriptional regulator	A0A1X9I6A2	Streptococcus_phage	2.1e-63	97.8
WP_162467806.1\|1381168_1382423_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	2.8e-127	56.4
WP_014638267.1\|1382432_1383242_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	2.2e-133	96.6
WP_014638268.1\|1383251_1384490_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.1e-219	97.8
WP_014638269.1\|1384554_1385631_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	5.7e-193	98.9
WP_024411592.1\|1385792_1388306_-	bifunctional DnaQ family exonuclease/ATP-dependent helicase	A0A1X9I5C8	Streptococcus_phage	0.0e+00	98.5
WP_014638271.1\|1388368_1389004_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	1.5e-124	99.1

DBSCAN-SWA_7

2146222 : 2163089

Streptococcus_phage(71.43%)

integrase

attL 2151268:2151288|attR 2159922:2159942

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029171263.1\|2146222_2147059_-	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	2.2e-22	32.9
WP_014638849.1\|2147058_2147598_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_014638851.1\|2148575_2149859_-	insulinase family protein	NA	NA	NA	NA
WP_014638852.1\|2149855_2151109_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	7.7e-234	99.8
2151268:2151288	attL	NA	NA	NA	NA
WP_148256224.1\|2151615_2151942_-	DUF1492 domain-containing protein	NA	NA	NA	NA
WP_024414275.1\|2152107_2152347_-	hypothetical protein	NA	NA	NA	NA
WP_014638854.1\|2152337_2152973_-	ATP-binding protein	A0A1X9I6C4	Streptococcus_phage	1.3e-40	45.9
WP_014638855.1\|2152985_2153792_-	DnaD domain protein	A3F622	Streptococcus_phage	1.0e-53	53.8
WP_014638856.1\|2153778_2154063_-	hypothetical protein	A0A1X9I5U9	Streptococcus_phage	2.7e-41	90.3
WP_002936163.1\|2154052_2154391_-	hypothetical protein	A0A1X9I5Z6	Streptococcus_phage	6.2e-45	92.4
WP_014638857.1\|2154548_2154752_-	hypothetical protein	A0A1X9I5T6	Streptococcus_phage	7.2e-25	80.6
WP_014638859.1\|2155521_2156151_-	Rha family transcriptional regulator	A0A192Y918	Salmonella_phage	7.5e-12	30.3
WP_002936168.1\|2156162_2156369_-	helix-turn-helix transcriptional regulator	A0A1S5SE31	Streptococcus_phage	4.3e-09	59.6
WP_002936170.1\|2156386_2156587_-	transcriptional regulator	NA	NA	NA	NA
WP_002936171.1\|2156790_2157297_+	helix-turn-helix transcriptional regulator	A0A1X9I723	Streptococcus_phage	1.8e-16	68.3
WP_013730692.1\|2157750_2158581_+	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	1.2e-89	62.1
WP_014638860.1\|2158746_2159919_+\|integrase	site-specific integrase	A0A1X9I5Y5	Streptococcus_phage	3.4e-215	96.4
WP_014638861.1\|2160056_2160440_+	S4 domain-containing protein YaaA	A0A1X9I5V8	Streptococcus_phage	2.3e-35	93.7
2159922:2159942	attR	NA	NA	NA	NA
WP_014638862.1\|2160442_2161537_+	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_014638863.1\|2161607_2163089_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	6.2e-97	41.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017621

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection