CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016147	Pseudoxanthomonas spadix BD-a59, complete sequence	13 crisprs	RT,WYL,DinG,Cas9_archaeal,csa3,cas3,DEDDh,cas5,cas8c,cas7,cas4,cas1,cas2	4	24	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016147_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_1

128594-128727

Orphan

Consensus_repeat	Method
CCTTGGCCGGCCACGTGCACGGCAAGCGGCCGGACGTCCCAGCGCACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016147_1

>merge|NC_016147|1|128594-128727|CRISPRCasFinder
CCTTGGCCGGCCACGTGCACGGCAAGCGGCCGGACGTCCCAGCGCACGGCAAAAGGGGACGGAGGCAATTAAACCGCCTGCGGCCCCCTTGGCCGGCCACGTGCACGGCAAGCGGCCGGGCGTCCCAGCGCACG

>NC_016147|1|1|128594-128727|CRISPRCasFinder
CCTTGGCCGGCCACGTGCACGGCAAGCGGCCGGACGTCCCAGCGCACG	GCAAAAGGGGACGGAGGCAATTAAACCGCCTGCGGCCC
CCTTGGCCGGCCACGTGCACGGCAAGCGGCCGGGCGTCCCAGCGCACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_014159133.1\|115518_117567_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NC_016147.2\|WP_014159148.1\|133218_133650_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_016147.2\|WP_014159145.1\|130519_131299_+\|3-oxoadipate-enol-lactonase	unknown	unknown	gnl\|CDD\|131480
NC_016147.2\|WP_014159147.1\|132234_133065_-\|nitrate-reductase	unknown	unknown	gnl\|CDD\|224747
NC_016147.2\|WP_014159144.1\|129571_130372_+\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235036
NC_016147.2\|WP_014159137.1\|123958_126328_+\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NC_016147.2\|WP_014159151.1\|136166_136562_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NC_016147.2\|WP_014159140.1\|127934_128219_-\|BrnA-antitoxin-family-protein	unknown	unknown	gnl\|CDD\|373040
NC_016147.2\|WP_122231072.1\|131412_131712_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NC_016147.2\|WP_014159141.1\|128202_128472_-\|BrnT-family-toxin	unknown	unknown	gnl\|CDD\|367913
NC_016147.2\|WP_043290251.1\|121655_122324_+\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
NC_016147.2\|WP_014159150.1\|135246_136170_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_016147.2\|WP_014159149.1\|133660_135250_-\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014159136.1\|122623_123856_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NC_016147.2\|WP_052299831.1\|117683_121409_+\|translocation/assembly-module-TamB-domain-containing-protein	unknown	unknown	gnl\|CDD\|225463
NC_016147.2\|WP_043290253.1\|126560_127265_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NC_016147.2\|WP_014159152.1\|136838_137546_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NC_016147.2\|WP_014159153.1\|137611_138652_-\|class-1-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236458
NC_016147.2\|WP_014159139.1\|127565_127724_+\|helix-hairpin-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225094
NC_016147.2\|WP_014159132.1\|113341_115444_+\|glycine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234925

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_014159133.1\|115518_117567_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	3.12905e-112
NC_016147.2\|WP_014159148.1\|133218_133650_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.47436e-27
NC_016147.2\|WP_014159145.1\|130519_131299_+\|3-oxoadipate-enol-lactonase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	6.40595e-109
NC_016147.2\|WP_014159147.1\|132234_133065_-\|nitrate-reductase	gnl\|CDD\|224747	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism].	8.5997e-75
NC_016147.2\|WP_014159144.1\|129571_130372_+\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|235036	PRK02412, aroD, type I 3-dehydroquinate dehydratase.	1.61565e-101
NC_016147.2\|WP_014159137.1\|123958_126328_+\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NC_016147.2\|WP_014159151.1\|136166_136562_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	6.27067e-28
NC_016147.2\|WP_014159140.1\|127934_128219_-\|BrnA-antitoxin-family-protein	gnl\|CDD\|373040	pfam14384, BrnA_antitoxin, BrnA antitoxin of type II toxin-antitoxin system. BrnA is family of antitoxins that neutralizes the toxin BrnT, pfam04365. It consists of 3 alpha-helices and a C-terminal ribbon-helix-helix DNA binding domain. As in other toxin-antitoxin systems, BrnA negatively autoregulates the brnTA operon and has higher affinity for the DNA operator when complexed with BrnT. It dimerizes with two molecules of its toxin BrnT.	3.25341e-13
NC_016147.2\|WP_122231072.1\|131412_131712_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	2.63617e-16
NC_016147.2\|WP_014159141.1\|128202_128472_-\|BrnT-family-toxin	gnl\|CDD\|367913	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system. BrnT is a ribonuclease toxin of a type II toxin-antitoxin system that exhibits a RelE-like fold. The antitoxin that neutralizes this toxin is pfam14384. BrnT is found in bacteria, archaea, bacteriophage, and plasmids. BrnT-BrnA forms a 2:2 tetrameric complex and autoregulates its own expression, which is induced by a number of different environmental stresses. Expression of BrnT alone results in cessation of bacterial growth which can be rescued after subsequent expression of BrnA.	2.53839e-26
NC_016147.2\|WP_043290251.1\|121655_122324_+\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	4.53895e-32
NC_016147.2\|WP_014159150.1\|135246_136170_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.38019e-74
NC_016147.2\|WP_014159136.1\|122623_123856_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.30376e-102
NC_016147.2\|WP_052299831.1\|117683_121409_+\|translocation/assembly-module-TamB-domain-containing-protein	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	1.51698e-144
NC_016147.2\|WP_043290253.1\|126560_127265_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.84843e-19
NC_016147.2\|WP_014159152.1\|136838_137546_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	6.40557e-09
NC_016147.2\|WP_014159153.1\|137611_138652_-\|class-1-fructose-bisphosphatase	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	0
NC_016147.2\|WP_014159139.1\|127565_127724_+\|helix-hairpin-helix-domain-containing-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	1.098e-17
NC_016147.2\|WP_014159132.1\|113341_115444_+\|glycine--tRNA-ligase-subunit-beta	gnl\|CDD\|234925	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated.	0

>NC_016147.2|WP_014159141.1|128202_128472_-|BrnT-family-toxin
MEIEFDPAKNERNIAERGISFDQASQFDFSTARIVEDTRHNYPERRFQALGLLADRLYMLVFAPIAGGIRVISLRKANKREVRRYEQTP
>NC_016147.2|WP_014159140.1|127934_128219_-|BrnA-antitoxin-family-protein
MSKRPDPEMIDTDNPEWTNETFARARPAAEVLREVFPTELAAEMLKPKRTRGPGKRPSKALTTLRLPPETLERWKASGPGWQTRMADLLSKRAP
>NC_016147.2|WP_014159139.1|127565_127724_+|helix-hairpin-helix-domain-containing-protein
MSSRGQDARAEDCVNAVGVDVNTVSAALVTRVSGLSLTVAENIVIYRDQHGH
>NC_016147.2|WP_043290253.1|126560_127265_+|transposase
MARLPRIALPGIPQHVVQRGNNRLPCFLDDRDRLRYLQLLRDALHRSGCALHAYVLMDNHVHLLLTPPTVQATGRLMQRLGRHYVALFNGRHGRTGTLWEGRYKACLIDSEDHLLRCYRYIELNPVRAAITDDPARYRWSSCLANLGLRPHSALQPHPSFLALGSDTATRANAYRALLDAALTPEDLAAIRATLQQQRALGTSAFQAMVQAKTQRFAGVRPAHRPRKSAATGDK
>NC_016147.2|WP_014159137.1|123958_126328_+|RNA-binding-transcriptional-accessory-protein
MAALPAALARQIAQTIAEEIGAQAPQALAAIALLDEGATVPFIARYRKEVTGGLDDTQLRTLETRLAYLRELEERRAAILSSIEEQGKLTDALRGELLAADSKSRLEDLYLPYKPRRRTRAQIAREAGLEPLADGLLQDPTRVPEDFAAGFVDADKGVADARAALEGARAILIERWGEDAALLGQLRSWLESEGVLRARVIDGKQEAGAKYRDYFDHSEALSKIPSHRLLALFRARREEVIQLELEPGADPEAGNAYAEGRIALAAGIAAQGRAADAWLSQACRLAWRAKLHLHLMLDLFNQAREKAEGEAITVFGDNLKDLLLAAPAGPHAVLGLDPGIRTGCKIAVVDATGKLVATDAIYPHEPKRQWEQSLHTLKRLCAQHEVALIAIGNGTASRETDRLAAEVIKACNNPKLQKIVVSEAGASVYSASETAAREFPDLDVSIRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVDQFRLARALDARVEDCVNAVGVDVNTASAALLTRVSGLSSTVAENIVGYRDQHGAFRSRKELLKVPRLGEKTFEQCAGFLRIADGEQPLDASAVHPEAYPVVERILGQANGRGIKQIIGDTAFLRSLKAERLTDEKFGLPTVRDILKELEKPGRDPRPEFKAARFAEGVEDIKDLREGMILEGVVSNVAAFGAFVDIGVHQDGLVHISALSDRYVKDPRDVVKAGDIVKVKVLEVDVARKRIALTRRLDDVPGAPPAREERSAGPRGNSNPGNARGARPGSGGNARPPRPTAPPADNALAAALAKARGR
>NC_016147.2|WP_014159136.1|122623_123856_+|MFS-transporter
MSTTTTTTTTTPPSLAAAVTRRPVAVGILAAITGSHLVNDMMQSLILALYPILKGQFQLSFAQVGLITLTYQLTASLFQPLIGLRTDRRPAPYSLPMGMASTLCGLLLLAYAPSFVLVLAAAMLVGIGSAIFHPESSRIARLASGGRHGLSQSVFQVGGNTGTAIGPLIAAAVIVPNGRTSVAWFAGAALIGIGLLSYVGRWYQQHLASAARAPRPAAAPGIAPLPPRTVAWVVAILLVLIFSKYFYIAGLSSYYTFYLIQKFQVSVQSAQLHLFGFLLASAVGTLIGGPVGDRIGRKPVIWASILGVAPFALALPYASLGWTTVLTMIIGLVLSSAFSAILVYAQELMPNRIGTVSGLFFGFAFGMGGLGAAVLGVLADHTSILWVYQVISFLPLLGIVAALLPSRRHG
>NC_016147.2|WP_043290251.1|121655_122324_+|DUF1275-domain-containing-protein
MISRLPRWVWTGAWVLAAIAGMVNVVGLLGFEHQAISHLTGNTSLLGEALAAHDLAGVLHFALLIGAFVAGSTLSGFLIQDSTLQLGRRYGVALLLVSLLLFASVPLLQLNSAYGMYAAACACGLQNAMVSTYSGAVVRTTHVSGMFTDLGIFLGHALRGLPVDIRRLTLCLLVISGFLCGGILGTFAFHAFGYRALFFPAGLTAVVAISYGVYAFARGQAG
>NC_016147.2|WP_052299831.1|117683_121409_+|translocation/assembly-module-TamB-domain-containing-protein
MLVASLLVALYWLAQTVAGRDVLLAQIIARLPAGSTFTYSSAEGPLAGPLTLRDVHFHLGDIDFTARRVTLDPDLRPLLGKRLRLDTLEVETAVLDIPPGPDQPIELPRWPEVLPQIELPLDIQADALVVDGLRYTSAGQTVVQVSSARGAIDIGDGYVQASALKLRSTLGNFSVDGHYRPGDGYQTDLTVSAGFPAARGRTPARLGLVARGDVAHMEVAIGGHAPAPVQLNLDVRGASRPDWALRATAQRLDLSLLGVGTAEDPPLAFDLQASGTEGGAAISGQARRGDALVVIEPSHVRIDGQTLTVQPLAVQLLGGRITLRGYADFTDTQDPRFKFAVNARDLKWGQGEQRIDANADLGVAGRKARWVAIGKADLARGQDSARVDFDGRGDLESVLLKTFKATTRAGALEVTGQLAWAPQLSWDVQANLKEFDPGYFAAGWDGAVTGRLASTGAQRDPAAGQGTGLDAALEVPQLGGSLRGRKLAGSGRFNLHGVDGDGVLDLTVGASHVQVQGKVADTLDIEARLAPLQLADLLPAATGTASGTLKLSGPRNAPTIDADLSGSALSYSTYQAREFSLRGRLPWRGTGGELALRGSGVRAGLLLDTLRVQARGAVQDLQLNVQANSAMASLTVAGTAQQQAGNWSGALQTLRIVPSRGDAWALTRAARFAQQGGAFTLSDSCLAGGDGGTLCVSADWPRNGLRARSDRLPLALVQPWLPQQDGRALILRGELTLEAQLRPQGNAWQGQVHLASMEGGLKMGSKARGEIIRYDHFSIDLDLTPQQIQARLGTGFAGNGFIDAKFTTGWEAFAPLQGDVYLYNDRLFWLELFSPDLVRPQGKLKGHIGIAGTRGTPLLSGEAELADFTGELPALGITLVEGRAQLTALDDGSARITGSMKSQSATGSQATGGTLAIDGSLGWQGGDEPLLLNVRGEDFLVSDTTELRAVVAPDMTIALHGLVLGVGGKIHVPSASINLEKLSEGVSTSEDVVVLDPADPEAGGSSRLQLDLAISLGEAVELNGFGLEGSLQGQMSVHSRPGRAMAATGQLDVDGRYTAYGQKLNISRGQLSWSNDDVSDPNIDIRAEREVVSAGVTAGIDVTGRASSPRARVWSSPETSESDALAYLVLGRPLSTANSRETQQVSAASSALSAGAGLLASQLGARIGLDDAGVLESRTMGSSVFGVGKYLSPKLYASYGVSMIGSGTVVTLRYLMRKGFTAEVESSTIETRGSINWRTEK
>NC_016147.2|WP_014159133.1|115518_117567_+|outer-membrane-protein-assembly-factor
MRVLAPLAIAAMLLMPAVSFAAVIVDQVQIKGLDENDEVQRAMAENIRVALTLNDALGRRLGEARLEYLLERTRDQAAAALEPFGYYSPTVEVTSSRRDAEVTGSGAEAASGAPAQQQDQDDADEDAAGQVQRDGGDADGKITTVTAPADVPADAGKGAVARQAAGAANAAGARSTRPRSPAEHMTVTVTVSPGEPVRVRQADIHIDGQGHDDRYLARDLKDFAPRVGQVFDHQTYEASKLRIVRRLAERGYLDADFQQRRVAITRAEHAADIQLSWISGIRYDMGPTIFHQDYFRPGLLNQLVYWEEGSYYHQGKLDRLRQSLVALDYFSSIGIAPNPDAAVDGRVPIEVNLKLAPRTIYQYGLSYGTEYGAGFLAGVERRYLNRRGHKLKTLLDYAQNRKALTTSYRIPAFAWLDGWYTAAAQLYEEQTDYIDARRIELIGSRSGQLNENWTLTASVHALRERWLFQLADEDGDGAEAAAPYRYATYVYPQMEAQYINVDDRLFPRSGLNANMAVRGGLNGVGSDTDFSQIHLAGRWYKGLGLNDRLIVRGELGYTSAGSQDALPPSLRFYAGGDNSIRGYQYREVGPRVRTTGGQYSVGGNKLVTGSVEYEHYYKGGPFGGAIFVDSGTAYNDSPDFRTGVGIGVRYKSPIGPVRVDIAHGLDDADSIVQLYLSIGVAL
>NC_016147.2|WP_014159132.1|113341_115444_+|glycine--tRNA-ligase-subunit-beta
MTQQLPLLIELGTEELPVKALPGLADALFDGIRSGLERRGVAVDATDARPLFTPRRLAVLLPAVSAEQPEQASEVFGPYLNVALDAEGQPTKALSGFAAKAGVEWTQLARVTDAKGERFVHRAVKPGARTAELLPEVIAEAIAAMPIPKPMRWGDHDYAFARPVHWLVVLLGDAVIQMPLMGITSNRMSRGHRFEHDKPVWIGAPNDYVEALAAAHVLVDPQQRRARIIEQVQAAARSVGGDARITDDNLEQVVCLTEWPHAITCSFESDFLAVPQEALIETMEVNQKFFPVLRDGRLTEHFIGIANIDSRDPAQVRAGYERVIRPRFADARFFFDEDLKQGLASMGQGLKTVTYQARLGSVADKVERVAALAATIAARVGADAEQARRAARLAKNDLQSRMVNEFPELQGIAGRHYAIAAGEPAAVALAIDESYQPRFAGDDIALSPLGKVLAIAERLDTLAGGFAAGLKPTGNKDPFALRRNALGLARTIIESGFDLDLRDLFEQAIRLLPPEVQPGADRQIERLALELFDFVVDRLRGYYADRGVSATQFNAVAELKPASLYDFDRRIEAIGNFAALPEAAALAAANKRIGNILRKAQAEGFAIPDHIHRGLLEHPAEAALAEAVEAAIGDTDIALHQRDYVQVLSRLALVREAVDVFFDGVMVNAEDPAVRGNRLALLQRLHGRFGAVADIAQLSA
>NC_016147.2|WP_014159144.1|129571_130372_+|type-I-3-dehydroquinate-dehydratase
MTDAITLPAVRTIAVKGVVIGEGMPRIIVPITAASAAGALAQAGRIGANADTDVVEWRIDYLDIAGDAQALIELAPQVAAAVNGKPVLLTFRTRSEGGAAAIDDAGYGRLYAALIQAGAADLYDVEMCRDQAVVRQIVAAAHAAGAWIVMSNHDFQATPDTAEIVSRLRRQQALGADVLKIAVMPHDPGDVLKLLAATWQLRQSSDRPLLTMSMGPLGAVSRLAGATFGQALTFGMLGAGSAPGQIEVGTLRAILTALDHGGSATP
>NC_016147.2|WP_014159145.1|130519_131299_+|3-oxoadipate-enol-lactonase
MAFLDLPTHRLHYRIDGAEAAPWLTFCNSLGADLSMWDGQVAELAGDLRILRYDRRGHGRSSAAQGLYTIDQLGGDVLALWQALQIERTHFCGLSLGGLTGQWLGLNAADRLDRLVVCATAARIGTAESWAERMATVREKGLEPLVEGTVARWFTKGFSDRHQAQVKAIMDVFLATAPEAYIGCCNAVAQADFRDALPGLGVPLLAIAGDDDPTCPPADLQHIAQTVADGRCAQVPGRHLCNVESAAAFTAVLGDFLRV
>NC_016147.2|WP_122231072.1|131412_131712_-|BON-domain-containing-protein
MAAEGMKHDDTMEHGSMDRDAESDQPGTDTWITTKVKADLLASGKTSGTDISVETTNGVVWLSGTVATQAEKDQAVTEAKGIEGVKKVDASKLKVANKM
>NC_016147.2|WP_014159147.1|132234_133065_-|nitrate-reductase
MSTSPRPRVLMCPPAHFSVDYDINPWMTGNRDQADRDRAARQWDALRELVADVAEVALIEQVPGLPDMVFTANAGLVYRDLAVPSRFRHAERAGEQSHFTRWFSAQRFELGPLEGIEFEGAGDALLDRAAPRLWFGHGHRSDARAGDALGALLGIEVVPLRLVDPRFYHLDTCLCPLSGGHLLYFPAAFDPAAQAAIAARVPQDKRIAVSERDALAFACNAVNLDEVVILNRATPALRAQLEAAGYRVRETPLDEFLKAGGSAKCLTLRLDEPGLA
>NC_016147.2|WP_014159148.1|133218_133650_+|Lrp/AsnC-family-transcriptional-regulator
MADALDALDQDLIALLRADSRTPAALLAKQLKVSRSTVQNRIARLQRSGLLLGFTIRLASETGLHGVRAITQIEVRGGSSDKVIAALRRLPEVVSVYSTNGRWDLVAEVRTEDLAGFDQALRRLRDIEGIASSETSLLLAEQG
>NC_016147.2|WP_014159149.1|133660_135250_-|hypothetical-protein
MSARTLTLPAVVLVSRHAGTWLVHGLWLAFNLGAACLDPPAHMPRLLLSSIGIAFWWMLMSGHLLGTVWQMHRMLLPRTWRTLATLLLPAWALTVLLPALAWAWLDQASLLPGVWVLTVVALATMLLTSVPPIVMAALIPLGFALKLAAHIGIEQPPWTDASALVTPLVLAGLIALCWWPMFRHGAPAGQWLRPIAIALLTGTFSLEQMRQQQAIGWLGGNVHPDLMLPVQKRARAILGVALGPTIGKPRLRALLLGHLWLVALAGLWLIAPLSGQAGTGDRRFLLFLPSIMVAVVSVSALMRLWTLFRKPELGLYELALLPGQATGAGRAHDLARLLLERMGISTAIACAVMAVFGVVLQAPVVYFAMLLGTGLACLLVNATLSLWCSVRGGLHGMVLGWVIGLEAALVLLANHYAIARGQVPGWMLLAWTALLIAAGGALARLTRRLGLRQQPWQARVGRPLPRQASTLLGIGALALAGSILLRVLGMSAPAQVADHRALLTFGLGATGIILVLLGLRIVRRRRSTR
>NC_016147.2|WP_014159150.1|135246_136170_-|ABC-transporter-ATP-binding-protein
MNTAAGSLHLTDIVSTAEAQVPLRAEGLSKRYGRQQVLQDLSLQLAPGTVLGLIGRNGAGKSTLLNLLLGLAEPDAGQAFVFGQPSLRMNDAAKQRLGYVPQQPLAFQWMTPRQLMRFLSQLYSGWDQAHAEALLARWDIRPDKVLSKLSPGESQRLAIVRALAPRPALLVLDEPASALDPVARRQLLREIAAQAGEEGGTVLFSTHIVSDLERVASHVAFLHQGRLLLHTDIDAAKEDIIRVHVPAQVADQLPAPLPGELARHLQPGGVSSLVLVDDGHTARQLAEHPGVRQQHLGLEDLFVEIAG
>NC_016147.2|WP_014159151.1|136166_136562_-|GntR-family-transcriptional-regulator
MDASLLSIQPTSAVPIYRQIVDQLRRLASAGQLPAGQTLPSVREVAAFHAINPMTVSKAYSLLEAEGVLVRQRGKGMAVAAQDRSARSPASRLALLEPALQTVAHHARQLELPDEAVLARLRSLLNQESQA
>NC_016147.2|WP_014159152.1|136838_137546_-|2OG-Fe(II)-oxygenase
MHAHQQDFIAVIPEALDPAACAAIIERFEASGQEAPGRVGGGHFPDLKRSSDIAISGRAGWSDVEQMLNQAVFHGLKQYLRTYPFALIAPVMLQYTPAGGSARRIVYEDLESMDDATLSHLLMTVFRPGRINLQRYRAGEGGYPYWHCELYPKDGQAETLHRHLLWTLYLNDDFQAGQTEFFHQRRSIAPRTGSLLIAPAAFTHTHRGNRPQGGDKYIATSWVLFQPAAKLYGSG
>NC_016147.2|WP_014159153.1|137611_138652_-|class-1-fructose-bisphosphatase
MQPVTLTRYLVEEQRHGRISAELRQLISVVVRACTTISIAVGKGALGGVLGEAGTGNIQGEVQKKLDVISNDILLEANAWGGHLAACASEEMDHCQPVPAEYPKGDFLLLFDPLDGSSNIDVNVSVGTIFSVLRCPPQGVQDPRDEHFLQPGHAQVAAGYCIYGPQTMLVLTTGHGTHAFTLDREQGLFVLTQANMQIPAETAEFAVNMSNQRHWEPQMQAYVADLLAGRDGPRGKDFNMRWIASMVADVHRILTRGGIFMYPWDNKDPSKAGKLRLMYEANPMGLLVEQAGGLASTGRARILDIAPQGLHQRVPVFLGSRGEVQAAERYFQPADASLSASPGVPS

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Crispr_ID: NC_016147_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_2

337819-337894

Orphan

Consensus_repeat	Method
GCCGGGCTGTTGCTCCCTTCTTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016147_2

>merge|NC_016147|2|337819-337894|CRISPRCasFinder
GCCGGGCTGTTGCTCCCTTCTTCCCGCCTGCGCGTGGAGAAGGCTTGGACAGCCGGGCTGTTGCTCCCTTCTCCCC

>NC_016147|2|2|337819-337894|CRISPRCasFinder
GCCGGGCTGTTGCTCCCTTCTTCCC	GCCTGCGCGTGGAGAAGGCTTGGACA
GCCGGGCTGTTGCTCCCTTCTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_014159333.1\|330825_331767_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NC_016147.2\|WP_043290844.1\|343569_344109_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	unknown	unknown	gnl\|CDD\|225687
NC_016147.2\|WP_043290316.1\|332939_334004_+\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NC_016147.2\|WP_014159347.1\|344866_345793_-\|MCE-family-protein	unknown	unknown	gnl\|CDD\|224380
NC_016147.2\|WP_014159336.1\|334184_335072_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NC_016147.2\|WP_014159337.1\|335068_335626_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NC_016147.2\|WP_043290847.1\|345810_346614_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NC_016147.2\|WP_014159334.1\|331961_332708_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NC_016147.2\|WP_014159346.1\|344243_344870_-\|membrane-integrity-associated-transporter-subunit-PqiC	unknown	unknown	gnl\|CDD\|225759
NC_016147.2\|WP_014159339.1\|336650_337817_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|185017
NC_016147.2\|WP_014159330.1\|329404_329659_+\|antitoxin	unknown	unknown	gnl\|CDD\|370460
NC_016147.2\|WP_014159331.1\|329881_330169_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NC_016147.2\|WP_014159342.1\|339927_340659_+\|CoA-transferase-subunit-A	unknown	unknown	gnl\|CDD\|224702
NC_016147.2\|WP_014159343.1\|340761_341400_+\|CoA-transferase-subunit-B	unknown	unknown	gnl\|CDD\|188219
NC_016147.2\|WP_014159350.1\|347808_348702_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NC_016147.2\|WP_014159338.1\|335622_336528_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NC_016147.2\|WP_043290318.1\|341396_343463_-\|glycoside-hydrolase-family-99-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379549
NC_016147.2\|WP_014159332.1\|330174_330651_-\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014159340.1\|338430_339777_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NC_016147.2\|WP_014159349.1\|346696_347812_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223838

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_014159333.1\|330825_331767_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	8.13647e-109
NC_016147.2\|WP_043290844.1\|343569_344109_+\|alpha-ketoglutarate-dependent-dioxygenase-AlkB	gnl\|CDD\|225687	COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair].	1.76449e-39
NC_016147.2\|WP_043290316.1\|332939_334004_+\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NC_016147.2\|WP_014159347.1\|344866_345793_-\|MCE-family-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	2.45827e-39
NC_016147.2\|WP_014159336.1\|334184_335072_+\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_016147.2\|WP_014159337.1\|335068_335626_+\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.92933e-105
NC_016147.2\|WP_043290847.1\|345810_346614_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	4.28603e-127
NC_016147.2\|WP_014159334.1\|331961_332708_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.31768e-90
NC_016147.2\|WP_014159346.1\|344243_344870_-\|membrane-integrity-associated-transporter-subunit-PqiC	gnl\|CDD\|225759	COG3218, COG3218, ABC-type uncharacterized transport system, auxiliary component [General function prediction only].	3.56179e-52
NC_016147.2\|WP_014159339.1\|336650_337817_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|185017	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.	0
NC_016147.2\|WP_014159330.1\|329404_329659_+\|antitoxin	gnl\|CDD\|370460	pfam09386, ParD, Antitoxin ParD. ParD is a plasmid anti-toxin than forms a ribbon-helix-helix DNA binding structure. It stabilizes plasmids by inhibiting ParE toxicity in cells that express ParD and ParE. ParD forms a dimer and also regulates its own promoter (parDE).	8.7446e-34
NC_016147.2\|WP_014159331.1\|329881_330169_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	9.81112e-16
NC_016147.2\|WP_014159342.1\|339927_340659_+\|CoA-transferase-subunit-A	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	2.13817e-114
NC_016147.2\|WP_014159343.1\|340761_341400_+\|CoA-transferase-subunit-B	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	7.55121e-125
NC_016147.2\|WP_014159350.1\|347808_348702_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.34601e-10
NC_016147.2\|WP_014159338.1\|335622_336528_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	7.48526e-123
NC_016147.2\|WP_043290318.1\|341396_343463_-\|glycoside-hydrolase-family-99-like-domain-containing-protein	gnl\|CDD\|379549	pfam14307, Glyco_tran_WbsX, Glycosyltransferase WbsX. Members of this family are found in within O-antigen biosynthesis clusters in Gram negative bacteria, where they are predicted to function as glycosyltransferases.	0
NC_016147.2\|WP_014159340.1\|338430_339777_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NC_016147.2\|WP_014159349.1\|346696_347812_-\|ABC-transporter-permease	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	7.39279e-92

>NC_016147.2|WP_014159339.1|336650_337817_+|nucleotide-sugar-dehydrogenase
MKIAVAGTGYVGLSNGVLLARHHQVVALDIVEAKVRMLNEGRSPIVDEELEAALAEGGLDFRATLDPLDAYTGAEFVIIATPTDYDPETNYFNTRSIETVIAKVLEINPAATMVIKSTVPVGYTEKARAQFGTDNILFSPEFLREGRALYDNLHPSRIIVGERSPRAEKFAALLQEGAIKKNVPVLFTEPTEAEAIKLFANTYLAMRVSYFNELDTYAVTNGLDSRQIIEGICLDPRIGAHYNNPSFGYGGYCLPKDTKQLLANYQAVPQNLIRAIVDSNTTRKDFIAADVLRRNPKVVGIYRLIMKAGSDNFRASSIQGVMKRLKAKGVEVIVYEPALNEPEFFRSRVVNDLDAFKRESDVILSNRRSSALDDVADKVYTRDLFGDN
>NC_016147.2|WP_014159338.1|335622_336528_+|dTDP-4-dehydrorhamnose-reductase
MKLLVLGGNGQVGHELLRALAPLGQVMATTRSGMLEDGTPCELADFDQPHTLTALVERTAPDVVVNAAAWTAVDKAESEPAAAARANAQAPGVLARACAARDALLVHYSTDYVFPGDGTRPYREDDPTAPLGVYGATKLAGEDAVRACGARHMIFRTAWVYGARGGNFLRTMLRVGAQRDQLGVVADQIGTPTPAWLIADATAAAIGHARGQSGTWHLTASGVTSWHGFAEAIFAQALARGLLERAPQVAAITTAEYPTPARRPGYSCLDNTRFQHDFGFALPAWEAGLDAVMEALARDQR
>NC_016147.2|WP_014159337.1|335068_335626_+|dTDP-4-dehydrorhamnose-3,5-epimerase
MKVIETSLPGCRIIEPAVFGDERGFFMETWNAARYGELGLPDRFVQSNVSSSTKGVLRGLHYQWPNPQGKLVTVLEGEVYDVAVDIRRGSPQFGQWTAVLLSAQNKRQFWIPEGFAHGFAVLSERALFSYMCTDVYDKAADAGVRWDDPAIGIDWPVANPSLSEKDAGAPLLAQVAQERLPVLVA
>NC_016147.2|WP_014159336.1|334184_335072_+|glucose-1-phosphate-thymidylyltransferase-RfbA
MKQRKGIILAGGSGTRLYPLTQAISKQLLPVYDKPMIYYPISVLMLAGIRDVLIINTPHEQALFKTLLGDGSQWGMQIEYAAQPSPDGLAQAFLIGRQFLDGAPSCLVLGDNIFHGHGLTEVLARADAREHGATVFGYYVRDPERYGVAEFDADNRVIGLEEKPAQPRSNYAVTGLYFYDDKVCDYAASLKPSPRGELEITDLNKLYLEQGNLHLEPLGRGYAWLDTGTHRSLLEACTFIETVEARQGLRVCCPEEIAYLNQWIDEAQLEALAAPLVKSGYGEYLLSLRGRKVIL
>NC_016147.2|WP_043290316.1|332939_334004_+|dTDP-glucose-4,6-dehydratase
MAQTWLVTGGAGFIGGNFVLEAVKAGNRVVNLDALTYAGNLDTLSSLQGDANHVFVHGDIGDRALVSRLLAEHQPEAVLNFAAESHVDRSIDGPGAFIQTNVVGTLGLLEAARDYWKALAEPARSAFRFLHVSTDEVYGSLGQTGKFTETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKNVRDWLFVTDHCSAIRTVLAKGQVGETYNVGGNAERQNIEVVQAICALLDQRRPRADGKPRSSQITYVTDRPGHDRRYAIDATKLKEQLGWEPQHTFEQGIAMTVDWYLANQDWVKRVLDGSYRLERIGQGVAA
>NC_016147.2|WP_014159334.1|331961_332708_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MKILVAYKRVVDYNVRIQVKPDGSGVVTEGVKLSPNPFDEIALEEALRLRDKGIATEVIVATIAPADAAAHLRNGLAMGANRAVHVVADGPVSPLTAARTLLKLVEKEQPDLVILGKQAIDDDASQTGQMLATLWGRPQATFASKVEIAEGKAAVTREVDAGLETLEVDLPAVVTTDLRLNEPRFIKLPDIMKAKSKPMETIAFAELGVESGPELKTTHYAAPPKRSRGVMVKDAAELVAALKAKGLL
>NC_016147.2|WP_014159333.1|330825_331767_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MSKVLVIAEHLDGVLNASTAKTVSAAAALKPEALEVAVLAADPAAVAEQAAKLAGVTKVLTVANPANAHAIGQVLAPQIAALATGYTHVFGPSTTFGKDLMPCVAALLGVAQVSDLITVEGEHTFTRPIYAGNAIITVEAPADQTVVATVRTASWPEAAQGGSAPIEAASAAATLPTHTRFVGLAAGKSDRPDLQSARRVVSGGRGVGSKENFEIIYKLADKLGAAVGASRAAVDAGYVPNELQVGQTGKIIAPELYLAIGISGAIQHLTGIKDAGTIVAINKDPDAPIFEIADIGLVGDLFQLLPELDAALG
>NC_016147.2|WP_014159332.1|330174_330651_-|hypothetical-protein
MSQPIKPESFRELVASGAVKSVTILGQKGGYALLASIGMQQRPLGTRSGDVRMFSTADTALKLLRELGVYHVNVDVTHYQAGSLRPPRPDTAQKNRAANAALEHDKWFRAQVRQARDGLENGTVELVDSEVMWGRLRARARELDASQARPASEQRRKA
>NC_016147.2|WP_014159331.1|329881_330169_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MAIAYSGKAESDLLDILEYGHTAWPGTADDFMGQLQQRIESTLTSDPNAGRKGREQGTREWVLTGTPYIVVYVKSAAGIEVWRVLHGAQQWPPVA
>NC_016147.2|WP_014159330.1|329404_329659_+|antitoxin
MSRLTIDITSQQHQSLKALAALQGKTIKQYTLERLFPGDAAGDQAWSELETLLRTRIDEGLRGKVSTKGVQAILDEELTEDGRA
>NC_016147.2|WP_014159340.1|338430_339777_-|phosphomannomutase/phosphoglucomutase
MALPAFKAYDIRGRVPDELDEDLARRIGVALADMLGAGPVVLGHDVRLTSPALQDALSVGLRCKGREVIDIGLCGTEEVYFQTDHLKAAGGVMVTASHNPMDYNGMKLVRENARPISSDTGLFEIRDRAEADRTPAGEPIGQEAHRPDKTAYIQHLLSYIKPGTLKPLKIVTNAGNGGAGAIIDLLAPHLPLQFIRIYHEPDGHFPNGIPNPLLPENRAATAEAVQQHGADFGIAWDGDFDRCFFFDEKGQFIEGYYLVGLLAQAILAKQPGGKVVHDPRLTWNTVEMVEQAGGIPVLCKSGHAFIKEKMRAENAVYGGEMSAHHYFRQFAFADSGMIPWLLIAELVSTSGRSLGDWVEDRVAKFPCSGEINFKVDDAKAAVQRVMEHYAALNPQLDHTDGISADFGQWRFNIRSSNTEPLLRLNVETRADAALLKQKTDEISALLQG
>NC_016147.2|WP_014159342.1|339927_340659_+|CoA-transferase-subunit-A
MTQTIAGSARRSGKVFPDAATALADIAADGQTLAVGGFGLCGIPEQLISALRDTGVKDLTVISNNAGVDGFGLGQLLETRQIRKMISSYVGENKEFARQYLAGELELEFNPQGTLAERLRAGGAGIPAFFTATGYGTVIAQGKETRQFDGKHYILETALHADLALVKAWKADTAGNLVFRKTARNFNPACAMAGKLCVAEVEQVLEVGEIDPDQVHLPGIYVDRIVVNPNPEKRIEQRTVREG
>NC_016147.2|WP_014159343.1|340761_341400_+|CoA-transferase-subunit-B
MAWTREQMAARAAQELTDGAYVNLGIGLPTLVANYIPEGVDVWLQSENGLLGIGPFPTEEEIDPDLINAGKQTVTARKGASFFGSHESFAMIRGGHIDLAILGAMQVSEKGDLANWMVPGKMVKGMGGAMDLVAGVKRVVVLMEHVAKDGGHKLLPECDLPLTGVGVVDRIITDLGVFDVTPEGLKLVELAEGVSQAQVRSRTGVALGTQAY
>NC_016147.2|WP_043290318.1|341396_343463_-|glycoside-hydrolase-family-99-like-domain-containing-protein
MAFSVPTRFRSILFPIARALFRAIPMSQSRRDLLRNGLLDRYAHLVPRPPHGKAPTLAAPRRPLLRAVTPAIGHVAYRTEALPAPLPARLIAFYLPQFHPIAENDAWWGTGFTEWHNVANALPQFEGHWQPRIPADLGYYDLRQPEVMHRQARLAREYGIEGFCFYFYWFGGRTLLEKPLQQWLADSSLDLPLCLCWANERWARNWDGRAGVTLIDQQHSEQDDLSFIAHIAPYLRDPRYLRVEGKPMLLVYRPGLLPDAGASTRRWRLWCQENGIGDIHLAYVQGFERPDPRQIGFDAAIEFPPNLASPQNLTAQQRLINPDYSGSVLDWRELAHESAARPLPDYLLYPGVNPGWDNEPRRAGRGRTYLHASPRGYRDWLRATIHVRMSRIPNPQRMVFINAWNEWAEGAVLEPELRLGHAWLQATRDALREAVPATRSPHVVVHAWYLDAFDEIARALEASAIPWRVIVTTSPEREAVVRERLQSSRLSWELEVFENRGRDILPFLRVADRLLDAGVEVVLKLHTKRSTHREDGRLWLEELLSSLLDRNSERIALARFAQEPRLGLLAPDGHLLRVADYIGANTEALDFVCARTGVPSMLWRQGSFVSGSMFWVRLKALRPALDALWTADEFEQEHGQIDGTLAHAMERMVNTWVQYAGYHTRSMGELSGSPPERPSGDYRYAKRG
>NC_016147.2|WP_043290844.1|343569_344109_+|alpha-ketoglutarate-dependent-dioxygenase-AlkB
MAAPAAEALNAALSQAISWETHRLRLFGRWVHAPRLSCWIGDPGAVYRYSGRTFAPQPWPHALLPLRQRLREELGVDFNSVLANLYRDGRDAMGWHSDDEPELGPEPVIASLSLGAARRFVLRRRDDHAVKQALVLEPGSLLVMRGASQRDWQHALPRTARPGGPRINLTFRRIVDAGV
>NC_016147.2|WP_014159346.1|344243_344870_-|membrane-integrity-associated-transporter-subunit-PqiC
MKAPLILILGAALALAGCSSLLGGGADRPTAIYSPQVQVVPDPGWPSTPASIVVAKPSAARVLDSSRIAVRPTPDELQVYQGAAWAQSATAMLQDAVVRTLEDSGKTTGAGTAESGIRGTYKLMLHIRHFEADYAGGQVPSVVLVVNAKLVQNQDQSVAASRTFNVTQPAAGTGTAQVVQAFDQALAQLTSQIVGWTLASAQAQPATP
>NC_016147.2|WP_014159347.1|344866_345793_-|MCE-family-protein
METKANYVLIGAFTLVVGLGLLLFGLWAAKYSSESSWQEYQVVFREAVTGLSVGSPVQYNGIAVGSITKLSLAPNDPSQVIARIRLDASTPVKTDTTAKLAITSLTGPSIIQLSGGSPASRKLTEVDQRDAPVIRTSPSALQNITDTANRIVEKMDQVLSDENVAAISATLVNLQKISGDISNREAGVQALLVSARDAARKLDTTLTTANGTLSDLDRNVVQQLPQTLARLDAALAKLDSAAGNADAILGENRQAINSFANDGLAQLGPTLSELRGLIRDLRRVSDRLEGNPARYLLGRDAPKEFTPE
>NC_016147.2|WP_043290847.1|345810_346614_-|ATP-binding-cassette-domain-containing-protein
MTSPQSPVPSPDDDDAAIQVRGLVNRFGEQTVHDGLDLDVRRGEILGVVGGSGSGKSVLMRSILGLQVPEAGQIQVLGLDARSNDRASRQQIERNTGVLFQDGALFSSLTVGENVQVPLKEHHPDLPESFRYELALLKVKLAGLPGETVNKLPSQLSGGMRKRAGLARALALDPPLLFLDEPTAGLDPIGAAAFDRLIKTLQEALGLTVFLITHDLDTLYAICDRVAVLADRKVVATAPLPEIERLDHPWVQDYFHGPRARAARAAR
>NC_016147.2|WP_014159349.1|346696_347812_-|ABC-transporter-permease
MTPAQTQPEVRIDPAEPTRARLLGNWTLASALEIGRQLQALPEQATVLDATEVGRIDSAGVLALMRHANRRHLAPENLHFRQDHKALVSSIEDVADDRPKKKRDLGFLAALGRLGFQVQGYGHKIMALLSFTGENLVKLLRIAHEPRRLRLTSTVYHMEQVGLDAVPLVALLSYLVGAVIAFLGSTILRDFGAEIYVVELVSIATLRELAALMTAIVVAGRTASAFTAQIGAMKSREEIDAIRTLGLDPIDLLVIPRLIALLVCLPLLTFVAMMAGLAGGVTVGAFNLDIPPQQYLARLHDTIQVRHMLVGLVKAPVFAVVIGLIGCLEGLHVEGTAQSVGEHTTSAVVQTISLVIVIDALAALWFMQVGW
>NC_016147.2|WP_014159350.1|347808_348702_-|DMT-family-transporter
MNIGLGHAMALGSAATWAFGVILARQLGATLPPAALNLFKNGLVLAVLAPLALISTHGQLPALTGSQLALSLASGVLGIAVADTLYFRALNELGAGRMGVVGNLYSPLVLVLGLVFLDERLGPWQWLGFALVAGGVTLVARPSKRGQRQSAHSLRGLGIGLGSIALMAISIVMLKRVLEAQPLLWISLLRLAGAVAALLLLRTWPRMRRHFQFVAANVPWPRLVVAALCGQGLSMVLWLGGYKYAPAAVAAILNESASVFLVILGALWLREPLGRRALAGVALTFTGIACMLAARPP

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Click the colored protein region to show detailed information

Crispr_ID: NC_016147_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_3

416309-416424

Orphan

Consensus_repeat	Method
AAATCGCCGGCGCGAAGGCCGGGCAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016147_3

>merge|NC_016147|3|416309-416424|CRISPRCasFinder
AAATCGCCGGCGCGAAGGCCGGGCAGGGCAAGGGAAAGCAGCTTTCCCGAGTCCCGAGTCCCGAAACCCGAGTCCCGGCTCCAAGCAAAAATCGCCGGCGCGAAGGCCGGGCAGGG

>NC_016147|3|3|416309-416424|CRISPRCasFinder
AAATCGCCGGCGCGAAGGCCGGGCAGGG	CAAGGGAAAGCAGCTTTCCCGAGTCCCGAGTCCCGAAACCCGAGTCCCGGCTCCAAGCAA
AAATCGCCGGCGCGAAGGCCGGGCAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_014159406.1\|409096_410395_+\|putative-lipid-II-flippase-FtsW	unknown	unknown	gnl\|CDD\|274232
NC_016147.2\|WP_014159416.1\|420992_423773_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NC_016147.2\|WP_014159408.1\|411682_413134_+\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NC_016147.2\|WP_014159418.1\|424531_426637_+\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224422
NC_016147.2\|WP_014159419.1\|426725_428906_+\|oligopeptidase-B	unknown	unknown	gnl\|CDD\|224684
NC_016147.2\|WP_014159404.1\|406534_408022_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|223841
NC_016147.2\|WP_014159411.1\|414973_416209_+\|cell-division-protein-FtsA	unknown	unknown	gnl\|CDD\|273483
NC_016147.2\|WP_014159403.1\|405026_406538_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NC_016147.2\|WP_014159410.1\|414083_414977_+\|cell-division-protein-FtsQ/DivIB	unknown	unknown	gnl\|CDD\|224505
NC_016147.2\|WP_043290329.1\|424124_424457_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_148268072.1\|429046_429643_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014159412.1\|416601_417858_+\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NC_016147.2\|WP_014159405.1\|408011_409097_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NC_016147.2\|WP_014159413.1\|418235_419153_+\|UDP-3-O-acyl-N-acetylglucosamine-deacetylase	unknown	unknown	gnl\|CDD\|237294
NC_016147.2\|WP_148268073.1\|430161_430758_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014159415.1\|419765_420719_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_016147.2\|WP_043290328.1\|419282_419756_-\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NC_016147.2\|WP_014159402.1\|403134_405030_+\|cell-division-protein	unknown	unknown	gnl\|CDD\|223839
NC_016147.2\|WP_043290860.1\|410391_411513_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|234825
NC_016147.2\|WP_014159409.1\|413130_414087_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_014159406.1\|409096_410395_+\|putative-lipid-II-flippase-FtsW	gnl\|CDD\|274232	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW. This family consists of FtsW, an integral membrane protein with ten transmembrane segments. In general, it is one of two paralogs involved in peptidoglycan biosynthesis, the other being RodA, and is essential for cell division. All members of the seed alignment for this model are encoded in operons for the biosynthesis of UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein (peptidoglycan). The FtsW designation is not used in endospore-forming bacterial (e.g. Bacillus subtilis), where the member of this family is designated SpoVE and three or more RodA/FtsW/SpoVE family paralogs are present. SpoVE acts in spore cortex formation and is dispensible for growth. Biological rolls for FtsW in cell division include recruitment of penicillin-binding protein 3 to the division site. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.81981e-148
NC_016147.2\|WP_014159416.1\|420992_423773_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NC_016147.2\|WP_014159408.1\|411682_413134_+\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NC_016147.2\|WP_014159418.1\|424531_426637_+\|S9-family-peptidase	gnl\|CDD\|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	0
NC_016147.2\|WP_014159419.1\|426725_428906_+\|oligopeptidase-B	gnl\|CDD\|224684	COG1770, PtrB, Protease II [Amino acid transport and metabolism].	0
NC_016147.2\|WP_014159404.1\|406534_408022_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|223841	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane].	8.69248e-156
NC_016147.2\|WP_014159411.1\|414973_416209_+\|cell-division-protein-FtsA	gnl\|CDD\|273483	TIGR01174, Cell_division_protein_FtsA, cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. [Cellular processes, Cell division].	0
NC_016147.2\|WP_014159403.1\|405026_406538_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NC_016147.2\|WP_014159410.1\|414083_414977_+\|cell-division-protein-FtsQ/DivIB	gnl\|CDD\|224505	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane].	6.38331e-45
NC_016147.2\|WP_014159412.1\|416601_417858_+\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NC_016147.2\|WP_014159405.1\|408011_409097_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	0
NC_016147.2\|WP_014159413.1\|418235_419153_+\|UDP-3-O-acyl-N-acetylglucosamine-deacetylase	gnl\|CDD\|237294	PRK13186, lpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase.	0
NC_016147.2\|WP_014159415.1\|419765_420719_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	8.76651e-47
NC_016147.2\|WP_043290328.1\|419282_419756_-\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	1.79713e-08
NC_016147.2\|WP_014159402.1\|403134_405030_+\|cell-division-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	3.68185e-166
NC_016147.2\|WP_043290860.1\|410391_411513_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|234825	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional.	2.87714e-156
NC_016147.2\|WP_014159409.1\|413130_414087_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	2.32032e-170

>NC_016147.2|WP_014159411.1|414973_416209_+|cell-division-protein-FtsA
MNRKGDKSLIVGLDIGTSKVTALVGEYSPGNPIEVIGIGSHESRGLKRGVVVDIESTVQSIQRAVEEAELMAGCEIRSVYASISGAHVQCRNSPGIVPIRDGEVTWSDLDRVLDAARAVAIPADQKILHAIPREYVLDNSQEGIRNPVGMTGVRLEVHAHLVVCAQSAAANISKCVQRCGLQIDDLILSSLASSVAVLTADERELGVVLVDMGAGTTDLAVFVQGAICHTASLPIAGDHVTNDIAHMLRTPTPEAEQIKVRYACALAQLATAEESIQVPSVGDRPPRRMPRHALAQAVQGRYEEIFEMVQAELRRSGFEELVRAGMVLTGGASKMEGVVELAEEMLQMPVRIGIPQHVTGLGEVVGNPVHATGVGLLLMGSQIEHPRRPSLPTGKAGSLFKKLQNWYRGEF
>NC_016147.2|WP_014159410.1|414083_414977_+|cell-division-protein-FtsQ/DivIB
MSNVLRVLTWILALALVALPVVAVFNGWIGAERWPLTRLRVSGALHRVDPAQLRAVVMPYAQRGFFAVQLSQAQDAVERLPWVERAQVRKRWPDTLEVIVVEHKPFARWGSDRLLSVEGALFPVPRNVDASALPQLGGPDAQVGEVVALYNEASALFAPMGLKVDALVMDARGSWSLKLGSGLDVVIGRADARPRLQRFVRLLPRLLGDPRTLQRADLRYTNGFSLTWAEQSRDPGLKSGDSGPGTPDSVSARATATPATAREAASVWNARAPLLRVPGPGSRVPALSSSAISSRTT
>NC_016147.2|WP_014159409.1|413130_414087_+|D-alanine--D-alanine-ligase
MSAPSFPPPRNTDPAAFGRVAVLMGGTSSEREVSLNSGRNVLEALQARGVQAHAVDGLPALLEQIRAGAIDRVFNILHGGDGENGVLQGLLSALKVPFTGPGVLGSALTLDKIRTKQVWIASGLPTPAFRRIRRGDDLRAAAAELGLPVFVKPSTEGSSVGVFRVLAEQDLQPAIDFAAGYDGELLIEQMVQGEEYTVGILDGIALPSIRIVPAGAWYDYHAKYIAEDTQYLCPGLSGQEEAQIRQLSLAAFESAACSGWGRVDVMRDVSRGLQLIEVNTAPGMTSHSLVPKAARQAGIGFEELCWRILESTFQARPA
>NC_016147.2|WP_014159408.1|411682_413134_+|UDP-N-acetylmuramate--L-alanine-ligase
MIAAARERRLQNTGDLAQVFRRVHFVGIGGSGMSGIAEVLCTLGYEVSGSDAAENAATRRLVSLGARVMRGHNAANVLGTDCVVVSSAIRADNPELMEARSQRIPIVPRAMMLAELMRFRRGIAVAGTHGKTTTTSLTAAVLSEGGLDPTYVIGGQLLSAGANAKLGDGQWLVAEADESDGSFLRLSPLIAVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLAVLCIDDPEVAALAAETPRHVMTYGLSDNADIRAENVVQQAGRMRFTLRLPEDVSVNVTLALPGRHNVLNALAAAAVGWQLGVQPGTIARALANFSGIGRRFNDLGAIDTGRGATVQLIDDYGHHPNELAAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSEVDALVLSEVYPAGEAPIAGADAKSLARAIRARGRNEPVVVSQVGELPAVLPDVLQDGDLLLMMGAGDIGHVAQQIAAQGFSKGTDA
>NC_016147.2|WP_043290860.1|410391_411513_+|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MSVHATASQKSAPAGVQMQEEHPVMILAGGTGGHIFPALAVAKVLRARNVPVVWLGADGQMETRLVPQHDIALDTIAVRGLRGKGALALLGAPLRVLGAVKAAAAVLRRRDPRVVISFGGYAAGPGGLAARLQGRPLLVHEQNRAPGMTNKVLSRFARRVLTGFPGSFAAREEAVGNPVRAEIAAIAAPDQRLADRNGPLRLLVLGGSQGARVLNSAVPQALAALKLPAQVRHQCGEKLRAEADAAYAQAGVQASVESFIADMAGAYAWADLVVCRAGASTLAELCAAGVGSVLVPFAAAVDDHQTRNARYLVEHGAAVLLKQDDSLGVQLQRVLAVLSADAPRRLDMATAARRLARPDAAERIADIILEEAA
>NC_016147.2|WP_014159406.1|409096_410395_+|putative-lipid-II-flippase-FtsW
MNDHRRQATRLESIVGQYDFWLASAVAALISVGVVMVASSSIAMASTPFYYLTRHVLFVGLGLGLAWAAMRMELKTIEKYNRLLLIGCVLLLLLVFVPGLGVKVNGARRWINLLVTRFQTVEAVKVLYIVWLASYLVRFRDEVNATWPAMLKPLGVAVLLIALLLAQPDFGSSTLLLGITAGMLVLGGVNLPRMSMPVLVALPGLVALVVFEPYRMRRVTSFLDPWADQLGSGYQLSNALMAIGRGQWTGVGLGSSVQKLNYLPEAHTDFIFSVIGEELGFAGVCAVIGLYALLVGRACYIGYRCVEMRRHFAGYIAFGIALWIGMQAFVSVGVNLGMLPTKGLTLPLISSGGSSVLMTCAAMGLLLRVSYELSRAERQVALLRGEAAPPPADGSKPSPSPAPAAPVAAAAATTRGSSRLTSRIEPTFERIG
>NC_016147.2|WP_014159405.1|408011_409097_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLLELTRWLTQLESLFALFNYITLRGILAALTSLFLSLWLGPAVIRRLAQFKGGQPIRSDGPQSHFSKAGTPTMGGSLILVTVLLSVMLWGDLRNRYVWLVLVVMLGFGAIGWYDDWIKIVRRDPNGLKSRWKYLLQSIFGLAAGLFLWHTADVAAATTFYIPLFKAVALPLAGVGFIAIAYFWIVGFSNAVNLTDGLDGLAIMPTVMVACALGVFAYASGNAVFSSYLQIPQVPGAGELVIICTAIAGAGLGFLWFNTYPAMVFMGDIGALALGAVLGTIAVIVRQELVLVIMGGIFVIETLSVMIQVASFKLTGKRVFRMAPIHHHFELKGWPEPRVIVRFWIITVILVLVGLATLKVR
>NC_016147.2|WP_014159404.1|406534_408022_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MNRLALSLIAHLAGGHLHGEDTTVDAVSNDTRALRSGSLYVALRGERFDGHDFVAAAAQAGAAALLVEHPVQSELPQVIVADAQLALARLAAGLQRDRSGKVVAITGSNGKTSVKMLVSAILQRAGQTYSSPGNRNNEIGLPLAVIEAPDQAEFAVYEMGAGKPGDIAYLTRIARPDVALVNNVAAAHLERLGSLLGVAQTKGAIYSALPADGVAVINADDAFGEYFAALVPGRRVLRFGLESSAEVSARAVMTDAQGSRFTLVSPDGEAPVALALPGRHNVRNALAAAAIALGCGVPLAVIAEGLAAARPVAGRLLAHRLDRGAMLIDDSYNANPASLDAAIATLAAATRQGWLVLGDMRELGPEAATLHAAAGARARQAGIARLYALGPLSAHAAHAFGEGARVFDSHAALAQALQHDLQQIADPDPGPGTREKQAQTLSVAPAQAAVPGPGSRVPGPVLLIKGSRGSAMDRIVSALLPAAPAHSSGGTAHAA
>NC_016147.2|WP_014159403.1|405026_406538_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MSRAMALSALLPDVPAIPAGVVVHGLTQDSRSVRAGDAFVAIGPVDNSASSWHGLGFVEQARARGAVAILFEPPAPESLPAPADAIAVPGLRARLGALADTFYGHPSQQMTMVGVTGTNGKTSTVQLLSQAWHLRGTVSGSIGTLGAGLYGQLRPTGFTTPLVLELHALLAQLHDAGAQAIAMEVSSHALAQTRVDGVHFDVAVFTNLSRDHLDYHGDMERYGAAKARLFQRPGLKAAVINLDDGFGATLAGTLAGDVQLVGVSAHGAAAARVQAREVVLDNAGIGFDLVIGATTHPVRSPLLGRFNVDNLLAVAGVLLATGDAPAQIARTLTQLQPIHGRMNRLGGVDGQPLVVIDYAHTPDALAQALTSLRAHVAGRLICVFGCGGQRDAGKRPQMARIAQDHADVVIVTDDNPRHEDGEAIVADILAGFSDDAVYAVQRDRAAAIARAIGQARAGDIVLIAGKGHEPYQDIGGVKQAFDDTVQARIALQARAPDPAQVRR
>NC_016147.2|WP_014159402.1|403134_405030_+|cell-division-protein
MSLRQAIGRRLNRNGERRGALPRNRNRARFSLRNRLMLVGCTMALCSVSLIGRAAYVQLVNSDFYQKEGDARFMREIAIPTSRGMITDRNGEPVAVSSPVESVWCDPKELMKNPDRFPELAQALGEPLDSLTRRVSQKADREFMYLKRRINPDAARAIVARHVPGVYAQREYKRFYPQGEAMAHILGFTNIDDRGQEGLELAFDDWLRGKPGLKKVIRDQAGHIVENIDLVRAAQPGNDLTLSIDRRIQYLATRELRNAVEENQAAGGSVVILDVATGEVIAMANLPTFNPNAADLGRPDAHRNRAVTDLVEPGSTMKPLTVSTALAAGVVTANTLIDTNPGYMALRGGFTIRDVPRNNGVLTVGGVITRSSNIGAAKIVEKVPDQTFYDTVRAFGYGSKPHSGFPGEATGTVPSPGSPGWYGTTKTTMSYGYGLNVSPLQIARAYATIGNGGQLVTPTFVKGMRNENAVQVVPAEVARQVIAMMETVVTQGGAKDAAIPGYHVAGKTGTARIAAGGSYASGHYTALFAGLVPATHPRYVMVTVIRDPQAGKYYGGLVSAPVFHNVMEGTLRLMDVPPDDIDSWLAMQARDEARRAAQAPRRAPATLAALPRPLPAPIQAETEAALPRSLE
>NC_016147.2|WP_014159412.1|416601_417858_+|cell-division-protein-FtsZ
MAHFELVETMIPNAVIKVIGVGGGGGNAVAHMVSSSVEGVEFITANTDSQAIKNCGAKLQLQLGGNVTKGLGAGANPEVGRQAALEDRDRIIEALTGADMVFITAGMGGGTGTGAAPVVAQLAKEMGILTVAVVTKPFPFEGRRRMQVALKGIEELSTHCDSLITIPNEKLITVLGRNATMIQAFRAANDVLLGAVQGIADLIVRPGLINVDFADVRTVMSEMGLAMMGTGVARGDDRAQAAAEAAIQNPLLDDVNLAGANGILVNITAGPDFTMAEFDEVGRTVEGFASEDATVVVGTVLDPNMQDEVRVTVVATGLNRAAVRQPVRTGADLGGSFQREPVRAPIKLVRDATTGMPIDAVAMPNTTTSKSDPVVGATQGLGLRRNAGEATAPSAPAGAAELPDNYLDIPAFLRRQAD
>NC_016147.2|WP_014159413.1|418235_419153_+|UDP-3-O-acyl-N-acetylglucosamine-deacetylase
MIPQRTLKNVIRATGVGLHSGEKVFMTLRPAAPNTGVVFRRVDLEPVVEIPADATLVTETTLCTGLSCGAAKVQTVEHLLSALAGLGVDNVYVELSSAELPIMDGSASPFVFLLHSAGIVEQNVPKRFIRILKHVEVRDGDKIASFDPHEGFKLGFTVQFDHPMIPASQSRAEVDFSTGGYIKEVARARTFGFMRDLEYMRERNLGLGGSMDNAIVLDEFRVLNDDGLRYADEFVRHKILDAIGDLYLAGHPILGRYEGFKSGHALNNALVRALLAQTDAWEEVSFGPEVRETAPALYGAPLLAH
>NC_016147.2|WP_043290328.1|419282_419756_-|DUF721-domain-containing-protein
MPHPKSQPRRPASPLPALEAAMASSAADPLRHALRLDALEQQLRPCLPFPLSEHCRLANIAGDRLVFVVDSPVWNARLRLASAELVEMARSLGLGVNSVTARTSVHPLFPTAQAGPPTQGPSPTARQALRVALAMLEESVAAESSIVKQGPHTGAKS
>NC_016147.2|WP_014159415.1|419765_420719_+|M23-family-metallopeptidase
MSFNNIVHNTRSWVSHHLRLRTAQMRRFSHTRPLLSAGILVAGGMMLGLVGRSAFGMAQVSWLQARTERQQAELDQVKRGAQQEINAMSARLGELQAQANRLNALGERLTRIGKLQDGEFNFDEPVGVGGPEGATSDMPPAALADGLDQLQGRFDASGQQLSVLESLLFNRQLDRNATPSRMPLANTYITSGFGGRADPFGGGGERHKGIDFKASVGDPVLSVADGVVSFAGARSGYGNVVEVDHGNGYVTRYAHNSRLVVKPGDLVRAGQTVARAGSTGRSTGAHVHFEVWEDGRVVNPRKFLGENTTPLGGRGRG
>NC_016147.2|WP_014159416.1|420992_423773_+|preprotein-translocase-subunit-SecA
MINSLLTRVFGSRNERLLKQLDRLVVRINALEPEIQKLSDDELKAKTPEFQKRIADGEALDKLLPEAFAVCREASIRVLGLRHYDVQLVGGMVLHLGKIAEMRTGEGKTLVATLPVYLNALEGKGVHVVTVNDYLARRDAAQMGRLYNWLGLSVGVVYPGMAHGDKRAAYAADITYGTNNEFGFDYLRDNMAMAREDRHQRSLHYAIVDEVDSILIDEARTPLIISGPADDSPELYIRVNRIVPSLVRQETEEGGGDYWVDEKSKQVHLSEAGQTHAEQLLRSAGILRDDEDDGLYSPQNLGVVHHLNAALRAHAIYQRDVDYIVRDGEVVIVDEFTGRTLVGRRWSDGLHQAVEAKEGVPVQRENQTLASITFQNLFRMYGKLAGMTGTADTEAYEFQSIYGLEVIVIPTHRPTIRKDFPDQVFLNRTGKFNAVLADIQDCYARGQPVLVGTTSIETSEMLSEHLRKNNVPHEVLNAKQHEREAQIVANAGRPGAVTIATNMAGRGTDIVLGGSLEAELAALGEDAPELDIARVKADWKTRHEQVKAAGGLHIVGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDNLMRIFASDWVQKAMKLIGMKEDDVIEDRLVSRQIEKAQRKVEAHNFDIRKNLLDFDDVNNDQRKVIYAQRDELLDAESVKDNIDGIRADVVADLVARYVPPNSIDEQWDLAGLQAELASEAGIDLPITQWPQQAEELDAERIQARVREALDAHFAQKEAQIGAETMRALEKHVMLTVLDKGWKEHLARMDYLRQGIHLRGYAQKQPKQEYKKEAFELFSEMLENVKREVVTILARLRIRSEEEVAELEAQERRLAEAQQRAMQFQHADTGGYVAEESEARAQRGEGAAGAQAQAAQAAAAGLQGTILREQPKVGRNDPCPCGSGKKYKHCHGQLN
>NC_016147.2|WP_043290329.1|424124_424457_+|hypothetical-protein
MAHRPRDVHAACPADPCLELVLRTLALTGLSLVLLLPGGRGSTELLGWTPLWLAGLPLVAWWSLHRFRLPAWPKTRPAARAALAVSVPSARVAVQARRRRPRPARMPRAA
>NC_016147.2|WP_014159418.1|424531_426637_+|S9-family-peptidase
MNPLALALLAGLAAASATANAQETAMTDDPYQWLEEVEGARPLAWVKERNARTEAELAATAQFKQLEADIRTILDSDAKIPYVEKIGDFYYNLWKDKDHARGVWRRTTLAEYRKPNPTWETVLDIDALNAAEQETWVWHGAQCRKPDNTRCLIALSRGGSDADVSREFDLITKTWVEGGFYRPAAKGGLGWIDADTVYVYSDFGEGSLTHSGYPRMVKEWKRGTPLAAAKVVYEGKADDMYIAAGHDPTPGFERDFVTRTIAFYNDELYLRDKGGALVKVDAPNSARKSVHRQWLGLELREPWTVGGRTYQAGSFLVTRFDAFMAGKREFDVLFEPTDTTSLAGVTFTADHIVLNVMHDVKNRLSVLTHRDGMWISRPLQVGDVPFGAISASAVDSQESDALWLTVTDYLTPTTLLLTDVGQPQARIEPLKAMPAFFDASGDVIEQHFATSRDGTRVPYFLVRPKDLSFDGAAPTLLYGYGGFEISLTPGYSGGIGKGWLEKGGVYAVANIRGGGEYGPRWHQAALKANRHKAYEDFAAVAQDLVARKVTSPEHLGAQGGSNGGLLMGNMLTRYPQLFGAIVVQVPLLDMKRYSHLLAGASWMAEYGDPDTGDWDYIRTFSPYHLFDPGKTYPPTLFMTSTRDDRVHPGHARKMAAKMLDAGKDVRYYENIEGGHGGAADNAQAAHMSALAYTFLWDQLSK
>NC_016147.2|WP_014159419.1|426725_428906_+|oligopeptidase-B
MKPLLALLAVTLLMSTPLSSTAATTATPPDAARKPHVVTAPFGAQRQDEYYWLRDDERSNPQVLDYLRAENAYADTVMAPLKPLQDTLYEEIVARIKQDDATVPYRQRGYWYYTRYEAGKDYPVHARRKGGMQAPEEVLLDVNVLAQGKSYYSVGAWELSQDNQLLAYTDDAVGRRQYTIRFKDLASGKVLPDEIPGVSPNVVWADDNRTLFYVENDPETLLTVRVKKHVLGTPVAQDVLVYEEHDDSFYMGLGRTRDEKYITIGVHSTVSSEERYALAADPETFTVLAPRARDVEYQAEHFDGRWVIRTNADGATNFKLVTAPDGSSSRKDWKDWVAHSDSVYIEDFELFDGFTAIGERSQGLQRIRLLGRDGNKLQSPDMEARDFAQDAQATYVRADEPAYSMGLDINSEHDTPWLRYSYTSLTTPVTTYELNTVTGERRLMKQQPVPGYDASRYTTERLWVSAGDGTQVPVSLVYRNGFSKDGTAALLQYGYGSYGASMDPGFSGPVVSLLDRGMVYAIAHIRGGEEMGRAWYDNGKLLNKKNTFTDFIDVTRALVAQGYAARDRVAAMGGSAGGLLMGAITNMAPDDYRVIISQVPFVDVVTTMLDPSIPLTTNEYDEWGNPENKQFYDYIVTYSPYDNLKPRAYPAMFVGTGLWDSQVQYWEPAKYVARLRDLNTGSQPVVFRTNMEAGHGGKSGRFRRYQEMAEYYAFMLDQLGVAGTAR
>NC_016147.2|WP_148268072.1|429046_429643_+|hypothetical-protein
MTIAIRCCVFLTGLALFAATSTAAAEPDCRQDTFSQEKSCVYGRGSIGMAGIGNQIITRDGQMYFRRLITLTNSGDPVDVDAILFRIDDRRTVQLKAENADRPTVNCSGRLCTWSWNVMAPISASVLAELASAKKLVIAFQGEGRRLGEGDMRRGGQIFARFLSDIRTHESGVLETSQHEAFLVEGRNLIPYAAPAGE
>NC_016147.2|WP_148268073.1|430161_430758_+|hypothetical-protein
MTIMNTDITVAIIGLVGVLVGAAITSFKEWWLHKITRKDTARYLSALLVSKLDKLSLECSHLAGDSGKEGEDGYYYAEHKRPAFELPMEDVDWTSLNPQVQLSVLNLPYRLESISAAVSNEFEHDSPPDFSAAFQQRRYLYAKLGIEASHLSDELRRTFGFPRCTAYDWNPVSYLEETIQSIDQIRERSQKSFNEIGV

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Crispr_ID: NC_016147_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_4

452569-452683

Orphan

Consensus_repeat	Method
GAGGATGGCGTGCGCTGCCGCGTGTCCGTCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016147_4

>merge|NC_016147|4|452569-452683|CRISPRCasFinder
GAGGATGGCGTGCGCTGCCGCGTGTCCGTCAGCCCCCATCCCTCCCCTGCTTCGCAAGGGAGGGGGCCAAGCGCAGCGCGATCGAGGATGGCCTGCGCTGCCGCGTGTCCGTCAG

>NC_016147|4|4|452569-452683|CRISPRCasFinder
GAGGATGGCGTGCGCTGCCGCGTGTCCGTCAG	CCCCCATCCCTCCCCTGCTTCGCAAGGGAGGGGGCCAAGCGCAGCGCGATC
GAGGATGGCCTGCGCTGCCGCGTGTCCGTCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_043290331.1\|440410_442099_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_016147.2\|WP_083833588.1\|461410_462217_-\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NC_016147.2\|WP_014159436.1\|443796_445770_+\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341062
NC_016147.2\|WP_014159453.1\|462953_463286_-\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|168189
NC_016147.2\|WP_014159450.1\|460887_461229_+\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NC_016147.2\|WP_014159435.1\|442954_443422_+\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239825
NC_016147.2\|WP_014159439.1\|447718_449164_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NC_016147.2\|WP_014159440.1\|449160_449940_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_016147.2\|WP_148268172.1\|462279_462879_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|377320
NC_016147.2\|WP_014159445.1\|454269_455931_-\|flagellar-biosynthesis-protein-FlhF	unknown	unknown	gnl\|CDD\|237182
NC_016147.2\|WP_014159437.1\|445873_446959_-\|HDOD-domain-containing-protein	unknown	unknown	gnl\|CDD\|370050
NC_016147.2\|WP_014159447.1\|458235_459399_-\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NC_016147.2\|WP_014159449.1\|460233_460503_-\|flagellar-biosynthetic-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NC_016147.2\|WP_014159444.1\|453428_454283_-\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|349758
NC_016147.2\|WP_014159442.1\|450989_451733_-\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NC_016147.2\|WP_193384097.1\|456154_458218_-\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NC_016147.2\|WP_014159434.1\|442184_442946_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NC_016147.2\|WP_014159438.1\|447049_447709_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_016147.2\|WP_014159448.1\|459425_460214_-\|flagellar-biosynthetic-protein-FliR	unknown	unknown	gnl\|CDD\|376520
NC_016147.2\|WP_014159441.1\|449941_450964_-\|flagellar-motor-protein-MotD	unknown	unknown	gnl\|CDD\|181618

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_043290331.1\|440410_442099_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	6.23689e-14
NC_016147.2\|WP_083833588.1\|461410_462217_-\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	4.07169e-107
NC_016147.2\|WP_014159436.1\|443796_445770_+\|M1-family-metallopeptidase	gnl\|CDD\|341062	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain. This model represents the N-terminal catalytic domain of leukotriene A4 hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog cold-active aminopeptidase (Colwellia psychrerythraea-type peptidase; ColAP), both members of the aminopeptidase M1 family. LTA4H is a bifunctional enzyme, possessing an aminopeptidase as well as an epoxide hydrolase activity. The two activities occupy different, but overlapping sites. The activity and physiological relevance of the aminopeptidase is poorly understood while the epoxide hydrolase converts leukotriene A4 (LTA4) into leukotriene B4 (LTB4), a potent chemotaxin that is fundamental to the inflammatory response of mammals. It accepts a variety of substrates, including some opioid, di- and tripeptides, as well as chromogenic aminoacyl-p-nitroanilide derivatives. The aminopeptidase activity of LTA4H is possibly involved in the processing of peptides related to inflammation and host defense. Kinetic analysis shows that LTA4H hydrolyzes arginyl tripeptides with high efficiency and specificity, indicating its function as an arginyl aminopeptidase. Thermodynamic characterization using different biophysical methods shows that structurally distinct inhibitors of the LTA4H occupy different regions of the binding site; while some (RB202, ARM1 and SC57461A) bind to the hydrophobic hydrolase side, both bestatin and captopril are located at the hydrophilic peptidase side. LTB4H overexpression is associated with different pathological conditions and diseases such as cystic fibrosis, coronary heart disease, sepsis, shock, connective tissue disease, and chronic obstructive pulmonary disease. It is also overexpressed in certain human cancers, and has been identified as a functionally important target for mediating anticancer properties of resveratrol, a well-known red wine polyphenolic compound with cancer chemopreventive activity.	0
NC_016147.2\|WP_014159453.1\|462953_463286_-\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|168189	PRK05698, fliN, flagellar motor switch protein FliN.	9.66136e-45
NC_016147.2\|WP_014159450.1\|460887_461229_+\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	1.67894e-42
NC_016147.2\|WP_014159435.1\|442954_443422_+\|YbaK/EbsC-family-protein	gnl\|CDD\|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	1.89822e-64
NC_016147.2\|WP_014159439.1\|447718_449164_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.64358e-101
NC_016147.2\|WP_014159440.1\|449160_449940_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	3.55296e-54
NC_016147.2\|WP_148268172.1\|462279_462879_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|377320	pfam04347, FliO, Flagellar biosynthesis protein, FliO. FliO is an essential component of the flagellum-specific protein export apparatus. It is an integral membrane protein. Its precise molecular function is unknown.	3.21665e-19
NC_016147.2\|WP_014159445.1\|454269_455931_-\|flagellar-biosynthesis-protein-FlhF	gnl\|CDD\|237182	PRK12727, PRK12727, flagellar biosynthesis protein FlhF.	2.14988e-99
NC_016147.2\|WP_014159437.1\|445873_446959_-\|HDOD-domain-containing-protein	gnl\|CDD\|370050	pfam08668, HDOD, HDOD domain.	7.97538e-31
NC_016147.2\|WP_014159447.1\|458235_459399_-\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	1.14271e-163
NC_016147.2\|WP_014159449.1\|460233_460503_-\|flagellar-biosynthetic-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	5.96039e-20
NC_016147.2\|WP_014159444.1\|453428_454283_-\|MinD/ParA-family-protein	gnl\|CDD\|349758	cd02038, FlhG-like, MinD-like ATPase FlhG. FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.	3.16294e-94
NC_016147.2\|WP_014159442.1\|450989_451733_-\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	1.22743e-132
NC_016147.2\|WP_193384097.1\|456154_458218_-\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NC_016147.2\|WP_014159434.1\|442184_442946_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	5.58955e-131
NC_016147.2\|WP_014159438.1\|447049_447709_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.0221e-48
NC_016147.2\|WP_014159448.1\|459425_460214_-\|flagellar-biosynthetic-protein-FliR	gnl\|CDD\|376520	pfam01311, Bac_export_1, Bacterial export proteins, family 1. This family includes the following members; FliR, MopE, SsaT, YopT, Hrp, HrcT and SpaR All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways.	7.67544e-51
NC_016147.2\|WP_014159441.1\|449941_450964_-\|flagellar-motor-protein-MotD	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	1.88973e-109

>NC_016147.2|WP_014159442.1|450989_451733_-|flagellar-motor-protein
MDKLSLIGGILALCALLLGSVLKGAGIEALWSPAAFVIVVVGTFAAIMLQTHMSTFMLAWKIARWVFMPPSQDRAGVLAKIVEWSNTARKQGLLGLEAQVKDQDDQFIKKGLQMVVDGIEPDAIRNVLETDMHHQQTRDTAAAKVFEGMGIYAPTLGIIGAVLGLIAVMKNLADPSKLGHGIAGAFTATIYGIGLANLLFLPMASKLKALIAEQNESREMILEGLIAIAQGENPRNIESRLSVYVQH
>NC_016147.2|WP_014159441.1|449941_450964_-|flagellar-motor-protein-MotD
MARKHQHEEHANHEAWAIPYGDLVTLLLALFVVMYAISSVNEGKFRAVSDALNAEFGGPPRSVSPLQLGKHQLLGSSFDRPSLATAAARIGPAPASELMQSRARQALDMPRYGKSTAGRLPTDIDGPGGGKDTSEGQLIALGEDLQAVLSDLVQKKLVTVRRGANYLEVEIQSDILFASGVARANPAATNIVRQLAEVLRKVPNAVRVEGYTDNQPIATVQYPSNWELSAARAASVVHVLADQGVPASRLAVVGYGEHQPIADNATAAGRNANRRVMLVILATPQGAPQGPDGIIKPLPVIAQAPAPAASTAAGAADPAPATAAPAMIGAGTHAPATGGN
>NC_016147.2|WP_014159440.1|449160_449940_-|ParA-family-protein
MQIWAIANQKGGVGKTTSTLCLARGLAESARQVLLVDLDPHASMTRAFNVPRHPVPLGTHELFSADAPSLDALARTTPIDGLRLLAAQPGLATLERRSATQPGLGMALQRALANVTHLYDYALLDCPPTLSLLMVNALAAADRLVVPTQTDPLALHGLADMLHTAEMVETSRRRPLARFVLPTLFDRRTALGQQSLELLHGLYAGRVWPDAVPMDARLRDARAIAANAPLTGAGAEAYRQALAWLLVQPPATSPQSQAA
>NC_016147.2|WP_014159439.1|447718_449164_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MSNPPNQDPLANYLDALLDGASREPSRAEEDPVTGLPNRNALLTALDARRMSSEPTTVALLGLDNFRSIIVTLGHGTADTVLQVVAARLMARLPDDVFLARLEGDEFAMAFPSARQKTIEAMLNALLLDLAQPCEVDLHRVHLDACIGMALDHDETADSSDSPGADEVPAVDVSPEVPDALELVTRAQLAMHHAKRSRGRSLRRFEPGMRTEAIDRRRLDLELRRAERDGEFELHYQPQIELKSGRVAGAEALLRWRHPERGLLMPAAFLDALAISGIATTVGWWILEQACRDATTWPLVDGRPLAVSVNLFPAQFDHEDFLHEVDTALANSGLAPARLELELTETIALRNDGSAGATLQALRRRGVRVAYDDFGTGYASLSMLHHLAVDRVKIDRGFVRDVMQDRGDAAIVRSILLIARNFDLQVTAEGVESTVQAEFLRALGCNEVQGYLYSPALPAPEFDQWLANYQQARQLPGGRLG
>NC_016147.2|WP_014159438.1|447049_447709_-|sensor-histidine-kinase
MSASGHPTPSPPALPTRQRLAVQEAERARIARDLHDELGQLLTALRLSASALAQTLQDPAQQDLACDVLALAQDALERIRRLARGLHPPQLDSFGLVAALQALCEDLSRRGPARLQLTLATPVPRAAAEVELAAYRIAQEAISNALRHGQATHVRLHLSVEASLLQLQIDDDGRGHDIDAAPGFGRLAMRERATALGGTLQETAAATGTCLIARLPLHA
>NC_016147.2|WP_014159437.1|445873_446959_-|HDOD-domain-containing-protein
MHIVVAGQHQQDAATLRAELVEQGLDWRVTWLPLDDGPTPLDALQAPDALVCFSADGWNRCSLLLNHAREHHPLAARFVLMDGQRDEEVMHALDVVHRVLPEPLDGAAVIEAIESMAALRDLLDDAGLKQAIERAGPLPAAPRQYLTLTRMLRDPATQAGDVVAVVSQDPALAARVLRLSNSAYYSGGREISDLRTAVIRLGQDALRQLVLASEVFSSGPGADVVRERAMSISRLSAQLLPGASAGLAGTAGLLSQVGLLLPPMQVQQGGTAVILPQGIAGAYLLGLWGLPTPIVEAVAFHQQPAQSGTVFWVTGAVHVAAALVEGHEPDTDYLRRVGRLDQLPRWRALADAQLEPVASPG
>NC_016147.2|WP_014159436.1|443796_445770_+|M1-family-metallopeptidase
MRAMLLSLSTAAVLVAGCSKSPEPDHTPATAAKPAAVNTPDRRHDESSYAQPDQVVIKDLALDLRLDFDARQIGGTATYRLDWKDPAATALVLDTRALTIEKVEGGDAAGKTFAPLQYALADADQVLGSKLTVLAPQRNPIVRITYHTAPEASGLQWLAPSMTEGKQLPFMFSQSQAIHARSWVPLQDTPGVRFTYTAHVTSRPDLMVLMSAGNDPASVRDGDYHFVQNKPIPSYLLAIAAGDLVFRPLSDRAGVWAEPAMADRAAAEFVDTEKMITTTEQLYGPYRWGRYDILVLPPSFPFGGMENPTLTFATPTVIVGDRSLVSLVAHELAHSWSGNLVTNASWKDIWLNEGFTTYVQARITEALYGQEMAEMERQIDQAELAANELKALPPERQLLRMPSLGGADPDDALSEVAYVKGAWFLQFLEQRFGRELFDPFLRKWFDDHAFTSVTTDAFVDDLKNNLLPRNPNAVTAQELDAWLDQPGIPPSAPRAQSRGFALVDTARIAWLGSGTLPSSQVTEQWVTQQWVHFIEGLGETQPLDKLKQLDATYHFTGTPNGEIAMRWYPLAIRSGDRDAWPAAGEFIQRVGRRKLILPIYAELVKTPEGLAFAKEVFARAEPGYHPITTGSVRAMLDKAAAPEPQASVAPTPSVPAH
>NC_016147.2|WP_014159435.1|442954_443422_+|YbaK/EbsC-family-protein
MSLASVRAFLAAHAPDLEIVVTDGSTATVAEAAHQHGVQPGQIAKTLAFCKQDGEAFLVVAGGDARMDNARMKAAFGGKTRMLDPERVLALTGHPVGGVCPFGLATPLPVYCDVSLRCFDVVIPAAGATNSAVRIAPGRMAELIDASWVDVCRQA
>NC_016147.2|WP_014159434.1|442184_442946_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSESPYTSGTTHFGFRDVAARDKQKLVGQVFTSVAGKYDLMNDLMSLGIHRLWKRYFTATAQVKPGDRVLDLAGGTGDIAALLRERVGKTGSIVLGDINAGMLTVGRDRMTDRGLVAGMEYVQLNAEALPFPDNSFDLVTIAFGLRNVTDKDAALGQMYRVLKVGGQARVLEFSEVTPEWFKPVYDFHSFKVLPRLGKLFAGDADSYQYLAESIRKHPPQEQLKAMMAAAGFARVRYTNLSAGIVAIHDGYKA
>NC_016147.2|WP_043290331.1|440410_442099_-|MFS-transporter
MVDKYAPRQWLPHERPMLPGSASTPLHRPLRRVQYAIVGTVVALTGGLGNALITANLQYLQGPLGAYAYEMAWLPAAYVMTNLSANLVLVKFRQQFGLRHFTEIFLSLYALIALGHIFVNDLSSAIAVRAAHGFAGAALNSLGIYYMIQAFPARHRLRALVIGLGMGQLPLPLARVFTTELLELGEWRGLYLFELGLAVVALACVIMLKLPPSDRIRTFEKRDAATIVLFGAGAAGLAAVLSLGRYLWWTATPWLGVTLACSIVLLAAALWLEHHRANPMINTRWLAGGDMLRLGLTLLLIRIVLSEQSTGALGFLQGLGLGNDQMHTLFLVMLGGCILGVGLSALLIRREHVGYHLIAAVAAIAVGAFMDAGSTSLTRPAQMYLSQFLLAFGSVFFLAPAMISGIGPLMAQPGNLISFVVLFGMAQNLGGLVGSAFLGTLQVVREKYHSSILNEHLTLLDPQVAARVQAYAAAHAHTVGDPAARPALALRQLGTVATREANVLAYNDVFLAIGWIALATLAWNGALLAWRWWHPPAPPPANPAPASTPALPIPSDAASGHP
>NC_016147.2|WP_014159444.1|453428_454283_-|MinD/ParA-family-protein
MQLPDASALRMPRVIAVASGKGGVGKTTTSINLAAAMVNAGQRTLLLDTDLGLANADVMLGLSPRFTLSDVFAGKCTLADTLLEGPNGLLVVPAASGKQHMAQLSAQEHVGLVHAFSELDLPLEVMVIDNAAGIADGVLTFCQAAHDVVVVVCDEPASMTDAYALIKVLGRDRGVQRVHVLASQVADAAEGPALFAKLERVVSRFLDITLNYLGAIPRDEWLRRAVQRQEAVVDAFPSAPSAAAYREVARRARQWQQPTGPRGHVEFFLERLVGQPAAPGSRTP
>NC_016147.2|WP_014159445.1|454269_455931_-|flagellar-biosynthesis-protein-FlhF
MNIKRFVASDMRTALRMIRDAQGPDAVILSSQPVAGGIEVVSATGYDQAALARAMRAAGADPTDSSPAALSALAQGHAGISAAAGIPAPPAPPATPAAAGGQADPAAAFAAALTSPRAETAAPESLLARARARLRGQHGEQTLAEQAPAPAPAAPTRTAAPAQLHAAQAEVAQTPVPDFAASLRARLAASQAQARVTQDMTGTDQAQLAAPLAQVTVGAEVEAAAPAALTPAAAPVEADRPALSLVPTAEVDPAIAAMREEMARMRALMETQIEQLSLERLRGSPARAAAFDALIGHGCEQSLAQAVALRIDPALPVSQINAALIAELARSLSIAASESIDEGGVIALVGPTGAGKTTTAAKLAARFAARHRARDVALVTTDCERPGAHEQLQAHGRKLGITVCEARGIGGLQLALEQLADYPLVLVDTTGYAPTDRALFNQILWLRATRKVRSLLVLPANGHPQDLGEVIRRYRPAAPEGLVLTKLDETGYLGSALSVSTRAGMPIAYTTHGQRIDTDIEAGDAERIAQAMESARRSSEVATHGIEARHAVA
>NC_016147.2|WP_193384097.1|456154_458218_-|flagellar-biosynthesis-protein-FlhA
MSVNGVIGAIRSGAAAPLVVVAMLAMVIVPLAPIVLDGLFTINIALSLVVMLAVVYVKRPLEFSIFPSVLLMVTLLRLALNVASTRVVLLHGHKGPGAAGHVIESFGQFVIGGSFAVGIVVFAILTIVNFVVVTKGAGRISEVSARFILDALPGKQMAIDADLNAGLLTREEAKARRQEVREEADFYGSMDGASKFVRGDAIAGMLILAINIIGGLLIGVLQHDMGFGDAFRTYTLLAIGDGLVAQLPALLIATAVAMLVTRSTGEQDMGATVSRQVFGHQRALTVAALLLGLIGIIPGMPNIPFLLLAGILGFAAFRLHQRTLAAPQAEAAAAASAGAAAAPNAELSWDEIRPVEPLALEVGYKLIALVDKQQGGELLARLKGVRRKLTQDLGFLIPAVHVRDNLELAPGQYRVLVHGVPLAGGEIHPDRELALDPGRVFGALDGIPGKDPAFGLDSTWILPSQRAHAESLGYTVVDAATVVATHLSHLIRERAAELLGLEEVQQLLATLGRGGNAKLVEDLTPKLLPLSVVAKVLQSLLADRVPLRQIRQIVETLLEHAPHTQDPAQLTAAVRVALGRFIVQEINGMAEELPVYTLAPQLERVLQDSVNGAGAALEPGLAERIHQNLSQCVTQQESKGEPAVLLVPGGVRASIARLVRHSVPALSVLAYSEVPEDKRLRLVGAVG
>NC_016147.2|WP_014159447.1|458235_459399_-|flagellar-biosynthesis-protein-FlhB
MSSQDQEDRTEAPTEKRLRQAREKGNVPRSRELANVAVLGCAVLALKASAGHIGAASRDWMRAALHYDRALLDAPDLLLPHAAGLLGSLVAPMLPMLFAALIACAISPAIMGSLRFAGQSLQPDFSRLNPMSGLARMWGRESLAEVLRSLLRVALIGGIGGWMVYRAFKALLGMPQASLEQSVAGGVQMAMTTLLAMVGALGALALIDVPWQHFQYRARLKMTKQEIRDEHKEAEGNPEMKARVRQVAMQMSRRRMMEAVPTADVILVNPTHYAVALKYKADGGMRAPVVVAKGVDEMAMAIRELAGQHRIAVVEAPPLARSLYRQAQLDQEIPVKLYAAVAQVLSYVYQLRAWAPGRGPMPSLAPVDAGPEGAVDFDPHGAGESSP
>NC_016147.2|WP_014159448.1|459425_460214_-|flagellar-biosynthetic-protein-FliR
MDTVTLTTSTGVDLFGLLATVLWHALRIGAAVQVLPVIGGRTLPARVRLILVLALSATLSTVLPPAPPMAIDAATVLGVLREFTVGIAIGLMLRLAFEAGQLAGELVSQGMGLSFATMADPLSGASSPVLAQWFFLVFSLLFFTLDGHLALISLLADSYVNLPIGAALPDRQAVLSAVPEFFGACLRAGVLLALPVIMALLAVNIAFGVLARAAQQLNPMQIGLPVSLLVGLVLLMLLARQLQAPVQGLFDQAFAAARAVTG
>NC_016147.2|WP_014159449.1|460233_460503_-|flagellar-biosynthetic-protein-FliQ
MTPETAMTEISRGLETALVLGAPPLLAVLVIGVVVGIAQAATQINEPTIAFVVKALTLVATLAVAGNFLLGRLTSFTVDLFHRIPQLIG
>NC_016147.2|WP_014159450.1|460887_461229_+|endonuclease-domain-containing-protein
MDALRHRARTLRNAPTDAEHRLWQRLRGRQLAGVKFRRQMPIAGFIADFAAPAARLIVELDGGQHGARAQADARRTAALNAAGYRVVRYWNHQVLQQTDAVLEDLLRRLALPD
>NC_016147.2|WP_083833588.1|461410_462217_-|flagellar-type-III-secretion-system-pore-protein-FliP
MALPLAGSALAQQAAAPAAPQAQAQAPAATPAQNSLPSVPDLAGQQLPQLNVGQVGGEKVSMPLQVLLLMTSITLLPAALLGMTAFTRIIIVLGLLRQALGTGQTPSNQVLLALALFLTFMVMTPVFDASWAHGIAPYLDKTMDFKTAWSAAIDPFRGFMLAQVRQNDLMTFAGLSHTGPYANAQDVPFGVLAASFLTSELKTAFEIAFLIYIPFVIIDLVVASVLMSMGMMMLSPMLISAPFKILLFVLVDGWVLVVGSLASSFNPF
>NC_016147.2|WP_148268172.1|462279_462879_-|flagellar-biosynthetic-protein-FliO
MAIASTDAGNTAAPDQASQIPAQREATPAANTPAGNAPTQARATGSDAAPAAGTPASAPAQVERQFTVPGHPASTATASHLGTPIGAPAASPGGAGSIGGAVLALVLVVGLILVLGWLAKRMPGIGGASNPALKVIGSLSLSPRERVVVVAVGDTQLVLGTGAGGTRVLHQLDTPLPVTPAKAPPAFAQVLAQRLGRKP
>NC_016147.2|WP_014159453.1|462953_463286_-|flagellar-motor-switch-protein-FliN
MSTENAAPAAFDPLTAEPGAPVAGDLNLDVILDVPVQLSLEVGRTRIPIRDLLQLSAGSVVELERAAGEPLDVFVNGTLIAQGEVVVVNERFGVRLTDVVSPAERIKRLK

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Crispr_ID: NC_016147_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_5

1067999-1068142

Orphan

Consensus_repeat	Method
CGTAGGGCGGGTCTTGACCCGCCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_016147_5

>merge|NC_016147|5|1067999-1068142|CRISPRCasFinder
CGTAGGGCGGGTCTTGACCCGCCATTGCCATGCATCCCCACACACGCATGCATGGATCGAGCACGTAGGGCGGGTCTTGACCCGCCACCGCGGTACGGCCTGGATCGCGATTGCGGTGCGACCACGGCGGGTCAAGACCCGCCC

>NC_016147|5|5|1067999-1068142|CRISPRCasFinder
CGTAGGGCGGGTCTTGACCCGCCA	TTGCCATGCATCCCCACACACGCATGCATGGATCGAGCA
CGTAGGGCGGGTCTTGACCCGCCA	CCGCGGTACGGCCTGGATCGCGATTGCGGTGCG
ACCACGGCGGGTCAAGACCCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_014160012.1\|1072814_1073162_+\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|376440
NC_016147.2\|WP_014160015.1\|1076196_1078119_-\|PrkA-family-serine-protein-kinase	unknown	unknown	gnl\|CDD\|185352
NC_016147.2\|WP_014159998.1\|1053427_1054072_+\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|225676
NC_016147.2\|WP_014160014.1\|1074940_1076164_-\|YeaH/YhbH-family-protein	unknown	unknown	gnl\|CDD\|377280
NC_016147.2\|WP_043290964.1\|1070767_1071346_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_158308227.1\|1054121_1055735_-\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|224332
NC_016147.2\|WP_043290410.1\|1068145_1068790_-\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|368723
NC_016147.2\|WP_014160017.1\|1078864_1079557_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NC_016147.2\|WP_148268182.1\|1065001_1065886_+\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379006
NC_016147.2\|WP_014160009.1\|1068770_1070087_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NC_016147.2\|WP_014159996.1\|1051881_1052472_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NC_016147.2\|WP_014160018.1\|1079593_1079911_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376564
NC_016147.2\|WP_014160004.1\|1062996_1063833_-\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NC_016147.2\|WP_014160000.1\|1055903_1056782_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NC_016147.2\|WP_014160013.1\|1073408_1074944_-\|SpoVR-family-protein	unknown	unknown	gnl\|CDD\|236973
NC_016147.2\|WP_014160003.1\|1061105_1062494_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|179872
NC_016147.2\|WP_043290411.1\|1071342_1072767_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238287
NC_016147.2\|WP_014159997.1\|1052605_1052992_-\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259856
NC_016147.2\|WP_014160005.1\|1064127_1064892_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NC_016147.2\|WP_014160001.1\|1057044_1059642_+\|bifunctional-aspartate-kinase/diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|236358

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_014160012.1\|1072814_1073162_+\|MGMT-family-protein	gnl\|CDD\|376440	pfam01035, DNA_binding_1, 6-O-methylguanine DNA methyltransferase, DNA binding domain. This domain is a 3 helical bundle.	6.60064e-17
NC_016147.2\|WP_014160015.1\|1076196_1078119_-\|PrkA-family-serine-protein-kinase	gnl\|CDD\|185352	PRK15455, PRK15455, PrkA family serine protein kinase; Provisional.	0
NC_016147.2\|WP_014159998.1\|1053427_1054072_+\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|225676	COG3134, COG3134, Predicted outer membrane lipoprotein [Function unknown].	2.18362e-12
NC_016147.2\|WP_014160014.1\|1074940_1076164_-\|YeaH/YhbH-family-protein	gnl\|CDD\|377280	pfam04285, DUF444, Protein of unknown function (DUF444). Bacterial protein of unknown function. One family member is predicted to contain a von Willebrand factor (vWF) type A domain (Smart:VWA).	0
NC_016147.2\|WP_158308227.1\|1054121_1055735_-\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	9.97575e-57
NC_016147.2\|WP_043290410.1\|1068145_1068790_-\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	1.93391e-37
NC_016147.2\|WP_014160017.1\|1078864_1079557_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	1.01017e-28
NC_016147.2\|WP_148268182.1\|1065001_1065886_+\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|379006	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake.	1.9697e-39
NC_016147.2\|WP_014160009.1\|1068770_1070087_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.88713e-133
NC_016147.2\|WP_014159996.1\|1051881_1052472_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	7.52508e-24
NC_016147.2\|WP_014160018.1\|1079593_1079911_-\|IS110-family-transposase	gnl\|CDD\|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	5.60036e-09
NC_016147.2\|WP_014160004.1\|1062996_1063833_-\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	6.71864e-102
NC_016147.2\|WP_014160000.1\|1055903_1056782_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	8.37011e-64
NC_016147.2\|WP_014160013.1\|1073408_1074944_-\|SpoVR-family-protein	gnl\|CDD\|236973	PRK11767, PRK11767, SpoVR family protein; Provisional.	0
NC_016147.2\|WP_014160003.1\|1061105_1062494_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|179872	PRK04690, murD, UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase.	0
NC_016147.2\|WP_043290411.1\|1071342_1072767_+\|hypothetical-protein	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	2.52423e-10
NC_016147.2\|WP_014159997.1\|1052605_1052992_-\|HU-family-DNA-binding-protein	gnl\|CDD\|259856	cd13834, HU_like, DNA-binding proteins similar to HU domains. This subfamily consists of DNA-binding proteins similar to HU domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta).	2.7252e-29
NC_016147.2\|WP_014160005.1\|1064127_1064892_+\|RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	2.27374e-90
NC_016147.2\|WP_014160001.1\|1057044_1059642_+\|bifunctional-aspartate-kinase/diaminopimelate-decarboxylase	gnl\|CDD\|236358	PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase.	0

>NC_016147.2|WP_148268182.1|1065001_1065886_+|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MALPLSAAPVPGEDDPHVLVLGRISDDPKAHYAQLKPLLDYVVAHMTEVGITGGRILMARDARQMSSYLRRSRVDWVTETAGTGTELQRRSGAQPLLLTERGGTSAYHTLLFTRADSGITSLADLRGKSVALQGVGSTSAYLMPAAMLIDAGLPLEILLSPQDRPDAASVGYVFARSELNIAAWVDKGMVDAGALSNLDWQDPQRVPAAFRANMRVLAQSPDFPRALEMVRPGLDPRVRARLRQVLLDAAQDPAAAVAMKRFFGTTRFLPLDSAALQGLDRVRDAAARVREQIE
>NC_016147.2|WP_014160005.1|1064127_1064892_+|RNA-methyltransferase
MDSHAIISAARIRFVLVGTQHPGNIGAAARALKTMGLTRLVLVQPEKFPHEEACRRAAGADDLLAQAVVAPDVATAVADCRLVLGCTARSRRVALEEHSPRQAAARLAQAAGAGPVALLFGRERTGLTNEELQLCHAAVHIDANPDYSSLNLAAAVQVLAYETRLALQDAAAPVEDPAEPRPAPATHAQLEGFFAQLAQTLEQIDFHKGRAPESAMRKLRRLYLRTDLDEKEVRLLRGILADCQRMARLAQPEG
>NC_016147.2|WP_014160004.1|1062996_1063833_-|inositol-monophosphatase
MLNPVVTVMTKAARIGGNVLLRSINKLDALHVVQKERMDYASEVDADAEKAIIKELRRAYPDYGIVGEEGGIVPGKNGRYHWVIDPLDGTSNYLHGFGHYCVSIALVDNGEPTDAVIFDPLRNELFTASRGAGAQLNERKIRVSERKELAGAMIHTGFPPRERARVGAHLECVRELLNQAEDIRRTGSAALDLAYVACGRADAYFEAGVKDWDVAAGVLLVREAGGKVSDFKGASTGRMDGVGPETRQLIAGNLRVADALQKVVASSGYAAAFNAFAS
>NC_016147.2|WP_014160003.1|1061105_1062494_+|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MRISQLEGQRVALWGWGREGRAAHALLRSRLPSLPLTLFCSQAEAVQAAALGDGLLTARTDITGEALGGFEVVIKSPGISPYSAEAVQAQARGARLLGGTALWFGEHPEARTVCVTGTKGKSTTTALLAHLLRAGGHRTALAGNIGLPLLEVMDPQPAPQLWAIELSSYQTGAVADGGVAPEVAVVLNLFPEHLDWHGSQQRYIQDKLALVTRAHPRIAVLNAADPLLFKLELPHSRIVWFNHAQGWHLRGDVLYRGDAEVFDTRAVPLPGRHNRGNLCAALAAIEALGIEASALAPAALTFQPLPNRLQTLGTRNGISYVNDSISTTPHATLAALECFSGQRIALLVGGHDRGLDWHDFAQAMRMQAPLGIVTMGANGPRIHALLQEVAGQGGFALSSAPDLASAMQQAEAMLGGQGVVLLSPGAPSFGMYRDYVERGKEFARIAGFDPEAIVAIPGLGVA
>NC_016147.2|WP_014160001.1|1057044_1059642_+|bifunctional-aspartate-kinase/diaminopimelate-decarboxylase
MSASPPNDRWIVLKFGGTSVSRRHRWDTIGKLAKKRAEDNHARVLIVVSALSGVTNELTAIADGAADAASRVAALELRHREFLAELELDAEAVLGQRLAVLRSLVADPRATARTLDWQAEVLAQGELLSSTIGAAYLSAGGLDIGWCDARQWLEAMTIPNQSAWAQRLSVSCDPRGSEDWRARFCAQSNRMLITQGFIARHGDGGTAILGRGGSDTSAAYFGALLKAQRVEIWTDVPGMFSANPREVPDARLLTRLDYFEAQEIATTGAKVLHPRSIKPCRDAGVPMAILDTERPELPGTSIDGNALTVPGVKAISRRNGIVLVSMEGIGMWQQVGFLADVFARFKKHGLSVDLIGSSETNVTVSLDPSENLVSTDVLAALSSDLAEICRVKVIAPCAAITLVGRGMRSLLHKLSDVWATFGKERVHLISQSSNDLNLTFVIDEADADGLLPILHAELIDSGAMPVAETSVFGPRWRQIAGTVRARQTPWWRSQRARLIELAAAGTPAYVYHLPTVRARARALNAIGAIDRRYYAVKANTHPAILKALVEEGFGLECVSLGELRRIFEVLPDLSPTRVLFTPSFAPHPEYAQAFALGVTVTVDNLELLQQWPDMFQGRSVWLRVDLGRGDGHHAKVRTGGRDSKFGFPFERVDDFIAAASATDVRITGLHAHLGSGVDTAQHWKQVCDELGGIAERIGTVEVIDIGGGLPIPYTADDEPFDLEAWGAGLAEIKAAYPGFGLAIEPGRYLVAEAGVLLSHATQVVAKQGITRVGLDAGMHTLARPALYDAWHDVVNLSRLDLDADAPFDIVGPICESSDVLGRRRPLPASTAPGDVMLIADAGAYGYVMASHYNLRGLPKEEVLDV
>NC_016147.2|WP_014160000.1|1055903_1056782_-|PhzF-family-phenazine-biosynthesis-protein
MTSRRFFQVDVFSPRPGCGNALAVVLDAQGLDQAAMQAIARWTRLPETTFVFPAADAASSYRIRMFAPHHEVPFAGHPSIGTAHAVLAAGLAQPRQGMLVQDGIAGRLPLKVETIDGIGRIAIGVPRAQLVEVVDAADARLAAAIAGWPLGALPPALMDGGRRWWVVELADQASLRGLSPDWDAIAALAQASAAMGVFAYARVAGNADYQLAVRAFVGNGRRFEDAASGAANAVLAAWLDRQGALPGQDGRYVASQGREVGFDALLELRIDADGQVWSGGQVQTVVTGMLDW
>NC_016147.2|WP_158308227.1|1054121_1055735_-|SMP-30/gluconolactonase/LRE-family-protein
MSENRRKATSTIERALDVLEAIGTSPQGVTFAEIARKVQLPRTTAYRMLSGLIERNLVRRESTRRAYRLGFGALQLSRESHPAPALVAAANIELNYLRAITGETTSLWVRDGLEVIALERTGGAHRSQSDTHVGQGRLLHVTAAGKALLAAMRTGERNPLLARLPMTPFTPNSATSREQVDAMIATVKAQGYAIDDEESRLGARCVAAVIRDMQGMVRGALSLSGATVRFTPERMARFGTELTEAAQRIGERLAGTVEVTHDDQVQHVPGPAARGGDFATWSTVRNCWYWVDTATATLHRAQDHQDCVLIALEVQARSLHATPNGLEVVHEGGILRLDFDGKAVQRPLERRGGAGPLAACVQPDGREWQVTPDPAGGYRIATWLHTGVAVPGWRIDDRIDALCWNPQGTRLFAASATTGTLYEMRPGDARIRRLAVVPKASGEIRGVAADAHGDVWVALYGGWAVARFSAEGGMMQEVVGLPVAWPTSLAVGGRDGRQLAITTRIGPQPDDAVAQRAPALEASATGLYVLTRPALAK
>NC_016147.2|WP_014159998.1|1053427_1054072_+|glycine-zipper-2TM-domain-containing-protein
MIRATLVVALLGLACMGHAQAQSRYADYYRQAHGDPGEDARSFRSDGDYGDRRGSENEDYARVVRVDPIIVAPPPARQQCYERDADERSTQGGGDAVGNDTPQATPGGRVGATILGGVLGAVVGSSFGGGTGRVVGTAVGTAAGTAMGQSVYDNSHTTRGTVRVCEPLADPRADGEVDGYEVTYEYAGRQYHTRTAYHPGDRIRVRVDVVPLQD
>NC_016147.2|WP_014159997.1|1052605_1052992_-|HU-family-DNA-binding-protein
MAKTTSKKAAPKKAAKTAAKPAAPKPIKEALTKSGLVAHIADNSGVAPKDVRAVMAALQSAIQGSVSKKGAGSFTLPGLLKIKTVSVAAKPRRKGINPFTKEEQWFAAKPASTKLKATFMKSLKDAAA
>NC_016147.2|WP_014159996.1|1051881_1052472_-|M23-family-metallopeptidase
MQPALDIATPTRHARRVLAPMIFLAMLGFAAGWAWRQPLLDTPRMLWRISRMPPATALPSPVQGVPARAIAATFGAPRGSTRTHAGVDIFASRGMPVRSATAGIVITIGEGGLGGKQVWILGPGRERHYYAHLDGWAEDLHEGQSILPGDLLGHVGTTGNARGTPPHLHYAIYGRQGARDPLPALRAWPGQDPPEH
>NC_016147.2|WP_043290410.1|1068145_1068790_-|exopolysaccharide-biosynthesis-protein
MTRSSADPNEPGQPAQSTRSLLEDMARGDPAERLRLVDILADLQQGAFGMLLFIGTLPSFIPIPGLAGGISGPLVMLVGAQLLLGLREPWLPQFIAIRGPARHSVVRFGEVIARPLRWLERMVRPRWPAMLDSRPASAFTGLLLLLLGLLLLLPIPFTNYLFGLLLLIYVFALLERDGMLLLGAWILGLVAIVGFGVSLKELAQVALDWIGRLL
>NC_016147.2|WP_014160009.1|1068770_1070087_-|HlyC/CorC-family-transporter
MLELLIVGFLIVLNAFFALSEMSLMTSRKLRLKQMAIESRGARVALSLAEHPDNLLSTVQIGINLIGILGGVFGGDAIGAIIAGLLTGWFPGIEPYAGKIGVAVAVTLITIGYVIFGELIPKRLALTNPEKIATMVARPVHWLLRAARPIVFVLGAINRAVLRLLGIKDDARHAVTEEEIRMLVSESHEQGVIDDDERNMVNRVLRLGDRTADSLMTPRKRIVWLDVAAAYEENLETMRRSQYSRFPVYRGNDQDVVGILEVKSLLGRIADHSPELFTELREPLFVSESTHAMKLLEILREEQQSLALVVDEYGEIQGMVTLSDLMNAVVGRHHQLTENPDPNALVVTRDDGSLLIDGSLSNDDLREVLGGVALPDEHAHDYNTAAGMVIEHFGRIPHVGEHFDWAGWRIEVVDLDGARVDKLLLQKLSGEDDDEIVG
>NC_016147.2|WP_043290964.1|1070767_1071346_+|hypothetical-protein
MNTAPDPAELIKRYKENPHPRQGYRVTLAIADAPGPFASLEAYATYEIQGETCLLPRDNNFNGDQVAPKRRSLPVQFAKVSETEYVATVYTDRMLDADYYGRGVCHWESTGMHVRLKATGADGETEFIAGLSGEELSSGGRVSTYLQKRFYPIDSDIPNMRAFGQVDRNKMSKQLKDGDLFTLTLTSRKIEP
>NC_016147.2|WP_043290411.1|1071342_1072767_+|hypothetical-protein
MSLSSQRYADLMADSYMDPVRGADGRYENIVRHGVTYKVLEHVDRANGYQGTIYQRADTGDIVVAHRGTEFDRQPLQDGGLADGGMVFGRVNAQADAAIALTKLALDYAKKNEGGYVPVPQVTVTGHSLGGALAQVAAHHFGLYGEAFNPYGAVSLGMRIPEGGDRFVNHVMAADVVSAASGHYGQVRYYASEREIETLRHLGGYDNAPGLLDARNPLVPAIARLDSHHKDNFLDIDGQGRPDLSVLDDPRARARAVEYAPMIAKYRSDVLHMRGELTTLGQGGLLPDVMRTAIRDLQGTLEPGEPARREARSWGDQQAAVREVMERSEALGPEHWRTPLAVPAGGVRPADGMLHRQLLDGIAELGFDGARDGSADGPGSRVAAGLLLQCKQAGITHADHVLLGTGEQARVFAVQGALGDPAQLRTHVELSAALQLPVSESLEKMEQLGRQQALSAVQVQQMPQPEPSGPALSR
>NC_016147.2|WP_014160012.1|1072814_1073162_+|MGMT-family-protein
MFPDLDTPAARAAAILKEIRAVSAGHVAGYGEIARRAGMPGRARLVAQVLRKYGAPDLPWYRILRSDGSIAFPAGSSSYREQGQRLRAEGVRVVKGRVVGLKATASVDEQIWGPA
>NC_016147.2|WP_014160013.1|1073408_1074944_-|SpoVR-family-protein
MSKQAAGAATGPISTGADWTFELIQRYDEEIRKIAVDEYGLDCFPNQIEVIASEQMLDAYASLGLPISYPHWSYGKEFIRNEQNYRSGAQGLAYELVINSDPCIAYLMEENSMAMQALVIAHACYGHNSFFKGNYLFRQWTDPDAIVDYMVFARQYVMKCEERYGYSAVEDTLDSCHALRHYGVDRYRHPAPLSTEEERIRQLAREEFEWKQFAEIWRTVPTRGGDDGAPFGRQAIYPPEPQENLLYFIEKHAPKLQPWQRELVRIVRKTSQYFYPQGLTKVMNEGWSTFWHYTILNRLFDKRLVDDGFMLEWLSSHTNAVSQRGYDQRGYGGINPYALGFAMFSDIRRICESPTEEDREWFPDIAGSDWRKTLDFAMRNYKDESFIAQYLSPRLMREFHLFAIDDFEDSEVLTVDAIHNEQGYQHLRRLLANQYNRDVQLPDIQIVRYDINGDRSLTLQHRQYRGRPLAVDGAEVLKHVAQLWGFTVRLETVDADGQLVDEHEVRPGSLG
>NC_016147.2|WP_014160014.1|1074940_1076164_-|YeaH/YhbH-family-protein
MIIDRRLNDRNKSAVNRQRFIRRYKDQIRKSVSDLVSKRSITDMDRGGEVNIPARDISEPQFHHGEGGDREIVHPGNHSFQTGDRIKRPDGGGGEGSGGEGDEGQGSDSQDSFVFTLSRDEFMSLFFDDLELPRLARTMLGDIREAKWVRAGYMPRGVPTNLSVVRSLKNAMARRMALARPIERQIAALEAEQAPPETIEALKRRRASIPFLDDIDLRYRRRERVPQPISRAVMFCLMDVSASMSEQKKDLAKRFFTLLYLFLTRKYETVELVFIRHTDDAQEVEEDAFFHDTQSGGTVVLSALKLMHEIIVERYPSDQWNIYGAQVSDGDAFGADPEKSRAWLEEQLLPVVRYFAYIEVPDNIARVSPLAHAYRRIDAPHMAMASVAGRHEIYPVLRELFRRETTA
>NC_016147.2|WP_014160015.1|1076196_1078119_-|PrkA-family-serine-protein-kinase
MEIFEKFRDNFLKARDEEMSLQDYLMLCKRDPLAYASPAERMLAAIGEPEIIDTRNDARLSRIFSNRMIRRYPAFREFYGMEDVIAQIVSFFRHAAQGLEERKQVLYLLGPVGGGKSSIAERLKVLMESYPIYALKGSPINESPLGLFTPDRDGEMLEREFGIPRRVLTGIASPWAIKRLSEYEGDITQFKVVRVQPSVLRQVAITKTEPGDENNQDISTLVGKVDIRKLEHFGQDDPDAYSYSGGLCLANQGLLEFVEMFKAPIKMLHPLLTATQEGNFKGTEGFSAIPFQGVIMAHSNESEWQSFRNNKNNEAFLDRVYIVKVPYCLQVSEEVKIYRKLLQHSALSKAPCAPGTLEMMAQFSVLTRLKEPENSSIYSKMRVYDGESLKDTDPAAKSYQEYRDYAGVDEGMTGVSTRFAFKVLSAVFNYDQVEVAANPVHLMYVLEQRILREQLPEETQRRYLEYIKGWLAPRYAEFIGKEIQTAYLESYSEYGQNIFDRYVTFADYWIQNEDYRDAETGESLDRAALNSELEKIEKPAGIANPKDFRNEIVNFVLRARAQHNGHNPRWTSYEKLRHVIEKKMFSSTEELLPVISFNAKASVEDQRKHENFVGRMVSKGYTEKQVRLLSEWYLRVRKSA
>NC_016147.2|WP_014160017.1|1078864_1079557_+|rhomboid-family-intramembrane-serine-protease
MFPRLQPATQALLIANVAMFLLQMVLPDALMARLLLWPVGAGQVLPGAGFLPWQLVSAGFMHATFGHIFFNMLALWMFGSPLEAVWGARRFTTYYLVSLVGANVLQVIVGTLLLAQGQFPIPVLGASGAVFALLLGYGMLFPDQRMIVFPIPVPIKARTLVIIYGAMELFFAYTGRQPGVAHFVHLGGMLFGWLLIRYWRGQPPFGRGSGRGGRGGGNGRRRSTATFRVV
>NC_016147.2|WP_014160018.1|1079593_1079911_-|IS110-family-transposase
MSLTLVGIDVAKATLAVCVLPHQLHLTLPNTSAGHAQLLAPLKGHSVDNLLLEATGGYERALMRVLSKAGLPVTRINPRQVRQGRHHRLHAGAAHPPQRHGQRPN

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Crispr_ID: NC_016147_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_6

1479160-1479260

Orphan

Consensus_repeat	Method
TTGCCGTAGGGCGGGTCTCGACCCGCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016147_6

>merge|NC_016147|6|1479160-1479260|CRISPRCasFinder
TTGCCGTAGGGCGGGTCTCGACCCGCCGCTCTGCCGGCCGGTGCCGATTTCAGCGTCCTGATCGGGCTGGCGTTGCCGTAGGGCGGGTCTCGACCCGCCGC

>NC_016147|6|6|1479160-1479260|CRISPRCasFinder
TTGCCGTAGGGCGGGTCTCGACCCGCCGC	TCTGCCGGCCGGTGCCGATTTCAGCGTCCTGATCGGGCTGGCG
TTGCCGTAGGGCGGGTCTCGACCCGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_014160384.1\|1487629_1489210_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NC_016147.2\|WP_148268100.1\|1477143_1477323_-\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_147475058.1\|1482819_1483239_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014160370.1\|1471479_1473063_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_016147.2\|WP_014160377.1\|1480282_1481383_+\|ferredoxin-reductase	unknown	unknown	gnl\|CDD\|99812
NC_016147.2\|WP_043290452.1\|1469062_1469902_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182574
NC_016147.2\|WP_193384099.1\|1473064_1474591_+\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830
NC_016147.2\|WP_014160375.1\|1477321_1478962_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|183199
NC_016147.2\|WP_083833502.1\|1476310_1476964_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236428
NC_016147.2\|WP_014160383.1\|1486669_1487449_-\|ferredoxin--NADP-reductase	unknown	unknown	gnl\|CDD\|99792
NC_016147.2\|WP_014160382.1\|1486120_1486603_+\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|223463
NC_016147.2\|WP_014160381.1\|1483753_1485910_-\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341051
NC_016147.2\|WP_014160380.1\|1483318_1483696_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014160367.1\|1468109_1469060_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182646
NC_016147.2\|WP_043290451.1\|1466967_1468113_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NC_016147.2\|WP_014160376.1\|1479527_1480178_-\|HTH-type-transcriptional-repressor-FabR	unknown	unknown	gnl\|CDD\|236881
NC_016147.2\|WP_014160386.1\|1490227_1491133_-\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NC_016147.2\|WP_014160372.1\|1474878_1476240_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NC_016147.2\|WP_014160378.1\|1481382_1482540_+\|acyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|239583
NC_016147.2\|WP_083833501.1\|1470067_1471483_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_014160384.1\|1487629_1489210_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.74601e-90
NC_016147.2\|WP_014160370.1\|1471479_1473063_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.64443e-100
NC_016147.2\|WP_014160377.1\|1480282_1481383_+\|ferredoxin-reductase	gnl\|CDD\|99812	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	1.48585e-93
NC_016147.2\|WP_043290452.1\|1469062_1469902_+\|ABC-transporter-permease-subunit	gnl\|CDD\|182574	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	8.2926e-110
NC_016147.2\|WP_193384099.1\|1473064_1474591_+\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	1.40947e-72
NC_016147.2\|WP_014160375.1\|1477321_1478962_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|183199	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.	6.12604e-158
NC_016147.2\|WP_083833502.1\|1476310_1476964_-\|hypothetical-protein	gnl\|CDD\|236428	PRK09247, PRK09247, ATP-dependent DNA ligase; Validated.	3.35735e-60
NC_016147.2\|WP_014160383.1\|1486669_1487449_-\|ferredoxin--NADP-reductase	gnl\|CDD\|99792	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	1.28241e-113
NC_016147.2\|WP_014160382.1\|1486120_1486603_+\|glutathione-peroxidase	gnl\|CDD\|223463	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones].	6.22679e-92
NC_016147.2\|WP_014160381.1\|1483753_1485910_-\|M3-family-metallopeptidase	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NC_016147.2\|WP_014160367.1\|1468109_1469060_+\|ABC-transporter-permease-subunit	gnl\|CDD\|182646	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional.	2.54242e-124
NC_016147.2\|WP_043290451.1\|1466967_1468113_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	1.40784e-174
NC_016147.2\|WP_014160376.1\|1479527_1480178_-\|HTH-type-transcriptional-repressor-FabR	gnl\|CDD\|236881	PRK11202, PRK11202, HTH-type transcriptional repressor FabR.	7.02362e-54
NC_016147.2\|WP_014160386.1\|1490227_1491133_-\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	1.34657e-65
NC_016147.2\|WP_014160372.1\|1474878_1476240_+\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NC_016147.2\|WP_014160378.1\|1481382_1482540_+\|acyl-CoA-desaturase	gnl\|CDD\|239583	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.	1.50871e-39
NC_016147.2\|WP_083833501.1\|1470067_1471483_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	2.52198e-92

>NC_016147.2|WP_014160375.1|1477321_1478962_+|acyl-CoA-dehydrogenase-family-protein
MDTPSTRSFATHVVDNQPPEFAPRDLHADDAVLREGLARAGAAAFDAALAGYGALAGSTLYALGFEANGDKPRLKTHDRFGHRIDLVEFHPAYHQLMQAAKEHGVAGLSWHAPQPGAHVARAALSYLHHQAEAGTSCPLTMTHAAVPVLRREPALQAWADKAAAPHYDPRDVPIADKAGITVGMGMTEKQGGSDVRGNTTCATATSVEGEYTLVGHKWFFSAPMSDGWLVLAQAPGGLTCFLLPRRLADGQKNAFQLMRLKDKLGDWANASGEVEFTGAWARRVGAEGRGVATILQMVMLTRLDCMLAATAEMRMALAQAVHHTRHRSTFGKALVEHALMRNVLADLSLEWEAALALCLRVAAAVDRAPTAPAEAALARVATAIGKYWICRRAPAFVNEAQECLGGAGYVEESILPRLFRQSPLNGIWEGSGNIQCLDVLRALAKEPECGQVLLAELAAARGLDHAYDRQFEVVAAQLAAGHTVEAGARLLVEHLALLLQASVLLRAGSPAAELFCRSRLGGQHGLALGTLPAGVDFSVLIGRALP
>NC_016147.2|WP_148268100.1|1477143_1477323_-|hypothetical-protein
MGPPPGLRLCRKLLTGVDPPCGLADGQVGAHDNTEAIIRVMNEAGIAAKAFRTDGGNEK
>NC_016147.2|WP_083833502.1|1476310_1476964_-|hypothetical-protein
MQGAGRKPATLDKRAALIAYFRHAPPRNAVWAPYLLSGGKVTGARRKIAATGELRAWIAQESATPDWLVDASHAHVGELTEMLALLLGDPGAPQPDIGLAEWIEQRLLPVANKDQALRRAVVVDAWRALPYGQRLVFNKLLTGSLRVGVSQRLVQQALAEMSDIDIARIAQRMPGTWTPSVEFLQERTGRALLAALLDAHDDPRIVISQQMQAAAGR
>NC_016147.2|WP_014160372.1|1474878_1476240_+|NAD-dependent-succinate-semialdehyde-dehydrogenase
MITETPNPATGQVEHRQELMGANTVEAILHAAQTAFPEWAQRSLEQRAGVLHRVGEVLRERREAIAQLMTAEMGKLKGEALAEVDKCAGACDYYADHAAGYLQPEPIKTEARASYVRYEPIGCVFAVMPWNFPIWQVFRFLAPTLMVGNTALLKHAVNVPRCADAIADALRAAGVPEGVFGVLHIDNDQAAEVIRDPRIAAVTLTGSERAGKSIAATAGSVLKKCVMELGGSDAFVVLDDADLDKTVAAAVKGRFDNAGQTCIAAKRFIVVDAIADAFVQRFVEAAGKLQTGDPNDAATTLAPMARQDLRDALHRQVASSVADGARVLLGGKPGPGHADYPATILDGVRPGMAAYTEELFGPVASIVRVKDQAEAVRVANDTSFGLGGSVWTSDVERGERVAQQLQCGSAFVNALVKSDVRLPFGGTKRSGHGRELARHGIQEFTNIKTVYVA
>NC_016147.2|WP_193384099.1|1473064_1474591_+|efflux-transporter-outer-membrane-subunit
MPGVRSALLALTALLLAGCVLGPNYVRPEVAPAAVNAPQLHRAANAGVVSALPPSRWWLQLNDPQLTWLIDTALAHSPNLRAADARVRAARGLAAQRRAERLPQVGALGAYARVDSPDSAEDASRDAAEGLAQATDPATGTAIRQASENLELDEDLYVAGFDASWELDFFGRRRRALEGAAAQAEAAQAQLADAQVRLAAEIGQVYVNYRGLQQRIDLGQGNVVSAQRSLELTQQRRSRGAASDLQVERMRGQLQQQQAMLLPLQAQREAALDQLALMIGQVPGALDARLAAQQPIPQLPAQVRVDDPAALIRRRPDVRQAERELAASNAQIGQALSGYFPQVTLVGNYVAVGTSPGELGGDSTATLLAPMLRWSIFDFGRIKAQVAQARAGTEARLAAYENTVLAALQDANTALSNLGSARRQALVAQQAQTSADRASELMQQRNHAGASSLIDLLDVQRQQLSATDRAVQAQVQLVVDFIALQKSLGLGWQDAPVPGAAQPDTASR
>NC_016147.2|WP_014160370.1|1471479_1473063_+|multidrug-efflux-MFS-transporter
MSATGASAGGRAQSGGAQKADTGAWLAVAAGTIGSFMATLDISIVNAALPTIQGEVGASGTEGTWISTAYLVSEIVMIPLTGWFVRTLGLRNFLLICAVMFTAFSVMCGLATSLPMMIIGRVGQGFAGGALIPTALTIVATRLPPSQQTLGTALFGMTVIMGPVIGPLLGGWLTENVSWHYAFFINVPVCLGLLALLLLGLEHEQANWAGLLEADWLGIFGLTAGLGALTVVLEDGQRERWFESTFIVWLSALAAVGLAALLLSQFISREPVIQLKVLLNRSFGAVFLMILAVGMILFGVMYMIPQFLAMVSGYNTEQSGYVLLLAGLPTVLLMPFMPRLLQTVDVRVLVISGLLCFGAACFINIDLTAESVGTDFVAGQLLQGCGLALAMLSLNQAAISAVPTELAGDASGLFNAARNLGGSIGLALISTFQDRRLTYHTQVLGSATTANSPLGQDYMQQLSGALQGSGADAPMQAIGAFAQTVQLQALVMTYNDLFWIFGVIVACSIPLAFLLKPLPKGAHLAMH
>NC_016147.2|WP_083833501.1|1470067_1471483_+|HlyD-family-secretion-protein
MDRTAGFAARPAKVRQAPSIRRRICTALRPASRPPGAWCRSGPDPSHPAGPAALSQHEDDDHNDQARARDKDRGKDQGRDQGKDNGQGGADGQAGGADKDGPGKPSPLKNPKVKWTLIVAGILALVLLIAWLVYHLLVGRYLQETNDAYLQADSVAVAPRVNGYVTAIYVQDHAWVKAGQPLLQIDDRTYRAQLEQAQAAVALRQADIEAAQAGLDGYRAQLAQSRTQVTSAAVQLKFANAEVARFAPLAASGADTHEHQEQLQQQRDQAKAQYEAAMAQVTSAQSQIAAGEAQLEQARAGLKQAQANVDQAQVAVEDTHLKAAIDGRVGDKTVQVGQFLGAGTRTMTIVPIHALYLTANYKETQVGLMREGQPVEIEVDALPGVSLQGHVQSLSPGTGAQFALLPPENATGNFTKVVQRVPVRIRVEAGPEARKVLVPGMSVIATVDTRSARDARERTEDEAERQDAARP
>NC_016147.2|WP_043290452.1|1469062_1469902_+|ABC-transporter-permease-subunit
MVGRARWPSWIILGLGFSFLYLPVLLLMLWSVNRSRLATVWAGFSFKWYGELLRDASMLEAAWVSLRIAFWTACASVVLGTLAALVMTRMRRFPGKTLFGGLITAPLVMPDVIIGLSMLLMFVSLGDLFHFQPKGMLSIWIAHTTFALAFVTVVVSSRMAELDKSLEEAAMDLGANRIKVFFLITLPIIAPALVSGWLLAFTLSLDDVVIASFVSGPSSTTLPVKVFSSVRLGLSPKINALATLMIAIVSVCAFIGWWLMSRSEKRRRRDIQLALQEHD
>NC_016147.2|WP_014160367.1|1468109_1469060_+|ABC-transporter-permease-subunit
MSAASVFHALRKLTPGPRWGVIGIPYLWMLVFFAIPFLIVLKISFARLAIAMPPYTPILEIDGAEVALTLNLSNFLQLGALQNGYIAAYWSSIEIAAIATLLTLLVGYPMAYVIARLPTSSRNTAMMLVVLPSWTSFLIRVYAWIGILKSSGPVGRLLERIGVIDALQSLGWIEGRQILYTPLATYIGIVYCYLPFMVLPLYTNLVKHDGHLLEAAYDLGARPWKAFLRITLPLSRAGIIAGCMLVMIPAVGEFVIPELLGGPDTLMIGRVLWNEFFANRDWPLASAVAIAMLLLLMIPIVIFNRVQQRQIEGRLT
>NC_016147.2|WP_043290451.1|1466967_1468113_+|polyamine-ABC-transporter-ATP-binding-protein
MAAVEQHAVSGHGPLHLPGAEGYLRIENVRKEFDGFVALDEITLSIRKGEIFALLGGSGCGKSTLLRCLGGFEHPTAGHIFLDGQALNGLPPYERPINMMFQSYALFPHMTVEQNIAFGLKQDRMSRADIARRVEEMLALVQLNKLARRKPHQLSGGQQQRVALARSLAKGPKLLLLDEPMGALDKKLRTLMQLELVSIIEKTGVTCVMVTHDQEEAMTMATRIALMDAGRIRQVGPPDEIYEQPATRFAASFVGSVNMIDAVIDQDEPEFVTLRSPQLETAIYIGHGISGFEGQQVSFAVRPEKLGIGKDEPAQAHNKARGVIEDIAYFGSHSVYHVKLATGFTIMANFANVQRWASEGMTWGDTVWVWWGDNDGVVLTQ
>NC_016147.2|WP_014160376.1|1479527_1480178_-|HTH-type-transcriptional-repressor-FabR
MRAPEPAIDTPIEDAVPVRRAGISRQDLLAAALRLVGPHRSLSSLSLREVAREAGIAPNSFYRQFRDMDELAVALIDLAGRSLRQIIGQARRRALRAERSVIRTSVETFMEQLRADDKLLHVLLREGMVGSDAFKAAVERELSYFEDELKVDLIRLAAADGATLHEPALVSKAITRLVFAAGATAMDLPPERDPELVEQLSTMLRMILTGSRAMAA
>NC_016147.2|WP_014160377.1|1480282_1481383_+|ferredoxin-reductase
MTAVLPRRTASPFSRVLRAASALVVQPAVFDFWATRVNPLWTWERPLARLRERRQAAADAVTLVLQTNRHFAGVRPGQHVNLGVEVDGARLSRSYSPSAVAGDRIEITVREVAGGRVSRHLCRDARVGEVFDLGAAFGEMTLPPVVQGRWLFLAAGSGITPLMAMLRQLDAAGMPVQMDLMYWARTRAQVCFADELQALAARHAGFRLHLALTGQDDGRGGLAPRIGQTDLATRVPQLAQCQVYACGPHGFVQAARQALQGRVARFDAEAFTPPQAQPGQAGTAEVTLSRSRRTLTVPRDRPLLQALEEQGLRPASGCRMGICNTCACGKRQGITRDIQTNARSAEPDATVRICINAAASDLTLDL
>NC_016147.2|WP_014160378.1|1481382_1482540_+|acyl-CoA-desaturase
MAHKNRPLSQDELQQFGAELDALRARTLAQLGAPDARYIRGAVSAVRWTGALGRILLFVGAFVPMLLWPACIAGTLLLALSKILENMTVGHNVIHGQYDWMGDRQLHSRSYEWDIVATSENWRRTHNFRHHTYTNVRGLDDDIGYGLLRIFPEQKWRPFYLLQPPIAVVFCLLFEWGVAIQDLRLGRFLAGKMSFRQLRAQLSPLGRKIGRQVLKDYVIFPALAGPFFLPVLLGNIAANVLRSIWTYVVIFCGHFTAEVETFPKDVVRKESRGHWYLRQLRGSSNISGGRVIDVLTGDLSHQIEHHFFPDIPANRYADMAVEVRQICKRYGQHYNTGSLFRQFGQVAWRIVRHAFPSRPRRQVALTRKPAAARELGANQAAQQAG
>NC_016147.2|WP_147475058.1|1482819_1483239_+|hypothetical-protein
MKASVISLSAALPLLAVFAAGAQQLRQPTIAPAQSGARTLPQPASPQSRSVASDPGQRSQAPLISPKGPATDANRPVQPSTAAPATPAASARVVDPQGRPISGAVPMGTNQVMDPKTGKVYTTMPHGDGQRIIQPTPKP
>NC_016147.2|WP_014160380.1|1483318_1483696_+|hypothetical-protein
MKTLLICAFSALLLLPTASGAQQLGQPRAAPSVRQDLSERADTTPRVASDTGITPVRVEQPLSIQPDPPTRPVRVLDARGREIPGAVQLGPNRVLDPRDGRIHMTMPVGDGQRIIEFPKNSDPPG
>NC_016147.2|WP_014160381.1|1483753_1485910_-|M3-family-metallopeptidase
MTTRLALALALALGMPMSAHAQTPASAASQPANPFFAQSPLPLHYPQFDRITDADFAPAFDAGMAAQLEEIQAIADNPARPTFDNTIVAMEKSGQLLERASTVFFNLVGTDTNPVREKLRSDYSVRFAAHRDAISLNGKLFARIQALYDTRTELGLDPQGVRLIEKYHTDFVRDGAKLSDADKTKLKEMNAELAALATQFSQNVLKEVNDSAVVVDDVTQLAGLSESEISTAADEANSRNLPGKYVITLLNTTGQPPLTNLTNRDLREKIFKASINRGSRGNAYDNTALVSRIMTLRAQKAKMLGYPTYAAYSLEDQTAKTPQAVNDMLGKLAPAAVANAKREAADLQAMIDAEQKAAGKPSFALAAWDWAFYSEKVRQAKYNFDESQLKPYFEMKNVLENGVFYAAGQEYGLTFKARTDLPKYHPDTYVYDVFDADGSQLAIFIFDPYARASKRGGAWMNAYVPQSGLTGDKPVVANHLNIPKPPAGQPTLLTWDEVTTAFHEFGHALHGMFSNVQYPYFSGTSVPRDFVEFPSQVNEMWADYPSVLKHYARHHQSGEAMPQELLDKVLAAAKFNQGFATTEYLGAAMLDQRWHQISIDQVPDAAGVMAFEARALAADGIAYPPVPPRYRTPYFSHIMGGYSAGYYAYIWSEVLDANTQQWFEQHGGLSRANGDRFRKLLLSQGGSQDAMKLFQDFAGHAPQIEPLLEKRGLETRLD
>NC_016147.2|WP_014160382.1|1486120_1486603_+|glutathione-peroxidase
MRGVFEFSAIDINGHEQPLSDWAGSVLLIVNVASRCSFTPQYGGLEVLWQQYRDRGLVVLGFPCDQFGHQEPGDQDQIRAFCSLNYAVSFPMFAKVEVNGERAHPLWQRLKRERPGLLGTQRIKWNFTKFLVGRNGQVLRRYGPRRAPASLAADIGRALG
>NC_016147.2|WP_014160383.1|1486669_1487449_-|ferredoxin--NADP-reductase
MSSAYGTETVLEVHHWTDDYFSFTTTRNDGFRFENGQFVMIGLDAQPRPLLRAYSIASANWEEQLEFFSIKVPGGPLTSRLQHLQPGDSVLVGKKPTGTLLISDLQPGRNLYLLGTGTGLAPWLSVSKDPQTYERFDKVIVAHGVRFEKDLAYRDEFEKVLPRHEFLGPMLRDKLLYYPAVTREPFRNHGRLTELLDSGQMARSLGLEPIDPARDRFMICGSPQMLADLRALLDSRGFQASPRIGSPGHYVFERAFVEK
>NC_016147.2|WP_014160384.1|1487629_1489210_-|rRNA-pseudouridine-synthase
MSDTPRSKLSLKRDAAAIPEVRLQERLHKVLAQAGLGSRRALEQRIADGLIKVNGEVAQTGMSIGSGDRVELDGRTFVASALTEPARVLIYNKPEGEVTTREDPEGRPTVFESLPAIKGARWIAIGRLDINTTGLLLLTTDGELANAMMHPSHEVSREYVVRVRAPEGQDTVSDALVERLRNGVELEDGPAKFDEIERIGGTDSHDWYRVALKEGRNREVRRLWESQGCQVSRLKRTRYGAIELPQPLLRGQSQELSDGQVQALRKSLKLEDGAPAALTLQPVIGQRRASRTVVNARGAGNAYVNGHTTAADEARELRRFDHVREDRGRGGRGKPSFKGGLTVTGEAAANQSQKPFKTRAAKGPKPLPDGNPAAFRSWYVPEGVDTGPTGHRNAGPGGPKKPYGGKPGGPRRGGPGAGLGGSGPYGGFGEGARGQGVGQGAGQGQQRKARPYGHPGNAPSFPSDHATPGAYNPYGQRQGRPGGGNRPAGGPRPGGAGPRPGANRGPGGKPGGPRGGSRGPRGGGNG
>NC_016147.2|WP_014160386.1|1490227_1491133_-|segregation/condensation-protein-A
MTSQPAPGATASTETTHNRQQHQMPLALVHGQPVLQIPQDLYIPPDALEVILDAFEGPLDLLLYLIRRQNLDILDIPVLEITRQYVDYINVMQELRFELAAEYLVMAAILAEIKSRMLLPRPPAVEAEEGDPRAELVRRLQEYERFKQAAEDIDALPRQDRDTAPAHAHVPDRAAIKVLPDVELKEMLLALHEVLRRAELFTGHAIKREALSVRQRMGELLSRLEDGRFHRFETMFTVEEGRLGVLVTFLAVLELAKEQLLDIVQEAALAPIYVKSLALGNTNEPLQFSSTFDDSDAANDA

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Crispr_ID: NC_016147_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_7

1699939-1700095

Orphan

Consensus_repeat	Method
ATGGCGGGTCTTGACCCGCCGT	CRT
GGCGGGTCTTGACCCGCCGTTACCGGTTCATCCGGCATGGCAATGGCGGGTC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_016147_7

>merge|NC_016147|7|1699939-1700095|CRT,CRISPRCasFinder
AGGGCGGGTCTTGACCCGCCGTTACCGGTTCATCCGGCATGGCAATGGCGGGTCTTGACCCGCCGTCGCAGGGCCGGATCCCGGATTCCGGATGGCGGGTCTTGACCCGCCGTTACCGGTTCATCCGGCATGGCAATGGCGGGTCAAGACCCGCCCT

>NC_016147|7|1|1699939-1700095|CRT
AGGGCGGGTCTTGACCCGCCGT	TACCGGTTCATCCGGCATGGCA
ATGGCGGGTCTTGACCCGCCGT	CGCAGGGCCGGATCCCGGATTCCGG
ATGGCGGGTCTTGACCCGCCGT	TACCGGTTCATCCGGCATGGCA
ATGGCGGGTCAAGACCCGCCCT

>NC_016147|7|7|1699941-1700083|CRISPRCasFinder
GGCGGGTCTTGACCCGCCGTTACCGGTTCATCCGGCATGGCAATGGCGGGTC	TTGACCCGCCGTCGCAGGGCCGGATCCCGGATTCCGGAT
GGCGGGTCTTGACCCGCCGTTACCGGTTCATCCGGCATGGCAATGGCGGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_014160556.1\|1688300_1690787_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173812
NC_016147.2\|WP_014160560.1\|1692173_1692569_-\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|225465
NC_016147.2\|WP_043291086.1\|1693155_1694835_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NC_016147.2\|WP_014160577.1\|1711382_1712726_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|176890
NC_016147.2\|WP_014160570.1\|1702500_1703718_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NC_016147.2\|WP_014160574.1\|1707870_1708788_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226706
NC_016147.2\|WP_014160566.1\|1696715_1698638_+\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NC_016147.2\|WP_014160557.1\|1690893_1691388_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NC_016147.2\|WP_014160572.1\|1704141_1707384_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_016147.2\|WP_014160564.1\|1696040_1696562_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237625
NC_016147.2\|WP_014160558.1\|1691457_1691886_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	unknown	unknown	gnl\|CDD\|176855
NC_016147.2\|WP_014160559.1\|1691892_1692156_+\|RnfH-family-protein	unknown	unknown	gnl\|CDD\|234982
NC_016147.2\|WP_014160569.1\|1701603_1702317_+\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_016147.2\|WP_014160568.1\|1700132_1701317_+\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|181561
NC_016147.2\|WP_014160571.1\|1703714_1704140_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NC_016147.2\|WP_014160573.1\|1707380_1707857_+\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NC_016147.2\|WP_014160561.1\|1692684_1693089_+\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236527
NC_016147.2\|WP_014160575.1\|1708784_1710605_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NC_016147.2\|WP_014160578.1\|1713226_1714303_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
NC_016147.2\|WP_014160563.1\|1694924_1695995_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_014160556.1\|1688300_1690787_+\|S8-family-serine-peptidase	gnl\|CDD\|173812	cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.47748e-106
NC_016147.2\|WP_014160560.1\|1692173_1692569_-\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|225465	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane].	3.52869e-28
NC_016147.2\|WP_043291086.1\|1693155_1694835_-\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NC_016147.2\|WP_014160577.1\|1711382_1712726_-\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|176890	cd08881, RHO_alpha_C_NDO-like, C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-terminal domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. Proteins belonging to this subgroup include the terminal oxygenase alpha subunits of biphenyl dioxygenase, cumene dioxygenase from Pseudomonas fluorescens IP01, ethylbenzene dioxygenase, naphthalene 1,2-dioxygenase, nitrobenzene dioxygenase from Comamonas sp. strain JS765, toluene 2,3-dioxygenase from Pseudomonas putida F1, dioxin dioxygenase of Sphingomonas sp. Strain RW1, and the polycyclic aromatic hydrocarbons (PAHs)degrading ring-hydroxylating dioxygenase from Sphingomonas CHY-1. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket.	3.53171e-91
NC_016147.2\|WP_014160570.1\|1702500_1703718_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NC_016147.2\|WP_014160574.1\|1707870_1708788_+\|hypothetical-protein	gnl\|CDD\|226706	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown].	1.77299e-60
NC_016147.2\|WP_014160566.1\|1696715_1698638_+\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_016147.2\|WP_014160557.1\|1690893_1691388_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	1.1022e-82
NC_016147.2\|WP_014160572.1\|1704141_1707384_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_016147.2\|WP_014160564.1\|1696040_1696562_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237625	PRK14147, PRK14147, heat shock protein GrpE; Provisional.	1.35955e-81
NC_016147.2\|WP_014160558.1\|1691457_1691886_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	gnl\|CDD\|176855	cd07813, COQ10p_like, Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	6.68789e-58
NC_016147.2\|WP_014160559.1\|1691892_1692156_+\|RnfH-family-protein	gnl\|CDD\|234982	PRK01777, PRK01777, RnfH family protein.	7.56855e-27
NC_016147.2\|WP_014160569.1\|1701603_1702317_+\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	4.93123e-91
NC_016147.2\|WP_014160568.1\|1700132_1701317_+\|prephenate-dehydrogenase	gnl\|CDD\|181561	PRK08818, PRK08818, prephenate dehydrogenase; Provisional.	0
NC_016147.2\|WP_014160571.1\|1703714_1704140_+\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	2.04345e-47
NC_016147.2\|WP_014160573.1\|1707380_1707857_+\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	9.06828e-82
NC_016147.2\|WP_014160561.1\|1692684_1693089_+\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|236527	PRK09462, fur, ferric uptake regulator; Provisional.	7.99839e-48
NC_016147.2\|WP_014160575.1\|1708784_1710605_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NC_016147.2\|WP_014160578.1\|1713226_1714303_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	3.20166e-63
NC_016147.2\|WP_014160563.1\|1694924_1695995_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.26735e-137

>NC_016147.2|WP_014160566.1|1696715_1698638_+|molecular-chaperone-DnaK
MGKIIGIDLGTTNSCVAVMEGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKFTDAEVKKDLDLVPYSIVAHDNGDAWVATADGKKMAPQEISARVLEKMKKTAEAYLGETVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKGNAQDRKIAVYDLGGGTFDVSIIEIANVDGEKQFEVLATNGDTFLGGEDFDARVIDYLVDEFNKDQGIDLRKDPLALQRLKDAAERAKIELSSSQQTEVNLPYVTADASGPKHLNIKLTRAKLEALVDDLIKKSIEPCRTALNDAGLRASDIGEVILVGGQTRMPKVQAAVTEFFGKEPRKDVNPDEAVALGAAIQGGVLGGDVKDVLLLDVTPLSLGIETLGGVFTKIIEKNTTIPTKASQTFSTAEDNQSAVTVHVLQGEREQARFNKSLARFDLSGIEPAPRGLPQVEVSFDIDANGILHVSAKDKKTNKEQKVEIKAGSGLSDEEIQRMVADAEAHRDEDRKFHELVAVRNQADALIHSTRTAITEHGSKVGGEVIGRVEAALADLETAMKGDDKAQIEARSKALEEAGQSLYAAASAGAQGAGPEAGAQQAHRAADDVVDAEFTEVKDDKK
>NC_016147.2|WP_014160564.1|1696040_1696562_+|nucleotide-exchange-factor-GrpE
MTASEHPASHDAAADAPQDAQAALQAEIETLRNELDQLRAQVLLERADLENQRKRMARDVDNARKFANEKLLGQLMPVFDSLDAGLAAAGAEPSPLREGLELTLKQLLKVASDNGLTVLDPTGQPFNPDHHQAISQAPAQGAAPGSVLQVFQKGYLLNDRLLRPALVVVAQHD
>NC_016147.2|WP_014160563.1|1694924_1695995_+|heat-inducible-transcriptional-repressor-HrcA
MNRRSPDLDARARQLLRTLIARYIQDGEPVGSRTLARHSGLDVSAATIRNILADLEDAGLLSSPHTSAGRIPTAQGYRVFVDSLVQMQPLAERDLARLRAELPAGTGTQALLGNASELLSAMTHFVGVVGAPRREQFAFRHIDFVPLDGRRVLAILVFADNEVQNRVIEPRRTYDPSELERVANYLNAHFAGRPIAEIRATLLRELRAARSEMEGLLAHTVELAEHALTPSDDDMVLAGQTRLMAVQDLSDLDRLRELFETFARKREILQLLERTISAPGVRIFIGEETGLAPLDGVSLVAAPYRASGQVLGVLGVIGPTRMAYQTVIPVVQAAADALGAAMLRPGDDLNPSAPAP
>NC_016147.2|WP_043291086.1|1693155_1694835_-|DNA-repair-protein-RecN
MLRHLTIKDFAVVRATDMEFGPGMTVISGETGAGKSLLVDALGFLSGLRADAGMVRHGAQRAELSAEFELAPKAPALAWLAEHALDEAGACQLRRVLRADGGSRSWINGRSVTLSQLAELAGLLVEIHGQHEHQALLSKASQLALLDAFAGSQAQLAQVRKAAAAWSLLLAERDRLTAQGDVSDRLNYLQHQLDELRREELAPAAIQALVATHRRQAHATTLIQACDDGLARLSGEDGPSAGRLLLQTRSELARVVAHEPRLGEVETLLENAQIQLDEALAVLSQVRDTLDVDPDQFEHAERRLTRLHDLARKHRVTPEQLDEVAARIEQELDGLRGAGERLAGLNTEIEAAGHAWRSAAQALTRVRTRAAATLASKTSALIAELGMGGGRLEVQFEPHVVDRPDPQGAERIELLVAANAGQPPRPLRKVASGGELSRISLAIEVAALGADAVPTMIFDEVDSGIGGAVADIVGRKLRDLGRERQVLCVTHLPQVAAQGHAHYRVSKAPVEGMTQSSVEALDAGARKEELARMLGGVHVSAEARAAAGKLLASVEAGSP
>NC_016147.2|WP_014160561.1|1692684_1693089_+|ferric-iron-uptake-transcriptional-regulator
MESQDLRNVGLKVTHPRLRILALLEEARPRHMTAEDIYRALIGVGDEIGLATVYRVLTQFEAAGLVLKHNFEGGQAVYELDRGEHHDHMVDIESGKVIEFSSPEIEVLQHRIAAEHGYEIEEHALVLYVRKKRQ
>NC_016147.2|WP_014160560.1|1692173_1692569_-|outer-membrane-protein-assembly-factor-BamE
MRNYLLIAALGLATSGCGIIYKQPIYQGNLIDQSDVEKLALGQNKQQVIALLGTPSIADPFHAQRWDYAATQRTDRLGRVQMKNFTVYFDNDQVTRWEGDYFPNQDEELARNSVRQFGPNLAKDKKKGRGG
>NC_016147.2|WP_014160559.1|1691892_1692156_+|RnfH-family-protein
MKIEVVLAWPRRYLSVRVELPQGACVGDALKAAAIEQAGQAAGVSVFGVQATSRTLLHEGDRVELLRPLLIDPKQARRRRAAGSSGS
>NC_016147.2|WP_014160558.1|1691457_1691886_+|type-II-toxin-antitoxin-system-RatA-family-toxin
MPTIRRSALVEHPPEYMFDLVNDVQAYPRRFSWCDKAEIIESDQARMVARLDLGLGALRTWFTTENTLQRPGRIDMNLKDGPFRKLHGLWEFQALGEGVSKVSLTLDFEPSNRLLRPAFSLGFQGLADRMVDDFVRTADRGD
>NC_016147.2|WP_014160557.1|1690893_1691388_-|SsrA-binding-protein-SmpB
MAKKSDKDKANGTGTIALNKRARHEYHLEERFEAGLALQGWELKSIRAGRANIGESYAVVRNGELFLFGAQFTPLIQASTHVATDDRRTRKLLLHRREIDVLVGKVERDGYTLIPTAMYWKGNKVKLELALAKGKQAHDKRASEKDREWARDKQRLMRQHNRDA
>NC_016147.2|WP_014160556.1|1688300_1690787_+|S8-family-serine-peptidase
MASKRPARTRATSPRTPPAKAQAPARKAAKKAARPVAKAAAHALSDAGALACSGYMSGAQGQAMTVVYIHGIGNKPPPEVLRCQWDQVLFGRAMGERTRMAYWVDRQRYPVAEAGTCADRDQGPTISRAEQHMLSSFGLAPAGGDLDALVQALADTPQQRAWLEELLDQVQASAAPDTAPGPGARSVWSGLNEILLRLVSAALLQDVHDFFFVPARREAMERSLRERLMAGGGPFVVVAHSQGSMIAYEVLRKLQAAQCEVTLLLTIGSPLGLPAVRSMFKQDIGKEKLPFPPCVRAWYNVADRLDPVALDGDLSDDIQGANGRFSTYTAPGINPDGPRNPHSGSGYLSIAQVRQHVRAVVGPGFDQPVTSTVVLKDLSDRMEAHGSAMRHEVLIELDRLPAGRQPAQARQALLDYLRQLAAPDLGLQGAALDEAIMLEDTMERFISAQLTRFEIESLRNQYQALGFKRLWRDAGKRALLDRSRVVIQADAAQNAYHALGQGIGWAVLDTGIAAGHPHFYQAGARDVVVAQWDCTVRGRPRALKRGDGRAFTHLDRAGHGTHVAGIIAGHCSAPLPGGDGKTRVDFTAIAPQAQLYGFKVLDDEGNGRDSWIIKAIQQVADINDQAGQLVIHGVNLSLGGWFDAESYGCGFTPLCSELRRLWRQGVVVVLAAGNEGLAWLLQQDGMAVPANMDMTIGDPANLEEAIAVGSVHKTNPRSYGVSYFSSKGPTADGRCKPDVVAPGEKIVSAHFGYKTRDPKTWMVEMSGTSMAAPHVSGLIAGFLSVRREYIGFPDRIKQVLMSHCTDIGRDRYMQGRGIPNLVRMLAET
>NC_016147.2|WP_014160568.1|1700132_1701317_+|prephenate-dehydrogenase
MTPGFPGRFFLHTSSVPVIGIVGSAGGYGRWLTRFLQHQMGLAVIGHDPADPRSHSPDALIDQAQVLVFSTPIRLTAALIGQYAQLAAGRERGQLWLDLTSIKTEPVAAMLQSQAEVVGLHPMCAPPKSPTLKGRPMVVCEARLDAWRPWLQTLLDALEAQCVRTTPEHHDQVMALVQAMVHAGHLAQASALRRHADRVGSLAELFPYRSASFEMDGAMIARILSLNPAIYEDIQFGNPHVPAVLDTLVQELSALRDLVSAGDEAARATFRQSVLAANKAAIGAEALADGNYRFERIGYLLADLAEPRSLSVHLPLDQPGSLRALLHVFERHGVSISSLHSLRNPAGEVHFRLGFDSGTDLQALARAAAQVDASGIGRVLDGDLPTTPSTVANL
>NC_016147.2|WP_014160569.1|1701603_1702317_+|4-hydroxy-tetrahydrodipicolinate-reductase
MDDVLRILIHGASGRMGQALLRLAAENPALGVVAAVTHRRPVARVVQGVAHFAASELHGVPAFDVAIDFSLPAGFDPILALCLERKVALVSGTTGLSEAQRGALQAAADSIPVVWASNFSLGVAVLAELVERAAAALQGWDCDIVEAHHVHKQDAPSGTALTLGQGAQAAGAAPRYASLRAGDIVGEHLVQFTGPGERLELIHRASNRDIFARGALHAAQRLAGKSPGLYRVRDLLD
>NC_016147.2|WP_014160570.1|1702500_1703718_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MTQSAILVLEDGTVFEGQSVGAHGLSIGEVVFNTAMTGYQEIVTDPSYARQLVTLTYPHIGNTGCTDQDDEAGKVWSAGLIVRDVPRRPSSWRSQVPLQDWLKARGVIAISGIDTRKLTRILREHGAQNGALMAGQIDVEQALEAARKFPGLKGMDLAKVVSTQQAYTWSEGQLDLDTNKFVGLGAKRIEKSADGCAGSRAGRTYKVVAYDYGVKRNILRMLAERGCEVTVVPAQTPAAEVLALKPDGVFLSNGPGDPQPCDYAIAAIKELVEKKIPIFGICLGHQLLALAAGARTVKMGHGHHGANHPVIDLDTGRVMITSQNHGFAVDQASVPANVRVTHRSLFDGTNQGIELTDAPAFSFQGHPEASPGPKDVSPLFDRFVSMLGAKSRDPGPGTRDRGEAT
>NC_016147.2|WP_014160571.1|1703714_1704140_+|four-helix-bundle-protein
MTASHFRELEVWNLAMDLAQESYRVASAFPRDERYGLTSQLQRAAVSVPSNIAEGNARGSTRDYARFVSMATGSCAELQTQLLLAERLGLGVRSEVAATLLLCERVSQMLSRLQQSLQRRLESGTRVPGPGSRISETAEDY
>NC_016147.2|WP_014160572.1|1704141_1707384_+|carbamoyl-phosphate-synthase-large-subunit
MPRRTDINTILIIGAGPIVIGQACEFDYSGAQACKALREEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKERPDALLPTMGGQTALNCALDLADHGVLDKYNVELIGARREAIMMAEDRELFRVAMGEIGLECPKAAVARSFEQAVEIQATVGYPTIIRPSFTLGGSGGGIAYNREEFEDIIKRGLELSPVHEVLVEESVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDASIAVLRKIGVDTGGSNVQFGINAQTGRVVVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELKNEITGGKTPASFEPSIDYVVTKIPRFAFEKFPQADARLTTQMKSVGEVMAMGRTFSESLQKALRGLETGKVGLDPTGLDLGSEDDMASLRRELKAPGPERLFYVGDAFRAGMSVEEIHALSFIDPWFLDQIEDLIADEARVAAEGLGSLDATRMRELKRAGFSDARLAQLTATDETAVRVLRKALGVRPVYKRVDSSAAEFATDTAYMYSTYEDECEANPTNRDKIMILGGGPNRIGQGIEFDYCCVHAALALRADGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLAIVELEKPKGVIVQYGGQTPLKLARALEANGVPVIGTSPDSIDLAEDRERFQGLVDRLGLKQPPNRIARNDQEALLLAREIGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDNAVEVDVDIIADKDGQVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAQTQAELRRQVVELAKALNVVGLMNTQFAIQAGDDGQDIVYLLEVNPRASRTVPFVSKATGMALAKIAARCMAGKTLAEQGAIKEIVPDYYSVKEAIFPFAKFQGVDPILGPEMRSTGEVMGVGHSFAAAMARAQEAAGIKAPQPGKAFVSVRDPDKQRVLPVARALLERGFSLVATVGTAAWLRKHGIECELVNKVTDGRPHIVDLIKNGEIVYIVNTTEGRRAISDSFSIRREALQQRLTYSTTIAGARALVNSLEFRGTGPVLALQELHKELQA
>NC_016147.2|WP_014160573.1|1707380_1707857_+|transcription-elongation-factor-GreA
MRAPITKQGAQRLREELDYLKSVKRPEVIAAIAEARAHGDLKENAEYHAAREQQGFIEGRINQLEAELSTAEVIDVAALDAGSRVVFGATVVLTDVDTDEEKTYQIVGDLEADIKQSLIAISSPIARALIGKNEGDSVVIVAPAGEHEYEIISVSYGA
>NC_016147.2|WP_014160574.1|1707870_1708788_+|hypothetical-protein
MASATLLLPARAQLAGTLTLEAGRALARADRTVGQPGERAQLRRHFQWTPDHWPVAALTRQLDAGDAADARWLRADPAFLAPDMTGARLLAHGPALGLTEADSAALLPALRPLFGDAGLLLDAPEPSRWYLRLAGDTPLPQFASPDEVLGDDLFGHLPHGDAGRRWRALFTQVQVTLHQHPWNARRLSEGKPAVNALWFWGEGRLPQSVRTRYRQVRSREELVRALSALAGVPDQAQGEVEALVDLRHLRSLALFTDEALAPLLAELRAGELARVVLDFQDGACFVLDAAQRWRFWRRPWTRLDP
>NC_016147.2|WP_014160575.1|1708784_1710605_+|single-stranded-DNA-specific-exonuclease-RecJ
MNGSPRITRRAVPEGGVWPASMPPLLQRVYAARGALDDLQARPRLAQLHPPQLLSGMDAAVALLAEAIANDRHIVVVGDFDCDGATACAVAVRGLVMLGARHVSPAVPNRVTHGYGLSPSLVSELAELKPDLLVTVDHGIACHAGIAQARALGWQVLVTDHHLPGPTLPLAHAIVNPNLPGDDFPSKSLAGVGVMFYVLLALRRHLFGDPAPVKSGAGADRGHQAAAIEGCASRQKRPDLNALLDLVAVGTVADLVPLDANNRALVAAGLRRLRAGQGCAGLRALIEVCGRRAQTLSATDIGFAIAPRLNAAGRLEDMALGIACLLCEQDGPAREMAGILHAINTERRGVQQQMTDEAERALSRVALDGQRPLALCLFDCDWHPGVVGLVASKMKDRVHRPVIAFAPAEPGSSALRGSARSIPGFHIRDALAAIDARHPGLLQKFGGHAMAAGLSLDLANLPAFEAAFAAHAAATLDATLLQAELPSDGELLPHEFDRAHAEALRDGGPWGQGFAEPLFDGVFEVIDWRAVGERHLKLVLRCPQRAAPLNAIHFNGLGAEPPPAQVHLAYRLAPDDYRGGEAIQLIVEHCAPAPLSGCGGRRSAAA
>NC_016147.2|WP_014160577.1|1711382_1712726_-|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MKGIPEWTPETVRALVDQEKGLLDPRIYTDQGLYELELERVFARSWLLLGHESHIPKTGDFMTTYMGEDPVVMVRQPDKSIKVFLNQCRHRGMRICRTDAGNAKAFTCSYHGWAYDVSGKLVNVPFEKEAFGDKHDGDCGFDKAEWGPLQARVATYKGLVFANWDAQAPDLETYLGDARPYMDIMLDRTPAGTVAIGGMQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGILAGMPPEMDLSHAQVPTKGNQFRAGWGGHGSGWFVDEPGMLMAVMGPKVTQYWTEGPAADLAEQRLEHTGMPVRRMFGQHMSVFPTCSFLTAVNTIRTWHPRGPNEIEVWAFTLVDAEAPAEIKEEYRRHNIRTFSAGGVFEQDDGENWVEVQKVMRGHKARSRPLNAQMGLGRSQTGHPEFPGKIGYVYSEEAARGMYHHWSRMMSEPSWATLKP
>NC_016147.2|WP_014160578.1|1713226_1714303_-|class-I-SAM-dependent-methyltransferase
MPASDSPVSEAKEVRESLATRLAESGRLPDALLRMGIRRQCAQRLKDERKGGTEAVFSRQQAWLDGLRQDAIAVETQAANRQHYELPPEFFRLCLGKNLKYSACFWDDSTRDLTQAEEKMLRLYCERAELVNASRILELGCGWGSLTMWMAERYPKAMITAVSNSRSQKDFIEARCRERAIFNVEVITADVNALQLPEEMFDRVISIEMFEHMRNYQALLARVATWLKPGGKLFVHIFCHRELLYLFETEGSGNWMGRHFFTGGLMPSADTLLKFQDRLSIEERWLLPGTHYEKTANAWLENHDASHDQVMGLMRQTYGVADAARWYQRWRMFWMACAELFGYANGNEWMVAHYRFKR

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Crispr_ID: NC_016147_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_8

1917803-1917963

Orphan

Consensus_repeat	Method
CTGCTGCCGACACCGCTGCCAGC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_016147_8

>merge|NC_016147|8|1917803-1917963|CRISPRCasFinder
CTGCTGCCGACACCGCTGCCAGCACCCCGACCGCCGACTCGGCCCAGGCCGCTGCCGACACCGCCGCCACCGCTGCCGACACCGCTGCCAGCGCTGCTGCCGACGCCGGCGCTGCGACCACGGATGACGCTGCCGACACCGCTGCCGAGACCGCCGAAACC

>NC_016147|8|8|1917803-1917963|CRISPRCasFinder
CTGCTGCCGACACCGCTGCCAGC	ACCCCGACCGCCGACTCGGCCCAGG
CCGCTGCCGACACCGCCGCCACC	GCTGCCGACACCGCTGCCAGCG
CTGCTGCCGACGCCGGCGCTGCG	ACCACGGATGACGCTGCCGACA
CCGCTGCCGAGACCGCCGAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_014160764.1\|1912055_1912913_-\|serine-protein-kinase-RIO	unknown	unknown	gnl\|CDD\|270696
NC_016147.2\|WP_014160761.1\|1908280_1908547_-\|DksA/TraR-family-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|182903
NC_016147.2\|WP_014160765.1\|1913148_1914351_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NC_016147.2\|WP_014160774.1\|1920078_1921935_-\|ferrous-iron-transporter-B	unknown	unknown	gnl\|CDD\|223447
NC_016147.2\|WP_014160773.1\|1919818_1920079_-\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014160768.1\|1916365_1917541_+\|thiolase-family-protein	unknown	unknown	gnl\|CDD\|238383
NC_016147.2\|WP_014160777.1\|1922923_1923694_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187629
NC_016147.2\|WP_014160779.1\|1924487_1925876_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NC_016147.2\|WP_014160770.1\|1918256_1918598_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014160772.1\|1919363_1919744_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223848
NC_016147.2\|WP_014160778.1\|1923829_1924396_+\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|179863
NC_016147.2\|WP_014160776.1\|1922319_1922829_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_016147.2\|WP_043290497.1\|1907514_1908084_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NC_016147.2\|WP_014160763.1\|1910669_1912037_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349894
NC_016147.2\|WP_014160762.1\|1908731_1910540_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341066
NC_016147.2\|WP_014160766.1\|1914560_1914791_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014160767.1\|1915041_1916142_+\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NC_016147.2\|WP_043290498.1\|1921931_1922177_-\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NC_016147.2\|WP_014160771.1\|1918845_1919367_+\|polymer-forming-cytoskeletal-protein	unknown	unknown	gnl\|CDD\|377376
NC_016147.2\|WP_014160759.1\|1907084_1907405_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_014160764.1\|1912055_1912913_-\|serine-protein-kinase-RIO	gnl\|CDD\|270696	cd05145, RIO1_like, Catalytic domain of the atypical protein serine kinases, RIO1 and RIO3 kinases and similar proteins. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. Both RIO1 and RIO3 are associated with precursors of 40S ribosomal subunits, just like RIO2. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and chromosome maintenance. Although depletion of either RIO1 and RIO2 results in similar effects, the two kinases are not fully interchangeable. The specific function of RIO3 is unknown. RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K).	5.57492e-72
NC_016147.2\|WP_014160761.1\|1908280_1908547_-\|DksA/TraR-family-C4-type-zinc-finger-protein	gnl\|CDD\|182903	PRK11019, PRK11019, DksA/TraR family C4-type zinc finger protein.	2.65836e-53
NC_016147.2\|WP_014160765.1\|1913148_1914351_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	8.04496e-26
NC_016147.2\|WP_014160777.1\|1922923_1923694_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187629	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs. HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.9481e-111
NC_016147.2\|WP_014160768.1\|1916365_1917541_+\|thiolase-family-protein	gnl\|CDD\|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	0
NC_016147.2\|WP_014160771.1\|1918845_1919367_+\|polymer-forming-cytoskeletal-protein	gnl\|CDD\|377376	pfam04519, Bactofilin, Polymer-forming cytoskeletal. This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.	9.15321e-29
NC_016147.2\|WP_014160778.1\|1923829_1924396_+\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|179863	PRK04542, PRK04542, elongation factor P; Provisional.	5.50148e-110
NC_016147.2\|WP_043290498.1\|1921931_1922177_-\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	8.84313e-15
NC_016147.2\|WP_043290497.1\|1907514_1908084_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	8.04133e-11
NC_016147.2\|WP_014160763.1\|1910669_1912037_+\|M28-family-peptidase	gnl\|CDD\|349894	cd05642, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	1.36582e-144
NC_016147.2\|WP_014160762.1\|1908731_1910540_-\|M1-family-metallopeptidase	gnl\|CDD\|341066	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains mostly bacterial and some archaeal M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	2.48236e-141
NC_016147.2\|WP_014160776.1\|1922319_1922829_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.08151e-10
NC_016147.2\|WP_014160767.1\|1915041_1916142_+\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	6.10188e-88
NC_016147.2\|WP_014160772.1\|1919363_1919744_+\|hypothetical-protein	gnl\|CDD\|223848	COG0777, AccD, Acetyl-CoA carboxylase beta subunit [Lipid metabolism].	0.00706746
NC_016147.2\|WP_014160774.1\|1920078_1921935_-\|ferrous-iron-transporter-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NC_016147.2\|WP_014160779.1\|1924487_1925876_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	4.89117e-121

>NC_016147.2|WP_014160768.1|1916365_1917541_+|thiolase-family-protein
MSDIVIAAAKRTAIGSFLGQFTGVPAPQLGAAAIRAVLAQSGVPAADVSEVLMGCVLPANLGQAPARQAALAAGIPSSTGCTTVNKVCGSGMKTIMLGHDLIKAGSAQIVVAGGMESMTNAPHMIPNSRTGNRFGDFKAIDHMSWDGLVNPYDGQAMGVFGEATAEKYGFSRQDQDAYAIGSVERARAAQASGAFEGEIVPFTVTTRKGEVSVGSDEQPGKADIARIPSLKPAFKQDGTVTAASSSSISDGAAATLLLSADEAARRGITPLARIVAHATFSQDPQWFTTAPVGAIQRVLEKAGWSVEQVDLFEINEAFAVVAMVPIRELGIAREKVNVHGGACALGHPIGASGARLVVTLINALRVQGKRRGIASLCIGGGEATAIALELI
>NC_016147.2|WP_014160767.1|1915041_1916142_+|Glu/Leu/Phe/Val-dehydrogenase
MLFETLDSSGHEQVVFCHNPDAGLKAIIAIHSTVLGPALGGMRMRPYASTDAALHDALRLSRTMTYKNALAGLNVGGGKAVVIGDPSRDKTEALFRMLGRYVDSLGGRYITAEDVGTDVNDMEYVYRETEYVVGVHQVHRGSGDPAPFTAYGALQGLMATLQRRFGNEEIGKYSYAVQGLGHIGMEFVKLLRERGAKLFVTDLNPALVERAVEECGAEAVSPDEIYEVQADVFSPCALEGSINQETLPRLRSKIICGTANNQMSHVVGEEAMRRGILYAPDYAVNAGGVMNVSLEIDGYNRERAMRLMRNIYHNVGRIFDLAEKEKIAPQYAADRIAEARIGAIGKLKLPLGRTAPRYMGHLRGDH
>NC_016147.2|WP_014160766.1|1914560_1914791_+|hypothetical-protein
MKVVITLVIAVVLLAIGIPLSRAIKNGDEHTITRTVDPTRPGTEPHRAAAARRPLADPAPTRDPSLVTQQQAAVNR
>NC_016147.2|WP_014160765.1|1913148_1914351_+|cation:proton-antiporter
MHPVSTMEVFLIAMTIIFCIPFLIWRLGRTDYFAPLVVVQILTGIVLGPGVLGAVLPGYYHFVFSPQVVQILTGLGGWAVMLFVLIAGIELDLSQAWANRRESGITAGLALGVPLVFGALTALGMLRFPGWIGLQGRPWQFVTGVGMACAVTALPILILLMEKLDILRRPIGQRILRYASLDDIAIWGVLALVLVDWERIGRQVGFLVAFAAACLLLRKLMRAIGERDRWYVMLIWLALCAFGADWSGLHFMVGAFLAGVVIDAHWFDQADMDRLRHNVLLVMMPVFFLSTGLRTEWNVGGAAVFLAALALLVAAVAGKLAGVHLAGRLLKWKPGEASLIGWLLQTKALIMIIFANILLDKAIITSATFTALLLMAVMSTMLTTPMATPRLRRLERPLLG
>NC_016147.2|WP_014160764.1|1912055_1912913_-|serine-protein-kinase-RIO
MKTPNGLQALIDDGVIDEVLRPLKSGKEAAVYVVRSGDQVRCAKVYKDMAQRSFQQRVQYQEGRKVRGSREARAMGKATRYGRKQAEVAWKNTEVDALYQLRDAGVRVPEPFGYFHGVLVMELVTDAEGFSAPRLAEVELEPAQAREFHRILVRQVVLMLCSGLIHGDLSPYNVLVNADGPVVIDFPQVVSAAGNNAARTMLLRDVNNLTAYLGRWAPELLETWYGEEMWALFQAGELRPDSELSGHFTVDESSADLDSVREAINEARFEALIRQQGRQAAAEDD
>NC_016147.2|WP_014160763.1|1910669_1912037_+|M28-family-peptidase
MSRRLIAACLLLPLTCLAQAAAPPASDPRLDAIGTAPSAARIQADVRTLVSFGTRHTLSETASETRGIGAARRWVHAQFQQISRDCGGCLEVRYVSDTIAGEKRIPNATEVVNVVAIQRGSSDPNRYVMMSGDIDSRVSDVMNATADAPGANDNASGLAGTLEAARVLSKYKFPASIAYVALSAEEQGLFGGRIVAAQAKKQGWRIEALLNNDMIGNTSGIDGVSDNHTARVFSEGTRATETEAEARARRFTGGELDSPSRNLARYIARMAEHVPNLEVMMVYRLDRFGRGGHHSPFNDAGFPAVRIMETHEHYDRQHQDLRTENGRVYGDTLDGVDFAYAARLTALNAVSLAGLAWAPPPPAQVRIDGAVSADTTLSWTRPPATQAPELAGYRLYWRLTTEPQWTHSRYVGDVTSHTLKNMVIDNHYFGVAAVARDGSESPVVFPGAAGSFGGY
>NC_016147.2|WP_014160762.1|1908731_1910540_-|M1-family-metallopeptidase
MRHARCVLVGVAVGLASLVPAAPAAQPELSATTRQTGLPRTPEQRAVVFEHATLHFKVLPQDRRIQGDATLRFRAGQELATMVLDLDRAYQVSAVQVDGVALARKDWANPEGRMRITLPRAVAAQQGFQVRVVYAGAPHVATRAPWDGGLVWSSAPGGEPWVASAIQGEGCDLLWPCIDHPQGEPLLVDEYITVPAPLVAPGNGVLVDMQEHDGWRTWHWRARSPDTYAVAINVGPYEQLKGEYHSRFGNAIALAYWHLKGQDAKAQDLFDELPRMLDFFERQIGPYPFGDEKVGIVQTPYLGMEHQTINAYGNDYRKDKYGYDWLMQHEFSHEWFGNQLTNADWDDMWLHEGFGSYMQPLYLQYLRGQMEYHAALLDQRAKLSNRVPIVSGKPQTEQSVYDSQHGPGLDIYYKGSLMLHMLRGLVGDQAFFKTIRLAVYGTDDPRPGQFQPRHLSTPDYIAIVNEVTGRDYGWFFQVFLYRAALPELLAERDASGLALRWKTPGEVPFPVPVEVRIGANSGRIVTVPMPGGRGHVDLPPGELYTLDPQSRLLREEPRFAVAVRDAAERKAAADRAAAEKGRAEKGQAERGQTEKAKAAAKP
>NC_016147.2|WP_014160761.1|1908280_1908547_-|DksA/TraR-family-C4-type-zinc-finger-protein
MATGWANDGAVQDQIDATVNDAIQRARRQLPSGPSLLRCEECDAPIPEARRKAVPGVRLCVNCQAAFDETRVAAAGINRRGSKDSQLR
>NC_016147.2|WP_043290497.1|1907514_1908084_+|mechanosensitive-ion-channel-family-protein
MKERLPLWMHQWLGVLVPGAQVLLILLTMRLVQLLARRLIGRVAGRYDLPPDLAMGLRRAINLVVMLAAMLAALNVLGVSAGVLWGAFTGFATVGAVAFFAAWSVLSNIFCTFLIFITRPFRLHEMIELLENGDKPGLKGKVMDINLLYTTLQEPEAFDGAPTTSIQVNNWFFQRSIRRWRGTSPMPPG
>NC_016147.2|WP_014160759.1|1907084_1907405_-|hypothetical-protein
MKGLLPLFFNALALLLFGIGLSGPLVPEAGAPASWPLLAFGAAPIAMLGVCGYTATRWPARLAFVLQAVALLAVLLVILALQAGVLGAGRADAKAAAIHGPAAGLP
>NC_016147.2|WP_014160770.1|1918256_1918598_+|hypothetical-protein
MTNKLNLVLIAAVLALGACSQKTQDAASATASSAADDAAAAADQAAAATDEAANKASAAASEAADAASTAAENTENAAQSATADAAAAVSEGADATADKAAEVSAEADDAAKQ
>NC_016147.2|WP_014160771.1|1918845_1919367_+|polymer-forming-cytoskeletal-protein
MSMWKDQLSGKKDATPPPADPAPLRDGPAPAPFAPEPIAATPVPTPALATARPAAAAIKESLIASDLTIEGKIEGTGHVRIAGKFKGDVNVQGDLTIEQGARLSGGVKADKVIIAGELEGNIEAAKQVELLASGALIGDVKANTLTVASGARLRGQADVGGEGNDRKKDSDAA
>NC_016147.2|WP_014160772.1|1919363_1919744_+|hypothetical-protein
MSNARPGTAGATRACPHCKATILETAAVCPSCRHHLRFDDSAAVNKRQAERLVPLKVEGTVRHPHGADAYEYTAVVVIRDQRGQELDRHVVGVGALRAGEQRTFSLAVEMFPHTGATAPRGKRRLS
>NC_016147.2|WP_014160773.1|1919818_1920079_-|hypothetical-protein
MQLSLLLQYGVIALAALVSAWVVANKQFPTAMRRLRLWLALPLVREGRPAWIRKLGSRIAPAATGGAGACGGCSSCGPSSRVSGKR
>NC_016147.2|WP_014160774.1|1920078_1921935_-|ferrous-iron-transporter-B
MNAIAAAPRLALIGNPNCGKTALFNLLTGSRQKVANYAGVTVERKEGRFNGASGQGYVLLDLPGAYSLNAASLDEAITRDLCRGFLPGEPAPDALVCVVDATNLRLNLRFVLEVLRLGRPVILAINMADAARRRGIGIDLAVLQRELGIPVVETVAVRANGARALLEQIDRVVANPQPPARVLPDDADLHAETRRLLALAVTMPTRTARVDDALDRWLLHPVFGLVALALVMFLIFQAVYAWATPLMDAIDAATGWLGAWVGGVLPEGPLNSLLTDGIIAGLGGVIVFLPQILILFAFILALEESGYLPRAAFLLDRTMAAAGLSGRSFIPLLSSFACAVPGIMSTRSIQDPRDRLATILVAPLMTCSARLPVYALLIGAFIPQQKVWGVFNLQGLVLFALYFAAIISALMVSWVMKRWRRDKGEHALLLELPSYRIPHLRDLGIGLYERAMIFLKRVGGIILALTVLLWVLLSFPGAPADATLPAIDYSFAGRIGHAMTTVFAPLGFNWQICIALIPGLAAREVAVSSLATVYALSGDDDAAAQALLPLIHDGWSLATGLSLLVWYIYAPMCLSTLATIKRETNSWKRMAAAAGYLFALAYIASLVTYQVAVALGAG
>NC_016147.2|WP_043290498.1|1921931_1922177_-|ferrous-iron-transport-protein-A
MMLSELPRRTQAIVDSVQDRGPNDTIARRLRELGFVSGEPVEVVARGPIGADPILVQIGFTRFALRRSEAGRVRLRDGEPA
>NC_016147.2|WP_014160776.1|1922319_1922829_+|GNAT-family-N-acetyltransferase
MSTALQIRPIGPGDDAAMAAIIRTVMPEFGACGAGFAIHDPEVDWLSRAYARPRCAYFVVERKPAPAQAGGVVLGGAGVAPLEGGSQDICELRKMYFLPQARGLGAGTAMIQTCLQAARGLGFAQCYLETLDGMDAAMRLYRKTGFSRLEAPLGATGHGGCDRWYLLTL
>NC_016147.2|WP_014160777.1|1922923_1923694_+|SDR-family-NAD(P)-dependent-oxidoreductase
MHLSDTRAVITGGVSGLGLATAQRIVAGGGQVALLDVNDDRGDAAVAALGSAHARYICTDVTDETVVAAALSAAHEFMGTVNVAVNCAGILGSGRMLGKDGPMPLSAFRNTVLVNLVGSFNVAKAAANLMQHNDPGEDGERGVIINTASVAAFEGQIGQAAYAASKGGVVSMTLPMARELARFGVRVMTIAPGIFWTPMVDGMPGAVQQSLAASIPFPSRLGRPDEYADTVAFILASRYLNGETIRLDGAVRLAPR
>NC_016147.2|WP_014160778.1|1923829_1924396_+|elongation-factor-P-like-protein-YeiP
MKAADIKKGNVVEYNNGIYQIRDIERSSPQGRGGNVRFRFIMYSVPGGTKLDASFDADDNLPEVELLRRQATFSYMDGEAFVFLDDEDYTPYTLDAEVIGDAAGYISQGLAGSYVQVIDEQPVALQLPQHVTLEVVETPPELKGGTATKRPKPARLSTGIEIMVPEYITTGERILINTTTGEFGGRAD
>NC_016147.2|WP_014160779.1|1924487_1925876_-|FAD-binding-oxidoreductase
MSHSLLDSLHAAVPALRLKTDPGDLEHYGRDWTRRWTPNPLAIALPGSVEEVQAVMRWASEQAVKVVPSGGRTGLSGGAVAANGELVLSLERLNKPLSFDRVDRTLTVQAGMPLQAVHEAAREQGLVYPVDFAARGSCSIGGNIATNAGGIHVIRYGNTREWIAGLKVVTASGELLDLNRALVKNSSGYDLRQLMIGSEGTLGIVVEATLRLTDPPPPSNVMLLALPSFEVLMEVFAAFRQRLQLEAFEFFTDIALRHVLAHGAAKPFEEVHPYYVVTEFAIGDEAGEAAVMAAFEDCMAHGWVSDGVISQSDAQARQLWRLREDITEALAPHVPYKNDVSVRISQMPVFLAQTMQLLGEAYPHFEVVWFGHIGDGNLHINVLKPAGMAQADFVRDCEQVTRLLAQVLKRHGGSISAEHGIGLVKKAYLDSTRSPAEIALMRGIRQAMDPAGLLNPGKLFDP

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Crispr_ID: NC_016147_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_9

2279837-2279948

Orphan

Consensus_repeat	Method
GCAAAAAGAAGGCCCGAACCTAGGTGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016147_9

>merge|NC_016147|9|2279837-2279948|CRISPRCasFinder
GCAAAAAGAAGGCCCGAACCTAGGTGCACCTGCCTATGGATCCGCAACATCCGCAACATCCGCAACAACGGCTGCCGTGCAGGCAAAAAGAAGGCCCGAACCTAGGTCACCC

>NC_016147|9|9|2279837-2279948|CRISPRCasFinder
GCAAAAAGAAGGCCCGAACCTAGGTGCACC	TGCCTATGGATCCGCAACATCCGCAACATCCGCAACAACGGCTGCCGTGCAG
GCAAAAAGAAGGCCCGAACCTAGGTCACCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_148268123.1\|2272170_2272767_-\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014161105.1\|2288063_2288276_-\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014161092.1\|2269731_2270424_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|224707
NC_016147.2\|WP_014161104.1\|2287164_2288067_-\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014161100.1\|2282348_2283497_-\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377413
NC_016147.2\|WP_083833540.1\|2285719_2287168_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|316042
NC_016147.2\|WP_148268122.1\|2271169_2271679_-\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014161102.1\|2284004_2285204_-\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|273690
NC_016147.2\|WP_014161090.1\|2267761_2268802_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|234593
NC_016147.2\|WP_158308234.1\|2282110_2282278_-\|HNH-endonuclease	unknown	unknown	unknown
NC_016147.2\|WP_148268126.1\|2288272_2288485_-\|DNA-binding-protein	unknown	unknown	unknown
NC_016147.2\|WP_043290539.1\|2276271_2278446_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|273831
NC_016147.2\|WP_148268125.1\|2283493_2284003_-\|HK97-family-phage-prohead-protease	unknown	unknown	gnl\|CDD\|309640
NC_016147.2\|WP_043291238.1\|2278881_2279574_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|224707
NC_016147.2\|WP_043290538.1\|2268795_2269710_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_016147.2\|WP_014161089.1\|2266709_2267765_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NC_016147.2\|WP_083833538.1\|2273336_2274302_-\|IS1595-family-transposase	unknown	unknown	gnl\|CDD\|372298
NC_016147.2\|WP_014161098.1\|2280090_2281659_-\|terminase-large-subunit	unknown	unknown	gnl\|CDD\|226974
NC_016147.2\|WP_014161095.1\|2274850_2276275_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_016147.2\|WP_148268124.1\|2281630_2282035_-\|P27-family-phage-terminase-small-subunit	unknown	unknown	gnl\|CDD\|377461

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_014161092.1\|2269731_2270424_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	1.68279e-115
NC_016147.2\|WP_014161100.1\|2282348_2283497_-\|phage-portal-protein	gnl\|CDD\|377413	pfam04860, Phage_portal, Phage portal protein. Bacteriophage portal proteins form a dodecamer and is located at a five-fold vertex of the viral capsid. The portal complex forms a channel through which the viral DNA is packaged into the capsid, and exits during infection. The portal protein is though to rotate during DNA packaging. Portal proteins from different phage show little sequence homology, so this family does not represent all portal proteins.	1.64925e-114
NC_016147.2\|WP_083833540.1\|2285719_2287168_-\|AAA-family-ATPase	gnl\|CDD\|316042	pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide variety of presumed DNA repair proteins.	3.95544e-17
NC_016147.2\|WP_014161102.1\|2284004_2285204_-\|phage-major-capsid-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	9.12775e-37
NC_016147.2\|WP_014161090.1\|2267761_2268802_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|234593	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase.	1.55799e-170
NC_016147.2\|WP_043290539.1\|2276271_2278446_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|273831	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking].	0
NC_016147.2\|WP_148268125.1\|2283493_2284003_-\|HK97-family-phage-prohead-protease	gnl\|CDD\|309640	pfam04586, Peptidase_S78, Caudovirus prohead serine protease. Family of Caudovirus prohead serine proteases also found in a number of bacteria possibly as the result of horizontal transfer.	1.45813e-44
NC_016147.2\|WP_043291238.1\|2278881_2279574_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	2.25885e-115
NC_016147.2\|WP_043290538.1\|2268795_2269710_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.45188e-15
NC_016147.2\|WP_014161089.1\|2266709_2267765_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NC_016147.2\|WP_083833538.1\|2273336_2274302_-\|IS1595-family-transposase	gnl\|CDD\|372298	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain. This domain probably functions as an integrase that is found in a wide variety of transposases, including ISXO2.	5.79531e-34
NC_016147.2\|WP_014161098.1\|2280090_2281659_-\|terminase-large-subunit	gnl\|CDD\|226974	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only].	3.13752e-115
NC_016147.2\|WP_014161095.1\|2274850_2276275_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.76922e-105
NC_016147.2\|WP_148268124.1\|2281630_2282035_-\|P27-family-phage-terminase-small-subunit	gnl\|CDD\|377461	pfam05119, Terminase_4, Phage terminase, small subunit.	6.02704e-12

>NC_016147.2|WP_043291238.1|2278881_2279574_+|aspartate/glutamate-racemase-family-protein
MQTIGLIGGMSWESTLLYYRIINQTVRDTLGGLHSARLLLHSVDFHEIETLQHAGHWDAAGEAMAAAARSLQAGGADFIVLCTNTMHKVADAITEATPLPLLHIADGTADALAAAGITRVGLLGTRFTMEQDFYRQRLEARGFEVITPNADERGQVHRIIYDELCKGVIGEDSRTTYRQIMAALAEAGAEGIILGCTEISLLVDHRDATVPLLDTTALHARAAALRALGG
>NC_016147.2|WP_043290539.1|2276271_2278446_-|type-I-secretion-system-permease/ATPase
MAEGRPSLAVVEPLPDRATAALPEDLGLAGLVLLAQFHGIAADAGQLAHQHGRAGEPFDESVLLLAARQLGLKAGFLAIAADRLDKVALPALAWRRDGEHFIVAKLGEQKVLIQDLRLRRPKVLSRAEFEERYEGRLLLAASRASVLGELARFDFRWFVPAVVKYRRILLEVFVVSLFIQLFALVTPLFFQVVMDKVLVHHGMTTLEVIAVGLVAIALFDVALNGLRTYVFAHTTSKIDVELGARLFRHILNLPLAYFESRRVGETIARVRELENIRTFLTGQALTSVLDLLFTGVFLAVMFYYSGWLTLIVVLSLPVYALISAGIIPILRKRLDEKFARGAENQSFLVETVSGIGTVKATAVDPRMARTWDNQLAGYVGASFRVTRLANIGQQSVQLVQKLVGVGILFFGARLVIDGKLSVGQLIAFNMLSGQVAAPIVRLAQVWQDFQQVGISVERLGDILNTRTEVPGSRMALPPIQGRVTFDQLTFRYRPDTADVLSGIDLDIAPGEVIGIVGRSGSGKSTLTKLVQRLYVPQGGRVLVDGHDLALADPAWLRRQLGVVLQENFLFNRSIRENIALGDPGMPLERVIQAAQLAGAHEFILQLPEGYDTKVGDNGAGLSGGQRQRIAIARALVTNPRILIFDEATSALDYESEHAVMQNMRAICQGRTVLIIAHRLSTVRMANRIVVVDKGRIVETGKHEELVDRPGGQYAHLYKLQQGIA
>NC_016147.2|WP_014161095.1|2274850_2276275_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MKHVWEGAKEFLGRYRQAFGAAWKIRDLLDPPKRTEDELAFLPAQLELVESPTSPAARWTARIIMALFCVALLWAIVGKLDIVAVAPGKTVVGSRTKVIQTAETAVVRSIRVKDGQTVRRGDLLIELDATATGADYRQADDALDSARLAELRHAAMTQALGTDRLPAPPLPIPGIAEDRLQSAWQLTGSEFASFQAQQQRLKATIEQQQAQAQTVRSQIDPLQRSLSIARERVADMERLLGSQYVSKHEYLARKQEMVEMERLLAAQQATLVESQSAIAGAREELRVLIADTRQKTYDGLRQAREQIGQYAPQVAKTEQRDKLMQLRAPVEGTVQQLAIHTVGGVVTPAQALMAIVPSEELLEVEATVLNKDIGFVRPGQRATVKVESFPYTRYGYLEGIVETVSHDAAQDENLGLIFPARVKLQNASLVIDGVKVMLTPGMSLSVEIKTGKRRVIDYLLSPLQEHTTEAFKER
>NC_016147.2|WP_083833538.1|2273336_2274302_-|IS1595-family-transposase
MAMNRVQFQPGLSLPAFLAQYGSEGQCERALEAARWPDGFVCPRCADKGCSKFYRHRQAYWQCSQCRHQSSLRSGTVFEHSRLPLRTWLLAMYLLGQSKTNLSALELMRHLEVSYPAAWRMKHKLMQAMDEREAGRKLGGVVQLDDAYLGGERNGGKAGRGSENKRPFVIAVETTQDGRPRHVVIDPVPGFTKTALSDWIARRLHPRSDVYSDGLGAFRALEAEHAHTVIEGGGRAGCEQDNARWVNVVLSNLKRSLDGAYHAFKFTKYAHRYLAETQWRFNRRFDLVALVPRLLVAAARIKPWPERRLRDVPVFSAEIAC
>NC_016147.2|WP_148268123.1|2272170_2272767_-|hypothetical-protein
MKINYLRDFFTNLFVVSLVGCGLSDMGSHAGDMRLAWSEQVRLPGGEQAVTNSVVMGRTGGAWGGPVEWLSSETTLRIPAVMPGRRAPPPWHGTYIPVLLDYDAQQDRWTLLATVLTCPQWYALGRPSAPYLQYVTQDGAPWALVPLDVGYFGQKSNLLTGPRQTDEDRLVTLQEKSERKRRSSERFVKIMPFVKTNC
>NC_016147.2|WP_148268122.1|2271169_2271679_-|hypothetical-protein
MNELKEHRSIIIFIFFVVPLVGSKAAAIFGIHDIGIIYGWKKFYSAALGRSNEYALAATLYLLMAPLAVIWINSMASFQGISRIKASILSVGCAAVSFVLLCIIILGPPISSIETPTQGMRFVISVGRSHAAFCAMYGAFVISFIATAYASILIFFYLIKDIYKGMRDE
>NC_016147.2|WP_014161092.1|2269731_2270424_+|aspartate/glutamate-racemase-family-protein
MQTIGLIGGMSWESTLLYYQIINQTVRDTLGGLHSARLLLHSVDFHEIETLQHAGHWDAAGEAMAAAARSLQEGGADFIVLCTNTMHKVADAITGATPLPLLHIADGTADALAAAGITRVGLLGTRFTMEQDFYRQRLEARGFEVITPNADDRDDVHRIIYDELCQGAIRDDSRNTYRRIMAALAEAGAEGIILGCTEISLLVDHRDATVPLLDTTALHARAAALRALGG
>NC_016147.2|WP_043290538.1|2268795_2269710_+|DMT-family-transporter
MVSAAPVAPLRAALLMLASTLSFGLMAIAIRLASQSLQTTEVAFFRNAFGLLALLPVILRPGRPLPRTRHLPRYLVRTVIGLASMLCGFWAIGHLPLSQAISLSYSTPLFVTIAAVFWLGEKVHMRRWLAVAAGFLGVLVILRPGSSQFSPGLLVAVAAALISALVAIQIKQLSRLDPPDTVVFYTYLFWVPMSLLPALFQWQWPQGIAWLWLVCTGVSGTAGQLLWTRALRLGEVSALQPISFMQLPVVIVLGWWLFDERLDAWTALGAGIILASTAYIAHREAMLARRAATTAPVEGAKPGE
>NC_016147.2|WP_014161090.1|2267761_2268802_+|UDP-N-acetylmuramate-dehydrogenase
MRAGWRLTEHAPLRSRNTLGVDAQARFLLELQDLAALPAALALEPLRHRHWLPIGAGSNLLLAGDVDAVALSFDARAITVVGADADAVLVRAEAGVAWHALVLWTLDHGLCGLENLALIPGTAGACPIQNIGAYGVEAGEHIVGVEAWDTRAGDWCRLSRAQCAFGYRDSVFKRQPGRWLITAVTFALSRTPALRIEYAGLRHELEDMGIEHPGPREVAAAVIRVRRRKLPDPAVLGNAGSFFKNPIVPAEVADRLQSRLPGLPVFSGDAADTRKLSAAWLIEQAGWKGHRAGDAGVSPDHALVLVNYGQASGAQLLALARQIAASVQQRFGVAIEPEPRIVGASW
>NC_016147.2|WP_014161089.1|2266709_2267765_+|quinone-dependent-dihydroorotate-dehydrogenase
MYGLARPFLFALDAERAHGVGLRALEAAYRSGTLRLLAPRPRPLPTRAFGLEFPNPVGLAAGLDKNGAHIDALLALGFGFVEIGTVTPRPQPGNPPPRMFRLPQHKAVINRLGFNNQGVDALVRNVQRARRKGGLLGINIGKNKGTPNASAAEDYLFCLERVYPLADYITVNISSPNTAGLRELQEEQALRQLVGTLRQAQEKLGAQHGKRVPMLVKVAPDLSDEDIDAVCRVLGDLSVDGVIATNTTVDRSVVHAHRHAGQAGGLSGAPLMAQSTLVLRRMRARLPDSIPLIGVGGITCGADAVAKVSAGATLIQLYTGLIYQGPSLVYDCVEAIRRRREQPSRGAVAPV
>NC_016147.2|WP_014161098.1|2280090_2281659_-|terminase-large-subunit
MAKRDSSVREPEFWYDAEAAERAVSFFAECIRHTTGEWRGLPFVLSDWQADRIVRPLFGWKRADGTRRYRTCFVFIPRKAGKTTLAAGLALYALYCDDEPGAQVINAAADRDQARLCFDAAKQMVEMETELSCRSEVYKNSMVIPATGSSYRVLSSDAYTKHGLNCHFIGADELHCWPGRDLWDTLTTSTGARRQPLTVVTTTAGFDKHSLCFELYDYAKKVEAGIIEDASFLPVLFEAGEDDDWKDPTTWRKAHPGLGVSVKLDYFEAECAKAQATPAYENTFRRLLLNQWTEQDARWLGMKDWDSCKGELPDLTHADCYGGLDLASTIDVTALVLVFGVGDKLVLVPHFWIPSERIHERVRRDRVPFDIWVAKGLVTATDGAVTDYDRIRADIHALADRYRIREIAYDRWNATQLATQLQGDGLAMVGFGQGFASMAAPTKELERRIIGRELLHDGHPVLRWMVSNVTVEMDAAGNLKPSKAKSNERIDGVVAAVMGIGRYMVAEAPAVDPYAERGLIFI
>NC_016147.2|WP_148268124.1|2281630_2282035_-|P27-family-phage-terminase-small-subunit
MATRGQRPKPVALRLLNGNAGKRPINPAEPDTGPADTRVPDCLSEGAVSHWVRLAPMLARAGVLKASDHDLLVTYCETFAAYLDAVRSGGAPMSMVGQLRQLMGELGMTPAARARITADKAPEADNGKARFFGS
>NC_016147.2|WP_158308234.1|2282110_2282278_-|HNH-endonuclease
MATEVHHLDGNRRNNLPGNLLGLCEACHALEMWLEHDADGNPTDPTHAWNRENRW
>NC_016147.2|WP_014161100.1|2282348_2283497_-|phage-portal-protein
MKWPWAKTEKRDADPSWAALVNHGAVSASGQFVDARSVESVSTAFSAVNLIAGTVASLPLHVYRRLDNGDRERASEHPLASILGARPNSVQTAFELREMMTAQCLLHGNAFAEIRTDAAGTVAELRPIHPRDVTVVRLANGRHRYDVSTDGRVRSLLAEEVLHLRDRSDDGLVGRSRVQASRETLGGALALQAHGNRSFANSARLSGVLQTSGILTAEQVKRLGESWRAQYAGADNVGKTAILEGGLSFSPLSMSNEDAQWLQAQQFSVEEVARLFNVPPVLLGDLRHANFSNSVEMMRHFVTVTLRPWLTRWEQALERSLLGPIARGRYYVEHSAEGLLRGDAVNRADFYAKGISAGWLLPSEARRLENLPTIEGLDNAAD
>NC_016147.2|WP_148268125.1|2283493_2284003_-|HK97-family-phage-prohead-protease
MIEQRFAHEVRASGRTLSGYVARFGTEARIGSFVEVIKPGAFRASLDSGADVLALADHDPSRVLGRTRSGTLHLAEDGEGLAFSLQLPDTQAGRDLVALAERGDLGGCSFGFTVGADGERWTGNKRELRAVTLHEVSIVQSWPAYDGTSANLRHRMPHADHRRLWLETV
>NC_016147.2|WP_014161102.1|2284004_2285204_-|phage-major-capsid-protein
MSVQAIRELRSAKVAEARAIISAAGDRALTADETAKFDSLKAEIQSLEAAEARAQFMAEAERRAPGTPVSGEHGSALESRVSVLSVIRSMVEGRALSGAEAEMHAELERRHGAAKHGGVLVPMSAFERRATTTATAPELVGTAHMADQFIGPLRNSLLVRTLGVRTLSGLTGNVSIPKAGTGLSVGWVAEGAALPESDMTFDAITLSPKTVGGITEMSRQLILQSAPDIEALVRDDLSFAIAAAVDTAIISGTGLAGQPQGIIGRAGVQTAAMPADWDDILAIEQQLAGVNVVPSGWFTSPAALSALRGTLKAATSGSDYLATSSAIGELPVASSNAAPAGVAILGDWSQVLLGQWGAVELLVNPFAETPYRRGGVLVRAMASVDVGVRHEQAFVVAGP
>NC_016147.2|WP_083833540.1|2285719_2287168_-|AAA-family-ATPase
MSMHEKRNPGWRAGASGRDAGVDRLHSHSTATISEIQGRIDDDELARLEQLAGDYCAADVEPDRPPSLSDTISGLLRPMTDAELEASRAPHPHVFQAGERGLFPLGEVSVIGARGREGKTTVIVGLAVAVAIQHDVGRLNPPVGRSVVIFSAEDDRRQYARKVAAQCSQLGPQQAAQVKRRILVPDLDSQEMAAFRTLVTVADRSPVPTGTDAALVEAMRPLMDRPDAPVLVVFETASTLSDAEEDTRGHKMLIACLKRVARELNVACILVHHTSQAADNNLADLNISTADIRGGTALVYNSRQNAMLVNLGSDADPFDATDARTVLRKMAGSHDGRVTALVTLDSSKGMDPPPLFFAWRQTDFGPAAIEHEPLPTLQGKPWRKVREMVMAERGNVRAEARSNAQGASVTHVVALAEKLHKAGKQPTARAVSVAAGKSSTWAKPYLEAAVDEGLLTCTKEPIPRMKDGGAVYRPADSTVVVS
>NC_016147.2|WP_014161104.1|2287164_2288067_-|hypothetical-protein
MSVAPADFYHARAIKRFRRTSAQVEQLDLQIIAALKADHPQSVRHVFYLMTNPRLPEPVEKSDRGYRHVQHRLVELRASGRVPYGWVVDATRNGFFVNTFSGAADFVERMTHLYRADPWRDAEYRCEVWVESRSLASVLLETCQELAVTLYPSGGFASLSFTHDAAVQINEDDDGRPLHIFYAGDYDPAGVLIDRKIEEALRQHLDPAVKMTFERIGITQEQIEHYDLPTKPRKEGDRRALHIKETVEAEAMPAHIMRGLLRKRIEALLPENALHVAAAAQASERGYLKEMAQTMGRDRA
>NC_016147.2|WP_014161105.1|2288063_2288276_-|hypothetical-protein
MNAAYDATYSRTPEGRASELIWAADRLVAELQRLRLDPSVKRAEAVTRHLHGMARTASLLTVALSQEVCA
>NC_016147.2|WP_148268126.1|2288272_2288485_-|DNA-binding-protein
MARALKTVSAFADGSPFSEAQVRWWIFNEKTNGMSDNGVIVRIGKRVYIDTDAFDRWVDSQQQTRREVAV

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Crispr_ID: NC_016147_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_10

2496414-2496515

Orphan

Consensus_repeat	Method
GCTCCTTCTCCCCCGCTTGCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016147_10

>merge|NC_016147|10|2496414-2496515|CRISPRCasFinder
GCTCCTTCTCCCCCGCTTGCGGGGGAGAAGGGGACACAGCTGCGCGTCTTGTCGCAGCAAGACTGCCGGGCGCTGGGCTGCTCCTTCTCCCCCGCTTGCGGG

>NC_016147|10|10|2496414-2496515|CRISPRCasFinder
GCTCCTTCTCCCCCGCTTGCGGG	GGAGAAGGGGACACAGCTGCGCGTCTTGTCGCAGCAAGACTGCCGGGCGCTGGGCT
GCTCCTTCTCCCCCGCTTGCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_014161292.1\|2496026_2496350_+\|DUF3301-domain-containing-protein	unknown	unknown	gnl\|CDD\|378706
NC_016147.2\|WP_043290580.1\|2496604_2497054_-\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|236987
NC_016147.2\|WP_043290581.1\|2497935_2498700_-\|cytochrome-c1	unknown	unknown	gnl\|CDD\|225413
NC_016147.2\|WP_014161289.1\|2493667_2493934_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225391
NC_016147.2\|WP_014161298.1\|2500766_2501669_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NC_016147.2\|WP_014161291.1\|2494855_2495971_+\|DUF2272-domain-containing-protein	unknown	unknown	gnl\|CDD\|226772
NC_016147.2\|WP_043290583.1\|2499957_2500578_-\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|273610
NC_016147.2\|WP_014161290.1\|2493930_2494785_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|238806
NC_016147.2\|WP_014161287.1\|2491730_2492891_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NC_016147.2\|WP_043290585.1\|2501810_2503310_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NC_016147.2\|WP_014161301.1\|2503555_2504539_+\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NC_016147.2\|WP_014161284.1\|2489885_2490206_-\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|188046
NC_016147.2\|WP_014161296.1\|2498692_2499958_-\|cytochrome-bc-complex-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|224209
NC_016147.2\|WP_043291292.1\|2505093_2505663_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_162470511.1\|2489142_2489883_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236357
NC_016147.2\|WP_014161294.1\|2497148_2497766_-\|glutathione-S-transferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236537
NC_016147.2\|WP_014161302.1\|2504551_2505049_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NC_016147.2\|WP_014161286.1\|2491113_2491539_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014161288.1\|2493105_2493609_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NC_016147.2\|WP_014161285.1\|2490347_2490926_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_014161292.1\|2496026_2496350_+\|DUF3301-domain-containing-protein	gnl\|CDD\|378706	pfam11743, DUF3301, Protein of unknown function (DUF3301). This family is conserved in Proteobacteria, but the function is not known.	8.21821e-31
NC_016147.2\|WP_043290580.1\|2496604_2497054_-\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|236987	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional.	1.30042e-70
NC_016147.2\|WP_043290581.1\|2497935_2498700_-\|cytochrome-c1	gnl\|CDD\|225413	COG2857, CYT1, Cytochrome c1 [Energy production and conversion].	3.35378e-70
NC_016147.2\|WP_014161289.1\|2493667_2493934_+\|hypothetical-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	1.15016e-11
NC_016147.2\|WP_014161298.1\|2500766_2501669_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	8.7548e-44
NC_016147.2\|WP_014161291.1\|2494855_2495971_+\|DUF2272-domain-containing-protein	gnl\|CDD\|226772	COG4322, COG4322, Uncharacterized protein conserved in bacteria [Function unknown].	3.24669e-58
NC_016147.2\|WP_043290583.1\|2499957_2500578_-\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	gnl\|CDD\|273610	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit. This model represents the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulfur as found in ubiquinol-cytochrome c reductase. The model excludes the Rieske iron-sulfur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. [Energy metabolism, Electron transport].	8.67302e-83
NC_016147.2\|WP_014161290.1\|2493930_2494785_+\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|238806	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.	3.65644e-125
NC_016147.2\|WP_014161287.1\|2491730_2492891_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0
NC_016147.2\|WP_043290585.1\|2501810_2503310_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NC_016147.2\|WP_014161301.1\|2503555_2504539_+\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	4.45661e-147
NC_016147.2\|WP_014161284.1\|2489885_2490206_-\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|188046	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. [Energy metabolism, Electron transport].	1.47974e-56
NC_016147.2\|WP_014161296.1\|2498692_2499958_-\|cytochrome-bc-complex-cytochrome-b-subunit	gnl\|CDD\|224209	COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy production and conversion].	2.23443e-129
NC_016147.2\|WP_162470511.1\|2489142_2489883_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|236357	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional.	4.92176e-59
NC_016147.2\|WP_014161294.1\|2497148_2497766_-\|glutathione-S-transferase-N-terminal-domain-containing-protein	gnl\|CDD\|236537	PRK09481, sspA, stringent starvation protein A; Provisional.	5.14608e-79
NC_016147.2\|WP_014161302.1\|2504551_2505049_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	5.75244e-58
NC_016147.2\|WP_014161288.1\|2493105_2493609_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	6.91646e-87
NC_016147.2\|WP_014161285.1\|2490347_2490926_+\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	4.23219e-113

>NC_016147.2|WP_014161292.1|2496026_2496350_+|DUF3301-domain-containing-protein
MTPILLLIAGAAVFFWWNAARAAAERATQLGRNACEAAGVIWLDQSVQATGLRLRRDGQGRLGFERSFRFDYSYDGVQRHTGKLVLHGARLVSLAGPTRPDPIVSLH
>NC_016147.2|WP_014161291.1|2494855_2495971_+|DUF2272-domain-containing-protein
MPIRWLFALGVALSSLAFKAHAIEVCDAPPRFGLSPAAIAIVRTACEEHRQWMRPFIDRRGRLASLRVTEAESGNLADHGLVPWQRVAMYWRDSGTLVMVGDEPGASSCLVPPGNRYTDSDCRAFIIDTPWSAAFVSWVMARAGIVGFQRSPRHIDYIRAAWKDGGNGGPYRYADPAVEKPAPGDLLCYIRNRDQVLGHAGLTSSLTGSGRIPKESHCDIVVAANVGGDRTLHLIGGNVLNAVTMRQLDLDRSGHVLLPVPSALAEEGQDGNDPGRECTPAQQDLCDFNRQDWAVLLKLQATGPLPALPAAPAPPIGVPAPGLPPMPAALTPTPSGTGLQPPAPTQVPVPLPAAEAAVPAESGAAPLRPGP
>NC_016147.2|WP_014161290.1|2493930_2494785_+|carboxylating-nicotinate-nucleotide-diphosphorylase
MNTALLLPESAVREDVHRALAEDIGSGDVSAALLPDVADTAYLLCKQDQVVVCGRPWFDACHRALDPEVAIDWRVSEGQRVDAGTVLATLSGRARSLVSAERTSLNFLQTLSGTATITAAYVQAVRGTGARILDTRKTLPGLRLAQKYAVRCGGGENHRIGLFDMVLLKENHIRAAGGIAAAVAAARALHPELPLVVEVETLDELRQALALDCTRIMLDDFDPVMRREAARIAAGRVPLEVSGMVDLSSVRAVAEDGVACISIGALTKHVHAVDVSLKLGAPPG
>NC_016147.2|WP_014161289.1|2493667_2493934_+|hypothetical-protein
MDRKLLDILCCPVSRQPLGPLEARGLEALNRAIAAGTLKRVDDTVQVEPLKEALVTRDRKIVYRIDDGIPVLLAEEGIATVQVADFPA
>NC_016147.2|WP_014161288.1|2493105_2493609_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MTANLQSPCVGIVMGSRSDWETMQHAAQKLDALGVAYEVKVVSAHRTPDVLFAYAEQAQGRGLRAIIAGAGGAAHLPGMIAAKTPVPVLGVPVQSKALNGMDSLLSIVQMPAGIPVATFAIGNAGAANAALFAAAMLALDDPAIAAALDEFRARQTREVMDRDDPRQ
>NC_016147.2|WP_014161287.1|2491730_2492891_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MTTVGILGGGQLARMLALAGVPLGLRFLVLDPSADACAGQCAPLQVGAFDDQAALARFADQVDVVTFDFENVPAASAQWLAQRVPVFPGPRALAIAQDRLSEKSLFGELGIPVPAFQAVSTRAQLDAALARIGVPCIMKTRRFGYDGKGQFRIRSLADAEAAWDALGAQAGSVGLIVEGFVAFDRELSVVAARSRDGQFKAFPLTENWHVDGVLSASLAPARASQALRAQAIDYARRVAEATDYVGVFALELFCQGQTLLANEMAPRVHNSGHWTIEGAEISQFENHLRAVLGLPLGEPAMRGMACMLNWLGQMPDATAVLSQAGGHWHDYGKSARAGRKVGHATLRAEEATALSCALADVGAALSRPDQVQPVIARLNENGVGGD
>NC_016147.2|WP_014161286.1|2491113_2491539_+|hypothetical-protein
MHKAARWIVPMLLPALVVTGNVAAQHRDRDHNRPGPAGGPGTNWENPPGWRGGPGASPDRRYYRHDGVRYEFKIVDGGYYYSPRYGYWHPRYGLWNQARRCWMDIDDNPPGPAGSRGTNWENPPGWRGGPGASPDRFGRCP
>NC_016147.2|WP_014161285.1|2490347_2490926_+|superoxide-dismutase
MAIELPALPYDRTALEPHISGETIDYHYGKHHKTYVDNLNKLIEGTEFAALSLEEIIRKSQGGMFNNAAQVWNHTFYWNGLSPKGGGAPTGKLAELINAAFGDFDKFKEEFTKTAVGTFGSGWGWLVQKKDGSLGLVSTSNAATPLTGEDTPLLTIDVWEHAYYIDYRNARPKYVESFWSLVNWDFVAKNLA
>NC_016147.2|WP_014161284.1|2489885_2490206_-|Grx4-family-monothiol-glutaredoxin
MLVLERIQAELDAHPMVLFMKGTPEYPMCGYSSQAVHALLAAGADGLRAINVLEEPEIRANLPRFSNWPTFPQLFIHGELIGGCDITLELHESGELARIVAEALPK
>NC_016147.2|WP_162470511.1|2489142_2489883_-|SDR-family-NAD(P)-dependent-oxidoreductase
MLQVPARAPQSLAARVVLVSGAHGGLGQASARACAQAGATVVLLGRRPARLNRVYDACARLGPEPLLYPLDLEGAAPDDYAELARRIGTEVGRLDGLLHCAADFRGLTPLEHTDPAAFARALHVNLTAAWWLSQACLPLLKAATDGALVFTLDDPQRVGQPYWGGYGVAQHGLRALVHMLHAELASTSVRVSALQPGPMRTTLRARAYAEDPDPSLADASEYARHCVSLLSPAGADRRGQVWNPGP
>NC_016147.2|WP_043290580.1|2496604_2497054_-|ClpXP-protease-specificity-enhancing-factor
MTDDVPPMTSHRPYLLRALAEWIADNDMTPHLLVDATQAGVQVPASAVKEGRVVLNIATRAVAHLVIDNLTVSFSARFGGVSYPVNVPISAVLAIYARETGQGMALPEDIGTGTGPGPHDDNEPPSPDAPTPHEPAPPPSRRPHLRVVK
>NC_016147.2|WP_014161294.1|2497148_2497766_-|glutathione-S-transferase-N-terminal-domain-containing-protein
MRNTLTLFSSVDDVLCHRVRLVLAAKGVSYDLVPVDPQNPPEDLIDLNPYHSVPTLVERDLTLYAASVVSEYLDERYPHPPLMPVDPLSRARLRLAMLRIEVDWVPQVQAIQLGNKAQADAGRKRLKELLTASVPLFKASKFFLNPEMSLADCAMAPIIWRLQSLDVGLPKDGKSIEDYGNRIFRNPGFVRSLTEQEKKLRELPA
>NC_016147.2|WP_043290581.1|2497935_2498700_-|cytochrome-c1
MTKRLSSIRRVLPRLAVFAAGLILSGSLQAAEGGAILQAGNDLSDKASLQRGAKLFMGYCSGCHSLKYLRYSRMAEDLGLSEEDVMANLNFTGAAVGEQIQVAMPDEAATKWFGKAPPDLSLIARVRGPDWIYTYLKSFYLDETRPVGWNNTLFPNASMPNPLWELQGLQHAEYGPPDPATKDKTVAALKLATPGAESPVEFDRSVRDITNFLEYASEPAALKRQSMGVWVLLFLAFFTFLAFLLKKEFWKDVH
>NC_016147.2|WP_014161296.1|2498692_2499958_-|cytochrome-bc-complex-cytochrome-b-subunit
MSNVITRAATGAFDWLNARAPGLMPMYRKHMSEYYAPKNFNFWYYMGSLALLVLVNQIVTGIFLTMNYKTSAAEAFASVEYIMRDVEWGWLIRYMHSTGASLFFIVVYLHMFRGLMYGSYQKPRELVWILGMLIYLVLMAEAFMGYVLPWGQMSFWGAKVIISLFGAIPVIGQGLTEWIMGDYLPSDATLNRFFALHVIALPLVLLLLVVLHLGALHEVGSNNPEGVDTKHGPKGNRWSKTAPTDTIPFHPYYTVKDLVGVGFLLIIGAFVIFFAPAFGGLFLEHDNFTEANRLVTPAHIKPVWYYTPYYAMLRVVPDKLGGVLVMFSAIAVLFTVPWLDRGKVRSIKYRGLSYKIALGIFAFSFIYLGKIGSGPGTDQTETYIGRVLTVCYFGFFVFLWVYTFFGLERTKPVPERVSTHD
>NC_016147.2|WP_043290583.1|2499957_2500578_-|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit
MANDEVTMPVDAGRRRFLTATTAVVGAVGAGFLAVPFIKSWNPSTRAKLAGAPVTADITGLQEGQRLVLEWRGQPIWVVKRSKAILDALPSLDGRLRDPNSENEDQQPAYVLKGNPELRSIKPEISVLVGLCTHLGCSPEIVAEIRPEPFDPEWKGGYFCPCHKSRFDMSGRVFQGVPAPTNLLVPPHHYQDDNTIIIGVDPEGAA
>NC_016147.2|WP_014161298.1|2500766_2501669_-|lytic-transglycosylase-domain-containing-protein
MKGLLRLGMFAATLVALPASAGTLYKCVGADAVTAYVSKRLPGASCSVVSRYRPAPSRRPAHPPLAPAAAAPPQTVAVAEKRPTSVVSPAAAVALPTPGPVASPPRRVVSGQVYSFIKDGVRNYTSVRPRGMDVASVRTIKYSYLQTCFACGNPKLNFGAVRLNTLAYGSEIAAAAREFGVEEAIVRAIIHAESSYNPVALSRAGAMGLMQLMPATARRFGVADAYDAAQNIRGGVQYLAFLLKRYQGDLTLAAAGYNAGEGAVDRNGGVPPYAETQRYVQRVGVLAERYRASVGAIGAR
>NC_016147.2|WP_043290585.1|2501810_2503310_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MTGTPDTITPAPGELPVVPLPVAGQAPGQARGKPGAGLPARGKLYIKTHGCQMNEYDSAKMADVLAASDGLELTDNPEEADVVLVNTCSIREKAQEKVFSQLGRWRVLKESRLKGQGREVIIGVGGCVASQEGEAIIKRAPYVDLVFGPQTLHRLPELIRARREQNRPQVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGTEVSRPFEDVLVEVAQLAAQGVREINLLGQNVNAYRGPIAPAEAADAEGEFADLGMLIRTIAQIQGVGRIRFTTSHPLEFSDSLIDAYRDVPQLAHYLHLPVQSGSDRILSAMKRGYTALEFKSRIRKLRSVRPDISISSDFIVGFPGETDADFDKTMKLIQDVGFDQSFSFIYSRRPGTPAADLPDHTPAAVKHARLERLQAHINAHAAGISQRMVGSVQTVLVEGPSRKNPDELTGKTENMRSVNFPGSKRMIGQFVDVLITQALTNSLRGRLAVAGDAPAA
>NC_016147.2|WP_014161301.1|2503555_2504539_+|PhoH-family-protein
MTTSPHHDFTLDPYDTEQLANLAGPFDAHLRQIELKLGVEISNRGNIFRVQGPARAVAATEQLLRALYEEAASEVFDADAIHLRLNEANIEHLAGDGYAPQEVAIKVKRGTVRGRGPNQSAYLHAIATHDINFGIGPAGTGKTFLAVAMAVEALNEARVQRLILVRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALYEMLGVEKVAKLLEKNVIEIAPLAYMRGRTLNDAFVILDEAQNTTVEQMKMFLTRIGFGSTAVVTGDMSQTDLPKHIRSGLTDALEVLRGVDGISFSFFGARDVVRHPLVARIVRAYDARDDQAADAKPA
>NC_016147.2|WP_014161302.1|2504551_2505049_+|rRNA-maturation-RNase-YbeY
MTQGPIHLQVAVSYALPRVGLPAAVSFRKWVAAALKGRIREADLAIRLVDAKEGRALNRHYRGKDDATNVLSFPGQLDQTIKLPRGVTMPLLGDLVICAPVVAREARDQDKALAAHYAHLTVHGTLHLLGWDHADDKEAEAMEQLERQILSELGIDDPYAAERPA
>NC_016147.2|WP_043291292.1|2505093_2505663_+|hypothetical-protein
MATAAAQAPAEANKATAKGAAPSAPPDLAALIECRKEVPDFLALQPAVRDPLKAVALGWKPLPQANPFMTEFALLEPISVFGHASSHIAFSGDSIMAILDLPDPRPLAHRLDLETGIDTPAKAIFGKQLRQTEQTDPASGQTLIQAIILNVSNVASHPGKTLVGCSYNLDTEDPAPAPTASATTAATAP

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Crispr_ID: NC_016147_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_11

3119302-3122681

TypeI

Consensus_repeat	Method
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	PILER-CR
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CRT

51 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_016147_11

>merge|NC_016147|11|3119302-3122681|PILER-CR,CRISPRCasFinder,CRT
GTCGCGCTCTCACGAGCGCGTGGATTGAAACACCAGCTCCAGCGTGCTAGCGATTGAGAAGATCACGTCGCGCTCTCACGAGCGCGTGGATTGAAACACCGCCGGTGGCCGGCCCGGCGAGATCGGCCGCGGTCGCGCTCTCACGAGCGCGTGGATTGAAACATCGCCTGGTGCCGCGCCACTGGCCGTGACGTCAAGTCGCGCTCTCACGAGCGCGTGGATTGAAACTCATACGGCAACAGGCTGGGGATGTAGCGGCCATGGTCGCGCTCTCACGAGCGCGTGGATTGAAACACTCCGTGGGCGCGGCAGGCCACGCTGCCTGACTGTCGCGCTCTCACGAGCGCGTGGATTGAAACGGCCTGGCCATGTTCTCTGTGCCGCATGACCAGGCGGTCGCGCTCTCACGAGCGCGTGGATTGAAACCTGTTCAAGTCCTTCTAAGGGGCCCCGCGATGAAGCGTCGCGCTCTCACGAGCGCGTGGATTGAAACCCGCATGCGGCCCGGCTGACGGCCAAGGGCGCGGGTCGCGCTCTCACGAGCGCGTGGATTGAAACTGTGCTATGCCGCTGGGCGGCGGATGGGGATGTGGCGTCGCGCTCTCACGAGCGCGTGGATTGAAACTGCCGCGGCGGCACGCGCCGGTTCTTCGCCGCCCGTCGCGCTCTCACGAGCGCGTGGATTGAAACATACTATGCCCGATTCCCCGCGCAGATTGTGCGTGGTCGCGCTCTCACGAGCGCGTGGATTGAAACTTCATCATGCGGCCGTCTGCGCCGCCGTCGGTCTGGTCGCGCTCTCACGAGCGCGTGGATTGAAACGCAATGCCGCGCTTGAGCTTGCCCACGTGTATCGCGTCGCGCTCTCACGAGCGCGTGGATTGAAACACCTTTCCAGCCGTCGGCCAGTACGACATCCGCGGTCGCGCTCTCACGAGCGCGTGGATTGAAACGCCGAAGCTGGTCCAACGCTTGCCGGCATCGTCGGTCGCGCTCTCACGAGCGCGTGGATTGAAACGCATTCAGCACGGCGGCTGCGACCCAGCAGGCCAGTCGCGCTCTCACGAGCGCGTGGATTGAAACACGACGCTCTCGGTCACCTTTGACGTGGACGGCGACGTCGCGCTCTCACGAGCGCGTGGATTGAAACCGACAAGCAGCCGAAGCACGACTACACGCAGCGAAAGTCGCGCTCTCACGAGCGCGTGGATTGAAACTCGACTGTCATGCCGGCATCGCCGGTGCGCAGAGCGTCGCGCTCTCACGAGCGCGTGGATTGAAACTCCTTGGCCAGGCTGCGCAAGGCCTGGCGCACGCGTCGCGCTCTCACGAGCGCGTGGATTGAAACTCGCCGATCTGGGTCGATGGCCAGCGGCATCCGCGTCGCGCTCTCACGAGCGCGTGGATTGAAACGCGTCCAGGTCGTAGAACCGCACGCCAGCCTGCGTCGCGCTCTCACGAGCGCGTGGATTGAAACTTCCACGGGTAGGTGATCGGCCCCAGGATGTCGTGTCGCGCTCTCACGAGCGCGTGGATTGAAACATCGTCGGCTACCGGGGCATGATCGACCTTGCGCGGTCGCGCTCTCACGAGCGCGTGGATTGAAACTCCCCGAATCCCTCGCCCAGCTCGCCCACCAGCGCCGTCGCGCTCTCACGAGCGCGTGGATTGAAACGTGATCTTCTGACCGGTCTCGAACGGCGGCCAGGTCGCGCTCTCACGAGCGCGTGGATTGAAACCTGCAACGGCCAGGACGTAGCTTGCATCCACCGGTCGCGCTCTCACGAGCGCGTGGATTGAAACTACGACGATGCAGCGGCATCTGACATCACAGAGGGGTCGCGCTCTCACGAGCGCGTGGATTGAAACTTCGTATCCGGCAGCCTGGCCGACTTGCCGACCAGGTCGCGCTCTCACGAGCGCGTGGATTGAAACAATTTCCCGCCACCTCAGCACTCGCGGTTGCGCCCAGGTCGCGCTCTCACGAGCGCGTGGATTGAAACCGCTTCGTCGGCACGACGATGGCGTTCGAGGACCGTCGCGCTCTCACGAGCGCGTGGATTGAAACCACGCTCGTTACACGGCCGTCCAGTGCCTGGACAAGTCGCGCTCTCACGAGCGCGTGGATTGAGACATTGTGTGCCCATCTGCCTGGCCCAGGCATCGGCGGTCGCGCTCTCACGAGCGCGTGGATTGAAACGGTTCCTGGCCCGCCGGCCAAGCGAGTTGCCGTGTCGCGCTCTCACGAGCGCGTGGATTGAAACTTCGGTTGATCGAAGGCGGGCGAGGGTGGGGCGGTGTCGCGCTCTCACGAGCGCGTGGATTGAAACGCCAGCAGCTTCGCCGTGGCGATGCGCAAGCGGTTGGTCGCGCTCTCACGAGCGCGTGGATTGAAACATCCCATTGCCCTCATGTCACGCCTCCACCGCATGTCGCGCTCTCACGAGCGCGTGGATTGAAACAGGTGCGGTTTGAGGTCGACGGCGACGGCAACGTGTCGCGCTCTCACGAGCGCGTGGATTGAAACTGCCAGCAGGCCGGGATCAGCCCTCGCCCCACAGGTCGCGCTCTCACGAGCGCGTGGATTGAAACACCGCCGGCGGCCACGTGCTGCTGATCGGATCCAGTCGCGCTCTCACGAGCGCGTGGATTGAAACGTCCTGCCCAAGGCCTCGGCCACGGTCATCGCCGGTCGCGCTCTCACGAGCGCGTGGATTGAAACCGCACGCGCGGCACCTCCGCGCACCAGCAGAACATGTCGCGCTCTCACGAGCGCGTGGATTGAAACAAGCGCAGCGTGTTCGACGACATCTGCGCTTTCGTCCCGCTCTCACGAGCGCGTGGATTGAAACAGTGGCGTATTGACTGCAACATGCGTGCCGATGCAAGTCGCGCTCTCACGAGCGCGTGGATTGAAACATCGTGTGAACCTCGGCCGACTTGTACGCACCAAGTCGCGCTCTCACGAGCGCGTGGATTGAAACTACAACTGGCGCTGTGCGATGCATCGTGACGGTCAGGTCGCGCTCTCACGAGCGCGTGGATTGAAACCTGCACAGCGCTTTGGAAGGTGACTTTGTGGACTGTCGCGCTCTCACGAGCGCGTGGATTGAAACCAACGCGAGAATAGGTTCTCGGGCCGGCCCGTAAACGTCGCGCTCTCACGAGCGCGTGGATTGAAACTCATCAGATGCTCCGGGAGTTTTGGTGTCTGGGAGTCGCGCTCTCACGAGCGCGTTGATTGAAACCATGCGCTTTCCCGCGCAGTGATCCGCGCGGCGCGCGTCGCGCTCTCACGAGCGCGTGGATTGAAACTCGACTGTCATGCCGGCATCGCCGGTGCGCAGAGGTCGCGCTCTCACGAGCGCGTCGCTTGCCCT

>NC_016147|11|1|3119302-3122616|PILER-CR
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACCAGCTCCAGCGTGCTAGCGATTGAGAAGATCAC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACCGCCGGTGGCCGGCCCGGCGAGATCGGCCGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATCGCCTGGTGCCGCGCCACTGGCCGTGACGTCAA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCATACGGCAACAGGCTGGGGATGTAGCGGCCATG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACTCCGTGGGCGCGGCAGGCCACGCTGCCTGACT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GGCCTGGCCATGTTCTCTGTGCCGCATGACCAGGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CTGTTCAAGTCCTTCTAAGGGGCCCCGCGATGAAGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CCGCATGCGGCCCGGCTGACGGCCAAGGGCGCGG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TGTGCTATGCCGCTGGGCGGCGGATGGGGATGTGGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TGCCGCGGCGGCACGCGCCGGTTCTTCGCCGCCC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATACTATGCCCGATTCCCCGCGCAGATTGTGCGTG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TTCATCATGCGGCCGTCTGCGCCGCCGTCGGTCTG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCAATGCCGCGCTTGAGCTTGCCCACGTGTATCGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACCTTTCCAGCCGTCGGCCAGTACGACATCCGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCCGAAGCTGGTCCAACGCTTGCCGGCATCGTCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCATTCAGCACGGCGGCTGCGACCCAGCAGGCCA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACGACGCTCTCGGTCACCTTTGACGTGGACGGCGAC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CGACAAGCAGCCGAAGCACGACTACACGCAGCGAAA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCGACTGTCATGCCGGCATCGCCGGTGCGCAGAGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCCTTGGCCAGGCTGCGCAAGGCCTGGCGCACGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCGCCGATCTGGGTCGATGGCCAGCGGCATCCGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCGTCCAGGTCGTAGAACCGCACGCCAGCCTGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TTCCACGGGTAGGTGATCGGCCCCAGGATGTCGT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATCGTCGGCTACCGGGGCATGATCGACCTTGCGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCCCCGAATCCCTCGCCCAGCTCGCCCACCAGCGCC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GTGATCTTCTGACCGGTCTCGAACGGCGGCCAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CTGCAACGGCCAGGACGTAGCTTGCATCCACCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TACGACGATGCAGCGGCATCTGACATCACAGAGGG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TTCGTATCCGGCAGCCTGGCCGACTTGCCGACCAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	AATTTCCCGCCACCTCAGCACTCGCGGTTGCGCCCAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CGCTTCGTCGGCACGACGATGGCGTTCGAGGACC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CACGCTCGTTACACGGCCGTCCAGTGCCTGGACAA
GTCGCGCTCTCACGAGCGCGTGGATTGAGAC	ATTGTGTGCCCATCTGCCTGGCCCAGGCATCGGCGGTC
GCGCTCTCACGAGCGCGTGGATTGAAACGGT	TCCTGGCCCGCCGGCCAAGCGAGTTGCCGTGTC
GCGCTCTCACGAGCGCGTGGATTGAAACTTC	GGTTGATCGAAGGCGGGCGAGGGTGGGGCGGTGTC
GCGCTCTCACGAGCGCGTGGATTGAAACGCC	AGCAGCTTCGCCGTGGCGATGCGCAAGCGGTTGGTC
GCGCTCTCACGAGCGCGTGGATTGAAACATC	CCATTGCCCTCATGTCACGCCTCCACCGCATGTC
GCGCTCTCACGAGCGCGTGGATTGAAACAGG	TGCGGTTTGAGGTCGACGGCGACGGCAACGTGTC
GCGCTCTCACGAGCGCGTGGATTGAAACTGC	CAGCAGGCCGGGATCAGCCCTCGCCCCACAGGTC
GCGCTCTCACGAGCGCGTGGATTGAAACACC	GCCGGCGGCCACGTGCTGCTGATCGGATCCAGTC
GCGCTCTCACGAGCGCGTGGATTGAAACGTC	CTGCCCAAGGCCTCGGCCACGGTCATCGCCGGTC
GCGCTCTCACGAGCGCGTGGATTGAAACCGC	ACGCGCGGCACCTCCGCGCACCAGCAGAACATGTC
GCGCTCTCACGAGCGCGTGGATTGAAACAAG	CGCAGCGTGTTCGACGACATCTGCGCTTTCGTC
CCGCTCTCACGAGCGCGTGGATTGAAACAGT	GGCGTATTGACTGCAACATGCGTGCCGATGCAAGTC
GCGCTCTCACGAGCGCGTGGATTGAAACATC	GTGTGAACCTCGGCCGACTTGTACGCACCAAGTC
GCGCTCTCACGAGCGCGTGGATTGAAACTAC	AACTGGCGCTGTGCGATGCATCGTGACGGTCAGGTC
GCGCTCTCACGAGCGCGTGGATTGAAACCTG	CACAGCGCTTTGGAAGGTGACTTTGTGGACTGTC
GCGCTCTCACGAGCGCGTGGATTGAAACCAA	CGCGAGAATAGGTTCTCGGGCCGGCCCGTAAACGTC
GCGCTCTCACGAGCGCGTGGATTGAAACTCA	TCAGATGCTCCGGGAGTTTTGGTGTCTGGGAGTC
GCGCTCTCACGAGCGCGTTGATTGAAACCAT	GCGCTTTCCCGCGCAGTGATCCGCGCGGCGCGCGTC
GCGCTCTCACGAGCGCGTGGATTGAAAC

>NC_016147|11|11|3119302-3122681|CRISPRCasFinder
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACCAGCTCCAGCGTGCTAGCGATTGAGAAGATCAC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACCGCCGGTGGCCGGCCCGGCGAGATCGGCCGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATCGCCTGGTGCCGCGCCACTGGCCGTGACGTCAA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCATACGGCAACAGGCTGGGGATGTAGCGGCCATG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACTCCGTGGGCGCGGCAGGCCACGCTGCCTGACT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GGCCTGGCCATGTTCTCTGTGCCGCATGACCAGGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CTGTTCAAGTCCTTCTAAGGGGCCCCGCGATGAAGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CCGCATGCGGCCCGGCTGACGGCCAAGGGCGCGG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TGTGCTATGCCGCTGGGCGGCGGATGGGGATGTGGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TGCCGCGGCGGCACGCGCCGGTTCTTCGCCGCCC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATACTATGCCCGATTCCCCGCGCAGATTGTGCGTG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TTCATCATGCGGCCGTCTGCGCCGCCGTCGGTCTG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCAATGCCGCGCTTGAGCTTGCCCACGTGTATCGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACCTTTCCAGCCGTCGGCCAGTACGACATCCGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCCGAAGCTGGTCCAACGCTTGCCGGCATCGTCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCATTCAGCACGGCGGCTGCGACCCAGCAGGCCA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACGACGCTCTCGGTCACCTTTGACGTGGACGGCGAC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CGACAAGCAGCCGAAGCACGACTACACGCAGCGAAA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCGACTGTCATGCCGGCATCGCCGGTGCGCAGAGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCCTTGGCCAGGCTGCGCAAGGCCTGGCGCACGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCGCCGATCTGGGTCGATGGCCAGCGGCATCCGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCGTCCAGGTCGTAGAACCGCACGCCAGCCTGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TTCCACGGGTAGGTGATCGGCCCCAGGATGTCGT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATCGTCGGCTACCGGGGCATGATCGACCTTGCGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCCCCGAATCCCTCGCCCAGCTCGCCCACCAGCGCC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GTGATCTTCTGACCGGTCTCGAACGGCGGCCAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CTGCAACGGCCAGGACGTAGCTTGCATCCACCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TACGACGATGCAGCGGCATCTGACATCACAGAGGG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TTCGTATCCGGCAGCCTGGCCGACTTGCCGACCAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	AATTTCCCGCCACCTCAGCACTCGCGGTTGCGCCCAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CGCTTCGTCGGCACGACGATGGCGTTCGAGGACC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CACGCTCGTTACACGGCCGTCCAGTGCCTGGACAA
GTCGCGCTCTCACGAGCGCGTGGATTGAGAC	ATTGTGTGCCCATCTGCCTGGCCCAGGCATCGGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GGTTCCTGGCCCGCCGGCCAAGCGAGTTGCCGT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TTCGGTTGATCGAAGGCGGGCGAGGGTGGGGCGGT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCCAGCAGCTTCGCCGTGGCGATGCGCAAGCGGTTG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATCCCATTGCCCTCATGTCACGCCTCCACCGCAT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	AGGTGCGGTTTGAGGTCGACGGCGACGGCAACGT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TGCCAGCAGGCCGGGATCAGCCCTCGCCCCACAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACCGCCGGCGGCCACGTGCTGCTGATCGGATCCA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GTCCTGCCCAAGGCCTCGGCCACGGTCATCGCCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CGCACGCGCGGCACCTCCGCGCACCAGCAGAACAT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	AAGCGCAGCGTGTTCGACGACATCTGCGCTTTC
GTCCCGCTCTCACGAGCGCGTGGATTGAAAC	AGTGGCGTATTGACTGCAACATGCGTGCCGATGCAA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATCGTGTGAACCTCGGCCGACTTGTACGCACCAA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TACAACTGGCGCTGTGCGATGCATCGTGACGGTCAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CTGCACAGCGCTTTGGAAGGTGACTTTGTGGACT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CAACGCGAGAATAGGTTCTCGGGCCGGCCCGTAAAC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCATCAGATGCTCCGGGAGTTTTGGTGTCTGGGA
GTCGCGCTCTCACGAGCGCGTTGATTGAAAC	CATGCGCTTTCCCGCGCAGTGATCCGCGCGGCGCGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCGACTGTCATGCCGGCATCGCCGGTGCGCAGAG
GTCGCGCTCTCACGAGCGCGTCGCTTGCCCT

>NC_016147|11|2|3119302-3122681|CRT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACCAGCTCCAGCGTGCTAGCGATTGAGAAGATCAC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACCGCCGGTGGCCGGCCCGGCGAGATCGGCCGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATCGCCTGGTGCCGCGCCACTGGCCGTGACGTCAA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCATACGGCAACAGGCTGGGGATGTAGCGGCCATG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACTCCGTGGGCGCGGCAGGCCACGCTGCCTGACT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GGCCTGGCCATGTTCTCTGTGCCGCATGACCAGGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CTGTTCAAGTCCTTCTAAGGGGCCCCGCGATGAAGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CCGCATGCGGCCCGGCTGACGGCCAAGGGCGCGG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TGTGCTATGCCGCTGGGCGGCGGATGGGGATGTGGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TGCCGCGGCGGCACGCGCCGGTTCTTCGCCGCCC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATACTATGCCCGATTCCCCGCGCAGATTGTGCGTG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TTCATCATGCGGCCGTCTGCGCCGCCGTCGGTCTG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCAATGCCGCGCTTGAGCTTGCCCACGTGTATCGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACCTTTCCAGCCGTCGGCCAGTACGACATCCGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCCGAAGCTGGTCCAACGCTTGCCGGCATCGTCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCATTCAGCACGGCGGCTGCGACCCAGCAGGCCA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACGACGCTCTCGGTCACCTTTGACGTGGACGGCGAC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CGACAAGCAGCCGAAGCACGACTACACGCAGCGAAA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCGACTGTCATGCCGGCATCGCCGGTGCGCAGAGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCCTTGGCCAGGCTGCGCAAGGCCTGGCGCACGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCGCCGATCTGGGTCGATGGCCAGCGGCATCCGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCGTCCAGGTCGTAGAACCGCACGCCAGCCTGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TTCCACGGGTAGGTGATCGGCCCCAGGATGTCGT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATCGTCGGCTACCGGGGCATGATCGACCTTGCGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCCCCGAATCCCTCGCCCAGCTCGCCCACCAGCGCC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GTGATCTTCTGACCGGTCTCGAACGGCGGCCAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CTGCAACGGCCAGGACGTAGCTTGCATCCACCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TACGACGATGCAGCGGCATCTGACATCACAGAGGG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TTCGTATCCGGCAGCCTGGCCGACTTGCCGACCAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	AATTTCCCGCCACCTCAGCACTCGCGGTTGCGCCCAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CGCTTCGTCGGCACGACGATGGCGTTCGAGGACC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CACGCTCGTTACACGGCCGTCCAGTGCCTGGACAA
GTCGCGCTCTCACGAGCGCGTGGATTGAGAC	ATTGTGTGCCCATCTGCCTGGCCCAGGCATCGGCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GGTTCCTGGCCCGCCGGCCAAGCGAGTTGCCGT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TTCGGTTGATCGAAGGCGGGCGAGGGTGGGGCGGT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GCCAGCAGCTTCGCCGTGGCGATGCGCAAGCGGTTG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATCCCATTGCCCTCATGTCACGCCTCCACCGCAT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	AGGTGCGGTTTGAGGTCGACGGCGACGGCAACGT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TGCCAGCAGGCCGGGATCAGCCCTCGCCCCACAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ACCGCCGGCGGCCACGTGCTGCTGATCGGATCCA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	GTCCTGCCCAAGGCCTCGGCCACGGTCATCGCCG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CGCACGCGCGGCACCTCCGCGCACCAGCAGAACAT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	AAGCGCAGCGTGTTCGACGACATCTGCGCTTTC
GTCCCGCTCTCACGAGCGCGTGGATTGAAAC	AGTGGCGTATTGACTGCAACATGCGTGCCGATGCAA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	ATCGTGTGAACCTCGGCCGACTTGTACGCACCAA
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TACAACTGGCGCTGTGCGATGCATCGTGACGGTCAG
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CTGCACAGCGCTTTGGAAGGTGACTTTGTGGACT
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	CAACGCGAGAATAGGTTCTCGGGCCGGCCCGTAAAC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCATCAGATGCTCCGGGAGTTTTGGTGTCTGGGA
GTCGCGCTCTCACGAGCGCGTTGATTGAAAC	CATGCGCTTTCCCGCGCAGTGATCCGCGCGGCGCGC
GTCGCGCTCTCACGAGCGCGTGGATTGAAAC	TCGACTGTCATGCCGGCATCGCCGGTGCGCAGAG
GTCGCGCTCTCACGAGCGCGTCGCTTGCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_014161877.1\|3130265_3131195_-\|protoheme-IX-farnesyltransferase	unknown	unknown	gnl\|CDD\|235293
NC_016147.2\|WP_014161879.1\|3132391_3132961_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238207
NC_016147.2\|WP_014161874.1\|3125980_3127705_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NC_016147.2\|WP_014161875.1\|3127974_3128937_+\|bile-acid:sodium-symporter	unknown	unknown	gnl\|CDD\|372642
NC_016147.2\|WP_014161869.1\|3117784_3118819_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_016147.2\|WP_014161868.1\|3117149_3117782_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_016147.2\|WP_014161862.1\|3109793_3110441_+\|DUF2059-domain-containing-protein	unknown	unknown	gnl\|CDD\|225725
NC_016147.2\|WP_014161870.1\|3118835_3119126_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_016147.2\|WP_014161876.1\|3129083_3130133_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380530
NC_016147.2\|WP_014161872.1\|3124311_3124758_+\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NC_016147.2\|WP_148268223.1\|3125007_3125928_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NC_016147.2\|WP_014161867.1\|3116236_3117127_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_016147.2\|WP_014161864.1\|3111301_3113536_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_016147.2\|WP_014161866.1\|3114404_3116240_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_016147.2\|WP_014161865.1\|3113733_3114408_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_016147.2\|WP_002808376.1\|3123916_3124132_+\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NC_016147.2\|WP_014161871.1\|3122728_3123766_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NC_016147.2\|WP_014161861.1\|3109233_3109665_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NC_016147.2\|WP_014161878.1\|3131191_3132373_-\|COX15/CtaA-family-protein	unknown	unknown	gnl\|CDD\|367131
NC_016147.2\|WP_014161863.1\|3110448_3111159_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_014161877.1\|3130265_3131195_-\|protoheme-IX-farnesyltransferase	gnl\|CDD\|235293	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.	2.04223e-134
NC_016147.2\|WP_014161879.1\|3132391_3132961_-\|hypothetical-protein	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	0.00043828
NC_016147.2\|WP_014161874.1\|3125980_3127705_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NC_016147.2\|WP_014161875.1\|3127974_3128937_+\|bile-acid:sodium-symporter	gnl\|CDD\|372642	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137). These family members are 7TM putative membrane transporter proteins. The family is similar to the SBF family of bile-acid symporters, pfam01758.	7.52096e-112
NC_016147.2\|WP_014161869.1\|3117784_3118819_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_016147.2\|WP_014161868.1\|3117149_3117782_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.36622e-41
NC_016147.2\|WP_014161862.1\|3109793_3110441_+\|DUF2059-domain-containing-protein	gnl\|CDD\|225725	COG3184, COG3184, Uncharacterized protein conserved in bacteria [Function unknown].	1.82955e-15
NC_016147.2\|WP_014161870.1\|3118835_3119126_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.30364e-33
NC_016147.2\|WP_014161876.1\|3129083_3130133_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380530	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.	2.09651e-81
NC_016147.2\|WP_014161872.1\|3124311_3124758_+\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	8.01223e-59
NC_016147.2\|WP_148268223.1\|3125007_3125928_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	1.11339e-41
NC_016147.2\|WP_014161867.1\|3116236_3117127_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.4198e-151
NC_016147.2\|WP_014161864.1\|3111301_3113536_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	8.3168e-56
NC_016147.2\|WP_014161866.1\|3114404_3116240_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_016147.2\|WP_014161865.1\|3113733_3114408_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	9.93392e-120
NC_016147.2\|WP_002808376.1\|3123916_3124132_+\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.35008e-15
NC_016147.2\|WP_014161871.1\|3122728_3123766_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NC_016147.2\|WP_014161861.1\|3109233_3109665_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	6.13363e-66
NC_016147.2\|WP_014161878.1\|3131191_3132373_-\|COX15/CtaA-family-protein	gnl\|CDD\|367131	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein. This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast.	9.13301e-51
NC_016147.2\|WP_014161863.1\|3110448_3111159_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	1.91279e-145

>NC_016147.2|WP_014161870.1|3118835_3119126_+|CRISPR-associated-endonuclease-Cas2
MMVLVSYDVSTIAPGGEKRLRRVAKACRDVGQRVQYSVFEIEVEPAQWVQLRQRLCDLIDPECDSLRFYQLGAKWEGRVEHIGAKPSVNFKGPLIF
>NC_016147.2|WP_014161869.1|3117784_3118819_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRQLNTLYATTDGAWLRKDGANIVLEVERQERARLPVHMLESLVCIGRVAVSPQLLGFCSAQGISICYLTPQGRFLARVEGPVSGNVLLRREQYRRSDDPSRCAAIVRNLLAGKIHNQRAVLARGWRDHGDRLADAPAFQHALKRLRRIPQRLLLENDVDILRGLEGEAAQAYFGVFDQLVRAESPLLRFGGRNRRPPRDALNALLSFLYTLLTHDCRSALETVGLDPAVGFLHRDRPGRPSLALDLAEELRPLLGERLALSLINRRQLNERDFQVFDNGAVQLKDEARKNVLVAYQERKREQLQHAFLGEKVDIGLLPFVQAQLLARHLRGDLDGYPPFLWQ
>NC_016147.2|WP_014161868.1|3117149_3117782_+|CRISPR-associated-protein-Cas4
MDDEDLIPLSALQHYLYCPRQCALIHLEQQWKENRQTAEGRLLHERADVPQAERRRGVRTVTAMPLLNLQLGITGKADVVEFHHTESGERVFPVEYKRGRPKSHRADEVQLCAQGLCLEAMLDTHVYAGALFYGQTRRRKDVTFDQELRALTRATITGTRAMLALGKTPSARYEAKRCDPCSLLDLCQPRLLGRRSVQAWLQRQLEHEEE
>NC_016147.2|WP_014161867.1|3116236_3117127_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSAIAHRYEFVYLFDVTNGNPNGDPDAGNLPRLDPETNRGLVTDVALKRKIRNYVALEKENEAGYAIYMQEKAILNQQHQKSWEALGIAPDVKDGFKKLPKDEAKARELTAWMCGNFFDVRTFGAVMTTGVNAGQVRGPVQLAFATSVEPVLPLEVSITRVAVTTEKESEAQSGDNRTMGRKHIIPYGLYRAHGFVSAKLAERTGFSEDDLQLLWRALTNLFEHDRSAARGEMAARKLVAFEHEHPMGNAPAHALFDKVKVTRVEGQSETPARGFADYRVHIDRELPVGVTLIEVF
>NC_016147.2|WP_014161866.1|3114404_3116240_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILSALDEYYRRLSDDRESGIAAPGYSQEKIGYAIVLDADGRVVDVQDLRDSSGKKPAPRLLGVPQPEKRTVAVKSNFLWDKTSYVLGIGKNTARTQQDHAAFKTLHRQALAGSEDPGLKALLAFLDDWTPAQFADNPLFSRHGEALLDANLVFRFDDGTQQFLHQRQAARDAWNRQQALGADGVRGMCLVTGQQAPMARLHPAIKGVNGAQSSGASIVSFNLDAFTSYGKSQGENAPVSEQAAFAYTTALNHLLRRTEDNHQRLQLGDTTVVFWAQGAGAQAAEDFVATFFGTQQPDSEGLDDAQATRRLAQALEQLRQLRPLRELDSRLDEDTRIFVLGLAPNASRLSIRFWETTSLSSFANRLADHYRDLALEPSAWRRPPTPQYLALQTAPVYGENGRPKAEDVPPLLAGELTRAILTGMRYPRSILGAIVMRFRADGQISPLRVALCKAVLAREARLGMHHGTSTNKGEPPVSLDTSNTDPGYLLGRLFSSLENLQRAALGAQVNATIRDRYYGAASATPASIFPVLLRNAQNHFGKLRKDKAGLAMSLEKEIGQIVDSLPPSLPRSLLIEAQGRFAIGYYHQTQARFARSGNQDAPLTDSEGETA
>NC_016147.2|WP_014161865.1|3113733_3114408_+|type-I-C-CRISPR-associated-protein-Cas5
MSYGVKLHVWGERALFTRPEMKVERVSYDVITPSAARGILEAIHWKPAIRWVVDGIQVLRPVRFESIRRNEVGGKLSAASVGRAIRAGRTDGLVNYVEEDRQQRAATLLRDVGYVIAAHFELTARAGPEDSVGKHLDIFNRRARRGQCFQAPCLGTREFPASFALVENGYDLPIADASLQGERDLGWMLHDIDFADGMTPRFFRARMVDGLIQVPPPGDEGVHG
>NC_016147.2|WP_014161864.1|3111301_3113536_+|CRISPR-associated-endonuclease-Cas3''
MEFYAHSTDRKDCSDWQGLRAHLLGVAERASTNAAPFGGQELGWIAGALHDLGKYTRRFQDRLRGEVPRVDHATWGARIAQQRYKGLGTLMAYAIAGHHAGLANGTLGEARSCLRERLSEDYLLRELPPLLPEWEHELELPQRLALPTRFSSVSTRPAFQFSLLARMVFSCLVDADFVDTDNFYRRIEGRDPRPERTGPSLDVLRAKLDAHLVSLPRQGGINPLRADILKHVRAQATHKPGLFSLTVPTGGGKTLASLAFALDHAIAHGLRRVIYVVPFTSIIEQTAAVFRSVFGELGEDAVLEHHSAFFDDPKSELQSKEKRHLAMENWDAPIIVTTAVQFFESLFADRPARCRKLHNIAASVVILDEAQTLPLHLLRPCMQALDELALNYRVSMMLCTATQPALGKADGFKDGLEGVRELAPDPPGLYRQLKRVSVQHAGPLDDAALAGHLRSREQILCIVNNRRHARALFDAIADLPGACHLTTLMYARHRSQVLQDLRTRLKAGQPCRLVSTSLIEAGVDVSFPAVLRAEAGLDSIAQAAGRCNRNMEWAVEDSQVLVFESPDWAPPKELKLFAEAFRMIERRHRADLLSLEAVTDYFRELYWRRDGQLGEMLLQLFDGAIVDDLPLETLAARFRMIEANMRPVIVPYDPQTGAEDPFVASVLRDLEYAPGAARKLQPFLVQVPRQGYDALWNAGAIQPVAPERYGEQFVRLVNPRLYHPKFGLHWDDNPQFLAAEGLVG
>NC_016147.2|WP_014161863.1|3110448_3111159_-|uracil-DNA-glycosylase
MSDPEPRIQLEPSWKARVGDWLLRPEMQQLSAFLRQRKAAGVHVFPPGPQIFAAFEATPFDKVKVVILGQDPYHGAGQAHGLCFSVPPGVPVPPSLQNIYKELASDVGVAPPDHGCLGPWARRGVLLLNAVLTVEEGRPGAHRGKGWEGFTDQVIQALAAEREHLVFLLWGSYAQAKGRVIDPARHRLLKAPHPSPLSAHRGFLGCRHFSQANQYLERHGLGAVDWTLPRRAQLEA
>NC_016147.2|WP_014161862.1|3109793_3110441_+|DUF2059-domain-containing-protein
MPYPRFAPVLLLMSLMAAIAPPALAREPTDEEIERLLTASRAQSMLAGIQPQVEAMQREQFAQLTQGKTLSPEQQAEIQQIQLKTSNIVRQALAWESMRPVYLDVYRKTFDDDDVKAMTRFYESRAGQHLLDRTPVMMQTLMVAIQQKMIPQLEALQAEVKTVSAEPLPAPPVSPPEARKKPATSSTRKKSTSSKKSSSSKSGTATKTTTPQKEP
>NC_016147.2|WP_014161861.1|3109233_3109665_-|aminoacyl-tRNA-hydrolase
MAAGSLQITPHLTIPDDELVERFVRASGAGGQNVNKVATAVELRFDVAGSPSLPELLRSRLLARRDRRLTDEGVLVIEAQRFRTQDRNRQDARERLAQIIAQGLSVPKPRVATRPTRASRLRRLDAKKTRSQVKRNRNTRDWD
>NC_016147.2|WP_014161871.1|3122728_3123766_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MRVLGIETSCDETGVAVYDTALAGAAGLRAHAVYSQIALHARYGGVVPELASRDHVRKLLPLIRQTLDQAGLHARDLDGVAYTAGPGLVGALLVGAGVARALAWALDLPALGVHHMEGHLLAPLMEDDPPQAPFVALLVSGGHTQLVAVEQIGRYRLLGQTLDDAAGEAFDKTAKMMGLPYPGGPQLASLAEQGTPGRYRFARPMTDRPGLDFSFSGLKTQVLLAWRDSDQSDATRRDIARGFEDAVVDTLVIKCQRALEAAGSKVLVVAGGVGANQRLRARLHESAARHGGRVCFPRPALCTDNGAMIAFAGALRLQAGQHDDAQVKVTPRWDMATLQALAPAA
>NC_016147.2|WP_002808376.1|3123916_3124132_+|30S-ribosomal-protein-S21
MPSVKVRENEPFEFALRRFKRTCEKAGVLAETRKREFYEKPTQERKRKAAAAVKRQLRRSSRDVTKRQRLY
>NC_016147.2|WP_014161872.1|3124311_3124758_+|GatB/YqeY-domain-containing-protein
MSLKARLTDDMKIAMKAGEKQRLGVIRLINAAIKQREVDERTELDDAAVLAVLEKMVKQRKDSVSQYAAAGREDLAAIERAEIEVIQTYLPAQLDQAAIETAIETAIAQTGASSPADIGKLMAVLKPQLAGQADMGLVSRLIKQKLAG
>NC_016147.2|WP_148268223.1|3125007_3125928_+|YihY/virulence-factor-BrkB-family-protein
MARRFSDSDLMTQAAALAFYALLSLAPLLVLLLWLTASAYPSAQEALMKQIGALAGNEARGVAQAVLDNAKARPSLGSLAGIWSTLLLFFGATAVFARLQAALNLIFSTDAQELGGGLLAWLKKRVFSFGVVLALGFVLLVSMLASTAVQVLFANVPSLLPVLGNAVTLALYILAFGFLYRYLPDRTVEWRQALLGGAITAGLFILGRYAIGLYLVRTEPGSAYGSMGALVIMLVWIYYATVVFFVGALITAVIDERVDAHAARKQARLAAERGQHEGPPAALDPDRDDLPAQGMPAQQHDPAPRT
>NC_016147.2|WP_014161874.1|3125980_3127705_+|DNA-primase
MARIPDAFIDDLLARTDIVEVVGARVPLKKQGKEYAARCPFHDERSASFTVSPTKQFYHCFGCGAHGTAISFLINYDRLEFLDAVDELARRAGMEVPREAVQHQQNQDSRDLYAVLDASARFFQRQLAGSDKARAYLEARGVDEATRTLFGIGYAPDGYSALKDALGSDARRIQLLERGGMFSRNERGHVYDKFRDRVMFPIADRRGRTIAFGGRVLDKQDGPKYLNSPETPLFHKGRELYGLWQVRQVNQKIDRLVVVEGYMDVVSLFQFGVTCAVATLGTATTPDHAELLFRNAADVYFCFDGDAAGQRAGWRALESVLPRMKDGRQALFLFLPNGEDPDSIVRKEGAEGFAARLAQATPLSQFFFDELSKEINLGTLDGKARLAEKAKPLLAQIPDGAFGDLMRAQLTRITGVGANPPPAPRRVPPRSTARGPQQRPSLVRSAIVRVLHAPSLALDVPTPYTFAGLRQPGVELLIELLDIIRTRPDITPGALLEHFAEREELPALQQLMIQDLPGEEPAWRQELHDAVIQLEKQTLQQRLDQLLAKQRAQGLDETDKYELRELLKIRAGGH
>NC_016147.2|WP_014161875.1|3127974_3128937_+|bile-acid:sodium-symporter
MNLLKRLRIDPFTLTLLGTVLLASLLPVHGTAAVWMDHITDIAIAALFFLHGARLSREAVLAGALHWRLHVTILACTFVLFPLLGLALHPLASHLLTPGLALGLLFLCALPSTVQSSIAFTSMAGGNVPAAVVSASASSLLGVFLTPVILALIAGGQGPMGSPLESIGKILLQLLVPFVAGHLLRPWIGGWVARRRAILRYTDQGTILLVVYTAFSAAVSEGLWRDTPLRSLLAVVVLAALLLGVAMTLVAFLARRLGFERADQIAIVFCGSKKSLATGVPMAKVMFASSALGAIVLPVMIYHQLQLIVCAVVAQRYARQ
>NC_016147.2|WP_014161876.1|3129083_3130133_-|LacI-family-DNA-binding-transcriptional-regulator
MSAERRRTKRSPRFTEIALEAGVSPSTVDRVLNERGSVSESLRRRVVEAAKRLGTNRLLPDVRHGVLHFDVVLVHSEVAHFRRINNALERYSGLIGPRVTVHRSAWGERDDERLAQFLEQPPYPRHGLLIVARDSERIRQALHVVNAAGTPVVTLSSDITGVQRLAYVGIDNTLAGRTAGYLAGRFTRSAGKVWIAVSSMEFRAHIERVEGFTQIVTEQFPHLDPLPPVEMFDDVERAYAQLHDALRHHHDIVAIYNTGSASAGIRRALRRHPLATSPVWIGHEATREHADLLRAGDMAATLDQDPEGQVLSGLQHLLHANEELEQAPEGRTRFRLITPENLGQFELFA
>NC_016147.2|WP_014161877.1|3130265_3131195_-|protoheme-IX-farnesyltransferase
MSAWRFSFRDYWDLTKPRVVALIVFTAFVGMILAIPGLPDATQLRHGLLGFLGIWLAASAAAAINQLLDARIDAQMARTAWRPLVVGKVKPWQVLVFALVLTAASMAILVLWVNVVTAVLTFCSLIGYAVIYTVYLKRATPQNIVIGGLAGATPPLLGWAAVTGMQGPWDWGHSLLLVLIIFVWTPPHFWALAIFRREDYAKALIPMLPVTHGVVYTRWQILFYTVLLVEATLLPVLFGLSGLFYLGGALVLGARFLWYAWKLLDPPDEFFAMRTFRYSIVYLMALFAFLLVDHWLGPLLPGIAGRRLG
>NC_016147.2|WP_014161878.1|3131191_3132373_-|COX15/CtaA-family-protein
MPASLRLPFRHFHRIAWLAVLMTASTIVFGGFVRLSDAGLSCPDWPTCYGRAAWPQAPSEVVDHAATRIRPLETHKAWREQVHRFLAGMLSIEIFGLALMAVRRRRLGVAGVIVAAVLVAAAIPLYMKGLHVAASAVALAGEGLLLVAAWRWSSASAPGGGGDLSRVAVLTLAMIILQALLGMWTVTWLLKPIVVMGHLLGGLATFALLVWMAWRATQLPIRLGEADLLKRWLGIGLGLLVAQIALGGWVSSNYAALACGGGSWRMENFPQCVGQWWPPHDFREGFTLWRGIGVDYEGGVLDGASRIAIQMAHRLMAVVVFCWLLACSLRLWRVPSMRGWAVGLVLALLAQVALGVLNVKLALPLTVAVLHNAGAVLLTFLLVSLLARLKGPA
>NC_016147.2|WP_014161879.1|3132391_3132961_-|hypothetical-protein
MTLLDVPPGRGRGRLILLGLFVLFFGSVLGAGVLRFSGWQPDGMKNHGQLLHPPGDVRALNPALADGGTYRWQQPQRTWRIALAPPVACVADCVALSRQLDTVWRLFGHNADQVHILWIGTPPPGAAQPSSLRVLARDPALLAALPRVDDPAGVPVYVIDPNGFVVMRFAPGFDPAELRADLAKLLKLI

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Crispr_ID: NC_016147_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_12

3204864-3204972

Orphan

Consensus_repeat	Method
CGCCGCCGCTGCGGATGGGGGCCCGGTGAAGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016147_12

>merge|NC_016147|12|3204864-3204972|CRISPRCasFinder
CGCCGCCGCTGCGGATGGGGGCCCGGTGAAGCCAACAGCAAGAGCAAGGGCAAAAGCCACAGCCGCAGCCACAGCCGCCGCCGCTGCGGATGGGGACCCGGTGAAGCCA

>NC_016147|12|12|3204864-3204972|CRISPRCasFinder
CGCCGCCGCTGCGGATGGGGGCCCGGTGAAGCCA	ACAGCAAGAGCAAGGGCAAAAGCCACAGCCGCAGCCACAGC
CGCCGCCGCTGCGGATGGGGACCCGGTGAAGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_014161937.1\|3193515_3194760_-\|DUF819-family-protein	unknown	unknown	gnl\|CDD\|114410
NC_016147.2\|WP_014161947.1\|3206751_3208053_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NC_016147.2\|WP_043291464.1\|3211741_3212281_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NC_016147.2\|WP_193384088.1\|3204015_3204480_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_043291465.1\|3214192_3215062_-\|tryptophan-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|188272
NC_016147.2\|WP_043291457.1\|3192855_3193116_+\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
NC_016147.2\|WP_014161945.1\|3205081_3205933_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_016147.2\|WP_043291459.1\|3195559_3196345_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NC_016147.2\|WP_052299827.1\|3210553_3211663_-\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|225726
NC_016147.2\|WP_014161949.1\|3208713_3210012_-\|homogentisate-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|235421
NC_016147.2\|WP_014161941.1\|3198067_3200977_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_016147.2\|WP_014161938.1\|3194843_3195563_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350616
NC_016147.2\|WP_193384103.1\|3206065_3206755_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|226309
NC_016147.2\|WP_014161948.1\|3208161_3208710_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014161943.1\|3202836_3203934_+\|dipeptide-epimerase	unknown	unknown	gnl\|CDD\|239435
NC_016147.2\|WP_014161940.1\|3196391_3197999_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_016147.2\|WP_043290748.1\|3210045_3210444_-\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NC_016147.2\|WP_014161942.1\|3201430_3202840_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|378991
NC_016147.2\|WP_014161936.1\|3193112_3193439_+\|Na+/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
NC_016147.2\|WP_083833575.1\|3212301_3213936_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_014161937.1\|3193515_3194760_-\|DUF819-family-protein	gnl\|CDD\|114410	pfam05684, DUF819, Protein of unknown function (DUF819). This family contains proteins of unknown function from archaeal, bacterial and plant species.	2.35409e-107
NC_016147.2\|WP_014161947.1\|3206751_3208053_+\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.92509e-60
NC_016147.2\|WP_043291464.1\|3211741_3212281_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	1.84434e-19
NC_016147.2\|WP_043291465.1\|3214192_3215062_-\|tryptophan-2,3-dioxygenase	gnl\|CDD\|188272	TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase. Members of this family are tryptophan 2,3-dioxygenase, as confirmed by several experimental characterizations, and by conserved operon structure for many of the other members. This enzyme represents the first of a two-step degradation to L-kynurenine, and a three-step pathway (via kynurenine) to anthranilate plus alanine. [Energy metabolism, Amino acids and amines].	3.44259e-130
NC_016147.2\|WP_043291457.1\|3192855_3193116_+\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	1.45952e-28
NC_016147.2\|WP_014161945.1\|3205081_3205933_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.76404e-51
NC_016147.2\|WP_043291459.1\|3195559_3196345_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	7.31252e-54
NC_016147.2\|WP_052299827.1\|3210553_3211663_-\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|225726	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only].	4.36241e-141
NC_016147.2\|WP_014161949.1\|3208713_3210012_-\|homogentisate-1,2-dioxygenase	gnl\|CDD\|235421	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional.	0
NC_016147.2\|WP_014161941.1\|3198067_3200977_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	4.59406e-29
NC_016147.2\|WP_014161938.1\|3194843_3195563_-\|M15-family-metallopeptidase	gnl\|CDD\|350616	cd14817, D-Ala-D-Ala_dipeptidase_VanX, D-Ala-D-Ala dipeptidase VanX. D-Ala-D-Ala dipeptidase (also known as D-alanyl-D-alanine dipeptidase vanX; VanX; EC 3.4.13.22) is a Zn2+-dependent enzyme that mediates resistance to the antibiotic vancomycin in Enterococci and other bacteria (both Gram-positive and Gram-negative). It is part of a gene cluster that affects cell-wall biosynthesis. The operon triggers the termination of peptidoglycan precursors by D-Ala-(R)-lactate instead of D-Ala-D-Ala dipeptides. The enzyme is stereospecific, as L-Ala-L-Ala, D-Ala-L-Ala and L-Ala-D-Ala are not substrates. It belongs in the MEROPS peptidase family M15, subfamily D.	1.6466e-119
NC_016147.2\|WP_193384103.1\|3206065_3206755_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	1.23347e-28
NC_016147.2\|WP_014161943.1\|3202836_3203934_+\|dipeptide-epimerase	gnl\|CDD\|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	3.13716e-136
NC_016147.2\|WP_014161940.1\|3196391_3197999_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.24186e-57
NC_016147.2\|WP_043290748.1\|3210045_3210444_-\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	9.63136e-51
NC_016147.2\|WP_014161942.1\|3201430_3202840_+\|SH3-domain-containing-protein	gnl\|CDD\|378991	pfam12913, SH3_6, SH3 domain (SH3b1 type). This domain appears to be an SH3 domain of the SH3b1-type, and is just C-terminal to an N-terminal domain that is probably the stabilizing domain for the structure from Desulfovibrio vulgaris DVU_0896, Structure 3m1u, which is a four-domain protein. The next domain is an SH3b2 and the last, the C-terminal region, is the catalytic domain of the cysteine-peptidase type, ie family NLPC_P60, pfam00877 (details derived from TOPSAN).	9.68523e-15
NC_016147.2\|WP_014161936.1\|3193112_3193439_+\|Na+/H+-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	2.56274e-25
NC_016147.2\|WP_083833575.1\|3212301_3213936_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.62975e-152

>NC_016147.2|WP_193384088.1|3204015_3204480_+|hypothetical-protein
MILILLLVLLLVLLLVLLLVLLLVLLLVLLLVLLLVLLLVLLLVLLLVLLLVLLLVLLLILLLIPLLTLLLLLPLTLTLRLILPLLTRGPSAAAGSAGKYPTGATHGCVAFADGTGCPIRESRPNLQTRSAQRGGRAGGVCFLLVTFLCTSKEK
>NC_016147.2|WP_014161943.1|3202836_3203934_+|dipeptide-epimerase
MKITDIQLGMLRVPLKTPFKTALRIVDTVEDVVVLIRTDTGHTGHGEAAATAVITGDTLGSIITAIDSFIKPRLIGQDVANLNQLTALVQSALERNTSAKAAVEIALYDLWAQLYGAPLYRLLGGGDPVITTDITISVDYIDKMVADARAALERGFESLKIKVGKDLGLDIERVKAIHAAVEGRALLRLDANQGWTAKQAVYAMHKLEEAGVVLELLEQPVKAADIEGLKYVTDRVNTPVMADESVFAPQQVFDLIQRRAADIINIKLMKTGGISNAIRIADIAALYGVDCMIGCMIESSISVAAAVHVAVAKADVITRIDLDGPSLGQFNPVVGGVLFNESEISIPDAPGLGIQEIRGLQMLSP
>NC_016147.2|WP_014161942.1|3201430_3202840_+|SH3-domain-containing-protein
MLWLALLVATPTVAGVLAPQVPVDPVTGVVGVDPPKLTAEYWIARQPQPDQQLLDRAGIAAQNARMRAEDPAIHDLRALPASMPAGMVRKEIQALSAAPTRTLYDMHGQALDAAALDALQASLALEAVPARVAVRYGLVTQRADLRTFPTTRRVFSTTENHDIDRFQESALFPGDAVAVLHESRDRQWLFVTSERYSAWIEKRHVGLGSAQQVFGYGAHGPYRVITGATATTVFTPEQPQVSRLQLDMGVRVPVIADWKPTAPVNGQLPYTGWVIQLPIRNDDGSLRLVPALLPRTADTSADYLPLTPRNLITQGFKFLGERYGWGHAYDARDCSGFTSEIYRSFGMLLPRNTSQQAVSPALDRIAFNQGDPDAKRTRAVRQLAVGDMVYIPGHVMVVLGHVGALTYVIHDTAGGSWLGPDGARVAARLNGVSVTPLEPMLASDTASYIDRITNIQRVRPRPATAKQAE
>NC_016147.2|WP_014161941.1|3198067_3200977_-|TonB-dependent-receptor
MSVEVSCLPRCSTLTLALLAWLCTPLVALAQATSEPVTEASQATTQELDKVSVTGSRIKRTDIETALPITVIGKAEIDAQGISSAEQLMSYLNVSGNGSDNLASNVGIVTGVDQRGNNGVSGANLRGQGADATLVLLNGRRVAAHGLKGRVVDLNSIPFAAIERVEVLRDGASAIYGTDAIGGVINFITRSDYRGLTLSAFTDTTEEGGGNIHRGNLLVGGGDLDTDGWNAFASFSYKKSEILRGNDRDFSNAFQPERGLSPDTRGTPYATVANRPASTPTLIGNGLIDPADRSTQQYINPLDLPGAAGCESGSGNGLMGPYDHVLWGVASARYACAYDYPAAAVMQQPVESKDIIGRATFRISDRHRMFVEFTGSEVDVEKTFEPYQISPGTVFNASTFYPRTGAAYDEVYDALAAYFGAGQLNYGAPIAYRWRCTACGQRQIATNTKSYRILLGFEGQIGSWDYNAGISRASSKSTSTLGGGYYDTAKLRQVLGSGLLNPFLLPGQAQTPEAMAALADASADGTDLYGGESIMTSIDASVSGGLGFSLPGGEVQLATGIDLRREEYDFGGNQPGEGDPDDPFDGIYLAPFDNGNILRNVSRDTKAVYAELYLPLLDTLELTLAERYDHYEGFGGTENPKVSFKYQPLDGLAFRGAYSTGFKVPTFNQLFYGEALSPYTGLDLADPATCPGGVASPTVPGCESIQPDLLTGGKQDLDPEESRQKSLGVVIAPVDWFNMSVDWWEIKREKTIRSGISIDTLVDNYDTFASNFIRDGNGNITAIDQRYINSGGSLMRGIETDINLTLDDVLGGDWRVHLNGSYLDTYRTKDLGTLPYTDNLVGEYVRYYSLPIRWKHTLGVSYLRGNWTQSLTQIYRGGYKDEEPVSVRNGTFIPSNWDPDVSSYTTYNYSVSYKGLDKLGITLGIKNLLDEDPPFTAHMNDYAAGAGWEPRVADPRGRAYTLALEYKFY
>NC_016147.2|WP_014161940.1|3196391_3197999_-|serine-hydrolase
MFPVRRKLFFWTARRLWPALCAALLALPAVAQTPAVSPAPQVFDVLFDQAMARYRLPGLAVAVVEDGRVVYLRTAGETRAGSGQRIDADTLFKIASNTKAMTTGVLARLVDQGKLQWDDPVTRYLPQFRMADPWVTENMQVRDLLIHNSGLGLGAGDLMLWPEPNDFTRADIIAGLAHLQPTHSFRAHYAYDNLMYVVAGEVAAAAGGKPYDQLVREQVFGPLGMTRCQVGAFDRDAVGNVAQPHMVQDGRNVVVREDPAQVPDNPSMSAGGIRCSVRDMARWVRMWLDDGNRQPWLSAQQRNALWTLHTPMPIGRQLREWDGTHLYGYGYGWRLSDVDGQWRVAHTGTLAGMYSSVTLLPDRHVGFVVLINGQGQAARTTLTEALTKHYTRGDTALDVDHYAALLEGDRAKATATSPDAVPDTSARTPVHADQARSWQGVYTDAWFGQVSLCPAGNQTEFRAAKSPRMHGKVMRVGQRLLVDWDDASVDAEPWLSFAGTGDAVTLTLAAIDPDADFSYDYRDLHFQRSGACPAQ
>NC_016147.2|WP_043291459.1|3195559_3196345_-|N-acetylmuramoyl-L-alanine-amidase
MTPCNQRPRRHLALLGALLCALVLGGCASLPDRNPLAQWERSPNQNKRGPVLVVIHYTDQDSVAQSLKTLKTANSKGPVSAHYLIGADGKRYQLVSDERRAWHAGAGYWGTIGDVNSASIGIELDNDGNSPFARAQIDSLILLLGDLCQRHHIPRTAIIGHEDLAPGRKVDPGPLFPWKQLADAGFGHWPRADAPPAPADFDPWLALAALGYPLADRGAAVQSFHHHFRGMEGKTLDAEDLRILHDLTLPLPPAAGEEDGM
>NC_016147.2|WP_014161938.1|3194843_3195563_-|M15-family-metallopeptidase
MSARARRIAWVLLALLALAPALAQAPVTISPATDAAQVDLVDVATLMPQVQRDIRYAGSDNFIGAPVDGYQAPKCLLLRPVARALAQVQADLRAQGLGLKLFDCYRPVRAVQAFVRWADDLSDQKMKAEFYPALDKARIIPDGYVAPVSGHSRGATVDLTLVRCTDGGCDALDMGTPFDFFDPRAHTDAADITAAQRENRSLLLQAMARRGFVNYPREWWHYTFQPEPTPRLAYDVPVR
>NC_016147.2|WP_014161937.1|3193515_3194760_-|DUF819-family-protein
MPDSSHALIQNDIVLFGLIAATLALVFWTASLKGFWQKFYGVVPPLLLCYFIPGIFNSIGLIDGTGSQLYNPIASRVLLPAALVLLTLTIDLKAVMGLGWKLLAMYFGASLSIMLGAFVAFWVMQQMHPQTTAGDTWGGMAALAGSWIGGGANMVAMKEVFEVDETTFGQFVVLDVGVGYVWMAVLIFLAGRAKAIDARAGADTAAIETLKQRLAAYNAQHARIPTQADFMLIIGLAFGVVGLAHAVSVPLAGWFAPLPWAHRISLDSPYVWVVLLATLAGLGLSFTRARQLDGAGASKIGTLLLYVLIASIGMQMDIGAVLARPWLFVLGIVWIAVHIVLLWGLGRLLKAPLFYFAMGSQSNIGGPASAPVVAAVFHPALAPIGALLGTLGYATGTVLAYLVGIGLRAMAGAG
>NC_016147.2|WP_014161936.1|3193112_3193439_+|Na+/H+-antiporter-subunit-G
MNAAIDLVLIALLVAGSIFILVGALGLVKLSDVFARLHAPTKSSTLGVGCVLLASVGYHLLQGEGLQLRELLITVFLFITAPISAHLIGKAALALLPGHQPAPPPGDD
>NC_016147.2|WP_043291457.1|3192855_3193116_+|K+/H+-antiporter-subunit-F
MTVTGALGVACLALLLCLWRLVFGPTVSDRILALDTLSVTAIAVLMLWGMQLDSTVYFEAALVIAMLGFGSTVVLSKFVLRRDIVE
>NC_016147.2|WP_014161945.1|3205081_3205933_+|MurR/RpiR-family-transcriptional-regulator
MPPLVRIRSERDHMSAIERRIADYILDNAHLLRDYSSQQLASALGISQSSVVKFSQKLGFKGYPDLKYSVGQAVARGGGPQPASNGPAPAPGDGYQQLQDALRRSKAAAEDETRLLNPRAHIEQIVARLDRAQKVFVCGLGDDGLFAREFAMRLSLLGMLTVHHADAILMMTNISAARPGDLMIVFSEFGKLPQLSQLSRTFQDAGGAVVSITRHTANPLRAHADAALVVSAHDPAPHIEQLLYRSSLQYLLDFLFVLLCQTNPDRERQLAVNLERVQRLLDS
>NC_016147.2|WP_193384103.1|3206065_3206755_+|L,D-transpeptidase-family-protein
MQQAQQLVVVTTSDWDDNQGRLQTYVREGKDWKPAAPAFAVAIGKNGSAWGEGLFPAQQAGPHKREGDGRSPAGIYRIGEAFGYAASVDTRLKYQQMQAGSWCVDVPDSPFYNQIVDEKQVGPRAVEGASEHMRLDLHNNGDVRYRQGLVIEHNPKAIPGRGSCIFAHLWRSPGEATAGCTAMAPASMEALLAWLDPSRQPLFVLLPRAEYIRLQHAWSLPLLTAGSQR
>NC_016147.2|WP_014161947.1|3206751_3208053_+|amino-acid-permease
MSAPAPEQGELVRAVSRWQIVGLSINDVIGSGIYLLPAATVALLGPLSLWAVLLAGVAVTLLVLCYAQAASYFDQPGGSYLYAREAFGRYAGFQVGWMIWLTRISSAAALGNGLADAVSRFWPAAGAGGWRLLVVVGSLALLTGINVIGVRSAARTGVVLVIAKLVPLLLFVVVGLFFMDWSLAFAGTAPDLGDLPNLGQAALLLLFAYAGFENIPAAAGEFRNPRRDVPFALITMIALVTLIYAAVQVVAMGTLPGLAQSATPLADAAARFGGEGLALVLTIGAVVSIFGTTSNTVMLGPRFLFALARDGFGPKFLARVHPRFRTPAAAILVQGVLSVALALSGSFEKLALLSMVTRLLAYIGTAAAVLVLAHRRRDNPNALRLPGGPLIPILALLLSLGLLGSASASNLLAVAAAALVGTVIYLFPRKAET
>NC_016147.2|WP_014161948.1|3208161_3208710_+|hypothetical-protein
MQPRKTALAHAALQTHRAGLDMRQRRVLIMADGQRSLGELSQLLGPETAQQVAALIRDGYLTADAEPTLHEALATPQAAPAAPPPAPAPAAPASHRRSLVAARLYLLGMLELQRDPAAQRLHQQLQRTTDEYPAVEVMLEALTLLPQLTSPGYAQRVQTRLSEVLPEEHLPALARIGLALED
>NC_016147.2|WP_014161949.1|3208713_3210012_-|homogentisate-1,2-dioxygenase
MDSNQYMTGFGNHFASEAIAGALPVGRNSPQQVALGLYAEQLSGTAFTAPRADNRRSWLYRIRPAAIHGPFAAFDGAARFHNVFGDGPVSPDQLRWSPLPLPQAPADFIEGLVAMAGNGSAESQHGVGIHLYAANRDMAGRWFYNADAELLIVPQLGRLRIATELGVLEVEPQQVAVIPRGIRLAVMLPDGQARGYLCENFGAPLRLPELGPIGANGLANPRDFQTPVAAYEDVEGDFELIAKFQGHLWRADIGHSPLDVVAWHGNCAPYRYDLRRFNTIGSISFDHPDPSIFTVLTSPSDTPGTANLDLVIFPPRWLVAQDTFRPPWFHRNVASEFMGLVHGAYDARAEGFAPGGASLHNGMSGHGPDAATFERASHADLSRPDVITDTMAFMFETRAVLRPTRQALQAPHRQRDYQQCWAGLKRNFQPPR
>NC_016147.2|WP_043290748.1|3210045_3210444_-|endonuclease-domain-containing-protein
MPDHIKPPLPARTLDHARTLRREMTDAERLLWNHLRGSRLEGLKFRRQHPVPPYIADFCCIELKLIIELDGSQHSQQADETRTKFLESQGWTVVRFWDNEVLLQVEAVVGAIWHCACGRTLTPTPLPVGEGL
>NC_016147.2|WP_052299827.1|3210553_3211663_-|4-hydroxyphenylpyruvate-dioxygenase
MSAQRSMQAPGTDVKDATFDNPMGIDGFEFVEFSAPAGQGDQLHDYLRRLGFTQVARHRTRAISTYRQNDCTLLINEDPDSFAADFAAQHGPGACGFAIRVNKLAEWVRVQALKNGAEQIGERELTKAVAAPVIKGIGGCMLYIVDRYDSAGTIHDPDYQFLDGVERMPKGFGLTFIDHLTHNLYPGNMAQWADYYARLFNFREIRYFDIKGAKTGLLSKAMTAPDGMVRIPLNESHDPKSQINEYLDTYRGEGIQHIACFTEDIYTTVEAMRAAGVEFLETPDTYFEVIEQRIPDHGEDLARLARNRILIDADAETGQRKLLQIFTQNAIGPIFFEIIQRKGNQGFGEGNFTALFESIERDQIKRGVL
>NC_016147.2|WP_043291464.1|3211741_3212281_+|winged-helix-turn-helix-transcriptional-regulator
MKQPDALPPAQPLTLQLETFIPYQLSVLSNRVSQAISAEYYRRFGLVMTEWRTMCVLGRFPGLSASEVAERTAMDKVAVSRAVARLLERELVSRDIHGDDRRRSVLALSAKGQAMHDQVAPLVLACEQRLLSVLDEDELAQLHALIGRLGGEGMNRLLSGLQGMPMSPVSSAQVNPPQA
>NC_016147.2|WP_083833575.1|3212301_3213936_-|peptide-MFS-transporter
MTGGQATSRSPPDVSAIQPSSAGEKTFLGHPRGLFVLFFAEMWERFSYYGMRALLIFYLVKHWLYSDGDASLIYGAYTALVYITPVIGGYLADRYLGQRKAVVFGAILLTIGHGLMAVEGEGGQGSAAINVFWLALSFIIVGTGFLKANISVIVGQLYARTDRRRDPAYTIFYMGINLGAALGALIAGWLGQTYGWSYGFGAAGVGMALGLVVFVLGKPLLLGRGEAPDPARLARPVAGVPFEWLLYAGSLVGIVVVWFLIQHQSLVGGILGAAGAALVLYVLFTAVFKLPPHDRDRILAAIYLILGSILFWALFEQAGSSLNLFTDRSVDRHIFGWEVPASMFQSINSIYIVAFGPVFAWLWTLLGKRGLEPSAPAKFGLGVIQLGAGFLVLVAGAAAAGAGQLTPVVFIFLIYLLHTTGELCLSPVGLSAMNRLSPANMASLIMGMWFFASATGNFAAGLIAAATGAEGADGADPREVVMGVYSTVGWTAIVVGVVMLVIAPLIGRLMHLETLRDDQVGLAGQGELAGPDAAGTGLRSETRG
>NC_016147.2|WP_043291465.1|3214192_3215062_-|tryptophan-2,3-dioxygenase
MQIQDNQRPLEAGIHTDLAGRTTYGGYLQLDRLLSAQQPLTVPAHHDEMLFIIQHQVSELWMKLMIHELCAALGHLQRDQVWQTRKVLARAKQVLRQLTEQWSVLETLTPSEYMGFRDVLGPSSGFQSLQYRQLEFMLGNKNAAMLKVFSHDPAGQQVLRGALEAPSLYEEFLRYLARFGHAVPAQHLQRDFSLAHVRDEALLPMFERIYGDTDRYWREYALCEDLVDLETQFQLWRFRHMRTVMRVIGFKRGTGGSSGVGFLKQALELEFFPELFQVRTVVGLEPPAG

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Crispr_ID: NC_016147_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016147_13

3282950-3283100

Orphan

Consensus_repeat	Method
ATGGCGGGTCGAGACCCGCCCTACGTGTGCAATGGCGGGTCGAGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016147_13

>merge|NC_016147|13|3282950-3283100|CRISPRCasFinder
ATGGCGGGTCGAGACCCGCCCTACGTGTGCAATGGCGGGTCGAGACCGCCTTCCATGACTTGACGGCTGCTGCAATGGCGGGTCGAGACCCGCCCTACGCTGCGATGGCGGGTCGAGACCCGCCCTACGTGTGCAATGGCGGGTCGAGACC

>NC_016147|13|13|3282950-3283100|CRISPRCasFinder
ATGGCGGGTCGAGACCCGCCCTACGTGTGCAATGGCGGGTCGAGACC	GCCTTCCATGACTTGACGGCTGCTGCAATGGCGGGTCGAGACCCGCCCTACGCTGCG
ATGGCGGGTCGAGACCCGCCCTACGTGTGCAATGGCGGGTCGAGACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016147.2\|WP_043290759.1\|3291953_3293003_+\|YeiH-family-putative-sulfate-export-transporter	unknown	unknown	gnl\|CDD\|225411
NC_016147.2\|WP_043290756.1\|3282171_3282864_+\|VIT-family-protein	unknown	unknown	gnl\|CDD\|153123
NC_016147.2\|WP_014162011.1\|3275013_3275943_+\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|188046
NC_016147.2\|WP_014162025.1\|3286507_3287248_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NC_016147.2\|WP_014162031.1\|3293091_3294240_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|224733
NC_016147.2\|WP_014162013.1\|3276614_3277169_-\|DUF924-family-protein	unknown	unknown	gnl\|CDD\|377592
NC_016147.2\|WP_052299845.1\|3274181_3274955_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NC_016147.2\|WP_014162016.1\|3278061_3278892_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|131868
NC_016147.2\|WP_043291475.1\|3287484_3289446_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|183236
NC_016147.2\|WP_014162023.1\|3284952_3285594_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NC_016147.2\|WP_014162022.1\|3283964_3284822_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NC_016147.2\|WP_014162015.1\|3277578_3277914_+\|hypothetical-protein	unknown	unknown	unknown
NC_016147.2\|WP_014162017.1\|3278977_3280087_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NC_016147.2\|WP_014162021.1\|3283104_3283740_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NC_016147.2\|WP_014162018.1\|3280143_3280419_-\|metal/formaldehyde-sensitive-transcriptional-repressor	unknown	unknown	gnl\|CDD\|197388
NC_016147.2\|WP_014162027.1\|3289541_3290777_+\|multifunctional-CCA-addition/repair-protein	unknown	unknown	gnl\|CDD\|182810
NC_016147.2\|WP_014162024.1\|3285681_3286467_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NC_016147.2\|WP_014162019.1\|3280537_3281902_-\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|178221
NC_016147.2\|WP_014162028.1\|3290967_3291855_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176112
NC_016147.2\|WP_158308249.1\|3273858_3274008_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_016147.2\|WP_043290759.1\|3291953_3293003_+\|YeiH-family-putative-sulfate-export-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	1.33152e-99
NC_016147.2\|WP_043290756.1\|3282171_3282864_+\|VIT-family-protein	gnl\|CDD\|153123	cd02432, Nodulin-21_like_1, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	1.40166e-90
NC_016147.2\|WP_014162011.1\|3275013_3275943_+\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|188046	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. [Energy metabolism, Electron transport].	4.05489e-54
NC_016147.2\|WP_014162025.1\|3286507_3287248_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	2.43897e-43
NC_016147.2\|WP_014162013.1\|3276614_3277169_-\|DUF924-family-protein	gnl\|CDD\|377592	pfam06041, DUF924, Bacterial protein of unknown function (DUF924). This family consists of several hypothetical bacterial proteins of unknown function. Structurally, this family resembles TPR-like repeats.	1.3101e-72
NC_016147.2\|WP_052299845.1\|3274181_3274955_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	2.49206e-58
NC_016147.2\|WP_014162023.1\|3284952_3285594_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	5.76714e-53
NC_016147.2\|WP_043291475.1\|3287484_3289446_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	1.614e-69
NC_016147.2\|WP_014162031.1\|3293091_3294240_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|224733	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism].	5.49156e-155
NC_016147.2\|WP_014162022.1\|3283964_3284822_+\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	3.14116e-21
NC_016147.2\|WP_014162016.1\|3278061_3278892_-\|S-formylglutathione-hydrolase	gnl\|CDD\|131868	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. [Cellular processes, Detoxification].	8.74554e-140
NC_016147.2\|WP_014162017.1\|3278977_3280087_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NC_016147.2\|WP_014162021.1\|3283104_3283740_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.2206e-99
NC_016147.2\|WP_014162018.1\|3280143_3280419_-\|metal/formaldehyde-sensitive-transcriptional-repressor	gnl\|CDD\|197388	cd10153, RcnR-FrmR-like_DUF156, Transcriptional regulators RcnR and FrmR, and related domains; this domain family was previously known as part of DUF156. This domain family includes various transcriptional regulators that respond to different stressors. It includes Escherichia coli RncR (formally known as YohL, nickel and cobalt-sensitive), and E. coli FrmR (formally known as YaiN, formaldehyde sensitive). Escherichia coli RncR represses expression of the gene encoding the nickel and cobalt-efflux protein RcnA; RcnA may act through modulating NikR, to repress the NIkABCDE nickel transporter. In vitro, purified RncR binds to the rncA promoter DNA fragment in the absence of Ni2+ or Co2+, and the affinity of RncR for this promoter is reduced in the presence of excess nickel. Escherichia coli FrmR regulates the formaldehyde degradation frmRAB operon. This family belongs to a larger superfamily that includes CsoRs (copper-sensitive operon repressors). CsoRs form homotetramers (dimer of dimers). In Mycobacterium tuberculosis CsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily. In this family, however, not all these residues are conserved; in E.coli RcnR and FrmR there is a His or a Thr instead of the second Cys (C-H-H or C-H-T) respectively. For E. coli FrmR, an N-terminal His residue, not conserved in all members of this family, is also involved in metal binding (H-C-H-H). A conserved Tyr and a Glu residue that facilitate allosteric regulation of DNA binding for CsoRs are poorly conserved in this family.	2.86437e-40
NC_016147.2\|WP_014162027.1\|3289541_3290777_+\|multifunctional-CCA-addition/repair-protein	gnl\|CDD\|182810	PRK10885, cca, multifunctional CCA addition/repair protein.	0
NC_016147.2\|WP_014162024.1\|3285681_3286467_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	1.50627e-52
NC_016147.2\|WP_014162019.1\|3280537_3281902_-\|glutamate--cysteine-ligase	gnl\|CDD\|178221	PLN02611, PLN02611, glutamate--cysteine ligase.	0
NC_016147.2\|WP_014162028.1\|3290967_3291855_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176112	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold. CysL, also known as YwfK, is a regular of sulfur metabolism in Bacillus subtilis. Sulfur is required for the synthesis of proteins and essential cofactors in all living organism. Sulfur can be assimilated either from inorganic sources (sulfate and thiosulfate), or from organic sources (sulfate esters, sulfamates, and sulfonates). CysL activates the transcription of the cysJI operon encoding sulfite reductase, which reduces sulfite to sulfide. Both cysL mutant and cysJI mutant are unable to grow using sulfate or sulfite as the sulfur source. Like other LysR-type regulators, CysL also negatively regulates its own transcription. In Escherichia coli, three LysR-type activators are involved in the regulation of sulfur metabolism: CysB, Cbl and MetR. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.67001e-58

>NC_016147.2|WP_043290756.1|3282171_3282864_+|VIT-family-protein
MRIRHPEIHRSDRTGWLRASVLGANDGIVSTAGLLVGVAASGVSAQALLATGVAGLVAGAISMAAGEYVSVSSQADTERADLTLEKRELAEDPHNELTELALIYERRGLTAALAHQVAEQLTAHDALGAHARDELGITDTFRARPVQAALASAGAFSVGALMPLLVAWAFAAQATVAVVAATLIALLVSGALAAWAGGAPMLRGALRVVFWGALAMAITHAVGLLFNVRV
>NC_016147.2|WP_014162019.1|3280537_3281902_-|glutamate--cysteine-ligase
MSSPSLTADTPITDLAQLVEYSAAGSRPRAQWRIGTEHEKFGFRTDDLRPPPFDGERGIEALLNGLTRFGWEAAPENGRTLALLRAGASVTLEPAGQLELSGAPLESIHQTCLEVGSHLDEVRQVADELQLGFLGMGFQPKWRRDQMPWMPKGRYRIMQAYMPKVGQLGLDMMTRTCTVQVNLDYGSESDMVKKFRVSLALQPVATALFADSPFTEGKPNGYLSYRSHIWTDTDPDRTGMLDFVFEDGFGFERYVHYLLDVPMYFSYRDGIYHDASGQSFRDFLKGRLPALPGALPTLRDWSDHMTTAFPEVRMKKFLEMRGADAGQRDRLCALPAFWVGLLYDDAALDAAWDLVKDFTRQERHALRDGVPRDALKLPFRGASVRELAVEAVKIAQAGLRRRAFLNADGADESAFLDVLAEIAESGKTPAERKLDLFHGRWKGQVDPVFAEFAY
>NC_016147.2|WP_014162018.1|3280143_3280419_-|metal/formaldehyde-sensitive-transcriptional-repressor
MPHSPEEKKRVLARVRRIQGQAEALARALEGGADCGPVLQQIAAIRGAVNGLMSEVMEAHIRETFGQPAGDEAQREARVAEMTGLVRSYLK
>NC_016147.2|WP_014162017.1|3278977_3280087_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MKSRAAVAFAPGKPLEIVEIDLAPPKAGEVLIRITHTGVCHTDAFTLSGEDPEGVFPAVLGHEGAGIVVEVGQGVTSVKPGDHVIPLYTAECGQCLFCKSGKTNLCVAVRATQGKGLMPDGTTRFSYNGEPVYHYMGCSTFSEYTVVAEVSLARINPQANHEQVCLLGCGVTTGIGAVHNTAKVQAGDSVAVFGLGGIGLAVIQGARQAKAGRIFAIDTNPSKFDLARQFGATDCINPADHDKPIQQVIVEMTTWGVDHTFECIGNVNVMRAALECAHRGWGQSVIIGVAGAGQEISTRPFQLVTGRRWLGSAFGGVKGRSQLPGMVEDAMKGEIELAPFVTHTMGLDQINEAFDLMHQGKSIRSVVHF
>NC_016147.2|WP_014162016.1|3278061_3278892_-|S-formylglutathione-hydrolase
MQRIEHRASFGGWQDVYRHSSQVLACEMTFAVYLPPQAATRRLPVLYWLSGLTCTEQNFITKAGAQRYAAEHGLILVAPDTSPRGAQVADAEGHDLGQGAGFYLNATQPPWAAHYRMYDYVLDELPALIEASFPATDARGLSGHSMGGHGALVIALRNPGRYRSVSAFSPIVAPTQVPWGQKAFAAYLGQDRAAWTAWDATELVKTATPSLPLLIDQGDGDEFLHSQLRPQLFEAAAAQAGYPIRLRMQPGYDHSYYFIASFIGEHLAHHARALNG
>NC_016147.2|WP_014162015.1|3277578_3277914_+|hypothetical-protein
MPRYYIALPDPDKARGPQAEYSFNASGAEGFAQQLQDALRTDWLFARWRDAQDEPDEVDPALGAVDPAAVVTGQVDDLHIDLVAQTSIPGEVLKHRLRLLAGSGWQLRDVR
>NC_016147.2|WP_014162013.1|3276614_3277169_-|DUF924-family-protein
MTIRPGRSVQQELLAFWRQAGPARWFARDDAFDARFGQHFLQDHCAAARGEYAHWLDTADDALALLLLLDQFPRNCFRDSGHAFATDGLALACAKRALERAHDQATEPLLRPFFYLPFEHAEDLTEQARSLALFQALGDAQALEYAVAHHQAIARFGRFPHRNAALGRTSTPDEQAWLDAGGGF
>NC_016147.2|WP_014162011.1|3275013_3275943_+|Grx4-family-monothiol-glutaredoxin
MSLDPALRSRIDSLLQSNRVVLFMKGQPSMPQCGFSAKAVGALSSLGVDYAHVNVLADQELREGIKAYGDWPTIPQLYIDGELVGGSDIIEQLASSGELAAVLGVAAPDRTPPSITVTPAAAEMLLDSLEDAGPGAALILAIDAQYQPDFQLGPFDSKAIAAESNGVRVQFDPASARRAEGITIDWVDDIRGRGLAIDNPNAPRPVNQMPVTEAAARVASGELLLVDVRPAEERALASVNVPFRTFDGSGRAVLEALPKDTQLAFLCHAGGRSQQAAEQFRALGFGNVHNVVGGIDAWSTQVDPNVPRY
>NC_016147.2|WP_052299845.1|3274181_3274955_-|polysaccharide-deacetylase-family-protein
MRGHAMQHHVPRRPLLRLGLLALSQVGVLALWWLAGFKPGLAALAASHGAVLWSTFNPRSQLLCPALVRLPGDAPQVWLTIDDGPSEDTMPILELLDAHGARATFFLVGERARARPALVREIVRRGHGIGNHSDSHPQTAFWRLGPGALEAEIAASQRTLEELSGTAPRWFRSVVGHTNPFIAPVLARHGLTRVAWSARGFDGVRCTPDQVLARIEPGLKPGAIVLLHEGAAHGHNVQILRRLLEAMERRGLKSGFS
>NC_016147.2|WP_158308249.1|3273858_3274008_-|hypothetical-protein
MAGMRTNDPLCASTGQLSDEDLALLLKELQSRRLIVVQDGKIAYALPPA
>NC_016147.2|WP_014162021.1|3283104_3283740_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MAVSNYLNAAHYLLSAHNTGQLPVDEGFEVAFAGRSNAGKSSALNALAGHNALARVSKTPGRTQQLVFFEVKPQRCLVDLPGYGYAKVPMDLQAHWQAFIDQYFASRQALRGLVVVMDIRHPLKDYDRQMLGYAVQRGLPAHALLTKADKLGRGQQLQTLAAVKKELHAAYGDSVGVQVFSAESRLGVDQAREVVQQWLGLLPTDPAETMM
>NC_016147.2|WP_014162022.1|3283964_3284822_+|c-type-cytochrome
MRHARVLGLSSLAILAVGALAYAQTSVTALPDAAPVQAQPLEIDLTKTQWGDPTAGQAKAAACAACHGADGNSTAPIYPRLAGQSERYIARQLALFATGQRTTGMAAVMVPFAQSLNPQDMRDVGAYFATQKAGAGVADDSLIADGPYKGMKFYEPGQQIFRGGDAERGIPACMSCHGPSGAGNPGPPYPHIGGQPQEYVARRLQEYQAGTTTYTDPAHFQIMAQVAKPLTEQEIHSLASYIQGLHDSRADAAAAKAGPAPAPASAPTTPAAAAPAAAAEPTPQS
>NC_016147.2|WP_014162023.1|3284952_3285594_+|thiol:disulfide-interchange-protein-DsbA/DsbL
MKPRLLLFVLLALLPLAACASPANPVEGQDYEVIPNGQPFAPLTGGNKVEVVEVFGYVCIHCARFEPQFAAWQKRQPATVRVTPVPAAFGGYWIPYAKAYYAALSMGVLRQSHAAVFKALHDTHQLPIQNASSQEIAAFYARFGADPDKFAATMDAPQVAAELDKARAFGMATGITGTPTLVVNGKYRIKLADPDGMLKVADFLVQRELAATR
>NC_016147.2|WP_014162024.1|3285681_3286467_+|thiol:disulfide-interchange-protein-DsbA/DsbL
MKIRFVLALLALLSVLAACSKPEAAAPVASTPSANAPAATEAATGAPAASAPAQAAAEAPNTNAPVAPEGPAPVEGTDYTVIADGQPFEPADGKIEVVEAFSYICPACAQFEPLFNQWKARQPADVRVVYVPAQFRPDFREYAKVYYAAQALNIDRQSHDAVFKAIHQDRTLPGEGEPFDAAKVAQFYTQYGVSAEQFLQTMGSFAVAARLSKANQFLVRAQIGGTPSLIVAGKYLVKGRTMADMLRITDHLIAQERQATR
>NC_016147.2|WP_014162025.1|3286507_3287248_+|endonuclease/exonuclease/phosphatase-family-protein
MLSANIQAGSSTRRYSDYFTRSWSHALPVGAKRTSLDAIAELAGGHDIVGLQEADPGSLRSGFTNQTQYVARRAGFAYWSHQPNRNVARVAGSANGLLSKLEPVKVAMHPLPGRIAGRGVLLAHFGQGDDGLVVAVAHLSLGNGSRRMQLGFIAELLAAHRHSVLMGDFNCVPDVPEMDLLYSRTHLRPPGFCVPTFPSWRPQRAIDHILVTDHLVPTNARALPAAFSDHLALALEIDVPAEALRQ
>NC_016147.2|WP_043291475.1|3287484_3289446_+|transglycosylase-SLT-domain-containing-protein
MIRPALLSVLIALCAAAALAGAQDLDAQRPLVRSALEAAERGQAPPSQDPTLAHHPLRGWIEFAQLKRDIDRVGNAQAQEFLQRNAGQAVAAAFRSVWLPALARRKDWDALLANWQPTDNIGLRCARLQAQWVQGKADAAWTRQAQELWRAAARPLPDGCDPVFAALTAQGQLDDALRWERIDAAAAAGQSAVMRAAANGLSSGERAQAVAYAGFLDAPAAQGLGWEKSDRSRRIASNGLALLARKDPDAAERLLPQYAQTLGLSAEQQAQVRYQIALWTVASYLPDSARRLAAVPASAYDPRLHEWQVREALARGDWPAALKAIQAMDPAQRSQVRWKWFQARMLDKAGQPDQARRLYAEAARTATFHGFLAADRLGQPYALCPREPQDSAQARAAVARDPALIRAMELWKLDRAAWATAEWNDALTRFNDDQRRIAVEVAHDNGWFDRAVFALGRTPEELQLYRLRFPLQHQGAIRRQASNNAIDPAWLAAQIRAESVFNPNARSPANAMGLMQVLPGTGAEVARRNGIAYGGAQSLYDPQTNIAIGSAYLRELLDTYGTPYVTIAAYNAGPVPTARWQSQRPGLEPDVWIETISYKETRDYVARVLAFSVIYDWRLNDDALSLTDRIHGRLDGQRKRLACAEQPGTRNEE
>NC_016147.2|WP_014162027.1|3289541_3290777_+|multifunctional-CCA-addition/repair-protein
MKTYLVGGAVRDALLGLPPGDRDWVVVGATQADMEARGFRAVGRDFPVFLHPHTQEEYALARTERKSGRGYRGFVVDADRSVTLEQDLQRRDFTINAIAQTEDGMLVDPYGGARDIQARVLRHVGPAFCEDPLRVLRAARFMARLAPLGFTVAPQTLVLMRQMAASGELSALVPERVWQELRRALAAAQPSAFLRTLHDTGALAQVLPEVDALYGVPQRAQFHPEIDTGVHQELVCDMAARLAPGDDLIGFAALTHDLGKALTPAELLPRHLGHEQAGLRPLQDLCQRLKVPAEHRELAMMACREHLNVHRLAELRDATVHDLLARCDGFRKPARIAQLALVCECDMRGRAGSAEDDYPQGRELVRLHAAACAVSARDLAQQGLSGPQIGQAVRSARITAIAQARAANNRA
>NC_016147.2|WP_014162028.1|3290967_3291855_-|LysR-family-transcriptional-regulator
MNLHLLRVFAAVVEHAGFSRAAQALFVSQSAVSKAVRELESQLDLPLIDRSAGRGVHLTGAGQALYQHARGIFALERAALEDVRERVGLRRGGLRIGASTTVAAYWLAEVFARHAARYPQLDSALVVGNTGEIADALVDCRIDAGFVEGPAHDERIVATRWREEPLQAVVSASSSLGAQRRASARQLSAQRWLVREPGSGTREVARDLLQARGIEPAQTLEIGSNEAIARAVAAGVGVAILPAAVVADLIAVGKLRTLRLPDGPPLQRPLYRLELANRPRSPALEAFLAQLAGSG
>NC_016147.2|WP_043290759.1|3291953_3293003_+|YeiH-family-putative-sulfate-export-transporter
MADAATLSRPAMIRRPGFWPGLILVLAIALAGIGLSNIPWAKTTGLSALTLAIVLGIALGNTAFPAIAPRTGTGVDYAKDMLLRAGIVLYGLRVTFQDVMGVGLAGVVIDVIVVAGVFCAATWIGTRVLKLDRDTSMLIGAGSAICGAAAVLAAEPVIRAPAHKVSVAIATVVVFGTLGMFLYPWMYPSLGLDAHAYGVYAGSTIHEVAQVVVAGRAVSAQAAAAAVIEKMLRVMLLAPFLLMLGAWLRRGSNGAQSEAAPLTIPWFAILFVVVAGFNSLHLLPKPVVDATLMLDTLLLAMAMAALGLRTHWGSIKQAGAKPLLLAWILWVLLLGGGYLLNRAALALLA
>NC_016147.2|WP_014162031.1|3293091_3294240_-|N-acetylglucosamine-6-phosphate-deacetylase
MSRFALVNARVLAEAGIVDGGALVIEDGRIIALTDAAGARARTDDLRDLGGAWLAPGFIDLQVNGGGGVLFNNTPTAAGIAAIGRAHRRFGTTAFLPTLISDGADTMRRAIAATGQAIANGVDGVLGIHLEGPYLAPARKGTHDARQFRAPDEDEMAMATALDNGITLMTVAPERLGPERIAALVARGALVFAGHTAGSYEQIRAGLDAGLRGFTHLFNAMSPLQGRSPGAVGAALEDEASWCGVIVDGVHVHPGALRVALAAKRPGKLLLVTDAMPMVGADSPSFELYGETITAVDGVVRNAAGALAGSALDMASAVRNSVRLLGLPLQEAVRMAALYPAQCLGLAHERGRIAPGLRADLVALDDRLQVIETWIGGRSATG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_016147_2	2.1\|337844\|26\|NC_016147\|CRISPRCasFinder	337844-337869	26	NC_016147.2	364591-364616	2	0.923
NC_016147_7	7.1\|1699961\|22\|NC_016147\|CRT	1699961-1699982	22	NC_016147.2	191424-191445	2	0.909
NC_016147_7	7.3\|1700052\|22\|NC_016147\|CRT	1700052-1700073	22	NC_016147.2	191424-191445	2	0.909
NC_016147_8	8.2\|1917874\|22\|NC_016147\|CRISPRCasFinder	1917874-1917895	22	NC_016147.2	1084080-1084101	2	0.909

1. spacer 2.1|337844|26|NC_016147|CRISPRCasFinder matches to position: 364591-364616, mismatch: 2, identity: 0.923

gcctgcgcgtggagaaggcttggaca	CRISPR spacer
gcctgcgcgtggagaaggcgcggaca	Protospacer
******************* .*****

2. spacer 7.1|1699961|22|NC_016147|CRT matches to position: 191424-191445, mismatch: 2, identity: 0.909

taccggttcatccggcatggca	CRISPR spacer
taccggttcgtcgggcatggca	Protospacer
*********.** *********

3. spacer 7.3|1700052|22|NC_016147|CRT matches to position: 191424-191445, mismatch: 2, identity: 0.909

taccggttcatccggcatggca	CRISPR spacer
taccggttcgtcgggcatggca	Protospacer
*********.** *********

4. spacer 8.2|1917874|22|NC_016147|CRISPRCasFinder matches to position: 1084080-1084101, mismatch: 2, identity: 0.909

gctgccgacaccgctgccagcg	CRISPR spacer
gccgccgacaccgccgccagcg	Protospacer
**.***********.*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016147_8	8.1\|1917826\|25\|NC_016147\|CRISPRCasFinder	1917826-1917850	25	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	19084-19108	2	0.92
NC_016147_7	7.2\|1700005\|25\|NC_016147\|CRT	1700005-1700029	25	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	711459-711483	3	0.88
NC_016147_7	7.2\|1700005\|25\|NC_016147\|CRT	1700005-1700029	25	NC_008271	Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence	248082-248106	4	0.84
NC_016147_7	7.2\|1700005\|25\|NC_016147\|CRT	1700005-1700029	25	NZ_KY000050	Agrobacterium tumefaciens strain CFBP4442 plasmid pTi_CFBP4442, complete sequence	17156-17180	4	0.84
NC_016147_8	8.1\|1917826\|25\|NC_016147\|CRISPRCasFinder	1917826-1917850	25	NZ_CP053911	Hymenobacter sp. BRD128 plasmid unnamed3, complete sequence	9465-9489	4	0.84
NC_016147_8	8.1\|1917826\|25\|NC_016147\|CRISPRCasFinder	1917826-1917850	25	NZ_CP016500	Agrobacterium sp. RAC06 plasmid pBSY240_1, complete sequence	162796-162820	5	0.8
NC_016147_8	8.1\|1917826\|25\|NC_016147\|CRISPRCasFinder	1917826-1917850	25	NZ_CP045856	Agrobacterium sp. MA01 plasmid punanmed2, complete sequence	237918-237942	5	0.8
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	444068-444101	5	0.853
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	444068-444101	5	0.853
NC_016147_11	11.8\|3119795\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3119795-3119828	34	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	283995-284028	6	0.824
NC_016147_11	11.21\|3120650\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120650-3120683	34	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1118623-1118656	6	0.824
NC_016147_11	11.21\|3120650\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120650-3120683	34	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	720353-720386	6	0.824
NC_016147_11	11.21\|3120650\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120650-3120683	34	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	377609-377642	6	0.824
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	165951-165984	6	0.824
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	165951-165984	6	0.824
NC_016147_11	11.2\|3119399\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3119399-3119432	34	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	983150-983183	7	0.794
NC_016147_11	11.21\|3120650\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120650-3120683	34	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1373609-1373642	7	0.794
NC_016147_11	11.21\|3120650\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120650-3120683	34	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	439646-439679	7	0.794
NC_016147_11	11.38\|3121767\|34\|NC_016147\|PILER-CR	3121767-3121800	34	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	172862-172895	7	0.794
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1741590-1741623	7	0.794
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	390771-390804	7	0.794
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	545795-545828	7	0.794
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NC_007765	Rhizobium etli CFN 42 plasmid p42e, complete sequence	496697-496730	7	0.794
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_CP020909	Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence	496499-496532	7	0.794
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NC_021908	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence	503417-503450	7	0.794
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_CP020372	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence	68945-68978	7	0.794
NC_016147_11	11.41\|3121962\|34\|NC_016147\|PILER-CR	3121962-3121995	34	NC_008712	Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence	160717-160750	7	0.794
NC_016147_11	11.56\|3121764\|34\|NC_016147\|CRISPRCasFinder,CRT	3121764-3121797	34	NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	172862-172895	7	0.794
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1741590-1741623	7	0.794
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	390771-390804	7	0.794
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	545795-545828	7	0.794
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NC_007765	Rhizobium etli CFN 42 plasmid p42e, complete sequence	496697-496730	7	0.794
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_CP020909	Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence	496499-496532	7	0.794
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NC_021908	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence	503417-503450	7	0.794
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_CP020372	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence	68945-68978	7	0.794
NC_016147_11	11.59\|3121959\|34\|NC_016147\|CRISPRCasFinder,CRT	3121959-3121992	34	NC_008712	Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence	160717-160750	7	0.794
NC_016147_11	11.31\|3121305\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3121305-3121338	34	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1248273-1248306	8	0.765
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	927151-927184	8	0.765
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	881540-881573	8	0.765
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	652062-652095	8	0.765
NC_016147_11	11.41\|3121962\|34\|NC_016147\|PILER-CR	3121962-3121995	34	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	364184-364217	8	0.765
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	927151-927184	8	0.765
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	881540-881573	8	0.765
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	652062-652095	8	0.765
NC_016147_11	11.59\|3121959\|34\|NC_016147\|CRISPRCasFinder,CRT	3121959-3121992	34	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	364184-364217	8	0.765
NC_016147_11	11.8\|3119795\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3119795-3119828	34	CP021131	Meiothermus taiwanensis strain WR-220 plasmid pMtWR-220, complete sequence	5725-5758	9	0.735
NC_016147_11	11.20\|3120585\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120585-3120618	34	NZ_AP017899	Sphingopyxis sp. FD7 plasmid pSFD01, complete sequence	158210-158243	9	0.735
NC_016147_11	11.20\|3120585\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120585-3120618	34	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1670822-1670855	9	0.735
NC_016147_11	11.20\|3120585\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120585-3120618	34	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1675490-1675523	9	0.735
NC_016147_11	11.20\|3120585\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120585-3120618	34	NZ_CP032520	Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence	512184-512217	9	0.735
NC_016147_11	11.20\|3120585\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120585-3120618	34	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	341109-341142	9	0.735
NC_016147_11	11.21\|3120650\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120650-3120683	34	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	23293-23326	9	0.735
NC_016147_11	11.21\|3120650\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120650-3120683	34	NZ_CP017242	Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence	366698-366731	9	0.735
NC_016147_11	11.26\|3120977\|33\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120977-3121009	33	NC_042091	Pseudomonas phage nickie, complete genome	94072-94104	9	0.727
NC_016147_11	11.31\|3121305\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3121305-3121338	34	NZ_CP027024	Streptomyces sp. WAC00288 plasmid p2, complete sequence	71127-71160	9	0.735
NC_016147_11	11.31\|3121305\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3121305-3121338	34	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	640195-640228	9	0.735
NC_016147_11	11.31\|3121305\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3121305-3121338	34	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	646804-646837	9	0.735
NC_016147_11	11.31\|3121305\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3121305-3121338	34	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	233728-233761	9	0.735
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	214741-214774	9	0.735
NC_016147_11	11.41\|3121962\|34\|NC_016147\|PILER-CR	3121962-3121995	34	NZ_CP054602	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed3, complete sequence	102967-103000	9	0.735
NC_016147_11	11.41\|3121962\|34\|NC_016147\|PILER-CR	3121962-3121995	34	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	200137-200170	9	0.735
NC_016147_11	11.45\|3122224\|34\|NC_016147\|PILER-CR	3122224-3122257	34	NC_001396	Xanthomonas phage Cf1c, complete genome	2989-3022	9	0.735
NC_016147_11	11.45\|3122224\|34\|NC_016147\|PILER-CR	3122224-3122257	34	AB910602	Xanthomonas phage XacF1 DNA, complete genome	4296-4329	9	0.735
NC_016147_11	11.45\|3122224\|34\|NC_016147\|PILER-CR	3122224-3122257	34	M57538	Xanthomonas phage Cf1c unknown gene	2989-3022	9	0.735
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	214741-214774	9	0.735
NC_016147_11	11.59\|3121959\|34\|NC_016147\|CRISPRCasFinder,CRT	3121959-3121992	34	NZ_CP054602	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed3, complete sequence	102967-103000	9	0.735
NC_016147_11	11.59\|3121959\|34\|NC_016147\|CRISPRCasFinder,CRT	3121959-3121992	34	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	200137-200170	9	0.735
NC_016147_11	11.63\|3122221\|34\|NC_016147\|CRISPRCasFinder,CRT	3122221-3122254	34	NC_001396	Xanthomonas phage Cf1c, complete genome	2989-3022	9	0.735
NC_016147_11	11.63\|3122221\|34\|NC_016147\|CRISPRCasFinder,CRT	3122221-3122254	34	AB910602	Xanthomonas phage XacF1 DNA, complete genome	4296-4329	9	0.735
NC_016147_11	11.63\|3122221\|34\|NC_016147\|CRISPRCasFinder,CRT	3122221-3122254	34	M57538	Xanthomonas phage Cf1c unknown gene	2989-3022	9	0.735
NC_016147_11	11.69\|3122617\|34\|NC_016147\|CRISPRCasFinder,CRT	3122617-3122650	34	NZ_CP043507	Acetobacter sp. KACC 21233 plasmid unnamed1, complete sequence	108496-108529	9	0.735
NC_016147_11	11.8\|3119795\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3119795-3119828	34	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	661680-661713	10	0.706
NC_016147_11	11.8\|3119795\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3119795-3119828	34	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	318573-318606	10	0.706
NC_016147_11	11.8\|3119795\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3119795-3119828	34	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	585800-585833	10	0.706
NC_016147_11	11.8\|3119795\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3119795-3119828	34	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	579149-579182	10	0.706
NC_016147_11	11.8\|3119795\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3119795-3119828	34	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	599740-599773	10	0.706
NC_016147_11	11.8\|3119795\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3119795-3119828	34	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	593572-593605	10	0.706
NC_016147_11	11.8\|3119795\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3119795-3119828	34	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	579149-579182	10	0.706
NC_016147_11	11.8\|3119795\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3119795-3119828	34	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	860629-860662	10	0.706
NC_016147_11	11.20\|3120585\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120585-3120618	34	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	349854-349887	10	0.706
NC_016147_11	11.21\|3120650\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120650-3120683	34	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1903136-1903169	10	0.706
NC_016147_11	11.25\|3120910\|36\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120910-3120945	36	NZ_CP054604	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed5, complete sequence	136774-136809	10	0.722
NC_016147_11	11.25\|3120910\|36\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120910-3120945	36	NZ_CP025809	Sulfitobacter sp. SK025 plasmid unnamed1, complete sequence	206886-206921	10	0.722
NC_016147_11	11.25\|3120910\|36\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120910-3120945	36	MN694285	Marine virus AFVG_250M134, complete genome	29607-29642	10	0.722
NC_016147_11	11.26\|3120977\|33\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120977-3121009	33	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	56123-56155	10	0.697
NC_016147_11	11.31\|3121305\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3121305-3121338	34	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	55379-55412	10	0.706
NC_016147_11	11.34\|3121505\|33\|NC_016147\|PILER-CR	3121505-3121537	33	NZ_CP042998	Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence	79694-79726	10	0.697
NC_016147_11	11.38\|3121767\|34\|NC_016147\|PILER-CR	3121767-3121800	34	NZ_CP038638	Cupriavidus oxalaticus strain X32 plasmid unnamed3, complete sequence	27808-27841	10	0.706
NC_016147_11	11.38\|3121767\|34\|NC_016147\|PILER-CR	3121767-3121800	34	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	1082005-1082038	10	0.706
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	686695-686728	10	0.706
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NC_023282	Streptomyces sp. FR1 plasmid pFRL2, complete sequence	44836-44869	10	0.706
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1126374-1126407	10	0.706
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NZ_LR134450	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence	67325-67358	10	0.706
NC_016147_11	11.49\|3122488\|34\|NC_016147\|PILER-CR	3122488-3122521	34	NC_020879	Aeromonas phage Aes012, complete genome	143900-143933	10	0.706
NC_016147_11	11.49\|3122488\|34\|NC_016147\|PILER-CR	3122488-3122521	34	NC_020879	Aeromonas phage Aes012, complete genome	144311-144344	10	0.706
NC_016147_11	11.52\|3121502\|33\|NC_016147\|CRISPRCasFinder,CRT	3121502-3121534	33	NZ_CP042998	Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence	79694-79726	10	0.697
NC_016147_11	11.56\|3121764\|34\|NC_016147\|CRISPRCasFinder,CRT	3121764-3121797	34	NZ_CP038638	Cupriavidus oxalaticus strain X32 plasmid unnamed3, complete sequence	27808-27841	10	0.706
NC_016147_11	11.56\|3121764\|34\|NC_016147\|CRISPRCasFinder,CRT	3121764-3121797	34	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	1082005-1082038	10	0.706
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	686695-686728	10	0.706
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NC_023282	Streptomyces sp. FR1 plasmid pFRL2, complete sequence	44836-44869	10	0.706
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1126374-1126407	10	0.706
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NZ_LR134450	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence	67325-67358	10	0.706
NC_016147_11	11.67\|3122485\|34\|NC_016147\|CRISPRCasFinder,CRT	3122485-3122518	34	NC_020879	Aeromonas phage Aes012, complete genome	143900-143933	10	0.706
NC_016147_11	11.67\|3122485\|34\|NC_016147\|CRISPRCasFinder,CRT	3122485-3122518	34	NC_020879	Aeromonas phage Aes012, complete genome	144311-144344	10	0.706
NC_016147_11	11.12\|3120058\|35\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120058-3120092	35	NC_015314	Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence	127503-127537	11	0.686
NC_016147_11	11.12\|3120058\|35\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120058-3120092	35	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	120353-120387	11	0.686
NC_016147_11	11.12\|3120058\|35\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120058-3120092	35	NZ_CP034817	Paracoccus sp. Arc7-R13 plasmid unnamed7, complete sequence	3771-3805	11	0.686
NC_016147_11	11.12\|3120058\|35\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120058-3120092	35	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	201652-201686	11	0.686
NC_016147_11	11.12\|3120058\|35\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120058-3120092	35	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	119686-119720	11	0.686
NC_016147_11	11.20\|3120585\|34\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120585-3120618	34	NC_009956	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence	44846-44879	11	0.676
NC_016147_11	11.51\|3121436\|35\|NC_016147\|CRISPRCasFinder,CRT	3121436-3121470	35	NZ_CP041045	Paracoccus sp. AK26 plasmid pAK1, complete sequence	344647-344681	11	0.686
NC_016147_11	11.12\|3120058\|35\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120058-3120092	35	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	915425-915459	12	0.657
NC_016147_11	11.12\|3120058\|35\|NC_016147\|PILER-CR,CRISPRCasFinder,CRT	3120058-3120092	35	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	738469-738503	12	0.657
NC_016147_11	11.40\|3121897\|34\|NC_016147\|PILER-CR	3121897-3121930	34	NC_005073	Rhodococcus erythropolis linear plasmid pBD2, complete sequence	188829-188862	12	0.647
NC_016147_11	11.58\|3121894\|34\|NC_016147\|CRISPRCasFinder,CRT	3121894-3121927	34	NC_005073	Rhodococcus erythropolis linear plasmid pBD2, complete sequence	188829-188862	12	0.647

1. spacer 8.1|1917826|25|NC_016147|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 2, identity: 0.92

accccgaccgccgactcggcccagg-	CRISPR spacer
accccgaccgccgactc-gcccagac	Protospacer
***************** ******.

2. spacer 7.2|1700005|25|NC_016147|CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 3, identity: 0.88

cgcagggccggatcccggattccgg	CRISPR spacer
tgcagggctggatcccggattccga	Protospacer
.*******.***************.

3. spacer 7.2|1700005|25|NC_016147|CRT matches to NC_008271 (Rhodococcus jostii RHA1 plasmid pRHL3, complete sequence) position: , mismatch: 4, identity: 0.84

cgcagggccggatcccggattccgg	CRISPR spacer
agcagggccggatcccgcatgccga	Protospacer
 **************** ** ***.

4. spacer 7.2|1700005|25|NC_016147|CRT matches to NZ_KY000050 (Agrobacterium tumefaciens strain CFBP4442 plasmid pTi_CFBP4442, complete sequence) position: , mismatch: 4, identity: 0.84

cgcagggccggatcccggattccgg	CRISPR spacer
ccaagggccggatcccggatgccga	Protospacer
*  ***************** ***.

5. spacer 8.1|1917826|25|NC_016147|CRISPRCasFinder matches to NZ_CP053911 (Hymenobacter sp. BRD128 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

accccgaccgccgactcggcccagg	CRISPR spacer
accccgcccgccgacacggcccaac	Protospacer
****** ******** *******.

6. spacer 8.1|1917826|25|NC_016147|CRISPRCasFinder matches to NZ_CP016500 (Agrobacterium sp. RAC06 plasmid pBSY240_1, complete sequence) position: , mismatch: 5, identity: 0.8

accccgaccgccgactcggcccagg	CRISPR spacer
ccggcgaccgccgactcggcccaac	Protospacer
 *  *******************.

7. spacer 8.1|1917826|25|NC_016147|CRISPRCasFinder matches to NZ_CP045856 (Agrobacterium sp. MA01 plasmid punanmed2, complete sequence) position: , mismatch: 5, identity: 0.8

accccgaccgccgactcggcccagg	CRISPR spacer
ccggcgaccgccgactcggcccaac	Protospacer
 *  *******************.

8. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.853

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
atcgccggcggccacgcgctgctgatcggtgccg	Protospacer
*.**************.************  **.

9. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.853

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
atcgccggcggccacgcgctgctgatcggtgccg	Protospacer
*.**************.************  **.

10. spacer 11.8|3119795|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 6, identity: 0.824

ccgca-tgcggcccggctgacggccaagggcgcgg	CRISPR spacer
-agcaccgcggcccggcagacggccgagggcgcgt	Protospacer
  *** .********** *******.********

11. spacer 11.21|3120650|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 6, identity: 0.824

tcgccgatctgggtcgatggccagcggcatccgc-	CRISPR spacer
tcgccgatctgggacgacggccagc-gcaccggta	Protospacer
************* ***.******* ***.* *.

12. spacer 11.21|3120650|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 6, identity: 0.824

tcgccgatctgggtcgatggccagcggcatccgc-	CRISPR spacer
tcgccgatctgggacgacggccagc-gcaccggta	Protospacer
************* ***.******* ***.* *.

13. spacer 11.21|3120650|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 6, identity: 0.824

tcgccgatctgggtcgatggccagcggcatccgc-	CRISPR spacer
tcgccgatctgggacgacggccagc-gcaccggta	Protospacer
************* ***.******* ***.* *.

14. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 6, identity: 0.824

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
accgccggcggccacgtggtgctgctcaattccg	Protospacer
****************** ***** **.. ***.

15. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 6, identity: 0.824

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
accgccggcggccacgtggtgctgctcaattccg	Protospacer
****************** ***** **.. ***.

16. spacer 11.2|3119399|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggtggccggcccggcgagatcggccgcg	CRISPR spacer
gcggtcggtgaccggcccggagagatcggccgaa	Protospacer
.* *.*****.********* *********** .

17. spacer 11.21|3120650|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.794

----tcgccgatctgggtcgatggccagcggcatccgc	CRISPR spacer
gtagtcggcg----gggccgatggccagcggcatgcgc	Protospacer
    *** **    ***.**************** ***

18. spacer 11.21|3120650|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.794

----tcgccgatctgggtcgatggccagcggcatccgc	CRISPR spacer
gtagtcggcg----gggccgatggccagcggcatgcgc	Protospacer
    *** **    ***.**************** ***

19. spacer 11.38|3121767|34|NC_016147|PILER-CR matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.794

aggtgcggt--ttgaggtcgacggcgacggcaacgt	CRISPR spacer
--atgcggccattgtggtcgacggcgacggcaccga	Protospacer
  .*****.  *** ***************** **

20. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctcgccggcggccacgtgctgctgatcggcgtgc	Protospacer
 .***************************  .

21. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctcgccggcggccacgtgctgctgatcggcgtgc	Protospacer
 .***************************  .

22. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctggccggcggccacgtgctgctgatcggtgtcc	Protospacer
 . **************************  .*

23. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NC_007765 (Rhizobium etli CFN 42 plasmid p42e, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
aaagccggcggctacgggctgctgatcgacgcca	Protospacer
*  *********.*** ***********.  ***

24. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
aaagccggcggctacgggctgctgatcgacgcca	Protospacer
*  *********.*** ***********.  ***

25. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NC_021908 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
aaagccggcggctacgggctgctgatcgacgcca	Protospacer
*  *********.*** ***********.  ***

26. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcg-gatcca	CRISPR spacer
gcggccggcggccacctgctgctgttcgtggtgc-	Protospacer
.* ************ ******** *** *.* *

27. spacer 11.41|3121962|34|NC_016147|PILER-CR matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 7, identity: 0.794

--gtcctgcccaaggcctcggccacggtcatcgccg	CRISPR spacer
tggtcc--cccaagacctcggccaccgtcatccggg	Protospacer
  ****  ******.********** ******   *

28. spacer 11.56|3121764|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.794

aggtgcggt--ttgaggtcgacggcgacggcaacgt	CRISPR spacer
--atgcggccattgtggtcgacggcgacggcaccga	Protospacer
  .*****.  *** ***************** **

29. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctcgccggcggccacgtgctgctgatcggcgtgc	Protospacer
 .***************************  .

30. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctcgccggcggccacgtgctgctgatcggcgtgc	Protospacer
 .***************************  .

31. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctggccggcggccacgtgctgctgatcggtgtcc	Protospacer
 . **************************  .*

32. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NC_007765 (Rhizobium etli CFN 42 plasmid p42e, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
aaagccggcggctacgggctgctgatcgacgcca	Protospacer
*  *********.*** ***********.  ***

33. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
aaagccggcggctacgggctgctgatcgacgcca	Protospacer
*  *********.*** ***********.  ***

34. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NC_021908 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
aaagccggcggctacgggctgctgatcgacgcca	Protospacer
*  *********.*** ***********.  ***

35. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 7, identity: 0.794

accgccggcggccacgtgctgctgatcg-gatcca	CRISPR spacer
gcggccggcggccacctgctgctgttcgtggtgc-	Protospacer
.* ************ ******** *** *.* *

36. spacer 11.59|3121959|34|NC_016147|CRISPRCasFinder,CRT matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 7, identity: 0.794

--gtcctgcccaaggcctcggccacggtcatcgccg	CRISPR spacer
tggtcc--cccaagacctcggccaccgtcatccggg	Protospacer
  ****  ******.********** ******   *

37. spacer 11.31|3121305|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

cgcttcgtcggcacgacgatggcgttcgaggacc	CRISPR spacer
cgcttcatcggcacgacgatcgcgagcgtcggcg	Protospacer
******.************* ***  **  *.*

38. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.765

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctggccggcggccacgtgctgctgatcggcgtgc	Protospacer
 . **************************  .

39. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctggccggcggccacgtgctgctgatcggcgtgc	Protospacer
 . **************************  .

40. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
gccgccggcgccgacgtgctgctgatggtgggca	Protospacer
.********* * ************* * .  **

41. spacer 11.41|3121962|34|NC_016147|PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

gtcctgcccaaggcctcggccacggtcatcgccg	CRISPR spacer
gacgcgaacgaggcctcggccaaggtcttcgccg	Protospacer
* * .*  *.************ **** ******

42. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.765

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctggccggcggccacgtgctgctgatcggcgtgc	Protospacer
 . **************************  .

43. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctggccggcggccacgtgctgctgatcggcgtgc	Protospacer
 . **************************  .

44. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
gccgccggcgccgacgtgctgctgatggtgggca	Protospacer
.********* * ************* * .  **

45. spacer 11.59|3121959|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

gtcctgcccaaggcctcggccacggtcatcgccg	CRISPR spacer
gacgcgaacgaggcctcggccaaggtcttcgccg	Protospacer
* * .*  *.************ **** ******

46. spacer 11.8|3119795|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to CP021131 (Meiothermus taiwanensis strain WR-220 plasmid pMtWR-220, complete sequence) position: , mismatch: 9, identity: 0.735

ccgcatgcggcccggctgacggccaagggcgcgg	CRISPR spacer
caggcggcggcctggctggcggccaagggctacg	Protospacer
* *   ******.*****.***********   *

47. spacer 11.20|3120585|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017899 (Sphingopyxis sp. FD7 plasmid pSFD01, complete sequence) position: , mismatch: 9, identity: 0.735

tccttggccaggctgcgcaaggcctggcgcacgc	CRISPR spacer
actgctgacacgctgcgcaaggtctggcgcacgg	Protospacer
 *. . * ** ***********.**********

48. spacer 11.20|3120585|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 9, identity: 0.735

tccttggccaggctgcgcaaggcctggcgcacgc	CRISPR spacer
tcgaccacgaggccgcgcaaggccgggcgcacga	Protospacer
**  . .* ****.********** ********

49. spacer 11.20|3120585|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 9, identity: 0.735

tccttggccaggctgcgcaaggcctggcgcacgc	CRISPR spacer
tcgaccacgaggccgcgcaaggccgggcgcacga	Protospacer
**  . .* ****.********** ********

50. spacer 11.20|3120585|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

tccttggccaggctgcgcaaggcctggcgcacgc	CRISPR spacer
tgcgcggccatgctgcgcaaggccaggcggcggt	Protospacer
* * .***** ************* ****   *.

51. spacer 11.20|3120585|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

tccttggccaggctgcgcaaggcctggcgcacgc	CRISPR spacer
tgcgcggccatgctgcgcaaggccaggcggcggt	Protospacer
* * .***** ************* ****   *.

52. spacer 11.21|3120650|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 9, identity: 0.735

tcgccgatctgggtcgatggccagcggcatccgc	CRISPR spacer
ccgccggtccgggtcgatggccagccgtcccccg	Protospacer
.*****.**.*************** *. .**

53. spacer 11.21|3120650|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017242 (Rhizobium etli 8C-3 plasmid pRsp8C3a, complete sequence) position: , mismatch: 9, identity: 0.735

tcgccgatctgggtcgatggccagcggcatccgc	CRISPR spacer
cctccagcaggggtcgatggccagcgtcatcggc	Protospacer
.* **...  **************** **** **

54. spacer 11.26|3120977|33|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NC_042091 (Pseudomonas phage nickie, complete genome) position: , mismatch: 9, identity: 0.727

gtgatcttctgaccggtctcgaacggcggccag	CRISPR spacer
agcaccttctgacctgcctcgaacggcgggtcg	Protospacer
.  *.********* *.************ . *

55. spacer 11.31|3121305|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027024 (Streptomyces sp. WAC00288 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.735

cgcttcgtcggcacgacgatggcgttcgaggacc	CRISPR spacer
caacgggagggaacgacgatggcgtacgaggacc	Protospacer
*. .  *  ** ************* ********

56. spacer 11.31|3121305|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

cgcttcgtcggcacgacgatggcgttcgaggacc	CRISPR spacer
accatggtcagcacgacgatggcgatcgaggcgt	Protospacer
  * * ***.************** ******  .

57. spacer 11.31|3121305|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 9, identity: 0.735

cgcttcgtcggcacgacgatggcgttcgaggacc	CRISPR spacer
accatggtcagcacgacgatggcgatcgaggcgt	Protospacer
  * * ***.************** ******  .

58. spacer 11.31|3121305|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

cgcttcgtcggcacgacgatggcgttcgaggacc	CRISPR spacer
accatggtcagcacgacgatggcgatcgaggcgt	Protospacer
  * * ***.************** ******  .

59. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctggccagcggccacgtgctgctgatcggcgtgc	Protospacer
 . ***.**********************  .

60. spacer 11.41|3121962|34|NC_016147|PILER-CR matches to NZ_CP054602 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.735

gtcctgcccaaggcctcggccacggtcatcgccg	CRISPR spacer
gcgtatcccaaggcctcggccccggtcatcagcc	Protospacer
*. .  *************** ********. *

61. spacer 11.41|3121962|34|NC_016147|PILER-CR matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 9, identity: 0.735

gtcctgcccaaggcctcggccacggtcatcgccg	CRISPR spacer
gcgcaagccaaggccgcggccgcggtcatcgacc	Protospacer
*. * . ******** *****.********* *

62. spacer 11.45|3122224|34|NC_016147|PILER-CR matches to NC_001396 (Xanthomonas phage Cf1c, complete genome) position: , mismatch: 9, identity: 0.735

atcgtgtgaacctcggccgacttgtacgcaccaa	CRISPR spacer
atcgtgtggacctcagccgacttgtagaacttga	Protospacer
********.*****.*********** .  ...*

63. spacer 11.45|3122224|34|NC_016147|PILER-CR matches to AB910602 (Xanthomonas phage XacF1 DNA, complete genome) position: , mismatch: 9, identity: 0.735

atcgtgtgaacctcggccgacttgtacgcaccaa	CRISPR spacer
atcgtgtggacctcagccgacttgtagaacttga	Protospacer
********.*****.*********** .  ...*

64. spacer 11.45|3122224|34|NC_016147|PILER-CR matches to M57538 (Xanthomonas phage Cf1c unknown gene) position: , mismatch: 9, identity: 0.735

atcgtgtgaacctcggccgacttgtacgcaccaa	CRISPR spacer
atcgtgtggacctcagccgacttgtagaacttga	Protospacer
********.*****.*********** .  ...*

65. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctggccagcggccacgtgctgctgatcggcgtgc	Protospacer
 . ***.**********************  .

66. spacer 11.59|3121959|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP054602 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.735

gtcctgcccaaggcctcggccacggtcatcgccg	CRISPR spacer
gcgtatcccaaggcctcggccccggtcatcagcc	Protospacer
*. .  *************** ********. *

67. spacer 11.59|3121959|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 9, identity: 0.735

gtcctgcccaaggcctcggccacggtcatcgccg	CRISPR spacer
gcgcaagccaaggccgcggccgcggtcatcgacc	Protospacer
*. * . ******** *****.********* *

68. spacer 11.63|3122221|34|NC_016147|CRISPRCasFinder,CRT matches to NC_001396 (Xanthomonas phage Cf1c, complete genome) position: , mismatch: 9, identity: 0.735

atcgtgtgaacctcggccgacttgtacgcaccaa	CRISPR spacer
atcgtgtggacctcagccgacttgtagaacttga	Protospacer
********.*****.*********** .  ...*

69. spacer 11.63|3122221|34|NC_016147|CRISPRCasFinder,CRT matches to AB910602 (Xanthomonas phage XacF1 DNA, complete genome) position: , mismatch: 9, identity: 0.735

atcgtgtgaacctcggccgacttgtacgcaccaa	CRISPR spacer
atcgtgtggacctcagccgacttgtagaacttga	Protospacer
********.*****.*********** .  ...*

70. spacer 11.63|3122221|34|NC_016147|CRISPRCasFinder,CRT matches to M57538 (Xanthomonas phage Cf1c unknown gene) position: , mismatch: 9, identity: 0.735

atcgtgtgaacctcggccgacttgtacgcaccaa	CRISPR spacer
atcgtgtggacctcagccgacttgtagaacttga	Protospacer
********.*****.*********** .  ...*

71. spacer 11.69|3122617|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP043507 (Acetobacter sp. KACC 21233 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

tcgactgtcatgccggcatcgccggtgcgcagag	CRISPR spacer
tcgactgccatgccggcgtcgccgaatggctggc	Protospacer
*******.*********.******.   ** *.

72. spacer 11.8|3119795|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 10, identity: 0.706

ccgcatgcggcccggctgacggccaagggcgcgg	CRISPR spacer
aaggccgcggcccggctgacggtcaagggccgat	Protospacer
  *  .****************.*******  .

73. spacer 11.8|3119795|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 10, identity: 0.706

ccgcatgcggcccggctgacggccaagggcgcgg	CRISPR spacer
aaggccgccgcccggctgacggtcaagggccggt	Protospacer
  *  .** *************.*******  *

74. spacer 11.8|3119795|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 10, identity: 0.706

ccgcatgcggcccggctgacggccaagggcgcgg	CRISPR spacer
aaggccgccgcccggctgacggtcaagggccggt	Protospacer
  *  .** *************.*******  *

75. spacer 11.8|3119795|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 10, identity: 0.706

ccgcatgcggcccggctgacggccaagggcgcgg	CRISPR spacer
aaggccgccgcccggctgacggtcaagggccggt	Protospacer
  *  .** *************.*******  *

76. spacer 11.8|3119795|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 10, identity: 0.706

ccgcatgcggcccggctgacggccaagggcgcgg	CRISPR spacer
aaggccgccgcccggctgacggtcaagggccggt	Protospacer
  *  .** *************.*******  *

77. spacer 11.8|3119795|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 10, identity: 0.706

ccgcatgcggcccggctgacggccaagggcgcgg	CRISPR spacer
aaggccgccgcccggctgacggtcaagggccggt	Protospacer
  *  .** *************.*******  *

78. spacer 11.8|3119795|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 10, identity: 0.706

ccgcatgcggcccggctgacggccaagggcgcgg	CRISPR spacer
aaggccgccgcccggctgacggtcaagggccggt	Protospacer
  *  .** *************.*******  *

79. spacer 11.8|3119795|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 10, identity: 0.706

ccgcatgcggcccggctgacggccaagggcgcgg	CRISPR spacer
aaggccgcggcccggctgacggtcaggggccggt	Protospacer
  *  .****************.**.****  *

80. spacer 11.20|3120585|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 10, identity: 0.706

tccttggccaggctgcgcaaggcctggcgcacgc	CRISPR spacer
ttgcgcgcccggctgcgcaaggcccggcgcgcca	Protospacer
*. .  *** **************.*****.*

81. spacer 11.21|3120650|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 10, identity: 0.706

tcgccgatctgggtcgatggccagcggcatccgc	CRISPR spacer
cctcgaggaagggtcgatggccagcgtcatcggc	Protospacer
.* * ..   **************** **** **

82. spacer 11.25|3120910|36|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054604 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed5, complete sequence) position: , mismatch: 10, identity: 0.722

tccccgaatccctcgcccagctcgcccaccagcgcc	CRISPR spacer
atcgagaatccctcgtccacctcgcccaccacatct	Protospacer
 .*  **********.*** ***********   *.

83. spacer 11.25|3120910|36|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025809 (Sulfitobacter sp. SK025 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

tccccgaatccctcgcccagctcgcccaccagcgcc	CRISPR spacer
atcgagaatccctcgtccacctcgcccaccacatct	Protospacer
 .*  **********.*** ***********   *.

84. spacer 11.25|3120910|36|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to MN694285 (Marine virus AFVG_250M134, complete genome) position: , mismatch: 10, identity: 0.722

tccccgaatccctcgcccagctcgcccaccagcgcc	CRISPR spacer
gacctgaatccctcgcccagctcggccatcttatcg	Protospacer
  **.******************* ***.*    *

85. spacer 11.26|3120977|33|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 10, identity: 0.697

gtgatcttctgaccggtctcgaacggcggccag	CRISPR spacer
tgcatgttctgaccgggctcgaacggccggggc	Protospacer
   ** ********** ********** *  .

86. spacer 11.31|3121305|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 10, identity: 0.706

cgcttcgtcggcacgacgatggcgttcgaggacc	CRISPR spacer
gtcctcgtcggcacgatgatggcgtacggcgcga	Protospacer
  *.************.******** **. *

87. spacer 11.34|3121505|33|NC_016147|PILER-CR matches to NZ_CP042998 (Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence) position: , mismatch: 10, identity: 0.697

ggttcctggcccgccggccaagcgagttgccgt	CRISPR spacer
acgccctggcccgccgggcacgcgagttcctcg	Protospacer
.  .************* ** ******* *.

88. spacer 11.38|3121767|34|NC_016147|PILER-CR matches to NZ_CP038638 (Cupriavidus oxalaticus strain X32 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

aggtgcggtttgaggtcgacggcgacggcaacgt	CRISPR spacer
gggtgccgtttcaggtcgacggcgaaaagacccc	Protospacer
.***** **** ************* .. * * .

89. spacer 11.38|3121767|34|NC_016147|PILER-CR matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 10, identity: 0.706

aggtgcggtttgaggtcgacggcgacggcaacgt	CRISPR spacer
gccgtctgcttgaggtcgacggcgaaggcatcga	Protospacer
.    * *.**************** **** **

90. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.706

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
cggcccggcggccacgtgctgctgaccgacgtcg	Protospacer
    *********************.**.  .*.

91. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NC_023282 (Streptomyces sp. FR1 plasmid pFRL2, complete sequence) position: , mismatch: 10, identity: 0.706

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctcgccgccggccacgtcctgctgatcgagcggg	Protospacer
 .***** ********* **********...  .

92. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.706

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
cggcccggcggccacgtgctgctgaccgacgtcg	Protospacer
    *********************.**.  .*.

93. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NZ_LR134450 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence) position: , mismatch: 10, identity: 0.706

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
accgccgacggccacgcgctgctgcaccacccgc	Protospacer
*******.********.*******  * . .*

94. spacer 11.49|3122488|34|NC_016147|PILER-CR matches to NC_020879 (Aeromonas phage Aes012, complete genome) position: , mismatch: 10, identity: 0.706

tcatcagatgctccgggagttttggtgtctggga	CRISPR spacer
aacttaactgctccgaaagttttggtgtctggcg	Protospacer
   *.*. *******..*************** .

95. spacer 11.49|3122488|34|NC_016147|PILER-CR matches to NC_020879 (Aeromonas phage Aes012, complete genome) position: , mismatch: 10, identity: 0.706

tcatcagatgctccgggagttttggtgtctggga	CRISPR spacer
agcttaactgctccgaaagttttggtgtctggcg	Protospacer
   *.*. *******..*************** .

96. spacer 11.52|3121502|33|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP042998 (Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence) position: , mismatch: 10, identity: 0.697

ggttcctggcccgccggccaagcgagttgccgt	CRISPR spacer
acgccctggcccgccgggcacgcgagttcctcg	Protospacer
.  .************* ** ******* *.

97. spacer 11.56|3121764|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP038638 (Cupriavidus oxalaticus strain X32 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

aggtgcggtttgaggtcgacggcgacggcaacgt	CRISPR spacer
gggtgccgtttcaggtcgacggcgaaaagacccc	Protospacer
.***** **** ************* .. * * .

98. spacer 11.56|3121764|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 10, identity: 0.706

aggtgcggtttgaggtcgacggcgacggcaacgt	CRISPR spacer
gccgtctgcttgaggtcgacggcgaaggcatcga	Protospacer
.    * *.**************** **** **

99. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.706

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
cggcccggcggccacgtgctgctgaccgacgtcg	Protospacer
    *********************.**.  .*.

100. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NC_023282 (Streptomyces sp. FR1 plasmid pFRL2, complete sequence) position: , mismatch: 10, identity: 0.706

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
ctcgccgccggccacgtcctgctgatcgagcggg	Protospacer
 .***** ********* **********...  .

101. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.706

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
cggcccggcggccacgtgctgctgaccgacgtcg	Protospacer
    *********************.**.  .*.

102. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NZ_LR134450 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence) position: , mismatch: 10, identity: 0.706

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
accgccgacggccacgcgctgctgcaccacccgc	Protospacer
*******.********.*******  * . .*

103. spacer 11.67|3122485|34|NC_016147|CRISPRCasFinder,CRT matches to NC_020879 (Aeromonas phage Aes012, complete genome) position: , mismatch: 10, identity: 0.706

tcatcagatgctccgggagttttggtgtctggga	CRISPR spacer
aacttaactgctccgaaagttttggtgtctggcg	Protospacer
   *.*. *******..*************** .

104. spacer 11.67|3122485|34|NC_016147|CRISPRCasFinder,CRT matches to NC_020879 (Aeromonas phage Aes012, complete genome) position: , mismatch: 10, identity: 0.706

tcatcagatgctccgggagttttggtgtctggga	CRISPR spacer
agcttaactgctccgaaagttttggtgtctggcg	Protospacer
   *.*. *******..*************** .

105. spacer 11.12|3120058|35|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NC_015314 (Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence) position: , mismatch: 11, identity: 0.686

ttcatcatgcggccgtctgcgccgccgtcggtctg	CRISPR spacer
ggcatcatgcggccgcctgccccgccgcgtcccca	Protospacer
  *************.**** ******.   .*..

106. spacer 11.12|3120058|35|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.686

ttcatcatgcggccgtctgcgccgccgtcggtctg	CRISPR spacer
ccgcctttctggccgtctgcgccgccttcggcctg	Protospacer
..  .. * .**************** ****.***

107. spacer 11.12|3120058|35|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034817 (Paracoccus sp. Arc7-R13 plasmid unnamed7, complete sequence) position: , mismatch: 11, identity: 0.686

ttcatcatgcggccgtctgcgccgccgtcggtctg	CRISPR spacer
aggacgcggcggccgtcggcgccgccatcggtcgc	Protospacer
   *.   ********* ********.******

108. spacer 11.12|3120058|35|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.686

ttcatcatgcggccgtctgcgccgccgtcggtctg	CRISPR spacer
ccgcctttctggccgtctgcgccgccttcggcctg	Protospacer
..  .. * .**************** ****.***

109. spacer 11.12|3120058|35|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 11, identity: 0.686

ttcatcatgcggccgtctgcgccgccgtcggtctg	CRISPR spacer
ccgcctttctggccgtctgcgccgccttcggcctg	Protospacer
..  .. * .**************** ****.***

110. spacer 11.20|3120585|34|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NC_009956 (Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence) position: , mismatch: 11, identity: 0.676

tccttggccaggctgcgcaaggcctggcgcacgc	CRISPR spacer
cgaaccggcaggctgcgcaaggacaggcgcacag	Protospacer
.   . * ************** * *******.

111. spacer 11.51|3121436|35|NC_016147|CRISPRCasFinder,CRT matches to NZ_CP041045 (Paracoccus sp. AK26 plasmid pAK1, complete sequence) position: , mismatch: 11, identity: 0.686

attgtgtgcccatctgcctggcccaggcatcggcg	CRISPR spacer
cgaagaaatccatctgcccgtcccaggcatcggcg	Protospacer
   . . ..*********.* **************

112. spacer 11.12|3120058|35|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 12, identity: 0.657

ttcatcatgcggccgtctgcgccgccgtcggtctg	CRISPR spacer
ccgccttcctggccgtctgcgccgccttcggcctg	Protospacer
..  .. . .**************** ****.***

113. spacer 11.12|3120058|35|NC_016147|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 12, identity: 0.657

ttcatcatgcggccgtctgcgccgccgtcggtctg	CRISPR spacer
ccgccttcctggccgtctgcgccgccttcggcctg	Protospacer
..  .. . .**************** ****.***

114. spacer 11.40|3121897|34|NC_016147|PILER-CR matches to NC_005073 (Rhodococcus erythropolis linear plasmid pBD2, complete sequence) position: , mismatch: 12, identity: 0.647

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
gatctcggcggccgcgagctgctgatcggtgttg	Protospacer
. . .********.** ************  ...

115. spacer 11.58|3121894|34|NC_016147|CRISPRCasFinder,CRT matches to NC_005073 (Rhodococcus erythropolis linear plasmid pBD2, complete sequence) position: , mismatch: 12, identity: 0.647

accgccggcggccacgtgctgctgatcggatcca	CRISPR spacer
gatctcggcggccgcgagctgctgatcggtgttg	Protospacer
. . .********.** ************  ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

332939 : 339777

Escherichia_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043290316.1\|332939_334004_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.5e-84	47.7
WP_014159336.1\|334184_335072_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.8e-94	56.2
WP_014159337.1\|335068_335626_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.4e-48	52.8
WP_014159338.1\|335622_336528_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.2e-21	34.9
WP_014159339.1\|336650_337817_+	nucleotide sugar dehydrogenase	M1HIV9	Acanthocystis_turfacea_Chlorella_virus	2.0e-114	54.1
WP_014159340.1\|338430_339777_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	4.4e-33	26.3

DBSCAN-SWA_2

1258204 : 1267327

Micromonas_pusilla_virus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043291010.1\|1258204_1259872_+	ubiquinone biosynthesis protein UbiB	G8DDN0	Micromonas_pusilla_virus	5.1e-39	30.3
WP_014160184.1\|1260063_1260708_+	transcriptional repressor LexA	A0A218MND2	uncultured_virus	4.4e-07	32.5
WP_014160185.1\|1260878_1261913_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	2.4e-111	60.7
WP_014160186.1\|1262065_1262581_+	regulatory protein RecX	NA	NA	NA	NA
WP_014160187.1\|1262694_1265346_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	8.8e-86	39.7
WP_014160188.1\|1265486_1265696_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	2.9e-13	67.3
WP_014160189.1\|1266319_1267327_-	NAD-dependent epimerase	A0A1D8EQC0	Escherichia_phage	7.1e-20	22.5

DBSCAN-SWA_3

2221998 : 2282035

Acanthocystis_turfacea_Chlorella_virus(20.0%)

transposase,protease,tRNA,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043290530.1\|2221998_2222454_+\|transposase	transposase	NA	NA	NA	NA
WP_014161053.1\|2222592_2223984_-	DNA repair protein RadA	NA	NA	NA	NA
WP_014161054.1\|2224110_2225049_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_014161055.1\|2225080_2226385_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_043290532.1\|2226420_2226681_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_014161057.1\|2226670_2227549_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_014161058.1\|2227713_2228691_+	hydroxyacid dehydrogenase	M1HUT5	Acanthocystis_turfacea_Chlorella_virus	2.0e-11	27.6
WP_014161059.1\|2229092_2229305_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_043290534.1\|2229396_2229582_-	hypothetical protein	NA	NA	NA	NA
WP_043290536.1\|2229825_2230968_-	DUF1501 domain-containing protein	NA	NA	NA	NA
WP_014161062.1\|2230969_2232355_-	DUF1800 domain-containing protein	NA	NA	NA	NA
WP_014161063.1\|2232612_2232990_-	DUF4870 domain-containing protein	NA	NA	NA	NA
WP_014161064.1\|2233110_2234472_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_014161065.1\|2234545_2235079_+	DUF615 domain-containing protein	NA	NA	NA	NA
WP_014161066.1\|2235462_2236908_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_014161067.1\|2236953_2240877_-	TIGR02099 family protein	NA	NA	NA	NA
WP_014161068.1\|2241222_2242719_-	ribonuclease G	NA	NA	NA	NA
WP_014161069.1\|2242718_2243285_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_014161070.1\|2243419_2244151_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_014161071.1\|2244394_2247445_+	TonB-dependent receptor	NA	NA	NA	NA
WP_052299792.1\|2247597_2249154_+	sulfotransferase family protein	NA	NA	NA	NA
WP_014161073.1\|2249150_2250719_+	sulfotransferase family protein	NA	NA	NA	NA
WP_014161074.1\|2250823_2251294_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_014161075.1\|2251309_2251723_-	ribosome silencing factor	NA	NA	NA	NA
WP_148268120.1\|2251754_2252612_-	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_014161077.1\|2252884_2253928_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_014161078.1\|2253930_2254452_-	hypothetical protein	NA	NA	NA	NA
WP_014161079.1\|2254571_2257205_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	2.0e-170	39.9
WP_014161080.1\|2257299_2257968_-	DUF998 domain-containing protein	NA	NA	NA	NA
WP_014161081.1\|2258107_2258968_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.7e-12	42.9
WP_014161082.1\|2259427_2260270_+	cyanophycinase	NA	NA	NA	NA
WP_014161083.1\|2260278_2263077_+	cyanophycin synthetase	NA	NA	NA	NA
WP_014161084.1\|2263112_2264885_+	Mur ligase	NA	NA	NA	NA
WP_014161086.1\|2265224_2265431_-	hypothetical protein	NA	NA	NA	NA
WP_014161087.1\|2265630_2266422_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_014161088.1\|2266418_2266703_+	DUF4190 domain-containing protein	NA	NA	NA	NA
WP_014161089.1\|2266709_2267765_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_014161090.1\|2267761_2268802_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_043290538.1\|2268795_2269710_+	DMT family transporter	NA	NA	NA	NA
WP_014161092.1\|2269731_2270424_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_148268122.1\|2271169_2271679_-	hypothetical protein	NA	NA	NA	NA
WP_148268123.1\|2272170_2272767_-	hypothetical protein	NA	NA	NA	NA
WP_083833538.1\|2273336_2274302_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_014161095.1\|2274850_2276275_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_043290539.1\|2276271_2278446_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	7.8e-48	29.8
WP_043291238.1\|2278881_2279574_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_014161098.1\|2280090_2281659_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	6.9e-123	44.5
WP_148268124.1\|2281630_2282035_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016147

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection