CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017651	Escherichia coli str. 'clone D i2', complete sequence	2 crisprs	cas14j,DinG,cas3,DEDDh,csa3,c2c9_V-U4,WYL	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017651_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017651_1

2571389-2571502

Orphan

Consensus_repeat	Method
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017651_1

>merge|NC_017651|1|2571389-2571502|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCACTGGATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGGTTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

>NC_017651|1|1|2571389-2571502|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CTGGATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGG
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017651.1\|WP_001104503.1\|2552330_2553980_-\|YfaQ-family-protein	unknown	unknown	gnl\|CDD\|227732
NC_017651.1\|WP_001209933.1\|2578147_2579407_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NC_017651.1\|WP_000140607.1\|2580786_2581713_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167
NC_017651.1\|WP_001297934.1\|2558518_2559142_-\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NC_017651.1\|WP_000990760.1\|2563749_2564472_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NC_017651.1\|WP_000536596.1\|2553980_2558495_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NC_017651.1\|WP_000786563.1\|2550291_2551476_+\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NC_017651.1\|WP_001075170.1\|2569051_2571337_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NC_017651.1\|WP_000992976.1\|2581753_2582557_-\|2-keto-3-deoxy-L-rhamnonate-aldolase	unknown	unknown	gnl\|CDD\|182257
NC_017651.1\|WP_001281253.1\|2560975_2563603_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NC_017651.1\|WP_000332036.1\|2571526_2572657_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NC_017651.1\|WP_000857226.1\|2576529_2578158_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NC_017651.1\|WP_000012318.1\|2559138_2560827_-\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NC_017651.1\|WP_000301034.1\|2572964_2573615_-\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NC_017651.1\|WP_016265893.1\|2564611_2568370_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NC_017651.1\|WP_000779093.1\|2573817_2574894_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NC_017651.1\|WP_001000377.1\|2579403_2580594_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NC_017651.1\|WP_001225880.1\|2551549_2552326_-\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NC_017651.1\|WP_000135040.1\|2572656_2572911_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NC_017651.1\|WP_000948732.1\|2574898_2576257_-\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889

Protein	Function_ID	Function_description	E-value
NC_017651.1\|WP_001104503.1\|2552330_2553980_-\|YfaQ-family-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.66557e-125
NC_017651.1\|WP_001209933.1\|2578147_2579407_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NC_017651.1\|WP_000140607.1\|2580786_2581713_+\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
NC_017651.1\|WP_001297934.1\|2558518_2559142_-\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	4.78627e-139
NC_017651.1\|WP_000990760.1\|2563749_2564472_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	3.80247e-169
NC_017651.1\|WP_000536596.1\|2553980_2558495_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NC_017651.1\|WP_000786563.1\|2550291_2551476_+\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NC_017651.1\|WP_001075170.1\|2569051_2571337_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NC_017651.1\|WP_000992976.1\|2581753_2582557_-\|2-keto-3-deoxy-L-rhamnonate-aldolase	gnl\|CDD\|182257	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional.	0
NC_017651.1\|WP_001281253.1\|2560975_2563603_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NC_017651.1\|WP_000332036.1\|2571526_2572657_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NC_017651.1\|WP_000857226.1\|2576529_2578158_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NC_017651.1\|WP_000012318.1\|2559138_2560827_-\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_017651.1\|WP_000301034.1\|2572964_2573615_-\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.02722e-157
NC_017651.1\|WP_016265893.1\|2564611_2568370_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NC_017651.1\|WP_000779093.1\|2573817_2574894_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NC_017651.1\|WP_001000377.1\|2579403_2580594_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NC_017651.1\|WP_001225880.1\|2551549_2552326_-\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	2.9978e-151
NC_017651.1\|WP_000135040.1\|2572656_2572911_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
NC_017651.1\|WP_000948732.1\|2574898_2576257_-\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0

>NC_017651.1|WP_001075170.1|2569051_2571337_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NC_017651.1|WP_016265893.1|2564611_2568370_-|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIISLRKEYLSLLPSMIASLFSANGAAAVIDSCQGYDIKANCQASRQSLSGNMQDWSIADGQWLIFSGMANNASGGAVFLQHSAEFTISPQNETGMTLFADNSVSGEYNNGGAIFAKENSTINLANVIFDSNVAGGYGGAIYSAGTNDTGAADLRVTNAVFHNNIANDGKGGAIYTINNDVYLSDDAFNNNQAYTSTSYSDGDGGAIDVTDNSTDNTHLSGKTIINNTSFTNNYAEGYGGAIYTSSTTSPYLIDISVDDNYDQNNGVMIDENNSASGYDHSATAAAGGFMYIGHSVAEFNIAADKTLVIGNTSNDGAIDSLAGTGVIVKEGAGELVLNADNNAFTGEMSIQNGEVTLGRSDELMNVGDTHCQSDPQDCFGLMVGSTVHSEYQAELNVGNTQQTFVHSLTGFANGILNIDAGGNVTVNQGGFSGSIQGEGQLTVAQDGSYLLTGAQSMALTGDIVVEDNAVLSLAGNQADLRAMQSDPQSIVLNGGVLDLSDFTTWDGDSSYNDGLQISGSGGTVIGSNDVVDISSGDDLHIGGSDASQNGVYVVINAGDQRVTLANNNGYLGNTQIASGTLEVSDNSQLGDTSYNRSVIFTDPQQHSEMDVTTDVDTRSATTGQGRNIEMRADGEIHVEDGVDTQWGGLMADSTGQQLDSVSTLTKSGGGTLELTASGTATSAVRVEDGTLKGEAENIIPYVSSLWVGEDGVFETGQNQDIRSIDATSGGDIDITDGTVLRLTQQDTNQALDASLFSGDGTLVNATDGVTLAGELNTNLETDSLTYLSDVTVNGNLTNTSGAISLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSASDQLVLNGNTAGNTAVVINPITGIGEPTSTGIKVVDFAADPAQFQNNAQFSLTGSGYVNMGAYDYTLVEDNNDWYLRSQEVNPTPPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYFNNLRAANQAFVMERRDHAGGDGQTLNLRVIGGRYHYTAVGQLAQHEDTSTVQLSGNLFSGHWGDDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGNQKQGAWLDSWLQYAWFNNDVSEQDDGVDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVSVTPTLDLNYYHDPHATEIEEDGSTISDDAAKQRGEIKVGITGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NC_017651.1|WP_000990760.1|2563749_2564472_+|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASHWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVVQTSLKERHMTGLHYNPITNTFKLGPGVDVNYMLHTQNK
>NC_017651.1|WP_001281253.1|2560975_2563603_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NC_017651.1|WP_000012318.1|2559138_2560827_-|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPKKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETIPVYQLRYNGNNVLMFATYQDKILAFSSSDMLFKDDQQDTEATAIASDLLSGKKRWETRFGLEARTAEKTPVRQRIVVSARLLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGGAGRCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQALNKTRPAMVDVIPTDGIVPLYINPQGMAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>NC_017651.1|WP_001297934.1|2558518_2559142_-|DUF1175-domain-containing-protein
MRHGLLVLICWLYCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKSNGLSNQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYIIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NC_017651.1|WP_000536596.1|2553980_2558495_-|alpha-2-macroglobulin-family-protein
MGTGLANADDSLPSSNYVPPAGGTFFLLADSSFSSSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPVEPQQGVKLEGASSNFISPQPGNIYIPLGKQEPGLYLVEAIVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKTGSEILWTDGLGVMTRGVTDGSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRKQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDDNGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGELVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKSLYMKWSMPTVYRMGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALTLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGVRFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTSDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEIMLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAGKQQGQLLEKARNEMGELAYMLPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAPGSEWTGMQVK
>NC_017651.1|WP_001104503.1|2552330_2553980_-|YfaQ-family-protein
MNWRRIVWLLALVTLPTLAEETPLQLALRGAQHDQLYQLSSSGVTKVSALPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIDVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWATGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVLVDLFARYPLKKVTEEKSTTAFKPGVLNGRYRVTFANGNHMTFVSHGETTLLTVKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRVTEGTLSWRHATAQAGQGERYDQILAFAYPDNNLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NC_017651.1|WP_001225880.1|2551549_2552326_-|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQTINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGAGAIRARLRLVLSWDTDNTDLDLHVVTPDGEYAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NC_017651.1|WP_000786563.1|2550291_2551476_+|acetyl-CoA-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSTIDLGATVIKAAIERAKIDSLHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKADSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESSALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKTLGFEPEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN
>NC_017651.1|WP_000332036.1|2571526_2572657_+|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>NC_017651.1|WP_000135040.1|2572656_2572911_+|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>NC_017651.1|WP_000301034.1|2572964_2573615_-|lipopolysaccharide-kinase-InaA
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKVEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NC_017651.1|WP_000779093.1|2573817_2574894_-|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNVLEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>NC_017651.1|WP_000948732.1|2574898_2576257_-|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>NC_017651.1|WP_000857226.1|2576529_2578158_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGINAEAIEPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEATLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NC_017651.1|WP_001209933.1|2578147_2579407_+|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYTLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLIIDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFVVLASGSFFSGGLVAERDGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDEALRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHVAQQIAQRAGGQQ
>NC_017651.1|WP_001000377.1|2579403_2580594_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NC_017651.1|WP_000140607.1|2580786_2581713_+|ISNCY-family-transposase
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSEGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGEASPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKERLMTIAERLRQEGHQIGWQEGKLEGLQEGMHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH
>NC_017651.1|WP_000992976.1|2581753_2582557_-|2-keto-3-deoxy-L-rhamnonate-aldolase
MNALLTNPFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASHPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTADQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRVKGSY

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Crispr_ID: NC_017651_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017651_2

4872874-4873013

Orphan

Consensus_repeat	Method
TGTGTAGGTCGGATAAGGCGTTCACGTCGCATCCGACAATAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017651_2

>merge|NC_017651|2|4872874-4873013|CRISPRCasFinder
TGTGTAGGTCGGATAAGGCGTTCACGTCGCATCCGACAATAACAGCCTTGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA

>NC_017651|2|2|4872874-4873013|CRISPRCasFinder
TGTGTAGGTCGGATAAGGCGTTCACGTCGCATCCGACAATAACA	GCCTTGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACGAGTTCAGTGC
TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017651.1\|WP_001304655.1\|4878730_4879729_-\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NC_017651.1\|WP_000998695.1\|4881179_4881944_-\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
NC_017651.1\|WP_000042801.1\|4877150_4878653_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NC_017651.1\|WP_000235828.1\|4861417_4862422_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
NC_017651.1\|WP_001128336.1\|4879795_4881115_-\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NC_017651.1\|WP_001528388.1\|4883782_4884802_-\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NC_017651.1\|WP_000428627.1\|4862445_4863378_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
NC_017651.1\|WP_001000676.1\|4868239_4869427_+\|DUF898-family-protein	unknown	unknown	gnl\|CDD\|226719
NC_017651.1\|WP_001298035.1\|4867543_4868047_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_017651.1\|WP_001197423.1\|4881967_4882999_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NC_017651.1\|WP_000584114.1\|4874807_4875908_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NC_017651.1\|WP_000416368.1\|4869473_4872329_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NC_017651.1\|WP_001295681.1\|4875907_4876990_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NC_017651.1\|WP_000397144.1\|4873029_4874541_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NC_017651.1\|WP_000012936.1\|4865783_4866788_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NC_017651.1\|WP_000002950.1\|4866949_4867366_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NC_017651.1\|WP_000786399.1\|4872328_4872772_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NC_017651.1\|WP_000635216.1\|4865286_4865739_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NC_017651.1\|WP_001346533.1\|4863388_4864609_-\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
NC_017651.1\|WP_000896740.1\|4883215_4883779_+\|gluconokinase	unknown	unknown	gnl\|CDD\|182097

Protein	Function_ID	Function_description	E-value
NC_017651.1\|WP_001304655.1\|4878730_4879729_-\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.9949e-108
NC_017651.1\|WP_000998695.1\|4881179_4881944_-\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
NC_017651.1\|WP_000042801.1\|4877150_4878653_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NC_017651.1\|WP_000235828.1\|4861417_4862422_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
NC_017651.1\|WP_001128336.1\|4879795_4881115_-\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NC_017651.1\|WP_001528388.1\|4883782_4884802_-\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	2.39242e-169
NC_017651.1\|WP_000428627.1\|4862445_4863378_-\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
NC_017651.1\|WP_001000676.1\|4868239_4869427_+\|DUF898-family-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	1.23576e-105
NC_017651.1\|WP_001298035.1\|4867543_4868047_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.51706e-18
NC_017651.1\|WP_001197423.1\|4881967_4882999_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NC_017651.1\|WP_000584114.1\|4874807_4875908_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NC_017651.1\|WP_000416368.1\|4869473_4872329_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NC_017651.1\|WP_001295681.1\|4875907_4876990_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NC_017651.1\|WP_000397144.1\|4873029_4874541_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NC_017651.1\|WP_000012936.1\|4865783_4866788_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NC_017651.1\|WP_000002950.1\|4866949_4867366_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	7.57352e-69
NC_017651.1\|WP_000786399.1\|4872328_4872772_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NC_017651.1\|WP_000635216.1\|4865286_4865739_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	4.82284e-65
NC_017651.1\|WP_001346533.1\|4863388_4864609_-\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NC_017651.1\|WP_000896740.1\|4883215_4883779_+\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	2.59086e-125

>NC_017651.1|WP_000786399.1|4872328_4872772_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NC_017651.1|WP_000416368.1|4869473_4872329_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDIYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIVDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NC_017651.1|WP_001000676.1|4868239_4869427_+|DUF898-family-protein
MNDVNIGKDNSRHSFVFTGKGGEYFLICLVNFLLTIITLGIYGPWALIKCRRYIYQHVTLKGQPFSYKGTGGAIFVSMLLIVVVYLLSISCFAGQHFALGLFLFALLICGIPCMAVKSLQYQANMTSLDDIRFGFNCSMMRAWWVMLGLPVLLALVFWFALYLIAQVTTSIGGLFFNLVALSLLSAIGLGVVHGITYSKWMPLLGNNATFGIHKFSIQVNVKECIKGCMLAILTMVPFIIVIGIMIAPVFQQLMMMTMLGGSDAGSEFVLQYYPQIMASYFLYFVAILVFASYLYVTLRNLFLNNLTLANGTIRFHSSVTAIGMLLRMLAVLMGSSITCGLAYPWLKMWMVSWIANNTHVQGDLDSLELTNDDKPQDSGSLMWISRGIMPYVPFI
>NC_017651.1|WP_001298035.1|4867543_4868047_-|GNAT-family-N-acetyltransferase
MNVVASPALRLRKLTVADNPAIAHVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLRKL
>NC_017651.1|WP_000002950.1|4866949_4867366_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGDDGDDEDFVDEDDDGIRH
>NC_017651.1|WP_000012936.1|4865783_4866788_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVAECSALAQKHGGKITLTEDIASGVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQVNSKMMALTGNSQVKFLHCLPAFHDEQTTLGKKMAAEFGLYGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLAK
>NC_017651.1|WP_000635216.1|4865286_4865739_+|YhcH/YjgK/YiaL-family-protein
MIVGNIHHLQSWLPEELREAIEYIKSHVSDETAKGKHAIDGDRLFYLISEDTTEPGELRRAEYHARYLDIQIVLKGQEGMTFSTQPAGVPETDWLADKDIAFIGQGIDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKLLKS
>NC_017651.1|WP_001346533.1|4863388_4864609_-|arginine-deiminase
MEKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFANTLRQQGIEVLLLTDLLTQTLDIPEAKSWLLETQISDYRLGPTFATDVRTWLAEMSHRDLARHLSGGLTYSEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPQFAGGEFIKYFGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGIEFLAQALFKHRQAERVIAVELPKHRSCMHLDTVMTHIDIDTFSVYPEVVRPDVNCWTLTPDGHGGLKRTQESTLLHAIEKALGIDQVRLITTGGDAFEAEREQWNDANNVLTLRPGVVVGYERNIWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLHRDGI
>NC_017651.1|WP_000428627.1|4862445_4863378_-|carbamate-kinase
MENKPTLVIALGGNALLKRGEPLEAEIQRKNIDLAAKTIAQLTQHWRVVLVHGNGPQVGLLALQNSAYAHVAPYPLDILGAESQGMIGYMLQQALKNQLPQREISVLLTQVEVDANDPAFSNPTKYIGPIYDHAQTQVLQAEKGWVFKADGHSFRRVVPSPQPKRIVERDAIQTLIAHDHLVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLASQIHADALLILTDADAVYLDWGKPTQRPLAQVTPELLNEMQFDAGSMGPKVTACAKFVSQCRGIAGIGSLADGPEILAGDKGTLIRLDTPHNHA
>NC_017651.1|WP_000235828.1|4861417_4862422_-|ornithine-carbamoyltransferase
MATSLKNRNFLKLLDYTPAEIQYLIDLAINLKAAKKSGNEKQTLVGKNIALIFEKSSTRTRCAFEVAAFDQGAQVTYIGPSGSQIGHKESMKDTARVLGRMYDGIEYRGYGQNIVEELGEFAGVPVWNGLTNEFHPTQILADLMTMLEHAPGKTLPELSFAYLGDARNNMGNSLMVGAAKMGMDIRLVAPKSFWPDEALVTQCREIASVTGARITLTEDVEEGVYDVDFLYTDVWVSMGEPKEAWAERVSLMAPYQINQQVITATRNPEVKFMHCLPAFHNEHTTVGREIEMAYGLKGLEVTEEVFESAHSIVFDEAENRMHTIKAVMVATLGD
>NC_017651.1|WP_000397144.1|4873029_4874541_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NC_017651.1|WP_000584114.1|4874807_4875908_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NC_017651.1|WP_001295681.1|4875907_4876990_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NC_017651.1|WP_000042801.1|4877150_4878653_-|DUF853-domain-containing-protein
MSKPLLIARTLDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAAEGTASEKLLARLKNIGVNDWQPHTNPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHLFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRPNPTFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLVNHSPVYGKYEDDVDRESAYEMLQKGFQASIEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NC_017651.1|WP_001304655.1|4878730_4879729_-|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSVHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLDKRVRRKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NC_017651.1|WP_001128336.1|4879795_4881115_-|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGQYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NC_017651.1|WP_000998695.1|4881179_4881944_-|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>NC_017651.1|WP_001197423.1|4881967_4882999_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSKLHEGQTVAINPSKPCGHCKYCIEHNENQCTEMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLKGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NC_017651.1|WP_000896740.1|4883215_4883779_+|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQDDEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NC_017651.1|WP_001528388.1|4883782_4884802_-|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQNKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLPVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12113-12164	10	0.808
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	272-323	10	0.808
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31252-31303	10	0.808
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4115-4166	11	0.788
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4114-4165	11	0.788
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4114-4165	11	0.788
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4114-4165	11	0.788
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	152-203	11	0.788
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208982-209033	12	0.769
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	44-95	12	0.769
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219476-219527	12	0.769
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	43-94	12	0.769
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18332-18383	12	0.769
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210310-210361	12	0.769
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	43-94	12	0.769
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191265-191316	12	0.769
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	43-94	12	0.769
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7393-7444	12	0.769
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84217-84268	12	0.769
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3373-3424	13	0.75
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3372-3423	13	0.75
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15000-15051	13	0.75
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3372-3423	13	0.75
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3372-3423	13	0.75
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	70-121	14	0.731
NC_017651_2	2.1\|4872918\|52\|NC_017651\|CRISPRCasFinder	4872918-4872969	52	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30159-30210	14	0.731

1. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 10, identity: 0.808

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc	CRISPR spacer
tcggtgcctgatgcgacgctggcgcgtcttatcaggcctacgagtcgcccgt	Protospacer
 *  ***************** ***********************.   .*.

2. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 10, identity: 0.808

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc-	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaa-ccgttacc	Protospacer
 *  *************************************.*. .*. *.*

3. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 10, identity: 0.808

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc--	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacag--ccgttgcca	Protospacer
 *  *************************************..  .*. ***

4. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc-	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaactt-gtgcc	Protospacer
    ***************** ************ ******.*..*. ****

5. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc-	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaactt-gtgcc	Protospacer
    ***************** ************ ******.*..*. ****

6. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc-	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaactt-gtgcc	Protospacer
    ***************** ************ ******.*..*. ****

7. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc-	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaactt-gtgcc	Protospacer
    ***************** ************ ******.*..*. ****

8. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc	CRISPR spacer
ttgaagcctgatgcgacgctgacgcgtcttatcaggcctacnagacccgagc	Protospacer
 .   **************** ******************* ** .* * **

9. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******************    .** **.

10. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .  ***************** ************ ******.*.*.. **.*

11. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******************    .** **.

12. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .  ***************** ************ ******.*.*.. **.*

13. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.769

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .  ***************** ************ ******.*.*.. **.*

14. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******************    .** **.

15. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .  ***************** ************ ******.*.*.. **.*

16. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******************    .** **.

17. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .  ***************** ************ ******.*.*.. **.*

18. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 12, identity: 0.769

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc---	CRISPR spacer
cggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaa---actgcact	Protospacer
    ***************** ************ ******.*.   * ***

19. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 12, identity: 0.769

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc---	CRISPR spacer
cggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaa---actgcact	Protospacer
    ***************** ************ ******.*.   * ***

20. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
    ***************** ************ *********..*.  .

21. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
    ***************** ************ *********..*.  .

22. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
    ***************** ************ *********..*.  .

23. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
    ***************** ************ *********..*.  .

24. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
    ***************** ************ *********..*.  .

25. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 14, identity: 0.731

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc	CRISPR spacer
ccgatgcctgatgcgacgctgacgcgtcttatcatgcctacggacctgaacc	Protospacer
 *  ***************** ************ *******.......  *

26. spacer 2.1|4872918|52|NC_017651|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 14, identity: 0.731

gccttgcctgatgcgacgctgtcgcgtcttatcaggcctacgagttcagtgc	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaatctgcaccc	Protospacer
 .  ***************** ************ ******.* .*  .. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

249093 : 302518

uncultured_Caudovirales_phage(25.0%)

protease,head,capsid,terminase,integrase

attL 254738:254753|attR 300181:300196

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001352457.1\|249093_250323_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.3e-132	55.1
WP_001352456.1\|250690_250879_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	9.1e-14	66.0
WP_001352454.1\|252141_252348_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000336174.1\|252337_252574_+	hypothetical protein	NA	NA	NA	NA
WP_001063222.1\|252566_252779_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	7.9e-06	44.1
WP_001244628.1\|252768_252987_+	hypothetical protein	NA	NA	NA	NA
WP_000810838.1\|252993_253293_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000761761.1\|253289_254705_+	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	6.9e-114	58.2
254738:254753	attL	NA	NA	NA	NA
WP_000197301.1\|254906_255158_+	hypothetical protein	NA	NA	NA	NA
WP_000126681.1\|255154_255577_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000796961.1\|255992_256199_+	hypothetical protein	NA	NA	NA	NA
WP_000268554.1\|256198_257254_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	4.6e-70	43.3
WP_000380882.1\|257265_257601_+\|head	head decoration protein	NA	NA	NA	NA
WP_000224592.1\|257613_258027_+	hypothetical protein	NA	NA	NA	NA
WP_000835284.1\|258233_258776_+\|terminase	terminase small subunit	O64316	Escherichia_phage	2.9e-36	48.1
WP_000133418.1\|258849_259131_+	hypothetical protein	NA	NA	NA	NA
WP_000854730.1\|261946_262324_-	toxin	NA	NA	NA	NA
WP_001285481.1\|262370_262745_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000086760.1\|262794_263439_-	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	6.5e-27	33.6
WP_000692315.1\|263457_263679_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	8.5e-11	45.8
WP_001186170.1\|263741_264218_-	RadC family protein	NA	NA	NA	NA
WP_000855076.1\|264233_264707_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	7.4e-12	33.1
WP_001164966.1\|264800_265046_-	hypothetical protein	NA	NA	NA	NA
WP_001234359.1\|265045_265867_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	6.1e-46	38.5
WP_001213776.1\|265966_266200_-	DUF905 family protein	NA	NA	NA	NA
WP_000682723.1\|266317_266770_-	hypothetical protein	NA	NA	NA	NA
WP_000680181.1\|267204_267834_-	hypothetical protein	NA	NA	NA	NA
WP_000238685.1\|267889_268396_-	hypothetical protein	NA	NA	NA	NA
WP_000102646.1\|268485_269556_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_000203555.1\|269552_270458_-	chemotaxis protein	NA	NA	NA	NA
WP_000544741.1\|270454_272851_-	dynamin family protein	NA	NA	NA	NA
WP_001069809.1\|273068_273503_-	hypothetical protein	NA	NA	NA	NA
WP_001313577.1\|273724_274825_-	hypothetical protein	NA	NA	NA	NA
WP_001305361.1\|275223_275826_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E036	Clostridioides_phage	1.8e-07	33.3
WP_000459982.1\|276149_276791_+	hypothetical protein	NA	NA	NA	NA
WP_001305362.1\|276908_277718_-	hypothetical protein	NA	NA	NA	NA
WP_000856947.1\|278200_280366_+	TonB-dependent receptor	NA	NA	NA	NA
WP_000778018.1\|280376_281366_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000217077.1\|281384_282443_+	iron ABC transporter permease	NA	NA	NA	NA
WP_000016205.1\|282439_283207_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-13	27.9
WP_001163787.1\|283260_283518_+	hypothetical protein	NA	NA	NA	NA
WP_000782654.1\|286050_286659_-	hypothetical protein	NA	NA	NA	NA
WP_001305352.1\|286746_286953_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_001367564.1\|287336_288128_-	hypothetical protein	NA	NA	NA	NA
WP_072146520.1\|289193_289343_+	hemolysin activation protein	NA	NA	NA	NA
WP_000860849.1\|289574_290174_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_000270955.1\|290545_290929_+	hypothetical protein	NA	NA	NA	NA
WP_001013326.1\|290925_291351_+	hypothetical protein	NA	NA	NA	NA
WP_085458388.1\|291981_292389_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_001327840.1\|292493_292709_+	hypothetical protein	NA	NA	NA	NA
WP_001305346.1\|292776_292974_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000684812.1\|293293_293932_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_001051732.1\|294200_295373_+	oligogalacturonate lyase	NA	NA	NA	NA
WP_000345753.1\|295402_296203_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_000497518.1\|296257_296581_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000134160.1\|296946_298461_+	MFS transporter	NA	NA	NA	NA
WP_001032962.1\|298462_300697_+	exopolygalacturonate lyase	NA	NA	NA	NA
300181:300196	attR	NA	NA	NA	NA
WP_001305344.1\|300804_301770_+	hypothetical protein	NA	NA	NA	NA
WP_001327842.1\|302089_302518_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

1289481 : 1390580

139

Enterobacteria_phage(47.41%)

lysis,portal,protease,head,capsid,tRNA,tail,holin,integrase,terminase

attL 1327198:1327215|attR 1393327:1393344

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000074984.1\|1289481_1290600_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	5.9e-84	44.2
WP_000003742.1\|1290568_1290838_-	excisionase	NA	NA	NA	NA
WP_000102136.1\|1290899_1293341_-	exonuclease	V5UQJ3	Shigella_phage	3.1e-114	46.9
WP_001070255.1\|1293434_1293626_-	DUF1482 family protein	NA	NA	NA	NA
WP_000854564.1\|1293622_1293811_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001171946.1\|1294379_1294598_-	hypothetical protein	NA	NA	NA	NA
WP_000379575.1\|1294757_1294913_-	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2
WP_000362155.1\|1295178_1295598_-	hypothetical protein	K7PK07	Enterobacteria_phage	8.8e-25	65.1
WP_000391949.1\|1295698_1295980_+	helix-turn-helix domain-containing protein	K7PHA1	Enterobacteria_phage	8.5e-24	72.6
WP_000693837.1\|1295963_1296389_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262379.1\|1296460_1297525_+	hypothetical protein	A0A088CD36	Shigella_phage	7.9e-62	64.6
WP_001151225.1\|1297565_1297988_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	3.3e-64	91.4
WP_000403785.1\|1298045_1298402_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.8e-58	99.2
WP_001224662.1\|1298495_1298678_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.4e-27	100.0
WP_000753059.1\|1298670_1298847_+	hypothetical protein	A0A2R2X2A8	Escherichia_phage	9.7e-26	93.1
WP_000813254.1\|1299768_1299924_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_001429486.1\|1300382_1300661_+	hypothetical protein	I6PCV7	Cronobacter_phage	4.3e-12	48.4
WP_001265034.1\|1300662_1301712_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.9e-109	54.6
WP_000904092.1\|1301724_1302081_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.8e-34	61.8
WP_000762890.1\|1302095_1302917_+	antitermination protein	K7P7B9	Enterobacteria_phage	6.1e-78	58.6
WP_000562553.1\|1303809_1303941_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	3.7e-06	100.0
WP_000871291.1\|1304221_1304557_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_000874243.1\|1304817_1305006_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	7.2e-27	95.2
WP_001327246.1\|1305002_1305164_+	hypothetical protein	Q08JA2	Stx2-converting_phage	2.0e-14	89.1
WP_000372595.1\|1305313_1305529_+\|holin	class II holin family protein	A0A2R2Z340	Escherichia_phage	3.4e-33	98.6
WP_000193296.1\|1305533_1305878_+	YdfR family protein	K7PGU6	Enterobacteria_phage	7.0e-36	92.9
WP_000370546.1\|1305843_1306116_-	hypothetical protein	NA	NA	NA	NA
WP_000992105.1\|1306221_1306755_+	lysozyme	K7PLY1	Enterobacteria_phage	4.8e-100	96.0
WP_001327248.1\|1306751_1307219_+\|lysis	lysis protein	Q9AZ06	Salmonella_phage	5.0e-69	89.7
WP_001139682.1\|1307206_1307359_+	hypothetical protein	Q716B2	Shigella_phage	2.1e-21	100.0
WP_001059340.1\|1307561_1308086_+	Rha family transcriptional regulator	G8C7W4	Escherichia_phage	2.9e-86	93.6
WP_001537735.1\|1308388_1308799_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.7e-55	77.8
WP_000105081.1\|1308856_1309090_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	4.3e-21	94.4
WP_000235436.1\|1309484_1309994_+\|terminase	terminase small subunit	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_001537733.1\|1309965_1311894_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	9.4e-263	66.5
WP_000258993.1\|1311877_1312084_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
WP_001537684.1\|1312080_1313673_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	2.9e-185	61.3
WP_001253953.1\|1313662_1315168_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.7e-100	53.5
WP_000256835.1\|1315204_1315552_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.9e-21	55.9
WP_000522583.1\|1315609_1316638_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	8.6e-114	61.9
WP_000201498.1\|1316689_1317073_+	hypothetical protein	NA	NA	NA	NA
WP_001204571.1\|1317065_1317419_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.1e-41	70.1
WP_000974995.1\|1317434_1317968_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.2e-55	64.1
WP_000683079.1\|1317964_1318360_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_000235037.1\|1318367_1319114_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	8.7e-124	93.4
WP_001299690.1\|1319132_1319564_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
WP_000533402.1\|1319590_1320004_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000082402.1\|1319984_1322546_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	90.0
WP_000847298.1\|1322542_1322872_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_001327694.1\|1322871_1323570_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	7.6e-130	97.0
WP_001576728.1\|1323575_1324319_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	8.3e-143	93.4
WP_072258937.1\|1324264_1324897_+\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	1.7e-96	92.3
WP_000514735.1\|1325240_1328933_+	DUF1983 domain-containing protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	85.8
1327198:1327215	attL	NA	NA	NA	NA
WP_001228261.1\|1329000_1329600_+	Ail/Lom family protein	Q9EV15	Enterobacteria_phage	4.4e-102	92.5
WP_000216560.1\|1329751_1331815_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	3.7e-148	62.7
WP_001204582.1\|1331811_1332090_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	1.0e-21	50.5
WP_000355700.1\|1332099_1332393_+	hypothetical protein	NA	NA	NA	NA
WP_071586406.1\|1332432_1332531_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.2e-06	78.1
WP_000742376.1\|1332585_1333242_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937496.1\|1333310_1333577_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.3e-18	78.3
WP_000799413.1\|1333808_1334672_-	spermidine/putrescine ABC transporter permease PotB	NA	NA	NA	NA
WP_000531594.1\|1334655_1335792_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
WP_000359446.1\|1336041_1337268_+	peptidase T	NA	NA	NA	NA
WP_001295435.1\|1337316_1338438_-	[50S ribosomal protein L16]-arginine 3-hydroxylase	NA	NA	NA	NA
WP_000734671.1\|1338513_1339974_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|1339973_1340645_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423742.1\|1340814_1342185_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	44.9
WP_001295971.1\|1342188_1342830_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001443105.1\|1342865_1343972_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476093.1\|1344025_1344487_-	phosphatase NudJ	NA	NA	NA	NA
WP_001248695.1\|1344496_1345150_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444487.1\|1345321_1346572_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_000741334.1\|1346685_1347828_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z02	Phage_21	1.1e-205	99.7
WP_000088653.1\|1347817_1348054_-	excisionase	NA	NA	NA	NA
WP_000490215.1\|1348193_1348433_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	8.8e-38	93.7
WP_001304460.1\|1348458_1348743_-	ASCH domain-containing protein	A0A2D1GLL3	Escherichia_phage	4.0e-45	89.4
WP_000208010.1\|1348735_1349476_-	DUF550 domain-containing protein	K7PGV7	Enterobacterial_phage	6.5e-47	67.1
WP_000951713.1\|1349472_1349682_-	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	1.3e-32	91.2
WP_001327280.1\|1349683_1350217_-	hypothetical protein	Q1MVF7	Enterobacteria_phage	2.5e-64	82.1
WP_001518554.1\|1350234_1350489_-	hypothetical protein	A5LH60	Enterobacteria_phage	1.7e-34	91.1
WP_001289890.1\|1350490_1351255_-	ead/Ea22-like family protein	K7PKG8	Enterobacteria_phage	3.6e-56	94.8
WP_000763378.1\|1351251_1351473_-	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	8.4e-35	97.3
WP_000188870.1\|1351571_1351787_-	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.0e-32	100.0
WP_000548537.1\|1351863_1352055_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_000149544.1\|1352027_1352210_-	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
WP_000186790.1\|1352206_1352887_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	5.1e-131	99.1
WP_000100847.1\|1352883_1353669_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995434.1\|1353674_1353971_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.1e-48	98.0
WP_000372923.1\|1354046_1354190_-	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	2.7e-18	97.9
WP_001198860.1\|1354158_1354323_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	A0A0N6WES3	Escherichia_phage	1.4e-26	100.0
WP_000065374.1\|1354395_1354764_-	DUF2528 family protein	M1FPD2	Enterobacteria_phage	2.0e-65	100.0
WP_000213979.1\|1354946_1355147_-	antirestriction Ral family protein	A0A0K2FJE6	Enterobacteria_phage	7.1e-33	98.5
WP_001066176.1\|1355360_1355942_+	superinfection exclusion B family protein	K7P6T7	Enterobacteria_phage	5.2e-92	92.2
WP_000088199.1\|1355958_1356231_-	hypothetical protein	A0A0N7C217	Escherichia_phage	2.8e-40	98.9
WP_000438342.1\|1356208_1356391_-	hypothetical protein	A0A0N7C057	Escherichia_phage	1.1e-27	98.3
WP_000968518.1\|1356667_1357420_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_001062368.1\|1357416_1357974_-	hypothetical protein	NA	NA	NA	NA
WP_001302016.1\|1358013_1358709_-	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	8.6e-134	100.0
WP_000067727.1\|1358784_1359000_+	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_000442609.1\|1359141_1359438_+	hypothetical protein	G9L678	Escherichia_phage	2.2e-46	94.9
WP_000185431.1\|1359470_1360370_+	replication protein	K7P7F0	Enterobacteria_phage	3.5e-172	99.0
WP_000788872.1\|1360366_1361068_+	Replication protein 14	A0A0P0ZD31	Stx2-converting_phage	2.9e-129	99.6
WP_000145927.1\|1361064_1361355_+	protein ren	O48423	Enterobacteria_phage	2.8e-46	97.9
WP_000736913.1\|1361428_1361869_+	recombination protein NinB	M1FPM8	Enterobacteria_phage	1.2e-80	100.0
WP_000153286.1\|1361865_1362393_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	4.7e-100	99.4
WP_001254243.1\|1362389_1362566_+	NinE family protein	A5VW90	Enterobacteria_phage	3.3e-26	96.6
WP_000386643.1\|1362568_1362910_+	DUF2591 family protein	Q76H72	Enterobacteria_phage	1.6e-61	96.5
WP_001099692.1\|1363116_1363479_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	9.5e-60	95.7
WP_000971053.1\|1363475_1363616_+	YlcG family protein	K7PHH3	Enterobacteria_phage	3.6e-07	67.4
WP_001204776.1\|1363701_1364085_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	1.5e-55	83.3
WP_000737269.1\|1364273_1365356_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.3e-165	79.8
WP_000839596.1\|1365944_1366160_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135277.1\|1366159_1366657_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
WP_001228695.1\|1366873_1367056_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001298464.1\|1367146_1367440_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	7.0e-45	92.8
WP_000830178.1\|1367920_1368247_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_000881610.1\|1368453_1368636_+	hypothetical protein	NA	NA	NA	NA
WP_000867568.1\|1369198_1369747_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
WP_024256144.1\|1369718_1371647_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	2.8e-259	66.6
WP_000258997.1\|1371630_1371837_+\|head	phage head-stabilizing protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
WP_000831761.1\|1371833_1373426_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.2e-184	60.9
WP_001253912.1\|1373415_1374921_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.6e-100	53.7
WP_000256840.1\|1374957_1375305_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_000522648.1\|1375362_1376391_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	5.9e-115	61.6
WP_000201530.1\|1376442_1376817_+	hypothetical protein	NA	NA	NA	NA
WP_001204540.1\|1376809_1377163_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	3.4e-38	65.0
WP_000975062.1\|1377174_1377753_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.9e-79	99.0
WP_000683101.1\|1377749_1378145_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	5.5e-69	97.7
WP_001351266.1\|1378152_1378893_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	3.7e-127	95.9
WP_000479129.1\|1378908_1379331_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.7e-66	91.4
WP_000459474.1\|1379312_1379747_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	9.0e-57	90.0
WP_000840269.1\|1379739_1382301_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	94.5
WP_000847405.1\|1382297_1382627_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	5.4e-54	94.5
WP_001152660.1\|1382626_1383325_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	4.0e-131	97.8
WP_000140699.1\|1383330_1384074_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.1e-147	97.2
WP_000090917.1\|1384010_1384643_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	5.9e-97	100.0
WP_000515327.1\|1384703_1388186_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.5
WP_000290543.1\|1388244_1390305_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M194	Enterobacteria_phage	2.0e-125	53.4
WP_000654167.1\|1390301_1390580_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	7.6e-25	56.5
1393327:1393344	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2437001 : 2446446

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001305166.1\|2437001_2438138_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	3.8e-163	97.7
WP_001327380.1\|2438134_2440138_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.1
WP_001296231.1\|2440262_2440724_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001295430.1\|2440764_2441235_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|2441281_2442001_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_024256150.1\|2441997_2443683_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.1e-303	99.5
WP_001240404.1\|2443904_2444636_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.2e-111	99.0
WP_001216963.1\|2444695_2444803_+	protein YohO	NA	NA	NA	NA
WP_000783150.1\|2444783_2445515_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569381.1\|2445519_2446446_-	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	27.3

DBSCAN-SWA_4

2683048 : 2695987

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000368121.1\|2683048_2683981_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	4.6e-167	99.0
WP_001537815.1\|2684568_2685087_-	OmpH family outer membrane protein	A0A2L1IV11	Escherichia_phage	2.1e-84	99.4
WP_014640419.1\|2685146_2693078_-	phase-variable autotransporter adhesin UpaE	A0A2L1IV38	Escherichia_phage	0.0e+00	99.3
WP_000243056.1\|2693102_2693723_-	LuxR family transcriptional regulator	A0A2L1IV08	Escherichia_phage	5.9e-118	99.0
WP_001181152.1\|2694040_2694670_-	tyrosine-type DNA invertase IpuA	A0A2L1IV36	Escherichia_phage	1.6e-118	99.0
WP_001224626.1\|2695417_2695987_+	tyrosine-type DNA invertase IpuB	A0A2L1IV36	Escherichia_phage	7.0e-49	52.2

DBSCAN-SWA_5

3026809 : 3033949

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000103863.1\|3026809_3029371_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8
WP_001141289.1\|3029476_3030133_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	2.8e-49	45.2
WP_001298167.1\|3030183_3030951_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.2e-69	57.4
WP_000847998.1\|3031146_3032055_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	5.1e-118	76.9
WP_000590418.1\|3032051_3033314_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_001279001.1\|3033310_3033949_+	aldolase	A0A077SK32	Escherichia_phage	2.8e-83	75.0

DBSCAN-SWA_6

3264103 : 3318739

Staphylococcus_phage(40.0%)

lysis,protease,transposase,tRNA,integrase

attL 3284041:3284056|attR 3318922:3318937

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001327406.1\|3264103_3264862_+\|protease	metalloprotease LoiP	NA	NA	NA	NA
WP_000105562.1\|3265065_3265986_-	agmatinase	NA	NA	NA	NA
WP_000758911.1\|3266121_3266853_-	hypothetical protein	NA	NA	NA	NA
WP_001295380.1\|3266998_3268975_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_001297406.1\|3268983_3269115_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_001331575.1\|3269250_3269466_+	hypothetical protein	NA	NA	NA	NA
WP_001062128.1\|3269769_3270924_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.0e-128	63.2
WP_001112301.1\|3271359_3272754_+	galactose/proton symporter	NA	NA	NA	NA
WP_000858396.1\|3272830_3273328_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_001327408.1\|3273422_3274130_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001222509.1\|3274209_3274941_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593261.1\|3274953_3275904_+	glutathione synthase	NA	NA	NA	NA
WP_001053178.1\|3276012_3276576_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017106.1\|3276575_3276992_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001327409.1\|3277165_3278146_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997795.1\|3278163_3278868_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094831.1\|3278885_3279452_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277222.1\|3279448_3279739_+	YggU family protein	NA	NA	NA	NA
WP_001174738.1\|3279746_3280340_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000239981.1\|3280332_3281469_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000745192.1\|3281537_3282545_-	DUF1202 family protein	NA	NA	NA	NA
WP_000394106.1\|3282661_3283708_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984796.1\|3283883_3284603_-	DUF2884 domain-containing protein	NA	NA	NA	NA
3284041:3284056	attL	NA	NA	NA	NA
WP_001107565.1\|3284786_3285113_-	YggL family protein	NA	NA	NA	NA
WP_000786915.1\|3285112_3285832_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001327411.1\|3285992_3287045_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091699.1\|3287072_3287348_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000760323.1\|3287412_3288492_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001327414.1\|3288693_3289950_+	nucleoside permease NupG	NA	NA	NA	NA
WP_000839794.1\|3289998_3292134_-	ornithine decarboxylase	NA	NA	NA	NA
WP_000234491.1\|3292532_3293240_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001218869.1\|3293618_3294884_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
WP_000147015.1\|3295139_3296183_+	hypothetical protein	NA	NA	NA	NA
WP_001774069.1\|3297876_3298428_-	HTH-type transcriptional regulator PapX	NA	NA	NA	NA
WP_000006213.1\|3300919_3301153_+	major pilus subunit operon transcriptional regulator PapI	NA	NA	NA	NA
WP_001513409.1\|3303020_3303134_-\|lysis	lysis protein	NA	NA	NA	NA
WP_001110186.1\|3304967_3305228_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_000109147.1\|3305269_3305830_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001296373.1\|3305869_3306298_+	DUF417 family protein	NA	NA	NA	NA
WP_103103189.1\|3307006_3308234_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	7.2e-168	94.4
WP_001223344.1\|3308734_3310825_+	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_001296383.1\|3311686_3311929_+	hypothetical protein	NA	NA	NA	NA
WP_001529396.1\|3312219_3312588_+	hypothetical protein	NA	NA	NA	NA
WP_000266542.1\|3312591_3312807_+	hypothetical protein	NA	NA	NA	NA
WP_001254932.1\|3317587_3318739_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
3318922:3318937	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017651

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection