CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017553	Pantoea ananatis PA13 plasmid PAGR_p, complete sequence	0 crisprs	NA	0	0	0	0
NC_017554	Pantoea ananatis PA13, complete sequence	2 crisprs	DEDDh,RT,cas3,DinG,csa3	2	12	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017554_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017554_1

3917750-3918780

Orphan

Consensus_repeat	Method
GTCTGGGTACTGCCGTAACCGGC	CRISPRCasFinder

21 spacers

The CRISPR arrays of NC_017554_1

>merge|NC_017554|1|3917750-3918780|CRISPRCasFinder
GTTGAGGTGCTGCCGTAGCCGGTTGTCAGCACACTCTGTTCGCGCGCCGTCTGCGTACTGCCGTAGCCCGCCGTCAGGCTACTGTGATAACTGGCGGTCTGGGTGCTGCCGTAACCTGCAATGATTGAGCTGTCCGAGCCTGCCGTGCCGGTGCTGCCGTACCCGGCAGTGAGGTCACTGCCTTCTCTCGCCGTCTGGGTACTGCCGTAGCCCGCCGTTAGCACACTGTTGTAGCTGGCTGTCTGCGTGCTGCCATAGCCTGCGATCAGTGAACTATTTGCCCCGGCTGTAGACGTACTGCCATAGCCGGTGATGAGATCGCTTTCGTTCTGCGCGGTCTGCGTACTGCCGTAACCCGCTGTCAGCGTGCTACCGTAACCCGCTGTCTGGGTACTGCCATAGCCCGCGATCAATGAACTTTCATAGCCTGCCGTAGAGGTACTACCATAACCGGCCGTAAGATCGCTGCCCTTCTGCGCGGTCTGGGTACTGCCGTAACCGGCTGTCAGCGAGCTGTCTTCGCCCGCCGTCTGGGTACTGCCGTAACCGGCGATCAGAGAGCTGTCGTCACCCGCCGTACCGGTACTGCCGTAACCGGCCGTAAGGTCGCTGCCCTTCTGCGCGGTCTGGGTGCTGCCGTAACCGGCTGTCTGAGTGCTTTCTTCCCCGGCCGTCTGGGTGCTGCCGTAGCCCGCGATTAGTGAACTGTCGGCACCCGCCGTGCCGGTACTGCCATAACCCGCGGTAAGATCGCTGCCCTTCTGCGCGGTCTGCGTGCTGCCGTAACCGGCTGTCAGCGAGCTGTCTTCGCCCGCCGTCTGGGTACTGCCGTAACCGGCGATCAGGGAGCTGTCGTCACCCGCCGTGCCGGTACTGCCGTAACCGGCGGTGAGATCGCTGCCTTTCATGCCGGTCTGCGTGCTGCCGTAACCCGCCATCTGGCTGCTCTCTTCACCTGCGGTTTGGGTACTGCCGTAGCCCGCGACTAATGTGCTGTCTGATCCCGCTGTACCGGTGCTACCATAACCGGC

>NC_017554|1|1|3917750-3918780|CRISPRCasFinder
GTTGAGGTGCTGCCGTAGCCGGT	TGTCAGCACACTCTGTTCGCGCGCC
GTCTGCGTACTGCCGTAGCCCGC	CGTCAGGCTACTGTGATAACTGGCG
GTCTGGGTGCTGCCGTAACCTGC	AATGATTGAGCTGTCCGAGCCTGCC
GTGCCGGTGCTGCCGTACCCGGC	AGTGAGGTCACTGCCTTCTCTCGCC
GTCTGGGTACTGCCGTAGCCCGC	CGTTAGCACACTGTTGTAGCTGGCT
GTCTGCGTGCTGCCATAGCCTGC	GATCAGTGAACTATTTGCCCCGGCT
GTAGACGTACTGCCATAGCCGGT	GATGAGATCGCTTTCGTTCTGCGCG
GTCTGCGTACTGCCGTAACCCGC	TGTCAGCGTGCTACCGTAACCCGCT
GTCTGGGTACTGCCATAGCCCGC	GATCAATGAACTTTCATAGCCTGCC
GTAGAGGTACTACCATAACCGGC	CGTAAGATCGCTGCCCTTCTGCGCG
GTCTGGGTACTGCCGTAACCGGC	TGTCAGCGAGCTGTCTTCGCCCGCC
GTCTGGGTACTGCCGTAACCGGC	GATCAGAGAGCTGTCGTCACCCGCC
GTACCGGTACTGCCGTAACCGGC	CGTAAGGTCGCTGCCCTTCTGCGCG
GTCTGGGTGCTGCCGTAACCGGC	TGTCTGAGTGCTTTCTTCCCCGGCC
GTCTGGGTGCTGCCGTAGCCCGC	GATTAGTGAACTGTCGGCACCCGCC
GTGCCGGTACTGCCATAACCCGC	GGTAAGATCGCTGCCCTTCTGCGCG
GTCTGCGTGCTGCCGTAACCGGC	TGTCAGCGAGCTGTCTTCGCCCGCC
GTCTGGGTACTGCCGTAACCGGC	GATCAGGGAGCTGTCGTCACCCGCC
GTGCCGGTACTGCCGTAACCGGC	GGTGAGATCGCTGCCTTTCATGCCG
GTCTGCGTGCTGCCGTAACCCGC	CATCTGGCTGCTCTCTTCACCTGCG
GTTTGGGTACTGCCGTAGCCCGC	GACTAATGTGCTGTCTGATCCCGCT
GTACCGGTGCTACCATAACCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017554.1\|WP_014595259.1\|3919817_3921155_-\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NC_017554.1\|WP_014606663.1\|3925393_3926230_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|179169
NC_017554.1\|WP_014595250.1\|3932648_3934013_-\|ethanolamine-permease	unknown	unknown	gnl\|CDD\|129986
NC_017554.1\|WP_013024496.1\|3905359_3905806_+\|DUF1640-domain-containing-protein	unknown	unknown	gnl\|CDD\|369525
NC_017554.1\|WP_014595262.1\|3913301_3914069_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NC_017554.1\|WP_014606665.1\|3927490_3928570_+\|glycoside-hydrolase-family-88-protein	unknown	unknown	gnl\|CDD\|226678
NC_017554.1\|WP_014595264.1\|3910688_3912086_-\|MHS-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_017554.1\|WP_014606666.1\|3928599_3931089_+\|hypothetical-protein	unknown	unknown	unknown
NC_017554.1\|WP_014606661.1\|3921165_3922902_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|227319
NC_017554.1\|WP_014595268.1\|3906682_3907189_-\|RcnB-family-protein	unknown	unknown	gnl\|CDD\|378715
NC_017554.1\|WP_014606657.1\|3907320_3908463_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_017554.1\|WP_014606664.1\|3926285_3927047_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|181605
NC_017554.1\|WP_014606658.1\|3908933_3909602_+\|YecA-family-protein	unknown	unknown	gnl\|CDD\|236680
NC_017554.1\|WP_014606662.1\|3924376_3924973_+\|hypothetical-protein	unknown	unknown	unknown
NC_017554.1\|WP_044042459.1\|3912228_3913260_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|182130
NC_017554.1\|WP_014595257.1\|3923407_3924367_+\|hypothetical-protein	unknown	unknown	unknown
NC_017554.1\|WP_013024487.1\|3914393_3915647_+\|D-galactonate-dehydratase-family-member-RspA	unknown	unknown	gnl\|CDD\|239438
NC_017554.1\|WP_014606667.1\|3931244_3932585_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223238
NC_017554.1\|WP_024472367.1\|3905828_3906536_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_017554.1\|WP_013024491.1\|3909878_3910589_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097

Protein	Function_ID	Function_description	E-value
NC_017554.1\|WP_014595259.1\|3919817_3921155_-\|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.10133e-115
NC_017554.1\|WP_014595250.1\|3932648_3934013_-\|ethanolamine-permease	gnl\|CDD\|129986	TIGR00908, putative_ethanolamine_permease, ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. [Transport and binding proteins, Amino acids, peptides and amines].	1.3217e-174
NC_017554.1\|WP_013024496.1\|3905359_3905806_+\|DUF1640-domain-containing-protein	gnl\|CDD\|369525	pfam07798, DUF1640, Protein of unknown function (DUF1640). This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured.	3.82631e-07
NC_017554.1\|WP_014595262.1\|3913301_3914069_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.4571e-101
NC_017554.1\|WP_014606665.1\|3927490_3928570_+\|glycoside-hydrolase-family-88-protein	gnl\|CDD\|226678	COG4225, COG4225, Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only].	2.8318e-95
NC_017554.1\|WP_014595264.1\|3910688_3912086_-\|MHS-family-MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.01622e-144
NC_017554.1\|WP_014606661.1\|3921165_3922902_-\|ABC-transporter-permease-subunit	gnl\|CDD\|227319	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism].	1.7098e-177
NC_017554.1\|WP_014595268.1\|3906682_3907189_-\|RcnB-family-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	9.97795e-17
NC_017554.1\|WP_014606657.1\|3907320_3908463_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.91039e-45
NC_017554.1\|WP_014606664.1\|3926285_3927047_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	1.54551e-168
NC_017554.1\|WP_014606658.1\|3908933_3909602_+\|YecA-family-protein	gnl\|CDD\|236680	PRK10396, PRK10396, hypothetical protein; Provisional.	2.83561e-146
NC_017554.1\|WP_014606663.1\|3925393_3926230_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	gnl\|CDD\|179169	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.	0
NC_017554.1\|WP_044042459.1\|3912228_3913260_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NC_017554.1\|WP_014606667.1\|3931244_3932585_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	2.24036e-149
NC_017554.1\|WP_013024487.1\|3914393_3915647_+\|D-galactonate-dehydratase-family-member-RspA	gnl\|CDD\|239438	cd03322, RspA, The starvation sensing protein RspA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.	1.34263e-173
NC_017554.1\|WP_024472367.1\|3905828_3906536_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.54081e-26
NC_017554.1\|WP_013024491.1\|3909878_3910589_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	5.11816e-52

>NC_017554.1|WP_013024487.1|3914393_3915647_+|D-galactonate-dehydratase-family-member-RspA
MSNLFITNVKTILTAPGGIDLVVVKIETNEPGLYGLGCATFTQRIYAVQSAIDEYLAPFLIGKDPARIEDIWQSAAVSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLEDPVAPENTEWLKMLRQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQGYAYVNDKPGLGIDINEALAAKFPCEGGNPTWTMARTPDGTVWRP
>NC_017554.1|WP_014595262.1|3913301_3914069_-|SDR-family-oxidoreductase
MTAMFDLTGKTALITGSSRGLGFAYAEALAAAGAEVILNGTREAVLNEAVEQLKNKGYRVSGRVFDVTCESAIEQVFASLDEQGIAVDIVINNAGIQYRKPMLELELENWQKVIDTNLTSAFLVSRAAAKRMIARDRGGKIINVGSLTSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNSALVDDARFDSWVKSSNPSQRWGRPEEVAGTAVFLSSPASDYINGQIIYVDGGWLAVL
>NC_017554.1|WP_044042459.1|3912228_3913260_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MTHACVAKGKKEIAVEQRELKYSDDDVVVQVECGGICGSDIHYYHEGRAGLSVIKQPLVIGHEFVGRIFQAPAASGLEPGQKVAINPSQPCGQCEYCRAGKQNACATMRFMGSAQFTPHVNGGFAQYVVVPAKQCVAYDEQVPASVMAVAEPTAVVIHALNVAGSIVGKRVLVMGAGPIGALAIAAASASGAAEIVAFDPSERCRRIALEMGADSAVDASDRAAVARYGENRGYFDVTLEASGAEAAIESSILVTRPGGVVVQIGMGKSPLNFPVAQMLVKEISWKGSFRFIDEFDVAVKWLEKGIIDPRPILSGNYAYHDIEAALKAASDKTQHSKVLVQFS
>NC_017554.1|WP_014595264.1|3910688_3912086_-|MHS-family-MFS-transporter
MSHLNTNTTERNTSDLVRASVSGWLGTTLEFMDFQLYSLGAALVFHEVFFPEQSGAMALILAMGTYGAGYIARIVGAVFFGKMGDRVGRKKVLFITIALMGVCTTLIGVLPTYQQVGILAPLLLVALRIIQGLGAGAEISGASTMLAEYAPKGKKGIIASLVAMGTNCGTLSATAIWAAMFFFFTNDEVIAWAWRIPFLASFVVMGFAIWLRFNLKESPVFENVAESATVKPHDQPAQSVFQLIKGKAFWIATGLRFGQAGNSGIIQTFLAGYMVQTLLFNKAVPTDAIMVSSVIGFMTIPLIGWLSDRIGRRIPYRILTLGSIILAYPMISLIVDNAQAVSTIMVCLIVIHNIAVLGQAAIEGITMAEMFGSRNRFAQMAISKEIGGLFATGLGPLLAGIFCQLTGTWYPIAIMLIGYSCIGLLASLIMPEVVDRDLTAEADASGGVPDGCHPVAPSIRAGSGE
>NC_017554.1|WP_013024491.1|3909878_3910589_-|FadR-family-transcriptional-regulator
MSIKSIQKQNVVNEVFEQIKAKLLDGSWSAGTRLPSEAELTHSFNVSRVSIRSAVQRLRDLGIVITRQGSGSYVCEDFSPQMLNHNARPLMHLSREAFNDMMVFRQTVEFKCVELAVEHATEEDIGLLEQALNNMLINKGDYKKYSEADYEFHLAIIRASHNSVFYNVMKSIKDIYYYYLEELNRSLGITLESVEAHIKVFMAIKNRDASSAVQVLNEAMKHNVVAIDMIKKEEGE
>NC_017554.1|WP_014606658.1|3908933_3909602_+|YecA-family-protein
MKEGPLSEKELQWLEDMLEKYGSEASILDVSELDGLLTAVLSGPTTVEPSRWLVALWGGEKHIPKWSNEREMTRFMELSFQHMNDIADRLSEFPEQFEPLFGVREMEGLEFTVVEEWCYGYMRGVALTDWSALPAELQDSLDAIALHGTEENLEKVDALTPEEMESSIDAIRPAALALHDYWISQPEAIPQVQQPVTAEKQPGRNDPCPCGSGRKYKQCCLH
>NC_017554.1|WP_014606657.1|3907320_3908463_-|serine-hydrolase
MISALLLAACGTLSQTSAPAGDKLYLTHSDFHDNLDDLVRHYMQRKQVSGISIAIIHHLNPTLFYSAGVTDDVHRYPITPETLFALGSLSKGVTAEVIIELVNEGQLHWSDTLADLLPSDVRLSQDARQITLLQLVTHTSGLPRQDMDLPMFMQFMGYLRSGQNFYGNLDSDDVLEYLADFSAPRQRGAQYSNLGYALLGYILRERCHSDIETLAHQRIFRPLGMNNTSFVPERLSGFSTRALGHAGDQPKLIPRGDLTPDWRFQRNMVAAGSLYSNARDLSVYLRAHLTAGSDPARNRAFAEINKGVYQQGAQTQNIAWVTDRLAGRNITYQVGYIGGYSAFIGFDKQAGNAIVVLQNAFTWSNYLGITLLLNLAEKDR
>NC_017554.1|WP_014595268.1|3906682_3907189_-|RcnB-family-protein
MRRTQIAFISAGLLFGSLSLIPAAQAAGETTDNVPPPPQIQPANPTAQPGDNNAQPGAAAPAQPQAPMSSDSNDGITPTTPSQSAGNPGKPNYDLSTIIIDYKEHKIGDTVPDKYRSKTYTITEWQKRNLPAPQPDTHWAYINANYILITNDTGKIVMGKSGDIFFRG
>NC_017554.1|WP_024472367.1|3905828_3906536_-|GNAT-family-N-acetyltransferase
MSQHVNQYGQPVGQSMPDWQPRPLPQREVLQGQVCRLEPFSVASHAEALWQAWSLAEDGRDWTYLSDGPFNDEAAWLTHAATMEASQDPLHFSVIDVETGKAVGTLSLMRVDAQNGVMEVGYVTFSRLLKQTRMATEAHFLLMRYAFEQLGYRRYEWKCDSCNLPSRRAALRLGFRFEGEFRQARVYKGRTRDTSWFSIIDSEWPAVKNGLERWLAEANFTADGRQREKLETLRG
>NC_017554.1|WP_013024496.1|3905359_3905806_+|DUF1640-domain-containing-protein
MTLTMMNTHKAFKRLQRAGINDRQAEAMVDIFSALKQDNALSRADVMQAFQRQNQHIFSLSTQLKKTESCLRTDVDELKADVSVLKTDVAVLKTDVSVLKTDVAELKTDVSVLKTDVGSLKNDMRWVQRLLMIMTTTLLMATIKYVLA
>NC_017554.1|WP_014595259.1|3919817_3921155_-|nitrate/sulfonate/bicarbonate-ABC-transporter-ATP-binding-protein
MLNNPPTLNPDVSNRKPEGRKAVLTVKDIKHGYDKTHGEVLILDDVNLTLQEGEIVGLLGRSGSGKSTLLRIISGLITPGSGAVEYLGKPLNGPAKGVAMVFQTFALFPWLTVLQNVEAGLEALGVEKAERRKRALAAIDLIGLDGFENAYPRELSGGMRQRVGFARALVVDPTLLLMDEPFSALDVLTAETLRTDLLDLWNEGQMPMKSVLIVTHNIEEAVFMCDRILVLSSNPGRVVAEIKVPFGHPRNRLDPAFRRLVDDVYTQMTARPTSDNVKKSLRLGTHLPQVSTNLMAGLIETLAAAPYHGRADMPDVARSLHLEVDELFPIAEVLQSLGFADVREGDIFLTPPARVFAESDTQQRKVMFADHLLRYVPLAALIKTVLDERPGHRAPRMRFEQELEDSLADSAAKETLDSVINWGRYAEIFSYNDQTEYFSLEDVEF
>NC_017554.1|WP_014606661.1|3921165_3922902_-|ABC-transporter-permease-subunit
MNFRFTMLAANRRLLPNVWDAVAFPLIICLIAMVAVGFHQTLMPIDSLKTQAISLDPTNLPEYAMRTTLRMLVAMLASLVFSLIYGTLAAKSRRAEKVLVPILDILQSVPVLGYISFTVTFFIALFPGQVLGVELAAIFALFTSQAWNMTFSFYQSLRTVPADLVEVSRGFHLTGWQRFWKLDAPFAVPGLVWNMMMSMSGGWFFIVASEAITVGNNTFTLPGVGGYLAQAILHKDIHAVGWVLLTMVIVILAYDQLLFRPLVAWADKFRMENTRSGNAPTSWVRDLMRRTRLIHQIFTPLRLLLSALARISWRWPTAATVRFENNTRRASRLGDIVWGAFVILLTLYVVYRVTTYVQIGVTLDEVKHVFTLGLITLLRVTVLILISSLIWVPLGVMIGLRPALAGKIQPVAQFLAAFPANLMFPVFVIMIVHFHLNPDIWLSPLIVLGTQWYILFNVVAGTTAFPNDYKEAAANFHIRGWQWWRQVMLPGIFPYYITGAITASGGAWNASIVSEFVQWGNTQVTAHGLGAYIAQTTAAGDFPKIILGIAVMSLFVTLFNRLLWRPLYVYAESKFRAN
>NC_017554.1|WP_014595257.1|3923407_3924367_+|hypothetical-protein
MALPESYSNNLPDYGLGQRMGMVSADDIDFNALANRLDCTRDFSQVGIIYSDGLAQWLVRPSRRHAQASKSSVSHVIITKVNATNPQVAAKALTETLSKPSLASEITSTMFSCGALVVTGFLAFGSAAAVPLTAGASGVVAGMIIAGGLATGMQCAIGTARLYAIYEGNEDYVAWLDSQSWYVATTTALDVISLAGAGAGLKSAIETYKVMKASSSAKAFEWLKTLSRAERKRITEEIIRAQNPGISNGGIKAAMKAGVYPKRYPAEAIQKSLQRELTSALVNSSAFAGSALTGTLRNPQNIVQSGKYVIGVIQSLSST
>NC_017554.1|WP_014606662.1|3924376_3924973_+|hypothetical-protein
MKYINKIIKLSEKTNKKIEVSGVDELENIKDDMKEKMGMPIGLHTFGAPLIISMVLTVISFSLPQFSFWLFIYDLMGWEQHAVFIGIIAAAFIYVLVLFTTMMMVSRGIYLALRAYIFILILALITALFFLLITMISSISGNNNYSLSFTGALLSIGLSLIALKCLNSEMFYKSCAFILHNRAWRKQLDLQRKTTAFR
>NC_017554.1|WP_014606663.1|3925393_3926230_+|5-dehydro-4-deoxy-D-glucuronate-isomerase
MEVRQSIHSAHANALDTQGLRDEFLIEKIFVPDEFTMVYSHIDRIIVGGVMPVGQAVAIGNDVGKQLGVSYFLERRELGMINIGGPGQVTIDGEDYEIGHREALYIGKGAREVLFSSLAPHRPAKFYYNCAPAHKTLPIRKVTAGDAAAVTLGDNLTSNRRTINKYLVPDVLETCQLSMGLTQLEPGNLWNTMPCHTHERRMEVYLYFDMDDDACVFHMMGEPQETRHLLVHNEQAVISPAWSIHSGVGTKAYTFIWGTVGENQVFDDMDHVSVKDLC
>NC_017554.1|WP_014606664.1|3926285_3927047_+|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MILNAFSLQDKIAVVSGCNTGLGQAMALGLAEAGCNIVGINQVEPDETIKQVTALGRRFLSLKADLRNIDAIPALLDSAIACFDRIDILVNNAGMIRREDAINFSEQDWDDVMDLNIKSLFFMSQAAARHFIAQGDGGKIINIASMLSFQGGIRVPSYTASKSGVMGITRLLANEWAKHRINVNAIAPGYMATDNTQQLRADAQRSAEILDRIPAGRWGKPEDLMGPVVFLASRASDYMNGYTIAVDGGWLAR
>NC_017554.1|WP_014606665.1|3927490_3928570_+|glycoside-hydrolase-family-88-protein
MELLSTARQLDLLLNGFTQLKDEGKFNEPNIDGTAGDYISFAHWEWPQGVGLFGLVRLWELTRRDDIYQIIENWFQQNIQKGLPPLNINTTAPMLQLSLLWAHNRAPHYQAVLDSWADRVMTELPRTPEQGFQHVVSDGINPMEIWDDTLFMVVLFLGHYGVASGRQALVDEAVRQFLLHARYLNDPQTGLWFHGWSFTEKSHFAQARWARGNAWITVGIIEFLELTQLRGGVRDYLLECLKTQINSLITLQSESGAWHTLLDHPDSYEEISATAGFGYGLLKGVRLGYGDERWLQAGLQALGAVRRNIDSSGTVHNVSYGTRMGRTLQFYKDIPLQPTGYGQALAILCLTEGLRHLKK
>NC_017554.1|WP_014606666.1|3928599_3931089_+|hypothetical-protein
MDQNQYCYFPLNQNEAVRYWQLSAISSQRYDVPNAPMSGEMDPFFFLSQHKNFIPHTYPCRMQFQQHYAGKKPTPFGDTTLKNWWFPFGSDRVDLSGFWFRATRIGAQAETYLVAEQGGLYRFRLTTCGAACITLNGGDVAWQADYQRNLESTVEFALMLDAGVNTIAVWFDDLAERDARFFFQLDYVEGAPLQVALATPIEADRVRQMEALLEGMAFEQPTYTGGTVRLCFPIPAPETLNLNIRVQGDFISLDQPVLLNAVLHQGETVAEIAESDALPADFRHFVISMEKDNFHIRRTLGVEICHAEQQAQVPKTADARADEALMHVALHGEYSSVKALARLACGMDDTETQNMLEGVLTPVEECHDCADFTLVPLLWCRIQWADRIAAPVREKMDRAILAFRYWMDEPGNDVQWYFSENHALLFHTAAYLAGSTFPDKTFVRSGRLGSDQAEAGRQRVLAWLDHFEQCEMAEWNSAPYFPIDLKGLTALAALAPDADIVARSQRAILRLLEQIARSSHQGMLTASQGRSYEHTLRAGRSLELSAISRLLWGKGNVGCRFHALPQLALLLKQGKLTHSPELAKVAVWRGDSALEWYFAQGLNRIARLYHYKTRDVAMGSLAGYRWGEWGYQETPIHLRIGETPEAQIWINHPGERLHSGFGRPSYWGGCGTLPRVQQYRGLAIVLFRVHEGQPDFSHAWLPQRYFEDVRCYDKRILLRSGKGMVQISGNRAFQRIAHGPTQHCEVRLPGQETCWLIRLNDDPRLDNLADFEARFAQLTVERREDGTFYVNDPQYGEVFFQPNGCVFGQGRLLDPDSWTISGDSHELPL
>NC_017554.1|WP_014606667.1|3931244_3932585_-|aspartate-aminotransferase-family-protein
MTVRSTIMDTNSFRAENAEALAPAIRQLTDKRSKVLGESYRLFYRNPVHLVRGQGQYLWDQAGKQYLDMYNNVASIGHCHPAVVEAVHQQMMRLNTHTRYLHESILDYSERILATMPAAIDRAMYMCTGSEANDLAIRMAHAWSGGTGIIVSKEAYHGTSALTSGVSPALGSGQPLSSHTRLVASPDFYRIQPADQGAWFAHEIQKQIDDMAAHGIKFAGFLADSIFSSDGVLPGQPGFLKQAIDVVHQNGGIFIADEVQPGFARTGESFWGFARHGVVPDVVTTGKPMGNGIPVSGLMAKAPVMAAFSDSLPYFNTFGGNPVSMAAAHAVMDVIEQESLQAHSLKTGQALLAALQSLQDTYACVGDVRGAGLFIGFELVTDRETKQPDKRLALDLVEALREECVLTSVAGPYGNVLKIRPPLCFQTHDIDWVVSAMDRCLKKLQG
>NC_017554.1|WP_014595250.1|3932648_3934013_-|ethanolamine-permease
MKEKLKPTLGTLRLWGIAVGLVISGEYFGWSYGWGAAGTLGFLVTTFFVAVMYTCFIFSFTELTTAIPQAGGPFAYSRRAFGDTGGLIAGIATLIEFVFAPPAIAMAIGAYLNVQFPEINPKLIAVCAYLVFMGLNIIGVSIAATFELLVTLLAVIELLVFMGVVAPGFSLANFVANGWAGQGTFSLASVSGMFAAIPFAIWFFLAIEGVAMAAEEAKDPRRTIPRAYISGILTLVVLAIGVMVFAGGAGDWRTLSGINDPLPQAMKMLVGNDSRWMHMLVWIGLFGLIASFHGIIMGYSRQFFALAREGYLPPALAKLSRFNTPHRAILAGGVVGILAIFSDGISFQGMSLTAAMITMSVFGAIVMYIMSMLSLFKLRRTAPTLERSYRAPGYPVIPAIALCGSLICLAAMLWFNPEIGALFMAFMVVGYLYFLTTQSRRGTIAQTSVAAEID

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Crispr_ID: NC_017554_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017554_2

4198578-4198669

Orphan

Consensus_repeat	Method
GCCGTTCGCCGTGATGTTGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017554_2

>merge|NC_017554|2|4198578-4198669|CRISPRCasFinder
GCCGTTCGCCGTGATGTTGCTGCCGGCAGACATGTTGCCGCGTGCGTTAACGTCCTGACCCGTTACGGTGCCGTTCGCCGTGACGTTGCTGC

>NC_017554|2|2|4198578-4198669|CRISPRCasFinder
GCCGTTCGCCGTGATGTTGCTGC	CGGCAGACATGTTGCCGCGTGCGTTAACGTCCTGACCCGTTACGGT
GCCGTTCGCCGTGACGTTGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017554.1\|WP_044042486.1\|4193684_4194149_-\|hypothetical-protein	unknown	unknown	unknown
NC_017554.1\|WP_014606846.1\|4199374_4200058_-\|potassium-transporter-TrkH	unknown	unknown	unknown
NC_017554.1\|WP_014606839.1\|4192893_4193688_-\|hypothetical-protein	unknown	unknown	unknown
NC_017554.1\|WP_014606855.1\|4207724_4209020_-\|TcpQ-domain-containing-protein	unknown	unknown	gnl\|CDD\|163460
NC_017554.1\|WP_014606851.1\|4203819_4204323_-\|type-IV-pilus-biogenesis-protein-PilP	unknown	unknown	gnl\|CDD\|274394
NC_017554.1\|WP_014606840.1\|4194160_4194793_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NC_017554.1\|WP_014606837.1\|4190034_4190796_-\|TIGR03747-family-integrating-conjugative-element-membrane-protein	unknown	unknown	gnl\|CDD\|163459
NC_017554.1\|WP_014606849.1\|4201144_4202260_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NC_017554.1\|WP_014606847.1\|4200054_4200540_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381603
NC_017554.1\|WP_024472528.1\|4197682_4197880_+\|hypothetical-protein	unknown	unknown	unknown
NC_017554.1\|WP_014606852.1\|4204309_4205593_-\|type-4b-pilus-protein-PilO2	unknown	unknown	gnl\|CDD\|369114
NC_017554.1\|WP_014606841.1\|4194792_4195323_-\|integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|378552
NC_017554.1\|WP_014606850.1\|4202249_4203812_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|225363
NC_017554.1\|WP_014606853.1\|4205595_4207269_-\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	unknown	unknown	gnl\|CDD\|274177
NC_017554.1\|WP_014606842.1\|4195319_4195937_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381613
NC_017554.1\|WP_014606838.1\|4190782_4192897_-\|type-IV-conjugative-transfer-system-coupling-protein-TraD	unknown	unknown	gnl\|CDD\|274767
NC_017554.1\|WP_014606848.1\|4200544_4201135_-\|type-IV-prepilin	unknown	unknown	gnl\|CDD\|285957
NC_017554.1\|WP_014606854.1\|4207279_4207723_-\|type-IV-pilus-biogenesis-protein-PilM	unknown	unknown	gnl\|CDD\|369356
NC_017554.1\|WP_049792162.1\|4196640_4197330_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_017554.1\|WP_014606843.1\|4195915_4196629_-\|TIGR03759-family-integrating-conjugative-element-protein	unknown	unknown	gnl\|CDD\|274770

Protein	Function_ID	Function_description	E-value
NC_017554.1\|WP_014606852.1\|4204309_4205593_-\|type-4b-pilus-protein-PilO2	gnl\|CDD\|369114	pfam06864, PAP_PilO, Pilin accessory protein (PilO). This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body. This family does not seem to be related to pfam04350.	5.27505e-52
NC_017554.1\|WP_014606838.1\|4190782_4192897_-\|type-IV-conjugative-transfer-system-coupling-protein-TraD	gnl\|CDD\|274767	TIGR03754, conj_TOL_TraD, conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.	0
NC_017554.1\|WP_014606855.1\|4207724_4209020_-\|TcpQ-domain-containing-protein	gnl\|CDD\|163460	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family. This model describes the conserved N-terminal region of a variable length protein family associated with laterally transfered regions flanked by markers of conjugative plasmid integration and/or transposition. Most members of the family have the lipoprotein signal peptide motif. A member of the family from a pathogenicity island in Salmonella enterica serovar Dublin strain was designated PilL for nomenclature consistency with a neighboring gene for the pilin structural protein PilS. However, the species distribution of this protein family tracks much better with markers of conjugal transfer than with markers of PilS-like pilin structure. [Mobile and extrachromosomal element functions, Plasmid functions].	1.58665e-55
NC_017554.1\|WP_014606840.1\|4194160_4194793_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	1.4146e-21
NC_017554.1\|WP_014606837.1\|4190034_4190796_-\|TIGR03747-family-integrating-conjugative-element-membrane-protein	gnl\|CDD\|163459	TIGR03747, conj_TIGR03747, integrating conjugative element membrane protein, PFL_4697 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. [Mobile and extrachromosomal element functions, Plasmid functions].	3.31592e-96
NC_017554.1\|WP_014606843.1\|4195915_4196629_-\|TIGR03759-family-integrating-conjugative-element-protein	gnl\|CDD\|274770	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown. [Mobile and extrachromosomal element functions, Plasmid functions].	9.81473e-96
NC_017554.1\|WP_014606847.1\|4200054_4200540_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381603	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.49794e-39
NC_017554.1\|WP_049792162.1\|4196640_4197330_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00545168
NC_017554.1\|WP_014606841.1\|4194792_4195323_-\|integrating-conjugative-element-protein	gnl\|CDD\|378552	pfam11072, DUF2859, Protein of unknown function (DUF2859). This is a bacterial family of uncharacterized proteins.	6.23885e-58
NC_017554.1\|WP_014606842.1\|4195319_4195937_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381613	cd16892, LT_VirB1-like, VirB1-like subfamily. This subfamily includes VirB1 protein, one of twelve proteins making up type IV secretion systems (T4SS). T4SS are macromolecular assemblies generally composed of VirB1-11 and VirD4 proteins, and are used by bacteria to transport material across their membranes. VirB1 acts as a lytic transglycosylase (LT), and is important with respect to piercing the peptidoglycan layer in the periplasm. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	2.11187e-09
NC_017554.1\|WP_014606853.1\|4205595_4207269_-\|PilN-family-type-IVB-pilus-formation-outer-membrane-protein	gnl\|CDD\|274177	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	6.59743e-100
NC_017554.1\|WP_014606850.1\|4202249_4203812_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	4.17757e-50
NC_017554.1\|WP_014606851.1\|4203819_4204323_-\|type-IV-pilus-biogenesis-protein-PilP	gnl\|CDD\|274394	TIGR03021, pilP_fam, type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP. [Cell envelope, Surface structures].	3.74368e-20
NC_017554.1\|WP_014606848.1\|4200544_4201135_-\|type-IV-prepilin	gnl\|CDD\|285957	pfam08805, PilS, PilS N terminal. Type IV pili are bacterial virulence-associated adhesins that promote bacterial attachment to host cells. In Salmonella typhi, the structural pilin protein PilS interacts with the cystic fibrosis transmembrane conductance regulator. Mutagenesis studies suggest that residues on an alpha-beta loop and the C terminal disulphide-bonded region of PilS might be involved in binding specificity of the pilus.	1.32984e-09
NC_017554.1\|WP_014606854.1\|4207279_4207723_-\|type-IV-pilus-biogenesis-protein-PilM	gnl\|CDD\|369356	pfam07419, PilM, PilM. This family contains the bacterial protein PilM (approximately 150 residues long). PilM is an inner membrane protein that has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body.	2.5874e-20
NC_017554.1\|WP_014606849.1\|4201144_4202260_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	6.95111e-19

>NC_017554.1|WP_024472528.1|4197682_4197880_+|hypothetical-protein
MKAGFRFAALCMFVTFTAMARDIPHVKPLPWHRSGYTGHSGIADTAETPDEHIREEQPRVSRSAV
>NC_017554.1|WP_049792162.1|4196640_4197330_-|hypothetical-protein
MVIALLGTLTASAVLLVRVSNLTIRVNTLDAAFRSGEIGQLSSNVTIMQEKLKTLEKQVSALAPVQDRITSLSTEQLKLSTRVSQLSDAGLSDQQSVQQLQQQLGQLSQTVQTSASVIEALKQQAVTTPKATEPEKAKPQPSQKAVSSPKKAKRSVRHAVMPAAPFELTGIERRGGQTFAVVIPRGVTVISSMRLLSPGDGFMGWTLRALEGNAALFSVNGSAVRLQLQ
>NC_017554.1|WP_014606843.1|4195915_4196629_-|TIGR03759-family-integrating-conjugative-element-protein
MKKTLTAFLILLPLWALASTAQTPAVNSRVAQLQENTSSSLSTQQQAQQWGLSDSDWSRYQTLMKGERGIMSPGLDPLTALGVETDNSAERRRLAELWVKHEYQRTEKELAFQRDLNAAWLRLYPETLAVNMGANAAGIAHDTQGRLALFLKENCSRCDARLAAVLADNRPVDLYLVGIDSDDGLRAWAVKHNIPVEKVRSRQITLNHDNGLWFRYGMGQMPVILQQGETGWQVAAY
>NC_017554.1|WP_014606842.1|4195319_4195937_-|transglycosylase-SLT-domain-containing-protein
MAGRGVLKKAALVLCLVSCACSAADSRQVIPDAYRQIAAAERVPAESLYSLAMAESTRKTAWGAKPWPWTINVAGRGYHYETREAAFTALLGFMQRWPLKNIDVGVAQVNLGWNGHFFPTYRDAFDPYLNLRAAARILRACYDARPGSWLSAAGCYHHPAGGKAAQTYIAIVRRKLGQIAQDTSGAPSVTPVELASNTLTWIEPK
>NC_017554.1|WP_014606841.1|4194792_4195323_-|integrating-conjugative-element-protein
MMKRNCFIRNALFSACLLSVVTGASAALVVVGDLGGESTAPYFDAINADKDAVTDAPAVPAAPPESLSISDMLPVSTPEMSPGPVSPQPLELSGMPPVFVVGDDSLSRQWLSQHAAALSQMHATGMVVSVKDAAALSALRALAPSTEMVPVSGGDLARRLHLAHYPVLITDKGLSQ
>NC_017554.1|WP_014606840.1|4194160_4194793_-|restriction-endonuclease
MPVYVIAELIKANPVQVALVVALALVLVCLLSPFYLRSASDRRHRRYQKRAASALVRLTELRDDAARMVWLRKVNPYVFEEMLLTALSRQGFRIKRNARYSGDGGLDGQVWIAGQRWLIQAKRYGATINAQHVAAFGLLAVQEQSRGLFIHTGRTGLSSHDAFRRCPLVILISGQRLLQLLAGDRRWLDFHDNVHHLELQSGFSAPSSRH
>NC_017554.1|WP_044042486.1|4193684_4194149_-|hypothetical-protein
MRIFFRTVPVAAINLLQSLNAGRACKSLFLLLLSLLNYMLLLFMYLLKPVFLWPLMFLSAVLTLLMMVVPVLLFASPVFTLSSACSGLLKVIHQFPEMWPVLILLSLQADMLLFLRREYNREFTRMRDRIYGREIVHAGSGCGGDLTHKQRDEP
>NC_017554.1|WP_014606839.1|4192893_4193688_-|hypothetical-protein
MSEFLSKIDANPPHWAGEIIDAWDDTLLYQYAGFLTRHHWTESGTINVFCIKGTSHPDYQGLSWSEFLHQGKHMASNLALIESNQAYYECYTSYYCEIAAKQPAMCFNSYNGIDWYVGADGNHRAALARFLFDYLGKSYLHGVQLNHYEFNEPLLNVFLALREELNLHTAEGFFMDLSVNRVHRGRESNPGWKTDIYATSLYFSTGSWSRRYEQNPAVRAVSEAREITAPAEGIALLVALRLWRERRMAERKGVFSWLSGRKDA
>NC_017554.1|WP_014606838.1|4190782_4192897_-|type-IV-conjugative-transfer-system-coupling-protein-TraD
MSDRYVMESLLRPAVEMYSATVAGSATFICLTAPWSVALAPSVSWVTAAGFGVLALKRTSQGLKILRYRRNIRRLPRYALTSDQVPVSRRHLFLGKGFQWSPRHSQRLMEARRPECEIYVQPSVIYRMARELEKKMEYSLPWLCRLTSADSAINPFRPLPPVGGSSVYHGVEPDEVNVMSDLGERVGHMLVMGTTRVGKTRLAELMITQDIRRRNASGEFEVVIVFDPKGDADLLRRMYAESHRAGRQDNFWVFHLGWPDISARYNAVGRFSRISEVASRVAGQLSNEGNAAAFREFAWRFVNIITRALVALGQRPDYSLILRYVTNIGELYETYVDNLLSEKAPELVASMQAKMALPLADRDLPRHLQGRENGKKIWASEQVLGSPEGKKLWDPVLDGLRSAVQYDRTYFDKIVASLLPLLEKLTTGKTAALLAPDYTDLSDPRPILDWHNIIKSRGVVYVGLDALSDPVVAAAVGNSMFADLVSEGGHIYKFGLGDEGDEKAGKAVINLHCDEFNELMGDEFIPLINKGGGAGFQVTAYTQTLSDIEARIGNAAKASQVIGNFNSLVMLRVKEKNTAMLLTDQLPEVGVYQKTLTSGVTDVSRPGEGTDFNSNVSDQVTLVKVPMISPSDIINLPKGQAFALLEGGRLWKIRMPLPVSDESDRFMPASLKQLADAMEKNYHSGESWWTGGDAGIPGGLHVPE
>NC_017554.1|WP_014606837.1|4190034_4190796_-|TIGR03747-family-integrating-conjugative-element-membrane-protein
MSQNDGGNTRQSAPAKHRQPGPFTLLLWDMPLSIIGILIGSLFVSLGAEYACMTFLWPDEGAAHSYQVMLAESHWLSSGYTRSLLMATPVETITRWVQAAWHWLFVDSGFSHWLASFRETSRKGSGLIPSLNGFGASLISWLGEYLQATLWVTLIFFIRVMILFLSIPLFGLVIITGIVEGLVRRDLRRYGAGYESSFVYHHAKRFVKPALYGPCMLYLAWPTAVWPNLFLLPSALLVGAVLTVVTASFKKYL
>NC_017554.1|WP_014606846.1|4199374_4200058_-|potassium-transporter-TrkH
MILLTLSMPWQFAAGLFPLFLFLLCLMAARVRADLKLSLYPSVTVDQDVTESAVCWLFATAATLTVLSPLSARLPWFFFILFLFRLTLTDALTGLLPRSVTVKCLMAGLMASLWQPLTDASVSALSSLLSHIVAATTMLVITGGLRYVSLLKGGRENPAMGDVWMSGAVCAWLGFSGFHAVGIGVMLFAMWQLQSRRASEGGPLGPWLAAGAVMVTLFQLYQPLITW
>NC_017554.1|WP_014606847.1|4200054_4200540_-|lytic-transglycosylase-domain-containing-protein
MPRTVLIVLMLMVLFCARAHAFCFDAAGAKYHIDPLLIQAIATGESSLHAGITHINRDARTGRALSTDYGLMQVNSTHIPSLIAKGFISSPQDLLTKPCLNVQIGTWILATHFQVCGISWNCLGSYNAGFRKDRHETRESYANRVYAIYKKLLLKERGIKL
>NC_017554.1|WP_014606848.1|4200544_4201135_-|type-IV-prepilin
MSFLNTTAGKHPDRGWGFMEQGAIGLLYAIVITVVLGGVWKLFSAKDSTTEVSSLQTMMSNGTALKGPNGYDFSSGASMTGFLIQKGGAPSGFTVHGTASSGTATLTNSYGGQVVMAPVANSNGYNNGFSVTTQSVTQAGCIDIATRMASAGSSSSLAINSTDFSSGQVSSEAIGQACTADSGRTGNNTLVFTHNG
>NC_017554.1|WP_014606849.1|4201144_4202260_-|type-II-secretion-system-F-family-protein
MSRNLRFRTERDLSLFEKCRYHAVRLTFTGSHRQVFYENMRFLLENRKHLETSLKMIGEVHTSFGEKWHPFLELTEDCLEGLRDNSPGRTLADVLAVWVPYEEAALISAGMKTGNIPVALMQADKLINAREQIFGQVVFASVYPLVLLVLGGGLLGVNNQSLVPMLSRMSDPASWSGALGFMKGLSDWTEQWGPAAAFSGAALVVASLWSLPRWRGRIRRLADSIMPWSLYKDLQGAVFLMNTGALLGAGVHELEAMQLLHSFAPPWLQERLDAAMDEMSEGNSLGMALRKSGYDFPSREAVNYLSLLDDGDGAAELISNYADRWLTQTLRRVARRANVTRLLSMLLIMGFFALIIMMVMQIQDSGSLNLH
>NC_017554.1|WP_014606850.1|4202249_4203812_-|Flp-pilus-assembly-complex-ATPase-component-TadA
MIPAKEIADFVFAEHHPVQGVTLLIDKNRRQDPAIQRWAMDSAKQYPGARTEFVSLSELNQRRESAAALGPGVTEDDLSTKDVSRSQDKVLSYFRLANELNASDIHLEISADRKLTVIQLRIHGELEVIDELTDEEGTTLASTVYISMCDVREQSFVAGREQSGRVSSKFARQAGLFGARYEHRPTPDGLYLVMRMIPDDSKNIPTLPQLGFLAEQIKIITQILRLPSGMVLVTGPTGAGKSATLRVLSDIWLTLTGGKKRLLTLENPPEGLIPGAIQTPVMPDDNTPEAISRAWNNANASALRLDPDAILNGEMRDFYSIMAGIYGTETGHIFMSTQHTLSAIGALSRMEHFGIKRQLLADASLITGLIGQRLVPLLCDNCKISWADKLPELDSDTRERLEKYCTVKGGCRPEQLFFRNPEGCDRCRKVIPVTKRVVSKGITGRTAVVEVVRTDAMMMQLWLNQGAAVARQYWVNKGGITRVMHLLRYLAEGRVDPLEGDLVCPLDEDELMRCEVPHVA
>NC_017554.1|WP_014606851.1|4203819_4204323_-|type-IV-pilus-biogenesis-protein-PilP
MRRNSPAVICLLLSWTLMHHAQAADSGSLPPNVTLGELESAQAQNLLLEQRVQTARLQQQLRESLAPVTSAPALSAVVPPLSSYSQAGQMPSLSSQVKESRSAAPKSAGIRLVEIYGKPGQLRARLLLPSGGIAEVVKGDPVPGTSKRVTAVTETVVRLSDDTELSF
>NC_017554.1|WP_014606852.1|4204309_4205593_-|type-4b-pilus-protein-PilO2
MKIKKKASLHLNNGVTVRDRKNRREWVAGMEWEKASSGIQWLRHGVRAADTHYRIQGSRPLTMVGNVSPGRTRSGVYSLAVAFQLCEGGNAWGIYRLSREQECWVFFAVSNGHLSVMGDVTGTRADVEAAAENFLLFNDSGELRCAARAEDGTDALSFTSRLTRTQLRRCRLHRRVAPVALALPSLLLITLLGAGWYARDTLSERARQAADEAAFRARLAMTPAKPAAPATAPHPWAHQLPVPVMLSFCWLTREPLYASVAGWRVSDAECIPKGIRLRYTATPGATVSDFARRVKELFGLDAVFNLQEGGKNGDVFIPARVTPELFEDEKLPGAEALLMRFISHLQRRNIDVKFDEVKPPVLAPGQEMKTAPQDWREFTFIINSRLQPELLFQGLDATGIRLTSVAISMNEQAKFNYTIKGSVYAQK
>NC_017554.1|WP_014606853.1|4205595_4207269_-|PilN-family-type-IVB-pilus-formation-outer-membrane-protein
MSRTPLKLTLLAIAVLLSACSVRDVATIEKDNNTQGDTAQRILQSRLDMTQPAVVWADKPWVNLKPIQSAITAPDDVKMPPCQVFFNSPEGLTLPQIASRINAICGFRVYISPEVSAALLQSAGGSVVTSQMSGRLPAPDDNGRVPLAQMGMPAQPAVMSTSEPVLFQGTRFQGDAQEALNIAASTLGLSVRRTMGRVDFFIQDTRTFQLAILNTKVDSSASINSGAGAQLGNQSGNGGTKGDVSSNQKTNYGMNSDLYNDIRKTVEQILTPKSGRYWLSDATGTLSVTDTPDVLDRVGRYIDYQNQVLHRQVQLTLQIVRFTQTKNVDRGLDWGLVAKTVSGLGASIGSTFTGAPANAGSFGLSILNSATGGAERFSGSQLMIRALEQQGTVTMALNQTDPTANLTPVAYQLSNNTGMLNSSSSTAVANVGVTSSQSVSSITTGLFITMLPFVQANGDIQLQFAYSYTTPPDIKSFISRDGNTRNDVANTATEGLARKVNLRAGQTLVLTGSDQQNASSDKQGTFSPENYLLGGGQSGAKSRSTLIIMITPVLLGQ
>NC_017554.1|WP_014606854.1|4207279_4207723_-|type-IV-pilus-biogenesis-protein-PilM
MGFALPIIALAMFFGLMASDAQRRNSDIVTQSVTVAAPSRLATDMLRTADAVNDWRHGRSVGDGPVSPAATGMMPPPDSRVQSVIQNGRLWVWVADTPGVYAALRNQSTTSALALTVSGGRLRMYDGTDMNLSLPSGVTEGSIVYLN
>NC_017554.1|WP_014606855.1|4207724_4209020_-|TcpQ-domain-containing-protein
MAVPSGQAAKRAGIIACTVMLAGCVNTASTDTASVYSRSRTPARFDDIYRNRSPEVVRYDRYTLVSTRPADAQLDPLNQVVDITMPAQLVSTVGEGFRYLLLESGYSLCSATSAAFSELLSRPLPAVQRTIGPLKLSEALQVVAGPAWRLKVDEVNREVCFELRDQYRSFSAPAASLPAIRPAVSAPVTRPYVAPVVQAKAVSVQTPASGLARNPFTGDVVTPSGLKPQSLSVPSPVLQQSQSSVTSGNLQSSSQKPASLTSGGTAATAHTLAQQNHGVITPAAVKTQTPPLTTVNATPKASSVVHQQPSSAVTPAPAADSRIVPTYSTGTPVTPPVTGQTWRAEPGTTLKEALTAWTAKAPCANGGNWVLIWPVALDYRIDAPLVFHGNFESVLVQVFDLYRHAEKPLFAEANRIQCLVSVSDTPTPGGR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017554_1	1.2\|3917821\|25\|NC_017554\|CRISPRCasFinder	3917821-3917845	25	NC_017554.1	3917533-3917557	1	0.96
NC_017554_1	1.18\|3918589\|25\|NC_017554\|CRISPRCasFinder	3918589-3918613	25	NC_017554.1	3916573-3916597	2	0.92

1. spacer 1.2|3917821|25|NC_017554|CRISPRCasFinder matches to position: 3917533-3917557, mismatch: 1, identity: 0.96

cgtcaggctactgtgataactggcg	CRISPR spacer
cgtcaggctactgtgatagctggcg	Protospacer
******************.******

2. spacer 1.18|3918589|25|NC_017554|CRISPRCasFinder matches to position: 3916573-3916597, mismatch: 2, identity: 0.92

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gatcagggagctgtcggcgcccgcc	Protospacer
**************** *.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017554_1	1.5\|3917965\|25\|NC_017554\|CRISPRCasFinder	3917965-3917989	25	NC_015465	Synechococcus phage S-CBS3, complete genome	16068-16092	3	0.88
NC_017554_1	1.10\|3918205\|25\|NC_017554\|CRISPRCasFinder	3918205-3918229	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	3	0.88
NC_017554_1	1.18\|3918589\|25\|NC_017554\|CRISPRCasFinder	3918589-3918613	25	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	16052-16076	3	0.88
NC_017554_1	1.18\|3918589\|25\|NC_017554\|CRISPRCasFinder	3918589-3918613	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	303458-303482	3	0.88
NC_017554_1	1.18\|3918589\|25\|NC_017554\|CRISPRCasFinder	3918589-3918613	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	304756-304780	3	0.88
NC_017554_1	1.18\|3918589\|25\|NC_017554\|CRISPRCasFinder	3918589-3918613	25	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	305416-305440	3	0.88
NC_017554_1	1.20\|3918685\|25\|NC_017554\|CRISPRCasFinder	3918685-3918709	25	NZ_CP022991	Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence	466448-466472	3	0.88
NC_017554_1	1.4\|3917917\|25\|NC_017554\|CRISPRCasFinder	3917917-3917941	25	NZ_CP028972	Aminobacter sp. MSH1 plasmid pUSP4, complete sequence	38380-38404	4	0.84
NC_017554_1	1.6\|3918013\|25\|NC_017554\|CRISPRCasFinder	3918013-3918037	25	NC_047783	Klebsiella phage vB_KpnP_KpV48, complete genome	3937-3961	4	0.84
NC_017554_1	1.11\|3918253\|25\|NC_017554\|CRISPRCasFinder	3918253-3918277	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NC_017554_1	1.13\|3918349\|25\|NC_017554\|CRISPRCasFinder	3918349-3918373	25	MN484601	Gordonia phage Sixama, complete genome	4322-4346	4	0.84
NC_017554_1	1.16\|3918493\|25\|NC_017554\|CRISPRCasFinder	3918493-3918517	25	NZ_CP048425	Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence	220598-220622	4	0.84
NC_017554_1	1.16\|3918493\|25\|NC_017554\|CRISPRCasFinder	3918493-3918517	25	MK290737	Pectobacterium phage Arno162, complete genome	39073-39097	4	0.84
NC_017554_1	1.16\|3918493\|25\|NC_017554\|CRISPRCasFinder	3918493-3918517	25	MN270892	Pectobacterium phage Wc4-1, complete genome	70859-70883	4	0.84
NC_017554_1	1.16\|3918493\|25\|NC_017554\|CRISPRCasFinder	3918493-3918517	25	MN270891	Pectobacterium phage Wc4, complete genome	70859-70883	4	0.84
NC_017554_1	1.17\|3918541\|25\|NC_017554\|CRISPRCasFinder	3918541-3918565	25	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	410392-410416	4	0.84
NC_017554_1	1.7\|3918061\|25\|NC_017554\|CRISPRCasFinder	3918061-3918085	25	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	540938-540962	5	0.8
NC_017554_1	1.7\|3918061\|25\|NC_017554\|CRISPRCasFinder	3918061-3918085	25	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	380738-380762	5	0.8
NC_017554_1	1.19\|3918637\|25\|NC_017554\|CRISPRCasFinder	3918637-3918661	25	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	163595-163619	5	0.8

1. spacer 1.5|3917965|25|NC_017554|CRISPRCasFinder matches to NC_015465 (Synechococcus phage S-CBS3, complete genome) position: , mismatch: 3, identity: 0.88

cgttagcacactgttgtagctggct	CRISPR spacer
cgttagcacgctgttgtagttggca	Protospacer
*********.*********.****

2. spacer 1.10|3918205|25|NC_017554|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

cgtaagatcgctgcccttctgcgcg	CRISPR spacer
ccgaagatcgctgcccttcagcgcg	Protospacer
*  **************** *****

3. spacer 1.18|3918589|25|NC_017554|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gctcagggagccgtcgtcaccggcc	Protospacer
* *********.********* ***

4. spacer 1.18|3918589|25|NC_017554|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

5. spacer 1.18|3918589|25|NC_017554|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

6. spacer 1.18|3918589|25|NC_017554|CRISPRCasFinder matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 3, identity: 0.88

gatcagggagctgtcgtcacccgcc	CRISPR spacer
gttcagggaactctcgtcacccgcc	Protospacer
* *******.** ************

7. spacer 1.20|3918685|25|NC_017554|CRISPRCasFinder matches to NZ_CP022991 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence) position: , mismatch: 3, identity: 0.88

catctggctgctctcttcacctgcg	CRISPR spacer
ctgatggctgctctcttcacctgcg	Protospacer
*   *********************

8. spacer 1.4|3917917|25|NC_017554|CRISPRCasFinder matches to NZ_CP028972 (Aminobacter sp. MSH1 plasmid pUSP4, complete sequence) position: , mismatch: 4, identity: 0.84

agtgaggtcactgccttctctcgcc	CRISPR spacer
ggtcgtgtcactgccttctctcgcc	Protospacer
.** . *******************

9. spacer 1.6|3918013|25|NC_017554|CRISPRCasFinder matches to NC_047783 (Klebsiella phage vB_KpnP_KpV48, complete genome) position: , mismatch: 4, identity: 0.84

gatcagtgaactatttgccccggct	CRISPR spacer
tttctttgaactatttgccccggct	Protospacer
  **  *******************

10. spacer 1.11|3918253|25|NC_017554|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tgtcagcgagctgtcttcgcccgcc	CRISPR spacer
cctcggcgagctgtcttcacccgcc	Protospacer
. **.*************.******

11. spacer 1.13|3918349|25|NC_017554|CRISPRCasFinder matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 4, identity: 0.84

cgtaaggtcgctgcccttctgcgcg	CRISPR spacer
attatggtcgccgcccttctgcgcg	Protospacer
  ** ******.*************

12. spacer 1.16|3918493|25|NC_017554|CRISPRCasFinder matches to NZ_CP048425 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ccgaagatcgctgcccttcagcgcg	Protospacer
   **************** *****

13. spacer 1.16|3918493|25|NC_017554|CRISPRCasFinder matches to MK290737 (Pectobacterium phage Arno162, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
*******.*************   *

14. spacer 1.16|3918493|25|NC_017554|CRISPRCasFinder matches to MN270892 (Pectobacterium phage Wc4-1, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
*******.*************   *

15. spacer 1.16|3918493|25|NC_017554|CRISPRCasFinder matches to MN270891 (Pectobacterium phage Wc4, complete genome) position: , mismatch: 4, identity: 0.84

ggtaagatcgctgcccttctgcgcg	CRISPR spacer
ggtaagaccgctgcccttctgatgg	Protospacer
*******.*************   *

16. spacer 1.17|3918541|25|NC_017554|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tgtcagcgagctgtcttcgcccgcc	CRISPR spacer
cctcggcgagctgtcttcacccgcc	Protospacer
. **.*************.******

17. spacer 1.7|3918061|25|NC_017554|CRISPRCasFinder matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 5, identity: 0.8

gatgagatcgctttcgttctgcgcg	CRISPR spacer
acatagatcgctttcggtctgcgcg	Protospacer
.   ************ ********

18. spacer 1.7|3918061|25|NC_017554|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.8

gatgagatcgctttcgttctgcgcg	CRISPR spacer
cgcgacatcgctttcgttctgcgct	Protospacer
 ..** ******************

19. spacer 1.19|3918637|25|NC_017554|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 5, identity: 0.8

ggtgagatcgctgcctttcatgccg	CRISPR spacer
gttgagatcgctgcctttcataatt	Protospacer
* *******************. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

612641 : 723688

119

Salmonella_phage(44.29%)

capsid,terminase,tail,lysis,tRNA,portal,head,holin,plate,integrase

attL 681841:681862|attR 716983:717004

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013027332.1\|612641_613037_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_014604934.1\|613039_613345_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_013027330.1\|613380_613755_-	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_013027329.1\|613942_614290_-	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_014594688.1\|614286_614961_-	DedA family protein	NA	NA	NA	NA
WP_014594687.1\|615273_616050_-	transcriptional regulator ExuR	NA	NA	NA	NA
WP_013027326.1\|616137_617442_-	MFS transporter	NA	NA	NA	NA
WP_014604935.1\|617841_619257_+	glucuronate isomerase	NA	NA	NA	NA
WP_014604936.1\|619259_620708_+	tagaturonate reductase	NA	NA	NA	NA
WP_013027323.1\|620710_622201_+	altronate dehydratase	NA	NA	NA	NA
WP_013027322.1\|622255_623227_-	TerC family protein	A0A291LBC5	Escherichia_phage	4.4e-35	36.4
WP_014604937.1\|623487_624468_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_014604938.1\|624603_626292_+	chloride channel protein	NA	NA	NA	NA
WP_014604939.1\|626288_626792_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_014594681.1\|626874_627993_+	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
WP_044042268.1\|627993_630015_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_014604941.1\|630177_630885_-	polyphenol oxidase family protein	NA	NA	NA	NA
WP_013027315.1\|630993_631803_+	5'-nucleotidase, lipoprotein e(P4) family	NA	NA	NA	NA
WP_014604942.1\|632375_633008_+	carbonic anhydrase	NA	NA	NA	NA
WP_013027313.1\|633004_634480_+	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_014604943.1\|634741_636166_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.9e-19	31.9
WP_014594675.1\|636184_637282_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_022622436.1\|637380_637734_-	anti-adapter protein IraP	NA	NA	NA	NA
WP_014604944.1\|638098_639676_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.9e-22	39.0
WP_014604945.1\|639692_641474_-	GGDEF and EAL domain-containing protein	NA	NA	NA	NA
WP_014594672.1\|641814_643278_+	methyl-accepting chemotaxis citrate transducer Tcp	NA	NA	NA	NA
WP_014604946.1\|643700_643940_+	hypothetical protein	NA	NA	NA	NA
WP_014604947.1\|644185_646360_+	EAL domain-containing protein	NA	NA	NA	NA
WP_013027304.1\|646976_647219_-	hypothetical protein	NA	NA	NA	NA
WP_013027303.1\|647955_648264_+	hypothetical protein	NA	NA	NA	NA
WP_014604948.1\|648533_648773_+	hypothetical protein	NA	NA	NA	NA
WP_014604949.1\|648914_649184_+	hypothetical protein	NA	NA	NA	NA
WP_014604950.1\|649326_649602_+	regulatory protein AriR	NA	NA	NA	NA
WP_014604951.1\|649687_649885_-	hypothetical protein	NA	NA	NA	NA
WP_014604952.1\|650014_650272_-	hypothetical protein	NA	NA	NA	NA
WP_014604953.1\|650586_652515_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_013027297.1\|653555_655100_+	MCP four helix bundle domain-containing protein	NA	NA	NA	NA
WP_013027296.1\|655555_657034_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.4e-186	70.3
WP_014604955.1\|657204_658752_+	PRD domain-containing protein	NA	NA	NA	NA
WP_014594664.1\|658744_659218_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_014604956.1\|659238_660648_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_014604957.1\|660651_661509_+	ketose-bisphosphate aldolase	NA	NA	NA	NA
WP_014594661.1\|661715_662300_-	phage repressor protein	A0A218M4J1	Erwinia_phage	2.5e-33	42.2
WP_014604958.1\|662723_663092_+	hypothetical protein	F1BUS4	Erwinia_phage	9.4e-39	58.3
WP_014604959.1\|663158_663377_+	DUF2732 family protein	F1BUS3	Erwinia_phage	6.0e-09	54.1
WP_014594660.1\|663376_663604_+	TraR/DksA C4-type zinc finger protein	F1BUS2	Erwinia_phage	1.4e-13	50.0
WP_014604960.1\|663600_665664_+	replication endonuclease	F1BUS0	Erwinia_phage	9.0e-264	70.8
WP_013027286.1\|665871_666096_+	hypothetical protein	F1BUR9	Erwinia_phage	2.6e-15	64.6
WP_014604961.1\|666789_666993_+\|tail	tail protein X	F1BUQ5	Erwinia_phage	2.9e-26	80.6
WP_014604962.1\|666998_667223_+	hypothetical protein	F1BUQ4	Erwinia_phage	9.8e-31	82.4
WP_014604963.1\|667206_667716_+	lysozyme	E5G6N1	Salmonella_phage	4.8e-57	66.3
WP_014604964.1\|667712_668147_+	hypothetical protein	F1BUQ1	Erwinia_phage	1.6e-37	58.3
WP_014594656.1\|668233_668704_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.3e-48	63.2
WP_013027279.1\|668796_669381_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	9.9e-83	79.4
WP_013027278.1\|669377_669728_+	GPW/gp25 family protein	F1BUP4	Erwinia_phage	2.1e-48	81.9
WP_014604965.1\|669731_670640_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	9.5e-133	82.1
WP_014604966.1\|670632_671166_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	4.2e-80	79.1
WP_014604968.1\|672782_673316_+\|tail	tail fiber assembly protein	A0A0A7NRZ7	Enterobacteria_phage	8.0e-39	47.8
WP_014594650.1\|673794_674964_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	3.3e-202	89.7
WP_013027271.1\|674976_675489_+\|tail	phage major tail tube protein	F1BUU2	Erwinia_phage	3.3e-82	85.3
WP_013027270.1\|675543_675840_+\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	6.0e-28	72.2
WP_013027268.1\|675872_675995_+\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	7.4e-09	61.5
WP_014604969.1\|675987_678054_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	9.8e-08	46.3
WP_014604970.1\|678060_678564_+\|tail	phage tail protein	F1BUT6	Erwinia_phage	4.4e-55	69.5
WP_014604971.1\|678565_679723_+	cytochrome c1	A0A0M5M5V5	Salmonella_phage	2.2e-81	43.2
WP_014604972.1\|679796_680018_+	ogr/Delta-like zinc finger family protein	F1BUT0	Erwinia_phage	8.2e-22	68.1
WP_014604973.1\|680395_680926_-	hypothetical protein	NA	NA	NA	NA
WP_014604974.1\|681063_681255_+	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
681841:681862	attL	NA	NA	NA	NA
WP_014604975.1\|682170_683022_+	DNA processing protein DprA	NA	NA	NA	NA
WP_014604976.1\|683046_684339_+	hypothetical protein	NA	NA	NA	NA
WP_014604977.1\|684390_685404_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	3.8e-114	60.4
WP_014604978.1\|685413_686019_-	phage repressor protein CI	F1BUN8	Cronobacter_phage	1.0e-29	41.2
WP_014604979.1\|686108_686345_+	hypothetical protein	NA	NA	NA	NA
WP_014604980.1\|686379_686889_+	phage regulatory CII family protein	F1BUS6	Erwinia_phage	1.9e-61	72.8
WP_044042276.1\|686893_687079_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.0e-09	48.2
WP_014604982.1\|687080_687464_+	hypothetical protein	F1BUS4	Erwinia_phage	1.0e-40	68.1
WP_014604983.1\|687533_687761_+	DUF2732 domain-containing protein	NA	NA	NA	NA
WP_014604984.1\|687760_687988_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.1e-18	61.3
WP_014604985.1\|687984_688821_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.0e-88	59.9
WP_014604986.1\|688817_689822_+	phosphoadenosine phosphosulfate reductase family protein	B7SYG0	Stenotrophomonas_phage	3.8e-66	42.9
WP_151243577.1\|689821_692107_+	replication endonuclease	F1BUS0	Erwinia_phage	0.0e+00	77.7
WP_014604988.1\|692190_692379_+	hypothetical protein	E5G6M0	Salmonella_phage	1.9e-19	78.3
WP_014604989.1\|692394_692628_+	DinI-like family protein	E5G6M1	Salmonella_phage	1.2e-23	71.4
WP_014604990.1\|692784_693504_+	hypothetical protein	Q37850	Escherichia_phage	9.4e-59	49.4
WP_014604991.1\|693550_693817_+	hypothetical protein	J9Q7T5	Salmonella_phage	9.5e-17	48.3
WP_014604992.1\|694125_695457_+	AAA family ATPase	A0A2I7RNF1	Vibrio_phage	3.7e-16	22.9
WP_014604993.1\|695446_696052_+	hypothetical protein	NA	NA	NA	NA
WP_014604994.1\|696121_697156_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	1.8e-159	78.6
WP_014604995.1\|697155_698922_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	2.4e-305	84.9
WP_014604996.1\|699066_699930_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.0e-84	61.3
WP_014604997.1\|699974_701180_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.3e-132	67.4
WP_014604998.1\|701183_701828_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.0e-84	74.5
WP_014604999.1\|701925_702390_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	4.6e-59	71.4
WP_014605000.1\|702389_702593_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.2e-27	83.6
WP_014605001.1\|702596_702809_+	hypothetical protein	E5G6N0	Salmonella_phage	9.9e-17	60.3
WP_014605002.1\|702789_703305_+	lysozyme	E5G6N1	Salmonella_phage	1.1e-74	79.9
WP_014605003.1\|703301_703733_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.0e-32	54.2
WP_014605005.1\|703828_704260_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	3.3e-51	68.5
WP_014605006.1\|704252_704699_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.3e-39	57.5
WP_049792165.1\|704746_705628_-	hypothetical protein	NA	NA	NA	NA
WP_014605008.1\|705771_706350_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.6e-67	68.1
WP_014605009.1\|706349_706703_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	4.2e-36	59.0
WP_014605010.1\|706689_707607_+\|plate	baseplate J/gp47 family protein	A0A1S6KZY6	Salmonella_phage	2.2e-100	63.4
WP_014605011.1\|707603_708206_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.6e-83	73.6
WP_014605012.1\|708207_709395_+\|tail	phage tail protein	F1BUP1	Erwinia_phage	1.7e-110	63.0
WP_014605013.1\|709399_709828_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.5e-19	40.0
WP_014605014.1\|709945_711118_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.2e-190	84.4
WP_014605015.1\|711130_711646_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.3e-80	84.8
WP_014605016.1\|711704_712007_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	2.5e-29	72.4
WP_013027006.1\|712021_712144_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_014605017.1\|712136_715049_+\|tail	phage tail tape measure protein	A0A1S6L010	Salmonella_phage	1.9e-195	46.0
WP_014605018.1\|715045_715528_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.4e-55	69.8
WP_014605019.1\|715527_716628_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.3e-149	74.1
WP_014605020.1\|716688_716907_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	2.3e-21	68.7
WP_014605021.1\|717449_717965_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
716983:717004	attR	NA	NA	NA	NA
WP_013027259.1\|718035_719880_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
WP_014605022.1\|720318_722064_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.8e-72	37.5
WP_001144069.1\|722180_722396_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_014605023.1\|722674_723688_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.9e-106	58.0

DBSCAN-SWA_2

1685489 : 1695789

Enterobacteria_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014594076.1\|1685489_1686386_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	6.7e-46	40.1
WP_014605453.1\|1686431_1687445_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	3.5e-75	43.7
WP_014605454.1\|1687955_1689032_+	UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase	NA	NA	NA	NA
WP_014605455.1\|1689175_1690261_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.3e-99	53.6
WP_014605456.1\|1690260_1691157_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.3e-25	33.4
WP_014605457.1\|1691207_1692086_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.0e-107	63.8
WP_014605458.1\|1692088_1692628_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.1e-51	56.7
WP_014605459.1\|1692730_1693945_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_014605460.1\|1693932_1695789_+	asparagine synthase (glutamine-hydrolyzing)	A0A1V0SGM7	Hokovirus	1.1e-31	27.0

DBSCAN-SWA_3

1974144 : 2017610

Salmonella_phage(34.15%)

capsid,terminase,tail,lysis,holin,plate,integrase

attL 1974024:1974049|attR 2017797:2017822

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1974024:1974049	attL	NA	NA	NA	NA
WP_014605596.1\|1974144_1975323_-\|integrase	tyrosine-type recombinase/integrase	I6PDJ1	Cronobacter_phage	5.5e-149	66.2
WP_014605598.1\|1975483_1977562_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	3.1e-203	50.8
WP_014605599.1\|1977558_1978431_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	5.1e-83	50.9
WP_044042326.1\|1978908_1979190_-	hypothetical protein	NA	NA	NA	NA
WP_193372488.1\|1979226_1979382_-	hypothetical protein	NA	NA	NA	NA
WP_044042327.1\|1979375_1979618_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014605601.1\|1979735_1980275_-	hypothetical protein	NA	NA	NA	NA
WP_014605602.1\|1980271_1980514_-	DNA polymerase III subunit theta	A0A2H4J4A9	uncultured_Caudovirales_phage	2.1e-31	82.1
WP_014605603.1\|1980559_1980799_+	hypothetical protein	NA	NA	NA	NA
WP_014605604.1\|1980963_1981413_-	hypothetical protein	NA	NA	NA	NA
WP_014605605.1\|1981412_1981946_-	hypothetical protein	A0A2D1GNL9	Pseudomonas_phage	5.7e-53	63.2
WP_049792166.1\|1982030_1982720_-	hypothetical protein	NA	NA	NA	NA
WP_014605607.1\|1982728_1983406_-	AAA family ATPase	G9L667	Escherichia_phage	8.3e-49	45.5
WP_014605608.1\|1983406_1984075_-	exodeoxyribonuclease X	A0A1W5PTR6	Pseudoalteromonas_phage	2.2e-22	34.3
WP_014605609.1\|1984043_1984253_-	hypothetical protein	NA	NA	NA	NA
WP_014605610.1\|1984374_1984779_-	hypothetical protein	NA	NA	NA	NA
WP_158307927.1\|1985011_1985167_-	hypothetical protein	NA	NA	NA	NA
WP_044042329.1\|1985727_1986411_-	helix-turn-helix domain-containing protein	A0A2H4FNG6	Salmonella_phage	3.0e-14	45.4
WP_044042330.1\|1986449_1986686_+	helix-turn-helix domain-containing protein	A0A2D1GLN0	Escherichia_phage	2.4e-19	68.1
WP_014605612.1\|1986698_1987001_+	hypothetical protein	I6PCV6	Cronobacter_phage	1.6e-12	46.7
WP_014605613.1\|1986993_1987179_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_158307928.1\|1987234_1987387_+	hypothetical protein	NA	NA	NA	NA
WP_014605614.1\|1987379_1988444_+	replication protein	A0A2H4J2W5	uncultured_Caudovirales_phage	2.5e-55	87.6
WP_014605615.1\|1988436_1989825_+	replicative DNA helicase	K7P852	Enterobacteria_phage	2.4e-127	55.0
WP_044042536.1\|1989824_1990181_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	1.0e-42	67.8
WP_080561259.1\|1990264_1991071_+	antitermination protein	M9NZB0	Enterobacteria_phage	4.6e-62	48.8
WP_014605618.1\|1991425_1991779_+\|holin	class II holin family protein	NA	NA	NA	NA
WP_193372493.1\|1991784_1992267_+	glycoside hydrolase family protein	A0A1W6JP42	Morganella_phage	2.2e-43	56.5
WP_014605620.1\|1992263_1992764_+\|lysis	lysis protein	A0A2R2Z341	Escherichia_phage	1.6e-28	46.4
WP_044042331.1\|1992768_1993026_+	hypothetical protein	NA	NA	NA	NA
WP_044042332.1\|1993079_1993259_+	hypothetical protein	NA	NA	NA	NA
WP_014605621.1\|1993338_1993839_+	hypothetical protein	NA	NA	NA	NA
WP_014605622.1\|1993871_1994057_+	hypothetical protein	NA	NA	NA	NA
WP_014605623.1\|1994058_1994676_+	hypothetical protein	F1C5D5	Cronobacter_phage	4.7e-91	76.4
WP_014605624.1\|1994706_1995180_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	2.6e-49	75.9
WP_014605625.1\|1995394_1995619_-	YegP family protein	NA	NA	NA	NA
WP_014605626.1\|1995720_1997331_+\|terminase	phage terminase large subunit TerL	A0A0M5M1R6	Salmonella_phage	2.5e-293	88.9
WP_014605627.1\|1997341_1998814_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	2.7e-225	78.0
WP_014605628.1\|1998773_1999439_+\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	1.2e-73	69.7
WP_014605629.1\|1999474_2000701_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	6.4e-140	65.0
WP_014605630.1\|2000712_2001210_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	6.3e-62	74.5
WP_014605631.1\|2001219_2002161_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	5.9e-154	83.1
WP_014605632.1\|2002204_2002540_+	hypothetical protein	NA	NA	NA	NA
WP_014605633.1\|2002543_2002951_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	1.2e-55	78.5
WP_014605634.1\|2002947_2003577_+	hypothetical protein	A0A2H4J488	uncultured_Caudovirales_phage	3.7e-27	41.5
WP_014605635.1\|2003563_2003953_+	hypothetical protein	A0A0M3ULK0	Salmonella_phage	7.1e-53	77.5
WP_014605636.1\|2003942_2004491_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	6.3e-55	56.1
WP_014605637.1\|2004494_2005640_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	4.5e-148	68.8
WP_014605638.1\|2005652_2006093_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	5.2e-68	85.6
WP_014605639.1\|2006095_2006572_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	6.5e-40	62.7
WP_014605641.1\|2006749_2008726_+	transglycosylase SLT domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.7e-280	71.6
WP_014605642.1\|2008725_2009343_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	1.1e-55	62.9
WP_014605643.1\|2009339_2009642_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	1.8e-24	54.0
WP_014605644.1\|2009645_2010674_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	4.7e-96	51.1
WP_044042333.1\|2010673_2011372_+	hypothetical protein	NA	NA	NA	NA
WP_014605645.1\|2011655_2012699_+	hypothetical protein	NA	NA	NA	NA
WP_014605646.1\|2012695_2013208_+	hypothetical protein	NA	NA	NA	NA
WP_014605647.1\|2013287_2013944_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.1e-69	55.1
WP_014605648.1\|2013940_2014294_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.9e-53	86.3
WP_014605649.1\|2014293_2015493_+\|plate	baseplate J/gp47 family protein	A0A2H4J5T1	uncultured_Caudovirales_phage	4.1e-160	73.6
WP_014605650.1\|2015489_2016170_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.5e-98	77.5
WP_014605651.1\|2016169_2017174_+	hypothetical protein	A0A0M3ULD8	Salmonella_phage	4.5e-43	52.3
WP_151243580.1\|2017184_2017610_+\|tail	tail fiber assembly protein	M1SNQ2	Escherichia_phage	8.1e-34	50.0
2017797:2017822	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2237001 : 2243948

Cronobacter_phage(42.86%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044042337.1\|2237001_2237349_+	RusA family crossover junction endodeoxyribonuclease	A0A2H4J472	uncultured_Caudovirales_phage	2.7e-51	88.5
WP_014605746.1\|2237472_2237691_+	hypothetical protein	NA	NA	NA	NA
WP_049792169.1\|2237653_2237833_+	hypothetical protein	K7PM01	Enterobacterial_phage	5.8e-10	60.9
WP_193372489.1\|2237829_2238000_+	hypothetical protein	NA	NA	NA	NA
WP_014605748.1\|2238198_2238714_+	Rha family transcriptional regulator	Q38450	Enterobacteria_phage	4.1e-80	85.9
WP_044042341.1\|2238800_2239226_+	hypothetical protein	NA	NA	NA	NA
WP_151243570.1\|2239294_2239630_-	hypothetical protein	NA	NA	NA	NA
WP_193372494.1\|2239652_2240654_+\|terminase	terminase small subunit	F1C5D8	Cronobacter_phage	4.6e-88	67.1
WP_044042345.1\|2240650_2240854_-	hypothetical protein	NA	NA	NA	NA
WP_014605750.1\|2240908_2242105_+	hypothetical protein	F1C5D9	Cronobacter_phage	9.4e-104	51.6
WP_014605751.1\|2242108_2242549_+	hypothetical protein	F1C5E0	Cronobacter_phage	1.1e-41	63.7
WP_044042346.1\|2243051_2243948_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	6.5e-09	24.2

DBSCAN-SWA_5

2605482 : 2619217

Pandoravirus(11.11%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013025587.1\|2605482_2606529_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B5IW14	Pandoravirus	3.0e-82	47.9
WP_014605962.1\|2606530_2607967_-	YdiU family protein	NA	NA	NA	NA
WP_014605963.1\|2608057_2608792_-	EAL domain-containing protein	NA	NA	NA	NA
WP_014605964.1\|2609084_2609543_-	C40 family peptidase	A0A217EQL1	Bacillus_phage	5.5e-12	38.4
WP_014605965.1\|2609609_2610359_-	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	NA	NA	NA
WP_013025582.1\|2610359_2610905_-	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	1.8e-14	40.7
WP_013025581.1\|2610938_2611928_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-14	27.2
WP_006118960.1\|2612027_2612330_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	5.6e-13	40.0
WP_014593594.1\|2612334_2614722_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.6e-09	30.9
WP_013025578.1\|2614736_2615720_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-33	42.1
WP_106120997.1\|2615868_2615913_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_006118956.1\|2616034_2616391_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_004157374.1\|2616435_2616633_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_026020952.1\|2616733_2617285_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.9e-15	31.8
WP_014593593.1\|2617288_2619217_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.1e-125	36.8

DBSCAN-SWA_6

3351904 : 3401838

Edwardsiella_phage(23.64%)

terminase,protease,head,plate,integrase

attL 3351682:3351738|attR 3398764:3398820

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3351682:3351738	attL	NA	NA	NA	NA
WP_014606350.1\|3351904_3352228_-	phage repressor protein	A0A2H4J4R6	uncultured_Caudovirales_phage	5.9e-21	47.6
WP_014606351.1\|3352229_3352469_-	hypothetical protein	NA	NA	NA	NA
WP_014606352.1\|3352742_3353780_+	acyltransferase family protein	S5FNR8	Shigella_phage	4.2e-68	40.4
WP_014606353.1\|3353802_3356313_-	hypothetical protein	A0A2H5BPC4	Salmonella_phage	3.0e-120	38.9
WP_014606354.1\|3356368_3357712_-	hypothetical protein	Q8HAM8	Burkholderia_phage	3.1e-39	42.6
WP_014606355.1\|3357713_3358301_-	DUF2612 domain-containing protein	H9C0Y0	Aeromonas_phage	3.8e-26	39.0
WP_014606356.1\|3358297_3359530_-\|plate	baseplate J/gp47 family protein	A0A077KGW9	Edwardsiella_phage	1.2e-109	52.3
WP_014606357.1\|3359538_3359898_-	hypothetical protein	A0A077KCA1	Edwardsiella_phage	1.7e-21	48.6
WP_158307932.1\|3359934_3360573_-	oxidoreductase	A0A077KAY0	Edwardsiella_phage	3.9e-32	45.8
WP_014606359.1\|3360635_3361490_-	hypothetical protein	A0A077KC17	Edwardsiella_phage	9.2e-53	41.8
WP_014606360.1\|3361486_3361792_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	6.2e-20	46.5
WP_014606361.1\|3361791_3362595_-	hypothetical protein	A0A077KGW3	Edwardsiella_phage	1.4e-26	45.6
WP_014606362.1\|3362596_3364375_-	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	1.2e-38	27.3
WP_014606363.1\|3364374_3364572_-	hypothetical protein	H9C0W8	Aeromonas_phage	6.2e-05	48.9
WP_014606364.1\|3364586_3364991_-	hypothetical protein	H9C0W7	Aeromonas_phage	3.0e-14	39.8
WP_044042567.1\|3364999_3365341_-	hypothetical protein	NA	NA	NA	NA
WP_014606366.1\|3365439_3366918_-	DUF3383 domain-containing protein	A0A068C8K3	Acinetobacter_phage	3.1e-72	35.0
WP_044042568.1\|3366918_3367410_-	hypothetical protein	A0A077KC88	Edwardsiella_phage	2.0e-12	33.3
WP_014606368.1\|3367466_3367835_-	hypothetical protein	A0A077KAW7	Edwardsiella_phage	2.7e-25	46.7
WP_014606369.1\|3367834_3368281_-	hypothetical protein	A0A077KC03	Edwardsiella_phage	4.6e-40	57.8
WP_014606370.1\|3368273_3368678_-	DUF4054 domain-containing protein	Q2NPC6	Xanthomonas_phage	2.8e-12	37.1
WP_044042569.1\|3368681_3368885_-	hypothetical protein	NA	NA	NA	NA
WP_014606372.1\|3369150_3370176_-	hypothetical protein	A0A077KC85	Edwardsiella_phage	2.3e-58	39.3
WP_014606373.1\|3370175_3370664_-	hypothetical protein	A0A077KAW3	Edwardsiella_phage	4.4e-36	50.3
WP_080561254.1\|3370666_3371881_-	DUF2213 domain-containing protein	A0A219YBB9	Aeromonas_phage	1.1e-59	36.6
WP_014606375.1\|3371944_3372655_-\|head	putative phage head morphogenesis protein	A0A077KGU5	Edwardsiella_phage	2.4e-51	48.8
WP_014606376.1\|3372656_3374132_-	DUF1073 domain-containing protein	A0A077KC81	Edwardsiella_phage	1.2e-73	35.1
WP_049792157.1\|3374128_3375559_-\|terminase	phage terminase large subunit	D0UIJ7	Aggregatibacter_phage	4.2e-127	50.4
WP_014606378.1\|3375602_3376112_-	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	8.1e-49	68.3
WP_049792171.1\|3376143_3376773_-	hypothetical protein	F1C5D5	Cronobacter_phage	2.1e-91	77.5
WP_044042410.1\|3377259_3377463_-	hypothetical protein	NA	NA	NA	NA
WP_044042412.1\|3377579_3377882_-	hypothetical protein	NA	NA	NA	NA
WP_044042414.1\|3377884_3378094_-	hypothetical protein	NA	NA	NA	NA
WP_151243571.1\|3378238_3378595_-	hypothetical protein	NA	NA	NA	NA
WP_014606381.1\|3378633_3379173_-	lysozyme	H9C184	Pectobacterium_phage	4.7e-79	77.9
WP_044042415.1\|3379183_3379432_-	hypothetical protein	G0ZNC7	Cronobacter_phage	2.3e-25	83.1
WP_014606383.1\|3380077_3380692_-	hypothetical protein	A0A1V0E5R2	Salmonella_phage	1.5e-36	42.7
WP_044042416.1\|3380802_3381210_-	hypothetical protein	NA	NA	NA	NA
WP_014606384.1\|3381549_3382128_-	recombination protein NinG	A0A0P0ZG59	Escherichia_phage	6.2e-37	42.9
WP_014606385.1\|3382120_3382426_-	hypothetical protein	A0A220NQY7	Salmonella_phage	3.0e-06	33.3
WP_158307929.1\|3382418_3382592_-	hypothetical protein	A0A2H4J175	uncultured_Caudovirales_phage	4.1e-13	64.2
WP_014606386.1\|3383302_3383752_-	DUF1367 family protein	A0A2R2Z328	Escherichia_phage	2.8e-53	65.1
WP_044042418.1\|3383896_3384097_-	hypothetical protein	A0A1B1W2E1	Salmonella_phage	3.0e-15	71.7
WP_044042420.1\|3384093_3384306_-	hypothetical protein	NA	NA	NA	NA
WP_044042421.1\|3384293_3384521_-	hypothetical protein	NA	NA	NA	NA
WP_158307930.1\|3384722_3384875_-	hypothetical protein	A0A2H4J9R7	uncultured_Caudovirales_phage	1.6e-16	80.0
WP_014606387.1\|3384877_3385570_-	DNA replication protein	A0A2H4J1B6	uncultured_Caudovirales_phage	5.2e-107	80.3
WP_080561256.1\|3385566_3386424_-	replication protein	H6WRX7	Salmonella_phage	5.5e-82	60.7
WP_014606389.1\|3386398_3387049_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_014606390.1\|3387083_3387380_-	transcriptional activator-regulatory protein C1	A0A2H4J609	uncultured_Caudovirales_phage	1.5e-31	75.5
WP_014606391.1\|3387489_3387675_-	helix-turn-helix domain-containing protein	K7PHK4	Enterobacteria_phage	5.1e-25	93.4
WP_014606392.1\|3387758_3388409_+	helix-turn-helix domain-containing protein	K7PM82	Enterobacteria_phage	4.2e-34	44.7
WP_044042426.1\|3388405_3388798_+	hypothetical protein	NA	NA	NA	NA
WP_014606394.1\|3389605_3389980_+	hypothetical protein	Q7Y3U8	Yersinia_phage	2.0e-52	79.0
WP_014606395.1\|3390100_3390352_+	hypothetical protein	A0A1B0VMC0	Pseudomonas_phage	1.6e-10	51.9
WP_044042428.1\|3390355_3390580_+	DUF551 domain-containing protein	NA	NA	NA	NA
WP_014606396.1\|3390714_3391686_+	hypothetical protein	M9P0E1	Enterobacteria_phage	1.7e-42	59.8
WP_151243572.1\|3391709_3391847_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	NA	NA	NA	NA
WP_014606397.1\|3391959_3392271_+	hypothetical protein	NA	NA	NA	NA
WP_193372487.1\|3392267_3393167_+	recombinase RecT	K7PKG9	Enterobacteria_phage	3.0e-115	71.3
WP_014606399.1\|3393163_3393646_+	siphovirus Gp157 family protein	G8C7S9	Escherichia_phage	5.3e-66	77.5
WP_014606400.1\|3393658_3394057_+	hypothetical protein	A0A2R2Z303	Escherichia_phage	5.3e-11	36.6
WP_151243573.1\|3394071_3394284_+	hypothetical protein	NA	NA	NA	NA
WP_014606402.1\|3394908_3395142_+	hypothetical protein	NA	NA	NA	NA
WP_044042430.1\|3395131_3395458_+	hypothetical protein	A0A193GZ33	Enterobacter_phage	3.4e-08	66.7
WP_044042433.1\|3395734_3395944_+	hypothetical protein	A0A2H4IYB3	uncultured_Caudovirales_phage	4.7e-19	66.7
WP_044042434.1\|3395940_3396192_+	hypothetical protein	A0A2H4N7D4	Pectobacterium_phage	3.2e-06	46.2
WP_014606403.1\|3396201_3396426_+	hypothetical protein	A0A2H4J398	uncultured_Caudovirales_phage	5.5e-26	79.2
WP_014606404.1\|3396675_3397272_+	adenine methylase	T1SA14	Salmonella_phage	1.6e-83	73.7
WP_014606406.1\|3397596_3398760_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	3.5e-188	79.1
WP_014606407.1\|3398946_3399450_-	DUF1198 family protein	NA	NA	NA	NA
3398764:3398820	attR	NA	NA	NA	NA
WP_013024950.1\|3399624_3400491_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	6.9e-32	32.9
WP_013024949.1\|3400490_3400703_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_014593112.1\|3400731_3401838_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.2e-113	56.6

DBSCAN-SWA_7

3556653 : 3566741

Streptococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014593021.1\|3556653_3557565_-	lipid A hydroxylase LpxO	H8ZJK8	Ostreococcus_tauri_virus	3.0e-33	35.8
WP_013024791.1\|3557866_3559615_-	amylovoran biosynthesis protein AsmF	A0A1S6L3G8	Erwinia_phage	1.6e-157	46.9
WP_013024790.1\|3559814_3560105_-	hypothetical protein	NA	NA	NA	NA
WP_013024789.1\|3560101_3560449_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.6e-17	45.1
WP_013024788.1\|3560445_3560913_-	hypothetical protein	H9C148	Vibrio_phage	1.3e-29	45.3
WP_013024787.1\|3561109_3561388_-	hypothetical protein	NA	NA	NA	NA
WP_014606493.1\|3561810_3562530_-	LexA family transcriptional regulator	A0A2I6PIE7	Escherichia_phage	2.5e-43	35.4
WP_014606494.1\|3562889_3564143_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	6.6e-92	45.6
WP_014593015.1\|3564152_3565256_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	3.4e-60	42.4
WP_014606495.1\|3565607_3566741_+	porin OmpC	Q1MVN1	Enterobacteria_phage	3.5e-108	55.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017554

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection