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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017950 Streptococcus suis ST1, complete sequence 4 crisprs DinG,PrimPol,csn2,cas2,cas1,cas9,csa3,cas3,DEDDh 5 2 9 1

Results visualization

1. NC_017950
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017950_1 213954-214050 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017950_2 680888-680982 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017950_3 1532274-1532366 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017950_4 1773477-1773738 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_017950_1 1.1|213978|49|NC_017950|CRISPRCasFinder 213978-214026 49 NC_017950.1 213488-213536 0 1.0
NC_017950_2 2.1|680911|49|NC_017950|CRISPRCasFinder 680911-680959 49 NC_017950.1 680003-680051 0 1.0
NC_017950_2 2.1|680911|49|NC_017950|CRISPRCasFinder 680911-680959 49 NC_017950.1 680303-680351 0 1.0
NC_017950_2 2.1|680911|49|NC_017950|CRISPRCasFinder 680911-680959 49 NC_017950.1 680603-680651 0 1.0
NC_017950_3 3.1|1532297|47|NC_017950|CRISPRCasFinder 1532297-1532343 47 NC_017950.1 705743-705789 0 1.0
NC_017950_3 3.1|1532297|47|NC_017950|CRISPRCasFinder 1532297-1532343 47 NC_017950.1 1127617-1127663 0 1.0
NC_017950_3 3.1|1532297|47|NC_017950|CRISPRCasFinder 1532297-1532343 47 NC_017950.1 1532734-1532780 0 1.0
NC_017950_3 3.1|1532297|47|NC_017950|CRISPRCasFinder 1532297-1532343 47 NC_017950.1 1755224-1755270 0 1.0
NC_017950_3 3.1|1532297|47|NC_017950|CRISPRCasFinder 1532297-1532343 47 NC_017950.1 1975244-1975290 0 1.0
NC_017950_4 4.2|1773655|59|NC_017950|PILER-CR 1773655-1773713 59 NC_017950.1 1773418-1773476 0 1.0
NC_017950_3 3.1|1532297|47|NC_017950|CRISPRCasFinder 1532297-1532343 47 NC_017950.1 140425-140471 1 0.979
NC_017950_4 4.2|1773655|59|NC_017950|PILER-CR 1773655-1773713 59 NC_017950.1 166137-166195 1 0.983
NC_017950_4 4.2|1773655|59|NC_017950|PILER-CR 1773655-1773713 59 NC_017950.1 1707768-1707826 1 0.983
NC_017950_2 2.1|680911|49|NC_017950|CRISPRCasFinder 680911-680959 49 NC_017950.1 681211-681259 2 0.959
NC_017950_3 3.1|1532297|47|NC_017950|CRISPRCasFinder 1532297-1532343 47 NC_017950.1 643395-643441 2 0.957
NC_017950_4 4.1|1773535|62|NC_017950|PILER-CR 1773535-1773596 62 NC_017950.1 1773739-1773800 2 0.968
NC_017950_4 4.2|1773655|59|NC_017950|PILER-CR 1773655-1773713 59 NC_017950.1 1808215-1808273 2 0.966

1. spacer 1.1|213978|49|NC_017950|CRISPRCasFinder matches to position: 213488-213536, mismatch: 0, identity: 1.0

ttccaaatatgcaggttcgggctaaaatagtccactggactattttact	CRISPR spacer
ttccaaatatgcaggttcgggctaaaatagtccactggactattttact	Protospacer
*************************************************

2. spacer 2.1|680911|49|NC_017950|CRISPRCasFinder matches to position: 680003-680051, mismatch: 0, identity: 1.0

tggtatgaagctactcgtcaatcagatggcagctataagttaactgtta	CRISPR spacer
tggtatgaagctactcgtcaatcagatggcagctataagttaactgtta	Protospacer
*************************************************

3. spacer 2.1|680911|49|NC_017950|CRISPRCasFinder matches to position: 680303-680351, mismatch: 0, identity: 1.0

tggtatgaagctactcgtcaatcagatggcagctataagttaactgtta	CRISPR spacer
tggtatgaagctactcgtcaatcagatggcagctataagttaactgtta	Protospacer
*************************************************

4. spacer 2.1|680911|49|NC_017950|CRISPRCasFinder matches to position: 680603-680651, mismatch: 0, identity: 1.0

tggtatgaagctactcgtcaatcagatggcagctataagttaactgtta	CRISPR spacer
tggtatgaagctactcgtcaatcagatggcagctataagttaactgtta	Protospacer
*************************************************

5. spacer 3.1|1532297|47|NC_017950|CRISPRCasFinder matches to position: 705743-705789, mismatch: 0, identity: 1.0

ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	CRISPR spacer
ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	Protospacer
***********************************************

6. spacer 3.1|1532297|47|NC_017950|CRISPRCasFinder matches to position: 1127617-1127663, mismatch: 0, identity: 1.0

ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	CRISPR spacer
ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	Protospacer
***********************************************

7. spacer 3.1|1532297|47|NC_017950|CRISPRCasFinder matches to position: 1532734-1532780, mismatch: 0, identity: 1.0

ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	CRISPR spacer
ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	Protospacer
***********************************************

8. spacer 3.1|1532297|47|NC_017950|CRISPRCasFinder matches to position: 1755224-1755270, mismatch: 0, identity: 1.0

ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	CRISPR spacer
ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	Protospacer
***********************************************

9. spacer 3.1|1532297|47|NC_017950|CRISPRCasFinder matches to position: 1975244-1975290, mismatch: 0, identity: 1.0

ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	CRISPR spacer
ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	Protospacer
***********************************************

10. spacer 4.2|1773655|59|NC_017950|PILER-CR matches to position: 1773418-1773476, mismatch: 0, identity: 1.0

ggcagatttgttcgtgtattacactccaaatctgacctaatcaactgtgcgggggtggg	CRISPR spacer
ggcagatttgttcgtgtattacactccaaatctgacctaatcaactgtgcgggggtggg	Protospacer
***********************************************************

11. spacer 3.1|1532297|47|NC_017950|CRISPRCasFinder matches to position: 140425-140471, mismatch: 1, identity: 0.979

ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	CRISPR spacer
ttaggcaaggcgaattaacgaagtaataaaagaaaaactaaatgacg	Protospacer
*************.*********************************

12. spacer 4.2|1773655|59|NC_017950|PILER-CR matches to position: 166137-166195, mismatch: 1, identity: 0.983

ggcagatttgttcgtgtattacactccaaatctgacctaatcaactgtgcgggggtggg	CRISPR spacer
ggcagatttgttcgtgttttacactccaaatctgacctaatcaactgtgcgggggtggg	Protospacer
***************** *****************************************

13. spacer 4.2|1773655|59|NC_017950|PILER-CR matches to position: 1707768-1707826, mismatch: 1, identity: 0.983

ggcagatttgttcgtgtattacactccaaatctgacctaatcaactgtgcgggggtggg	CRISPR spacer
ggcagatttgttcgtgttttacactccaaatctgacctaatcaactgtgcgggggtggg	Protospacer
***************** *****************************************

14. spacer 2.1|680911|49|NC_017950|CRISPRCasFinder matches to position: 681211-681259, mismatch: 2, identity: 0.959

tggtatgaagctactcgtcaatcagatggcagctataagttaactgtta	CRISPR spacer
tggtatgaagctactcgtcagtcagatggcagttataagttaactgtta	Protospacer
********************.***********.****************

15. spacer 3.1|1532297|47|NC_017950|CRISPRCasFinder matches to position: 643395-643441, mismatch: 2, identity: 0.957

ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	CRISPR spacer
ttaggcaaggcaaattaacgaagtaataaaagaaaaactaaatgacg	Protospacer
***********.*.*********************************

16. spacer 4.1|1773535|62|NC_017950|PILER-CR matches to position: 1773739-1773800, mismatch: 2, identity: 0.968

taccacaatccattcttgcatatacttcccctcctttcaatcaagagttataatactgat	CRISPR spacer
taccacaatccattcttgcatatacttcccctcctttcaatcaagagttataatactgat	Protospacer
************************************************************

17. spacer 4.2|1773655|59|NC_017950|PILER-CR matches to position: 1808215-1808273, mismatch: 2, identity: 0.966

ggcagatttgttcgtgtattacactccaaatctgacctaatcaactgtgcgggggtggg	CRISPR spacer
ggcagatttgttcgtgttttacactccaaatctgacctaatcaactgtgcggggggggg	Protospacer
***************** ************************************* ***

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017950_4 4.2|1773655|59|NC_017950|PILER-CR 1773655-1773713 59 MK448846 Streptococcus phage Javan122, complete genome 2020-2078 2 0.966
NC_017950_3 3.1|1532297|47|NC_017950|CRISPRCasFinder 1532297-1532343 47 NC_012923 Streptococcus suis BM407 plasmid pBM407, complete sequence 14845-14891 4 0.915

1. spacer 4.2|1773655|59|NC_017950|PILER-CR matches to MK448846 (Streptococcus phage Javan122, complete genome) position: , mismatch: 2, identity: 0.966

ggcagatttgttcgtgtattacactccaaatctgacctaatcaactgtgcgggggtggg	CRISPR spacer
ggcagatttgttcgtgttttacactccaaatctaacctaatcaactgtgcgggggtggg	Protospacer
***************** ***************.*************************

2. spacer 3.1|1532297|47|NC_017950|CRISPRCasFinder matches to NC_012923 (Streptococcus suis BM407 plasmid pBM407, complete sequence) position: , mismatch: 4, identity: 0.915

ttaggcaaggcgagttaacgaagtaataaaagaaaaactaaatgacg	CRISPR spacer
tacggcaaagcgagttaacgaagtaataaaagaaaaactaaatgact	Protospacer
*  *****.************************************* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 329200 : 390230 48 Sulfolobus_monocaudavirus(30.0%) tRNA,transposase,holin,protease NA
DBSCAN-SWA_2 1077542 : 1133018 49 Streptococcus_phage(23.08%) transposase,holin,protease NA
DBSCAN-SWA_3 1140668 : 1154469 16 Streptococcus_phage(93.75%) transposase NA
DBSCAN-SWA_4 1235502 : 1247821 9 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_5 1298393 : 1363656 78 Streptococcus_phage(94.55%) integrase,capsid,portal,tail,holin,protease,tRNA,terminase attL 1298247:1298266|attR 1337338:1337357
DBSCAN-SWA_6 1406799 : 1451336 49 Sulfolobus_monocaudavirus(17.65%) tRNA,transposase,protease NA
DBSCAN-SWA_7 1465673 : 1504866 34 Sulfolobus_monocaudavirus(25.0%) transposase,protease NA
DBSCAN-SWA_8 1620419 : 1682734 56 Sulfolobus_monocaudavirus(23.08%) integrase,transposase,protease attL 1609784:1609799|attR 1678754:1678769
DBSCAN-SWA_9 2012121 : 2027292 15 Streptococcus_phage(30.0%) tRNA,transposase NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_017950.1|WP_014735929.1|1085091_1085298_+|hypothetical-protein 1085091_1085298_+ 68 aa aa NA NA NA 1077542-1133018 yes