CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017308	Corynebacterium pseudotuberculosis 1/06-A, complete genome	3 crisprs	DEDDh,cas3,WYL,cas4,csa3,DinG	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017308_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017308_1

199927-200031

Orphan

Consensus_repeat	Method
CTCTCAATGGTCGGGATAACAGGATTTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017308_1

>merge|NC_017308|1|199927-200031|CRISPRCasFinder
CTCTCAATGGTCGGGATAACAGGATTTGATCTAAACTCATAGAGCATCGATTTTGATGCAAATGAATACTCACGTCCTCTCAATGGTCGGGATAACAGGATTTGA

>NC_017308|1|1|199927-200031|CRISPRCasFinder
CTCTCAATGGTCGGGATAACAGGATTTGA	TCTAAACTCATAGAGCATCGATTTTGATGCAAATGAATACTCACGTC
CTCTCAATGGTCGGGATAACAGGATTTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017308.1\|WP_013241048.1\|191796_193335_-\|monovalent-cation/H+-antiporter-subunit-D-family-protein	unknown	unknown	gnl\|CDD\|236251
NC_017308.1\|WP_014366380.1\|204735_205194_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100006
NC_017308.1\|WP_041478372.1\|185056_186607_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224099
NC_017308.1\|WP_014366372.1\|190803_191112_-\|Na+/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
NC_017308.1\|WP_013241059.1\|201079_201541_+\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NC_017308.1\|WP_014366369.1\|187707_189078_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340903
NC_017308.1\|WP_014523005.1\|205275_206109_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293836
NC_017308.1\|WP_014366373.1\|191377_191797_-\|monovalent-cation/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|237161
NC_017308.1\|WP_014523767.1\|184013_185066_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213226
NC_017308.1\|WP_014366374.1\|193334_193790_-\|cation:proton-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236004
NC_017308.1\|WP_014366383.1\|207480_208287_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NC_017308.1\|WP_013241046.1\|191111_191378_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|237151
NC_017308.1\|WP_014523769.1\|186626_187628_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270262
NC_017308.1\|WP_013241062.1\|204580_204736_+\|DUF4177-domain-containing-protein	unknown	unknown	gnl\|CDD\|379366
NC_017308.1\|WP_014366382.1\|207173_207482_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378611
NC_017308.1\|WP_013241065.1\|206188_206872_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_017308.1\|WP_014366379.1\|201566_203939_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NC_017308.1\|WP_014366370.1\|189206_189908_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_017308.1\|WP_014523773.1\|200142_201081_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224326
NC_017308.1\|WP_014300416.1\|204131_204479_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791

Protein	Function_ID	Function_description	E-value
NC_017308.1\|WP_013241048.1\|191796_193335_-\|monovalent-cation/H+-antiporter-subunit-D-family-protein	gnl\|CDD\|236251	PRK08375, PRK08375, putative monovalent cation/H+ antiporter subunit D; Reviewed.	4.10286e-171
NC_017308.1\|WP_014366380.1\|204735_205194_+\|RidA-family-protein	gnl\|CDD\|100006	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	1.79045e-60
NC_017308.1\|WP_041478372.1\|185056_186607_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	8.37651e-13
NC_017308.1\|WP_014366372.1\|190803_191112_-\|Na+/H+-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	6.72516e-12
NC_017308.1\|WP_013241059.1\|201079_201541_+\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	9.96026e-48
NC_017308.1\|WP_014366369.1\|187707_189078_-\|MFS-transporter	gnl\|CDD\|340903	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters. Glycerol-3-Phosphate Transporter (also called GlpT or G-3-P permease) is responsible for glycerol-3-phosphate uptake. It is part of the Organophosphate:Pi antiporter (OPA) family of integral membrane proteins responsible for the transport of specific organophosphates or sugar phosphates across biological membranes with the simultaneous translocation of inorganic phosphate into the opposite direction. The GlpT group belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.83047e-160
NC_017308.1\|WP_014523005.1\|205275_206109_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293836	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	4.80758e-64
NC_017308.1\|WP_014366373.1\|191377_191797_-\|monovalent-cation/H+-antiporter-subunit-E	gnl\|CDD\|237161	PRK12654, PRK12654, monovalent cation/H+ antiporter subunit E.	5.0317e-73
NC_017308.1\|WP_014523767.1\|184013_185066_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213226	cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	3.45615e-90
NC_017308.1\|WP_014366374.1\|193334_193790_-\|cation:proton-antiporter-subunit-C	gnl\|CDD\|236004	PRK07375, PRK07375, Na+/H+ antiporter subunit C.	5.7906e-38
NC_017308.1\|WP_014366383.1\|207480_208287_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	1.43902e-102
NC_017308.1\|WP_013241046.1\|191111_191378_-\|cation:proton-antiporter	gnl\|CDD\|237151	PRK12612, PRK12612, putative monovalent cation/H+ antiporter subunit F; Reviewed.	4.31044e-18
NC_017308.1\|WP_014523769.1\|186626_187628_-\|extracellular-solute-binding-protein	gnl\|CDD\|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.03899e-91
NC_017308.1\|WP_013241062.1\|204580_204736_+\|DUF4177-domain-containing-protein	gnl\|CDD\|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	0.000502951
NC_017308.1\|WP_014366382.1\|207173_207482_-\|hypothetical-protein	gnl\|CDD\|378611	pfam11241, DUF3043, Protein of unknown function (DUF3043). Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.	0.00736227
NC_017308.1\|WP_013241065.1\|206188_206872_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.49638e-53
NC_017308.1\|WP_014366379.1\|201566_203939_-\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	4.60942e-128
NC_017308.1\|WP_014366370.1\|189206_189908_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.4102e-70
NC_017308.1\|WP_014523773.1\|200142_201081_-\|metallophosphoesterase	gnl\|CDD\|224326	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only].	3.10093e-63
NC_017308.1\|WP_014300416.1\|204131_204479_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	1.47419e-24

>NC_017308.1|WP_014366374.1|193334_193790_-|cation:proton-antiporter-subunit-C
MILALTIAILAAGGVYLVLQRGMLRIVIGMTLISHAANLLIVAIGIPAWRGEPFPSITDLSVAADPVPQAFVLTAIVIAMATTTYMLTLSGLGRSDDTEPEEVADEDSPLQTLGRSTTNAELAEDEAHLVRERARRTHQHHADNDINKEAH
>NC_017308.1|WP_013241048.1|191796_193335_-|monovalent-cation/H+-antiporter-subunit-D-family-protein
MDYVLPLFVGIPLALVAVSAIAPWRVLRDILALITPIGTGAAGVWLFAYVSEHGTIAHSVGKYVGGVAIPFVGDHFSAIMIITCSVVAFASNWFAIVVGETRSRFYSSLSLMLLTGVMGALLTADLFNFFVFIEVMLLPSYGLMAMTGTWARLSAGRTFVLVNLATSTLLLIGVAIVYGVVGAVNIAALAGAAAGNGPVTVAMGIVVVAMVIKAGIFPVHTWLPRSYPATSSSVMGLFSSMHTKVAVYMLMRIYVVIFDLDTRWVWLIITICILSMIVGAFSGLGEGAMRRVLAYQMVNGMPMILVVLAFASHNAKTVIAAGILYALHHMITVGSLILTSGSVEETYGTDKMSKLSGIAHRDPWVAAVFAAGAFSVVGFPPFSGLWGKVFLILGIADSASWQAWLVIAIIILASFGAFLSMLRLWREVYWGAPMNPQRIPESLRVPWLRLAPGAFLIVISFGMFLFAGPLVTATNDASESLLDVHSYSTAVLHQGEDAPVGVATNNTLQGGR
>NC_017308.1|WP_014366373.1|191377_191797_-|monovalent-cation/H+-antiporter-subunit-E
MLHAIKYAFWLVGQVLIAGWVLTKDTLTGSKNLDPCVVRYPLRVTKDWQITVFAASITATPGTMSITLEEDDSAESSDQRYLLVHAVAGADPRSVLADLAHMEETLAPHVKDLHPDFSAVLDRATWEYPSPKPVFKEDK
>NC_017308.1|WP_013241046.1|191111_191378_-|cation:proton-antiporter
MFLIASSIGMAATTIGIIATIILMIRTKDQLTRAVISDMVFYSMIGFYIIWCMANHTQINYEIALLAALVGGILPTMSVARIISKGRR
>NC_017308.1|WP_014366372.1|190803_191112_-|Na+/H+-antiporter-subunit-G
MFYDFTASALILIASFLIITTLIALLGAPDALTRANLMGTATSIALPLILIASLINDIGNGTFWWGNLIRVIITIAGLLIVLAIGSFLMGRALYGVAKEQQD
>NC_017308.1|WP_014366370.1|189206_189908_-|response-regulator-transcription-factor
MHRRRVLVVDDEPQMVQIISYALELEGWEVLSAASAQKGWQLLGEYRCDLVILDVMLPDASGYALCERIRASGDVAATPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRRSGGIVQQESQEIVVGKVSVNPITHAVAIDGRKVDTTATEGKLLQALVSHPNEVVSVKRLLNQVWDTTATQGGRNMVKSTTYRLRKKLENAGLPADSILAVRGQGYIFQHK
>NC_017308.1|WP_014366369.1|187707_189078_-|MFS-transporter
MFAWLQAPGPAAPLPAEQADRIYPRMRLQVFMGIFLGYAGFYLIRNNISAIAPLLIDESGAIDKPAIGIIGNAVLVSYGLSKFFSAMVSDRSNARYFLPLGLALSALMNLIVAFAPWVSASVGLFATVMFLNGWFQGMGYPPCGRIVVQWFSTSERGWKGSLWNTSHNLGAFGLPILVGIGLSITGQNWRAAYWLPALVALLVAVVAFFLIRDNPQSVGLPPIDDYRNDPAKVAEDTGEKISTKDLVFKHILHNRIIMLLAIANVFVYALRYGVLHWITTYLSEQHHMSIGSGLIGFAAFELAGFIGTVLCGWLSDNMFKGNRSAAISLFTLGAGLSIAAYWLAPVGTPFWLMVIFVALIGGFIYGPVGLIGLQALDLSPRNVAGTAAGFTGLFGYLLGATLASTGVGFLVKFAGWNVTFIVFLVFTILILVIFQVIWREEKKLVHDRALQLEQGV
>NC_017308.1|WP_014523769.1|186626_187628_-|extracellular-solute-binding-protein
MLSRWLRLLAVCVVAIVSAVTVYRTLFPTKTAVTIMCSNDVTVCEQWKHDIAHELGLKVRYVSLPTQEALKRLQTGSHGFDVWVGGPSENYRLAAQLGLLQAADLPAADAIPAQFKDPQNRWFGVYASVLSVCSDRDALNRLGVPVPRSWADVMRPELRGWVSAPSPVSSGTGYAMLLSMQAAGLSQEQIARIVDNVDRFTRSGNAPSDVVAHGEAAVAISYEPYCQNKTTRLGRDMEISYPAEGTSFEIASGGVVVQRHTKSAAYEVMNWLLSPSGQTSALRAGLPQIPTNNLVANNISTRLKDSHGIVAVDPTVADSEREQWMSWFSERRI
>NC_017308.1|WP_041478372.1|185056_186607_-|ABC-transporter-permease-subunit
MRTGLWIFSVAVIAAVAVGIPYAMMFSTADMVVAVHSIVLSSSIALCTTIFALCIGTLGALAAAQFSRASVVLLDVILLFQLTIPHFVIGAGWKTIVGCTGIQLCSQCNFSGLMPLLFTFTMAFTPLVYFGQRTALRSVSPREVDAARVAGLHGWALFRTVYQPRLVLFAPALGAFIFSAALSDPVTPNVMAPRASLAATRVWFQSDQAWTALALTLPVALAVVVAGLTYMRLLRGNPALVELLHRTIDTPGQPHHAVGAQVRAPQTVLRLLGAVAGLFVVVAAYRGFVHGSETPMGNAVVNTVGLAFLVLLCSLLLSAVALGARRSCGLRWGRLGHRSIDAVFALLALLPGAAIGCGLRITAHHPGVHGPWASLSLVLLACLPTSLAMTYFLMVYIGPLMSRSEYMVSLLQGVSPLRAVASIVLPRSTNVVILGFLMVFSNASVLAMPLLWVGSPGTPLLMLRLFTLLDAANYPAALYISMTVSLFIVSLAGAIVVSINGVGLGAFARKQVTPWR
>NC_017308.1|WP_014523767.1|184013_185066_-|ATP-binding-cassette-domain-containing-protein
MALVHIQNLSVTSRGAQLLNNVSLDADPGELIVILGRSGAGKSTLLRALAGLIPATGVVEVDGESLSGLPPHQRPIAMMMDQPSLFPHMTVEDNIRFAGDSGTHVAMLSLGIDHLALRYPHQLSTGQQQKVALARALIKQPTLMFFDEPLAHVDTYSSEQLKSQILRTHRRLGCTTFYVTHDINEAFSIADRIIFLSHGEIIQDASPQDMREQPACLDIARHLGASIFVPTTGAVTYSPFGTATAAVTALGANLMIDAHPDLHSDDAMVVVGYPTSATATPTGHQARHLMGATGQVIRNIYMGDHHEVAIETSQGRIVLHCSPDNELAFAAIGDEVLIHCDPEKMWVLPA
>NC_017308.1|WP_014523773.1|200142_201081_-|metallophosphoesterase
MVVKPTRRYAIRVASLTKTLLTATGVLGLTGFSALAWAYRECSNFELKIVELPILEPGVLRNEEEFRILHLSDLHMTPNQVKKQEWVAQLDRLSPDLVINTGDNLSDPKGVPGVLRALGPLLRRPGLFVFGTNDYFAPSMVNPFLYLFGKKRKPSEVPLLWKGMRAAFIEHGWRDANQARHEFQINHVRIAVAGVDDPHHDLDDYEEISGPPNPDADLSIALLHAPEPRVLERFERDGYMLSLSGHTHGGQVCLPGSRALVTNCGIDTQRVQGLHTFGKMWMHVSNGLGTSKFAPIRLFCRPSATLIRVTER
>NC_017308.1|WP_013241059.1|201079_201541_+|GatB/YqeY-domain-containing-protein
MSELKKKIRADLTTAMKAREKERTGTLRMLLAAIQTEETSGTKHELTDGDVLKVIAREIKKRRESAEVYAGAGRQELADAETQEADILAEYQPAQLDDAQLAALVAQAVEEVAAEHGEATMKQMGQVMKIATAKAAGQADGKRLSTAVRAALA
>NC_017308.1|WP_014366379.1|201566_203939_-|penicillin-binding-protein
MSKWNSLNRIVAAAVAAGAASALALSPIAAITGVAAARTSATMQSNLQDLTDGSAPGVSTILDNQGSPIAWLYSQRRYSVPSEAIPQTVKDAIVSIEDRRFYEHKGVDLQGNLRAIAANLFAGGVAQGASTLDQQYVKNYLLLVTSNNADEQAAATETSIPRKLREMRMASTIDKMLSKDEILTRYLNLVPFGNNSFGIEAAARTYFGISASELSLAQSAMFAGMVQSSSYLNPFTNAPAVIERRNTVLDSMVMNGYINQEEADLSKAEPLGVLDAPQGLANGCIAAGDSGFFCDHVLSYLNKKGLSTEQITKGAYTIKTTLDPQTQLAAHNAVTSQVNSQSPGVADVMNIIEPGTNSRKILAMTSSRDYGLDLNAGQTVLPQTSSLVGAGAGSIFKIFTAAAALKQGYGLDTVLQVPRRYEAKGLGDGGAAGCAPGTYCVENSGSYAPQMSLRDALAYSPNTPFVKLIESVGVRDVVDISVALGLRSYSEKGSFDQDNSIADYFKEHNLGSYTLGPTAVNALELSNVAASLASDGMWCEPSPIESVTDHNGNEVYIERPACEQALSKEIANALSNGLSQDIIKGTGSAAAKAAGFRAPTAAKTGTTESHQSAAFLGFNSNFASAAYIYNDGTTVSPLCTSPVSQCGKGTLFGGDEPARTWFTAATATGRAATGALPAYNTKYNRGSSEDLGSSYVGRNGDDVKRELSGKGYKVVTEYTAGNGLPKDHVVRTEVPVPLKSDSTIKLVLSDGTPPRRTTSPLIPRDEGPSDNNRNQGGDDLANLLQQLLGR
>NC_017308.1|WP_014300416.1|204131_204479_+|WhiB-family-transcriptional-regulator
MTTSLMNVRKISPLEEDSLGSLQALDRGDWVMHAHCRHEDPDALFVRGAAQRRAAAICSECPVMMRCRADALDNRVEFGVWGGLTERQRRSILRNNPDVKSWRDFFARGGELSGV
>NC_017308.1|WP_013241062.1|204580_204736_+|DUF4177-domain-containing-protein
MTKWEYATVPLLTHATKQILDTWGEDGWELVNVVPGPNPENVVAYMKREVE
>NC_017308.1|WP_014366380.1|204735_205194_+|RidA-family-protein
MTASENLKNLGIELPKVAAPVAVYIPATKVGNQVWTSGQLPFIDGSLPAVGKVGAEVSAEQAESYARVAALNALAAIDALVGIDKVTRVLKIVGFVASAQDFGGQPGVVNGASNLMGEVFGAAGEHVRSAVGVAELPLNSPVEIEVIVEVAE
>NC_017308.1|WP_014523005.1|205275_206109_+|MBL-fold-metallo-hydrolase
MAKLMGMEHPAYSQLRPVSPSVSVVLCPNPGYAALEGTNSWVVRAEGDARSIVIDPGPEDEGHLNVLNSKANEVGLILLTHRHHDHADGAPRFYQLTGGAPIRAQDPAYCKGGAPLIDGEVITVDGVTPQVEVVFTPGHTADSVCFFVWSGEPHASELEGIITGDTIAGRHTTMISETDGDLGDYLSTLALLEDRGKDVRLMPGHGPDGDDVASFAHWYTQRRRQRLDQIRAARAELGEDVPIKQLIDAVYDDVDPVLRGAAEQSTRVALRYLAEQE
>NC_017308.1|WP_013241065.1|206188_206872_-|Crp/Fnr-family-transcriptional-regulator
MDGVQDILSRAGIFQGVDPVAVGNLIQELESVRFPRGATIFEEGEPGDRLYIITSGKVKLARHSLDGRENLLTVMGPSDMFGELSIFDPGPRTSSAVCVTEVHAATMNSEMLRQWISDHPEISEQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGTQEGGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRGWIRLEGKSVLIVDTEHLAKRAR
>NC_017308.1|WP_014366382.1|207173_207482_-|hypothetical-protein
MAPTLFQAYDIAPTLAQNRTAYQLIRDYSDSMSFLLVFFVPLALALFLLWMDRLEIKVLHPHGIPEKNNAAADITDLPRTETAEEGSDSTDNAKNFLSSEEK
>NC_017308.1|WP_014366383.1|207480_208287_+|endonuclease-III
MSSQYLSELPTFPPAARIKVGRHRATRGQETPLGKKRRARRINRLLSIGYPEAHCELDFKTPLELTVATVLSAQCTDVRVNQVTPRLFSRYPTAWDYANANELELQELIRPTGFYKAKAAHLIGLGQKLVTDFGGEIPQSIQDLVSLPGVGRKTANVVRGNAFGIPGLTVDTHFGRLVRRMGLSSHTDPLKVEAELAELIEKKEWTMFSHRIIFHGRRVCHSRKAACGACFLAAECPSFGLEGPIDPELASALVVGDNREALLELAGA

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Crispr_ID: NC_017308_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017308_2

1776584-1776673

Orphan

I-C,I-E,II-B

Consensus_repeat	Method
CCTTTTCTCCGCGCACGCGGAGGTAGTTC	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NC_017308_2

>merge|NC_017308|2|1776584-1776673|CRISPRCasFinder
CCTTTTCTCCGCGCACGCGGAGGTAGTTCCGGCGGCCCTTATGGTGGGCATACGTCGGGCACCTTTTCTCCGCGCACGCGGAGGTAGTTC

>NC_017308|2|2|1776584-1776673|CRISPRCasFinder
CCTTTTCTCCGCGCACGCGGAGGTAGTTC	CGGCGGCCCTTATGGTGGGCATACGTCGGGCA
CCTTTTCTCCGCGCACGCGGAGGTAGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017308.1\|WP_014367518.1\|1771102_1772461_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NC_017308.1\|WP_014367520.1\|1774530_1775028_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_017308.1\|WP_014367517.1\|1769070_1769889_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NC_017308.1\|WP_032802571.1\|1770596_1770896_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NC_017308.1\|WP_013242528.1\|1785513_1785747_-\|glutaredoxin-like-protein-NrdH	unknown	unknown	gnl\|CDD\|131249
NC_017308.1\|WP_014300910.1\|1780358_1780538_-\|hypothetical-protein	unknown	unknown	unknown
NC_017308.1\|WP_013242526.1\|1782640_1784800_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236179
NC_017308.1\|WP_042437289.1\|1780653_1781676_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
NC_017308.1\|WP_014367530.1\|1778463_1780185_-\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238832
NC_017308.1\|WP_014367533.1\|1782085_1782571_+\|ferritin	unknown	unknown	gnl\|CDD\|153113
NC_017308.1\|WP_014523555.1\|1767263_1768031_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293802
NC_017308.1\|WP_013242516.1\|1769975_1770512_-\|DUF2017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378185
NC_017308.1\|WP_014367519.1\|1772512_1774507_+\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NC_017308.1\|WP_013242530.1\|1787427_1787862_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|378988
NC_017308.1\|WP_032802570.1\|1766490_1767225_-\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NC_017308.1\|WP_014367516.1\|1768103_1768997_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NC_017308.1\|WP_014367534.1\|1784950_1785388_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|179603
NC_017308.1\|WP_014523558.1\|1775024_1776308_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NC_017308.1\|WP_003852698.1\|1786228_1786351_-\|50S-ribosomal-protein-L36	unknown	unknown	gnl\|CDD\|179138
NC_017308.1\|WP_014367535.1\|1786585_1787416_+\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831

Protein	Function_ID	Function_description	E-value
NC_017308.1\|WP_014367518.1\|1771102_1772461_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NC_017308.1\|WP_014367520.1\|1774530_1775028_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.40055e-23
NC_017308.1\|WP_014367517.1\|1769070_1769889_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	3.12334e-23
NC_017308.1\|WP_032802571.1\|1770596_1770896_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	6.42082e-37
NC_017308.1\|WP_013242528.1\|1785513_1785747_-\|glutaredoxin-like-protein-NrdH	gnl\|CDD\|131249	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.	1.51252e-32
NC_017308.1\|WP_013242526.1\|1782640_1784800_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236179	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
NC_017308.1\|WP_042437289.1\|1780653_1781676_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
NC_017308.1\|WP_014367530.1\|1778463_1780185_-\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238832	cd01662, Ubiquinol_Oxidase_I, Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.	0
NC_017308.1\|WP_014367533.1\|1782085_1782571_+\|ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	3.42302e-58
NC_017308.1\|WP_014523555.1\|1767263_1768031_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.30037e-75
NC_017308.1\|WP_013242516.1\|1769975_1770512_-\|DUF2017-domain-containing-protein	gnl\|CDD\|378185	pfam09438, DUF2017, Domain of unknown function (DUF2017). This is an alpha-helical domain found in gene neighborhoods that contain genes encoding ubiquitin, cysteine synthases and JAB peptidases.	1.38837e-72
NC_017308.1\|WP_014367519.1\|1772512_1774507_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	5.49835e-153
NC_017308.1\|WP_013242530.1\|1787427_1787862_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|378988	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several pyridoxamine 5'-phosphate oxidases, and related proteins.	3.86146e-21
NC_017308.1\|WP_032802570.1\|1766490_1767225_-\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	5.09274e-164
NC_017308.1\|WP_014367516.1\|1768103_1768997_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.87386e-132
NC_017308.1\|WP_014367534.1\|1784950_1785388_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|179603	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI.	4.23439e-77
NC_017308.1\|WP_014523558.1\|1775024_1776308_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.94316e-95
NC_017308.1\|WP_003852698.1\|1786228_1786351_-\|50S-ribosomal-protein-L36	gnl\|CDD\|179138	PRK00831, rpmJ, 50S ribosomal protein L36; Validated.	1.69298e-09
NC_017308.1\|WP_014367535.1\|1786585_1787416_+\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	3.06283e-170

>NC_017308.1|WP_014523558.1|1775024_1776308_-|phosphoserine-phosphatase-SerB
MIELDQPQVTVSLRPELTPAVITISGQDRQGVSAAAFRVLAANGVQILDVEQSQFRGFLGLAVFAGVEASKVEILEVGLKETLKTYGQNVKIELQEVAQSSRPRSTHEVVILGNPVEAHDLSRVAQTLANFDANIDTIRGISDYPVTGLELKITVAKREPGAAMPLRKALAELTAELGVDIAIERAGLLRRSKRLICFDCDSTLITGEVIEMLAAHAGREKEVAEVTERAMRGELDFEESLRERVKALAGLDASVIGEVADSIELTPGGRTTIRTLKRLGYKTAVVSGGFIQVLEELAEDLGLDYVRANTLEVVDGKLTGRVIGRIVDRAAKAEFLEEFARESGIEMHQTVAVGDGANDIDMISAAGLGIAFNAKPALREIADTSVNSPFLDEVLHMLGITRADIDAADDSEGKIHRVPLPQQKNEY
>NC_017308.1|WP_014367520.1|1774530_1775028_+|GNAT-family-N-acetyltransferase
MTAHVPTLSNDSVKLRPLLLSDAHDLTATCRDPLTQKYTTVPANYTFAMAEEFIKTEHDNLRWVITVPTSDRFCGQIELRSLATEHNAMNVGYMTAPWARGQGLMTSALLLAVDYAFSRSVRRIELQADSQNKASQRVAEKAGFILMDSSQDTMVYSLLADEYHS
>NC_017308.1|WP_014367519.1|1772512_1774507_+|ATP-dependent-DNA-helicase
MLDATSTLCPMSDSPLALSTDELLDAAVAALGGSRRNGQVSMANAVTKALESERHLAVQAGTGTGKSLAYLVPALRHAQATDSTIIVSTATIALQRQLVERDLPRLADALEPHMSRRPTFAIMKGRANYVCMNKIAAAEEPEDALIDEEDLSWLGKHVARIYEWANETEVGDRDSLDPGVPDLAWRQVSVSAQECIGASRCPHGEECFAELARKKAHDVDVIVTNHALLAIDALSDVNVLPEHEVVIVDEAHELDGRITAVATNEIGVTALTMSSRRAGKLGAGEKDQKLIDIAKEWEDAMLAIEPGRLTSLPDSLKQQTVALRDAIWSLREHISRVPEGEAANDPERHAERMSLSNHLNDQHDSVIRVLSVFEEEDAASQEDVVWVLHDERRGVMIKVAPLSIAGLLHTRLFSENTVVLASATLNIGGNFNAMAASWGLPKGSWDSLDAGTPFNPATSGILYTPNSLPDPGRDGLSPEVLDEIYELIMAAGGRTLGLFSSRRAAQQATDAMRTRLPFDVLCQGDDTTGALVEKFSKQENTCLFGTLSLWQGVDVPGRSCSLVIIDRIPFPRPDDPLLQARKDAADADGRNGFMEVAATHAALLIAQGAGRLLRSVTDRGVVAILDRRIVTKRYGAFFIRSLPAFWRTNDPQVVRGALSRLVAR
>NC_017308.1|WP_014367518.1|1771102_1772461_+|nicotinate-phosphoribosyltransferase
MSCASALSVFKAKLVCVTEFESTALLTDMYELTMLQSALADGTASRSCTFEVFSRRLPNERRYGVVAGTARVLEAIKHYRFTEEQLASLTFLDATTIDFLRSYKFQGQIDGYREGELYFPSSPILTIRGTFAECVILETLILSIMNADSAVASAAARMVTAADGRPIFEMGSRRTHEYAAVTAARAAYLAGFVGTSNLEAVHRYGIPGSGTAAHAWTLLHVNDDGTPNESAAFQSQINVLGVGTTLLVDTYDIAKGVKTAMEVAGPQLGAVRIDSGDLGVMTRKVRQELDSLGAHNTGIVVSSDLDEYAIAGLRGNPVDAFGVGTSVVTGSGAPTAGMVYKLVEVDGHPVAKRSRGKAMVGGTKRAIRTHRATGTAVEEIVFPYDHDTPQIGQLNSYELTIPLMRNGVAVDNLPTLEESRAYLAEQLITLPWEGLALSKDEPVLSTRFIGFK
>NC_017308.1|WP_032802571.1|1770596_1770896_-|ATP-dependent-Clp-protease-adapter-ClpS
MSSPMATPELDEALSVDVASSENLPWMCIVWDDPVNLMSYVTYVFQTILGYSKRRAIELMMQVHTEGKAVVSSGERDKVEGDVKKLHTAGLWATMQQGG
>NC_017308.1|WP_013242516.1|1769975_1770512_-|DUF2017-domain-containing-protein
MQPWKKKKGLMRGVHFACVFEPMEREVLGNLASTVSEALIHRAQSAPKDELAELTGMPSGHKEAPKDPALARLLPDFEKEGDEEFEGDNSLLRCLHETDITRAKIEHLYVLGQALGPDGGVHVDITETEAHAWVAALNDIRLYVASGEVFGEDAEQDRESLVEWLAYNQESLLNAMMG
>NC_017308.1|WP_014367517.1|1769070_1769889_-|rhomboid-family-intramembrane-serine-protease
MSLRYFFTRLCFIMTNRFNPYAQSDKKTYGGVSTSGGYLPHEYGTQYLPTSDYPVNRAVQRGMKRTSLRSMGRKRLADATILALGYVVVIWAVHIVNTVFFGGTLAQELGVHPLDGSSIWHIFTSPLVHGSYMHISANTLPGLIFVFLIGLSGRRPFWEVTMITAVVGGMGTWIFGGIGTTHIGASGLIYGWLAYLVVRGIFNKSFSQVVLGMVLAFMYGGLIWGVLPGDVGVSWQAHLFGAIGGLIAGATITSDDPPALKARREQQALHRA
>NC_017308.1|WP_014367516.1|1768103_1768997_-|glutamate-racemase
MAYVKKDLGADSLHPEAPSVKPSVVYEGTIDASSPIGIFDSGVGGLTVARAIMEQLPQESVIYIGDTANSPYGSKPIAQVRELSMRIGDELVARGCKMIVIACNTATSAALRDLRERYSIPVVGVILPAVRRAVAATRNGKIGVLGTQGTIASGAYQELFAASPGVEVYAQACPSFVSFVERGITSGRQILGVAQGYTEGLQSAGVDTLVLGCTHYPLLTGVIQLAVGDNVTLISSSEECVKDVLKVLSRNDMLAEATADKSPSRSFESTGDPALFEQLAMRFLGPHVTYVEKLRQV
>NC_017308.1|WP_014523555.1|1767263_1768031_-|MBL-fold-metallo-hydrolase
MKLTILGSSGSLGAPDNAASGYLIQMDNAPSILMDMGPGVLAQLERAQNPSDAHVVFSHLHADHCVDFPSLLVWRRYHPTAAAKGRNLCFGPTDTPVRLGRLSADSVDNIDDMSDTFAFTPWQNAKEELVGTVSITPYSVVHPIESFALRVEHKRSGKVVAYSGDSSYTENLIECARDADVFLCEATWGETSEGKVPNMHMSGEEAGRIARIAGAKRLILVHIPPWGNAKAALEKARSEFDGPVDISYQGMEIHI
>NC_017308.1|WP_032802570.1|1766490_1767225_-|ribonuclease-PH
MTTSNFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYEEDSRADVDMNVIMQNGRFVEIQGTGEHNTFDRDELARILDFAEKGCTELVAAQKAALGIA
>NC_017308.1|WP_014367530.1|1778463_1780185_-|cytochrome-c-oxidase-subunit-I
MTAVAPRLEDYSEPTRPAPTGGARKGTLAWKMLTTTDHKQLGIMYIIMSFVFFFLGGLMALLIRAELFSPGLQYLSNEQFNQLFTMHGTVMLLLFGTPIVWGFANYILPLQIGAPDVAFPRLNAFGFWVTMIGAAAMLSGFLTPGGAADFGWTMYLPLADSIHSPGIGSDMWIVGVGATGVGTISSAINMITTILCMRAPGMTMFRMPIFCWNIFVASVLVLMIFPLLTAAALGVLYDRKLGGHLFDPGNGGAIMWQHLFWFFGHPEVYVLALPFFGIVSEIVPVFARKPMFGYIGLVFATLSIGSLSMAVWAHHMFVTGAILLPFFSFMTFLISVPTGVKFFNWLGTMWKGHVSWETPMTWTMGFLVTFLFGGLTGIMLASPPLDFHISDTYFVVAHFHYTLFGTVVFASFAGVYFWFPKMTGRMLDERLGKIHFWITFVGFHGTFLVQHWLGNEGMPRRYADYLDSDGFTTLNQISTIFSFLLGMSVLPFIWNVIKSWRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTSLPRIRSERPAFELHYPHMVERMRREAHVGHHVEPVTVKTK
>NC_017308.1|WP_014300910.1|1780358_1780538_-|hypothetical-protein
MLWGGKGELTLYSSFGLITAGGEVGELVGVMYKYVPTLLCGAYHWNYLENAVFLAELIV
>NC_017308.1|WP_042437289.1|1780653_1781676_-|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MGDESPSRKGETVESYDSYLESHKKPVSAINWNSIPDEKDLEVWDRLTGNFWLPEKVPVSNDLKSWGTLNDLEKTTTMRVFTGLTMLDTIQGTVGAVSMIPDAITPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIVLSYYEGADPLKRKVASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQQAVREQTPERQEELKEYTFDLLYDLYDNEIQYTEDLYDDLGWTEDVKRFLRYNANKALNNLGYEGLFPADECKVSPAILSALSPNADENHDFFSGSGSSYVIGKAENTTDDDWDF
>NC_017308.1|WP_014367533.1|1782085_1782571_+|ferritin
MSINEKLAAALNNQITAELEASMVYLQLSYILDDLSLTGMRNWMQAQHKEELDHAAQFSKHLLDRDYRPQIGDIAPPKLDANSAVEAFEASLAHEQKVTAMIRELAEIADSVKDYDSRPLIDRFLEEQIEEEANVKEILDRLRIADTGSGILRIDAELAER
>NC_017308.1|WP_013242526.1|1782640_1784800_-|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MSQSLGKHVAEPVSRTEQLDYHALNALLNLYNADGKIQFDKDREAANQFFLQHVNQNTVFFHDLEEKIEYLVENNYYEPGIIEKYEFAFIKDLFKQAYAHKFRFKSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLADGDQNLARNLVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERVYGKAFADISVSEHYAEMVEDPRIRKSKINAREFFQTIAEIQFESGYPYIMFEDTVNKANPIEGRVNMSNLCSEILQVNTPSLFNDDLTYEEVGEDISCNLGSLNIAMTMDSPDFAKTIETAIRGLTAVSEQTAINSVPSIRKGNDAAHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYQCLVASNKLARERGRTFVGFETSKYATGEYFDGFDPADFAPKTEKVAKIFADSSIYTPTAADWADLKDSVAAHGLYNRYLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDNENLDYFADAYEIGFEKVIDTYAVATKYVDQGLSLTLFFKDSATTRDINRAQIYAWRKGIKTLYYIRLRQVALMGTEVEGCVSCML
>NC_017308.1|WP_014367534.1|1784950_1785388_-|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MLVVYFSSATENTKRFVQKLGFPAKRIPLHKSSPELVVDEPYVLVCPTYGGGASISGGNTRPVPAQVIRFLNNEHNRSLLRAVIAGGNSNFGLDFGKAGDTIAAKCKVPYVYRFELLGTDEDVRLVRDGLLGNAAVLGLLPEPVA
>NC_017308.1|WP_013242528.1|1785513_1785747_-|glutaredoxin-like-protein-NrdH
MSITVYTKPACVQCNATKKALDRAGLDYTLVDISIDDEARDYVMALGYLQAPVVEVNGEHWSGFRPERISSLVAQVA
>NC_017308.1|WP_003852698.1|1786228_1786351_-|50S-ribosomal-protein-L36
MKVRKSLRSLKNKPGAQVVRRRGKVYVINKKDPRFKARQG
>NC_017308.1|WP_014367535.1|1786585_1787416_+|ammonia-dependent-NAD(+)-synthetase
MDTLRDTIKNRLRTRSAIDPAEEITARVDFLAQYLSASGARGFALGISGGQDSTLAGRLAQLAVEKLRKEGYPAEFWAIRLPYGVQADEEDARTALAFIQPDHSVTINIKPATDACAADVAQALGLETLNDFNKGNVKARQRMIAQYALAGEKGLLVIGTDHAAENVTGFFTKFGDGAADILPLAGLSKRQGAQLLQALNAPDSTWLKVPTADLEEERPALPDEVALGVTYSDIDTYIEGSGEVSEKAATRIEHLWKIGEHKRHLPVEPGDTWWRR
>NC_017308.1|WP_013242530.1|1787427_1787862_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MDNNSEAIRVLGQDEIIERLRGEPVGRIVVRRKDDMDIFPVNYVVDTSQGGPRIYLRTAEGTKLFTVNLNPQVLFEVDHFNEESGWSVVVRGTAYVVKDTAEIHHAESLDLRPWLPTLKYNFICIPCIELSGRAFTFGEEPERY

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Crispr_ID: NC_017308_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017308_3

1795842-1795977

Orphan

Consensus_repeat	Method
CTGGCCGATACTGCCTTTATCTGAACGGGGTTTGTGGGGATT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_017308_3

>merge|NC_017308|3|1795842-1795977|CRISPRCasFinder
CTGGCCGATACTGCCTTTATCTGAACGGGGTTTGTGGGGATTTAGTAAAGCACCGAGACGGCACAGGACGTTACCCCAGCACTGCTTCAGAGACCTGGCCGATACTGCCTTTATCTGAACGGGGTTTGTGGGGATT

>NC_017308|3|3|1795842-1795977|CRISPRCasFinder
CTGGCCGATACTGCCTTTATCTGAACGGGGTTTGTGGGGATT	TAGTAAAGCACCGAGACGGCACAGGACGTTACCCCAGCACTGCTTCAGAGAC
CTGGCCGATACTGCCTTTATCTGAACGGGGTTTGTGGGGATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017308.1\|WP_014523574.1\|1810950_1811523_+\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|225007
NC_017308.1\|WP_014367533.1\|1782085_1782571_+\|ferritin	unknown	unknown	gnl\|CDD\|153113
NC_017308.1\|WP_014367540.1\|1796399_1797134_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224565
NC_017308.1\|WP_013242528.1\|1785513_1785747_-\|glutaredoxin-like-protein-NrdH	unknown	unknown	gnl\|CDD\|131249
NC_017308.1\|WP_014367546.1\|1809655_1810912_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NC_017308.1\|WP_013242526.1\|1782640_1784800_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236179
NC_017308.1\|WP_013242543.1\|1797292_1797754_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_017308.1\|WP_003852698.1\|1786228_1786351_-\|50S-ribosomal-protein-L36	unknown	unknown	gnl\|CDD\|179138
NC_017308.1\|WP_014367536.1\|1787943_1788360_-\|hypothetical-protein	unknown	unknown	unknown
NC_017308.1\|WP_014367534.1\|1784950_1785388_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|179603
NC_017308.1\|WP_013242530.1\|1787427_1787862_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|378988
NC_017308.1\|WP_014367543.1\|1799965_1800298_+\|CrcB-family-protein	unknown	unknown	gnl\|CDD\|376809
NC_017308.1\|WP_013242532.1\|1788443_1788842_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NC_017308.1\|WP_014524047.1\|1802951_1803701_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NC_017308.1\|WP_014523573.1\|1800350_1802951_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|226957
NC_017308.1\|WP_014367542.1\|1799624_1799969_+\|fluoride-efflux-transporter-family-protein	unknown	unknown	gnl\|CDD\|234656
NC_017308.1\|WP_014523569.1\|1790994_1791726_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237019
NC_017308.1\|WP_013242551.1\|1811587_1812427_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|197715
NC_017308.1\|WP_014367535.1\|1786585_1787416_+\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831
NC_017308.1\|WP_014524045.1\|1797859_1799497_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|236050

Protein	Function_ID	Function_description	E-value
NC_017308.1\|WP_003852698.1\|1786228_1786351_-\|50S-ribosomal-protein-L36	gnl\|CDD\|179138	PRK00831, rpmJ, 50S ribosomal protein L36; Validated.	1.69298e-09
NC_017308.1\|WP_014367535.1\|1786585_1787416_+\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	3.06283e-170
NC_017308.1\|WP_014367540.1\|1796399_1797134_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	2.18994e-09
NC_017308.1\|WP_013242528.1\|1785513_1785747_-\|glutaredoxin-like-protein-NrdH	gnl\|CDD\|131249	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.	1.51252e-32
NC_017308.1\|WP_014367546.1\|1809655_1810912_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NC_017308.1\|WP_013242526.1\|1782640_1784800_-\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236179	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
NC_017308.1\|WP_013242551.1\|1811587_1812427_-\|GAF-domain-containing-protein	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.3513e-15
NC_017308.1\|WP_014523569.1\|1790994_1791726_+\|hypothetical-protein	gnl\|CDD\|237019	PRK11907, PRK11907, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase.	2.19774e-05
NC_017308.1\|WP_014367533.1\|1782085_1782571_+\|ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	3.42302e-58
NC_017308.1\|WP_014367534.1\|1784950_1785388_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|179603	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI.	4.23439e-77
NC_017308.1\|WP_013242530.1\|1787427_1787862_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|378988	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several pyridoxamine 5'-phosphate oxidases, and related proteins.	3.86146e-21
NC_017308.1\|WP_014523573.1\|1800350_1802951_-\|FtsX-like-permease-family-protein	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	4.94486e-22
NC_017308.1\|WP_013242532.1\|1788443_1788842_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	1.12191e-18
NC_017308.1\|WP_014524047.1\|1802951_1803701_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	3.31659e-109
NC_017308.1\|WP_014523574.1\|1810950_1811523_+\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|225007	COG2096, COG2096, cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism].	1.80158e-80
NC_017308.1\|WP_014367542.1\|1799624_1799969_+\|fluoride-efflux-transporter-family-protein	gnl\|CDD\|234656	PRK00134, ccrB, fluoride efflux transporter family protein.	8.07344e-40
NC_017308.1\|WP_013242543.1\|1797292_1797754_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	0.000158371
NC_017308.1\|WP_014367543.1\|1799965_1800298_+\|CrcB-family-protein	gnl\|CDD\|376809	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB). CRCB is a family of bacterial integral membrane proteins with four TMs.. Over expression in E. coli also leads to camphor resistance.	9.83635e-14
NC_017308.1\|WP_014524045.1\|1797859_1799497_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|236050	PRK07564, PRK07564, phosphoglucomutase; Validated.	0

>NC_017308.1|WP_014523569.1|1790994_1791726_+|hypothetical-protein
MLGSSPPPPRKKFTLKLILAWIAVALSGFVLLGAIFAPNSIKDALGTAIVAISIGLPGVWYLIHSRRKSHGAPPLKHHWGKIATTSIVLFFVGGSIIPTQAKQEPALPSPSTSTTAPTTKTTTSSTRSTTSSTSSVSTASSTSTEPSSTTTKEAALPAPASEIVDERPIGFAGVPDRQPPTPAPTPVQQFVAPPPPPVNNPPAQQNYVHPGAFCNGGSGISKRGVPMTCAPGKDGRNRWKSAG
>NC_017308.1|WP_013242532.1|1788443_1788842_+|helix-turn-helix-transcriptional-regulator
MSEDTKKCTFNQESHYANFAAEVFTLLSDATRVRIILALRDAEKSVNELAEEIGKSPTTTSQHLAKLRWGKIVEARQDGNRVFYRLIDAHARELVTLAVFHAQRCVVNTAPAHHRNSDGSITADATPPGALR
>NC_017308.1|WP_014367536.1|1787943_1788360_-|hypothetical-protein
MYGERAISRENVERLTQLLISDEALRWIREFEAYRSGLANVDEHERPDKRTTIFVDAADLVWAWISEPGETGFRSYAQELIARELEQETAKTADCAELAALWSESQMAVLSQVVDQWEFNNPPFVGMVDGDGGVVRCF
>NC_017308.1|WP_013242530.1|1787427_1787862_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MDNNSEAIRVLGQDEIIERLRGEPVGRIVVRRKDDMDIFPVNYVVDTSQGGPRIYLRTAEGTKLFTVNLNPQVLFEVDHFNEESGWSVVVRGTAYVVKDTAEIHHAESLDLRPWLPTLKYNFICIPCIELSGRAFTFGEEPERY
>NC_017308.1|WP_014367535.1|1786585_1787416_+|ammonia-dependent-NAD(+)-synthetase
MDTLRDTIKNRLRTRSAIDPAEEITARVDFLAQYLSASGARGFALGISGGQDSTLAGRLAQLAVEKLRKEGYPAEFWAIRLPYGVQADEEDARTALAFIQPDHSVTINIKPATDACAADVAQALGLETLNDFNKGNVKARQRMIAQYALAGEKGLLVIGTDHAAENVTGFFTKFGDGAADILPLAGLSKRQGAQLLQALNAPDSTWLKVPTADLEEERPALPDEVALGVTYSDIDTYIEGSGEVSEKAATRIEHLWKIGEHKRHLPVEPGDTWWRR
>NC_017308.1|WP_003852698.1|1786228_1786351_-|50S-ribosomal-protein-L36
MKVRKSLRSLKNKPGAQVVRRRGKVYVINKKDPRFKARQG
>NC_017308.1|WP_013242528.1|1785513_1785747_-|glutaredoxin-like-protein-NrdH
MSITVYTKPACVQCNATKKALDRAGLDYTLVDISIDDEARDYVMALGYLQAPVVEVNGEHWSGFRPERISSLVAQVA
>NC_017308.1|WP_014367534.1|1784950_1785388_-|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MLVVYFSSATENTKRFVQKLGFPAKRIPLHKSSPELVVDEPYVLVCPTYGGGASISGGNTRPVPAQVIRFLNNEHNRSLLRAVIAGGNSNFGLDFGKAGDTIAAKCKVPYVYRFELLGTDEDVRLVRDGLLGNAAVLGLLPEPVA
>NC_017308.1|WP_013242526.1|1782640_1784800_-|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MSQSLGKHVAEPVSRTEQLDYHALNALLNLYNADGKIQFDKDREAANQFFLQHVNQNTVFFHDLEEKIEYLVENNYYEPGIIEKYEFAFIKDLFKQAYAHKFRFKSFLGAYKYYTSYTLKTFDGRRYLERFEDRVCMVALTLADGDQNLARNLVDEIMTGRFQPATPTFLNSGKAQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNLREAGAPIKKIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLNAHHPDILNFLDTKRENADEKIRIKTLSLGVVIPDITFELAKRNDDMYLFSPYDVERVYGKAFADISVSEHYAEMVEDPRIRKSKINAREFFQTIAEIQFESGYPYIMFEDTVNKANPIEGRVNMSNLCSEILQVNTPSLFNDDLTYEEVGEDISCNLGSLNIAMTMDSPDFAKTIETAIRGLTAVSEQTAINSVPSIRKGNDAAHAIGLGQMNLHGYLGREHIYYGSEEGLDFTNAYFAAVLYQCLVASNKLARERGRTFVGFETSKYATGEYFDGFDPADFAPKTEKVAKIFADSSIYTPTAADWADLKDSVAAHGLYNRYLQAVPPTGSISYINHSTSSIHPIASKIEIRKEGKIGRVYYPAPHMDNENLDYFADAYEIGFEKVIDTYAVATKYVDQGLSLTLFFKDSATTRDINRAQIYAWRKGIKTLYYIRLRQVALMGTEVEGCVSCML
>NC_017308.1|WP_014367533.1|1782085_1782571_+|ferritin
MSINEKLAAALNNQITAELEASMVYLQLSYILDDLSLTGMRNWMQAQHKEELDHAAQFSKHLLDRDYRPQIGDIAPPKLDANSAVEAFEASLAHEQKVTAMIRELAEIADSVKDYDSRPLIDRFLEEQIEEEANVKEILDRLRIADTGSGILRIDAELAER
>NC_017308.1|WP_014367540.1|1796399_1797134_-|thioredoxin-domain-containing-protein
MSSASSVKKVKNPTEKSNGFLWALLALLVVVIAVVAFIVIQGRGAQAEKFADRERETISFTGEVTDNAIQLKAANVKSDAKKIDLYEDYSCSHCAELGKATDKPMKEAIEKGEIVVNLRFLNFLDRGNEDGSSSKGGAAALAIANAGEWDAYWNYRTLLMEEQNSIYGKWSNEDFANAAKNVGASDGVVQKIRDGAEKQHFLEAAKANTDKLEKDSGKVSSPRVFIDGKEVTEKINTWVTQATS
>NC_017308.1|WP_013242543.1|1797292_1797754_-|DoxX-family-protein
MKRSKKTMALDAMSFFARFFMAYIWISAGISKVGSHLETAQSVKAYEIFSDTWANWISMIIGPLEIAGGVVLLLGIFLRKASWVSTFVMLLFIVGLAQAWARGLSIDCGCFGPQGITENTAADYAKVIARDIIFVILSLWTVYRPFKKWALYA
>NC_017308.1|WP_014524045.1|1797859_1799497_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MAHERAGQLAQPQDLIDIAEVVTAYYTRHPDVDNPDQQVSFGTSGHRGSSLDTAFNEQHILAITQAIVEYRRSKNIDGPLFIGRDPHALSEPAMVSALEVLLANDVTVLVDDRGRYTPTPAVSHAILTHNAGTTTKRADGIVITPSHNPPRDGGFKYNPPHGGPADTDATDWIANRANQLLREGLRGVHRVPVQGVLDPRARTYNFLESYVADLPNVVNIAAIRDSGLHIGADPMGGASVDYWGAIAEHHKLNVTVTNPLVDATWRFMTLDTDGKIRMDCSSPNSMASLVNNRDQFDISTGNDADADRHGIVTPDAGLMNPNHYLAVAIDYLFTHRPQWPTDIAVGKTLVSSSMIDRVVNNLGRKLIEVPVGFKWFVPGLVDGSVGFGGEESAGASFLRHDATVWSTDKDRLILNLLAAEMTAVTGKSPSQRYRELTQDYGAPIYARIDAPASREQKAILKGLSPEDISATELAGESITAKLTHAPGNGAALGGLKVTTDNAWFAARPSGTEQKYKIYAESFLGESHLQQVQKEAQALVDEILQA
>NC_017308.1|WP_014367542.1|1799624_1799969_+|fluoride-efflux-transporter-family-protein
MDRVPLSVVVGSGAALGAAARFLITSQVSLIDAPSTIMLINIVGATLMGYFRPSPFWGTGFLGGFTSFSAFALYLAAPQLSWFSATILFLSTVFGCVAGWILGNALAHRKTTAP
>NC_017308.1|WP_014367543.1|1799965_1800298_+|CrcB-family-protein
MTLYALGAVLLGGFCGGVCRLWLGALGPYRGTLVANVAACIALAWVWKNDPSQEIILYTGTGLAGALSTWSTLAKELGTDIIQGRWLAALGYLAVTCALGIGSALLILHL
>NC_017308.1|WP_014523573.1|1800350_1802951_-|FtsX-like-permease-family-protein
MGQHSVKGREPSSPASSPSKDSSTAMLRVSIRSVLAHKVRLALTLLAVVLGTAFVSGSLMFTASLSESFDAVVDDNLAGIDAVVSGKEKPITVAEIEALRSDKNVQAVDINGSTNVVVATPDRKAIQTGAGRASVSIFHGEGSASNRPMKIADGTAPKEDADVVIATTTASAHNIKIGDSLLVIDPMGQREVKVVGTYVPASSNAPGLTLLTSENGYLANYTQGVVGSVIVKSAGMSSEDLVKYLSDTYPQYKVDTGSAIAEQITGSIKKALSFVNYFLVAFGLIALLVGTFIIANTFSMIVAQRLKEFALLRALGVSKKQLTRSVVFEAIIIGLVGSIIGIFGGIGLVRLIQFVMAKFGMEIPAAGLGLTVTSVLLPLALGTIVTVVSAWAPARRAGAVRPVEAIRSTETASESSLKLRTIVGVIGIGLGIAAALVGIFAEDAATKTRAISVGVGALFVIVGVFAASPAMSIPLVGALGRVLGAPFGAVGKLSATNSRRNPRRTATTAFALTLGVALVTTIGMLSATMKSSISDLVTSEVKAEFILSGPQGGHFPVPAEAEEKVRETEGVGSVTSMGFAPVTLGSEELDVVSHPRGTALVNGKIDDVVNAKDVEGSLDLTAADRVVAKKSYLEAHNLKIGDQVPLRLEDGTEIAHATIVGSFSESKILGDVIASSKTIEGKNVLSTISVLFVNGDGTKTTDELRDGLNKAVEDFLVVRVQTSKEYAGEQASVVTQMMNILYALLGLAVVIAIIGIINTLALNVIERRQEIGMLRAVGTQRRQIRTMISIESVQIALYGAVLGIVIGLGLGWAFLKVLSSQGLGTISVPVAEIVWLLVGSAVVGVVAALWPARRAAKTPPLDAIAD
>NC_017308.1|WP_014524047.1|1802951_1803701_-|ABC-transporter-ATP-binding-protein
MSITDSKRPAARAVALHKSYGQGETMVRALDGIDVEFAANEFTAIMGPSGSGKSTLMHCMAGLDSITSGSTFIGETDLSQLKDKQMTALRRDRLGFIFQSFNLVPTLTAAENITLPRDIAGRKVDQKWFEEVTQRLGLSQRLKHRPAELSGGQQQRVACARALVSQPEIIFCDEPTGNLDSNSSAEVLSILRTAVDQDGQTVVIVTHDPRAASYADRVVFLADGRIVQDLRAPSTEEILQTMASIEELT
>NC_017308.1|WP_014367546.1|1809655_1810912_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MKERFLVTGGARLEGSVRVSGAKNSVLKLMAAALLAEGTTTLTNCPQILDVPYMIRVLEGLGCSVESDNGTVRISTPAEISSDADFDAVRQFRASVCVLGPLTARCGRAVVALPGGDAIGSRPLDMHQSGLEKLGAKTRIQHGAVVAEAEQLRGAKITLDFPSVGATENILTAAVLADGTTILDNAAREPEIFDLCTMLKEMGADISGEGTSTITITGVDKLYPTEHGVIGDRIVAGTWAYAAAMTQGDITVGGIAPRNLHLPLEKLKVAGAEVETYEHGFRVRMNRRPQAVDYQTLPFPGFPTDLQPMAIGIATVAQGTSVITENIFEARFRFVDELMRLGADATVDGHHVVLRGVEQLSSTPVWSSDIRAGAGLVLAGLCAEGVTEVHDVFHIDRGYPNFVEDLRRLGATIERVSD
>NC_017308.1|WP_014523574.1|1810950_1811523_+|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MAVHLTKIYTRTGDDGTTGLSDFSRVSKNDPRLIAYADCDELNASLGLVLALSEVPDTVRSCLSRIQNELFDAGADLATPIAEDPEYPPLRIEQSYIDHLEKDCDFFNENLEKLNSFILPGGTPAAALLHSSRAIARRAERAAWGAIEAHPDTTSVLPAKYLNRLSDLLFILSRVANDSDDVKWVPGGSR
>NC_017308.1|WP_013242551.1|1811587_1812427_-|GAF-domain-containing-protein
MESQRVKDDDDAIRSALASLKNATGIPVTMYATVQSDNRLLINQWVGLRTPALQNLTIENGVGVGGRVVKTRRPVGVSDYMRANVISHDLDPVIQDEGLHSIVAVPVIVHREVRGVLYVGVHSPVRLGDKVIEEVTMTARVLEQDLAIIAASRRSEGLRGAAKQGRMMNGAEWEQIRATHSKLRMLANRIDHEELRQELEELCDQMVAPVHVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGALP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1698195 : 1770896

Agrobacterium_phage(20.0%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014367461.1\|1698195_1699482_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.8e-132	58.4
WP_041478302.1\|1699642_1702435_-	aminobenzoate synthetase	A0A0B5J984	Pandoravirus	5.2e-81	34.5
WP_013242459.1\|1702511_1703141_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.4e-37	43.5
WP_013242460.1\|1703156_1703756_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.3e-42	48.3
WP_014524025.1\|1703958_1705311_-	trigger factor	NA	NA	NA	NA
WP_014300878.1\|1706097_1706340_+	hypothetical protein	A0A1W6JRB8	Corynebacterium_phage	3.9e-09	48.4
WP_014523535.1\|1706475_1707252_+	hypothetical protein	NA	NA	NA	NA
WP_014367466.1\|1707338_1708349_-	pirin family protein	NA	NA	NA	NA
WP_013242465.1\|1708466_1708940_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_014367467.1\|1709006_1709627_-	DSBA oxidoreductase	NA	NA	NA	NA
WP_014523536.1\|1712987_1713566_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_014367472.1\|1713684_1714077_+	globin	NA	NA	NA	NA
WP_014523538.1\|1714088_1714985_+	DMT family transporter	NA	NA	NA	NA
WP_013242473.1\|1714988_1715597_-	hypothetical protein	NA	NA	NA	NA
WP_013242474.1\|1715602_1716031_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_014522869.1\|1716235_1717906_-	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	1.3e-47	27.9
WP_014367473.1\|1718093_1718654_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_014367476.1\|1719179_1720934_+	hypothetical protein	NA	NA	NA	NA
WP_014367477.1\|1720930_1722469_+	YcaO-like family protein	NA	NA	NA	NA
WP_014523541.1\|1722495_1723974_+	nitroreductase	NA	NA	NA	NA
WP_014367479.1\|1723970_1726574_+	lantibiotic dehydratase	NA	NA	NA	NA
WP_014367480.1\|1726573_1727587_+	hypothetical protein	NA	NA	NA	NA
WP_014367481.1\|1727583_1728564_+	hypothetical protein	NA	NA	NA	NA
WP_014733038.1\|1728833_1730285_+	YcaO-like family protein	NA	NA	NA	NA
WP_014367484.1\|1730306_1731065_-	permease	NA	NA	NA	NA
WP_014367485.1\|1731061_1731985_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.2e-19	26.1
WP_014367486.1\|1732075_1734121_-	bifunctional copper resistance protein CopD/cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_014367488.1\|1734713_1736999_+	carbon starvation protein A	NA	NA	NA	NA
WP_014367489.1\|1737018_1737219_+	YbdD/YjiX family protein	NA	NA	NA	NA
WP_014367490.1\|1737547_1739374_-	S8 family peptidase	A0A1B0T6A2	Bacillus_phage	6.8e-29	31.8
WP_014524030.1\|1739649_1740642_+	oxidoreductase	NA	NA	NA	NA
WP_014523547.1\|1740771_1741575_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_014523548.1\|1741640_1742300_+	oligoribonuclease	M4M9I5	Vibrio_phage	8.4e-22	35.0
WP_014367495.1\|1742479_1743307_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_014523549.1\|1743360_1744551_-	L,D-transpeptidase	NA	NA	NA	NA
WP_014367502.1\|1745328_1746327_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_014524032.1\|1746465_1747092_+	isochorismatase family protein	A0A2K9L2K0	Tupanvirus	1.0e-16	32.6
WP_014800825.1\|1747081_1747426_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_013242498.1\|1747549_1747825_-	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_013242499.1\|1747913_1748393_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_013242500.1\|1748430_1749084_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013242501.1\|1749096_1749486_-	holo-ACP synthase	NA	NA	NA	NA
WP_014523551.1\|1758936_1759242_-	hypothetical protein	NA	NA	NA	NA
WP_014655722.1\|1759403_1760519_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_014367508.1\|1760515_1761142_+	response regulator transcription factor	NA	NA	NA	NA
WP_014367509.1\|1761185_1762217_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_014524035.1\|1762397_1763156_-	hypothetical protein	NA	NA	NA	NA
WP_014522461.1\|1763247_1763577_-	hypothetical protein	NA	NA	NA	NA
WP_041478315.1\|1763656_1764316_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_014367512.1\|1764908_1765355_+	hypothetical protein	NA	NA	NA	NA
WP_014367513.1\|1765442_1765802_+	DUF3817 domain-containing protein	NA	NA	NA	NA
WP_014367514.1\|1765870_1766494_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
WP_032802570.1\|1766490_1767225_-	ribonuclease PH	NA	NA	NA	NA
WP_014523555.1\|1767263_1768031_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_014367516.1\|1768103_1768997_-	glutamate racemase	NA	NA	NA	NA
WP_014367517.1\|1769070_1769889_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_013242516.1\|1769975_1770512_-	DUF2017 domain-containing protein	NA	NA	NA	NA
WP_032802571.1\|1770596_1770896_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017308

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection