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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_016584 Desulfosporosinus orientis DSM 765, complete sequence 5 crisprs DEDDh,WYL,cas3HD,RT,DinG,csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2 1 4 7 0

Results visualization

1. NC_016584
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016584_1 1916617-1917981 TypeI NA
20 spacers
cas3,cas5,cas8c,cas7,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016584_2 1926565-1928724 TypeI I-C
32 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016584_3 3285294-3285500 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016584_4 3917736-3917845 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016584_5 5171757-5171977 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_016584_5 5.2|5171914|34|NC_016584|PILER-CR 5171914-5171947 34 NC_016584.1 5171978-5172011 2 0.941

1. spacer 5.2|5171914|34|NC_016584|PILER-CR matches to position: 5171978-5172011, mismatch: 2, identity: 0.941

acccactgcttcagatgctgtttcattgtatact	CRISPR spacer
actcgctgcttcagatgctgtttcattgtatact	Protospacer
**.*.*****************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_016584_1 1.15|1917582|34|NC_016584|PILER-CR 1917582-1917615 34 NZ_CP017565 Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence 333997-334030 9 0.735
NC_016584_1 1.36|1917648|33|NC_016584|CRISPRCasFinder,CRT 1917648-1917680 33 MN850617 Escherichia phage forsur, complete genome 14237-14269 10 0.697
NC_016584_1 1.16|1917647|34|NC_016584|PILER-CR 1917647-1917680 34 MN850617 Escherichia phage forsur, complete genome 14237-14270 11 0.676
NC_016584_1 1.35|1917583|33|NC_016584|CRISPRCasFinder,CRT 1917583-1917615 33 NZ_CP017565 Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence 333997-334029 11 0.667

1. spacer 1.15|1917582|34|NC_016584|PILER-CR matches to NZ_CP017565 (Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence) position: , mismatch: 9, identity: 0.735

tggatt---atatcacgccggataccaattcccgcaa	CRISPR spacer
---attcccgcatcgcgccggataccaatccccgctt	Protospacer
   ***   ..***.**************.*****  

2. spacer 1.36|1917648|33|NC_016584|CRISPRCasFinder,CRT matches to MN850617 (Escherichia phage forsur, complete genome) position: , mismatch: 10, identity: 0.697

cccatcaacctgaccatttgcctccatggttgc	CRISPR spacer
agcatcaagctgaccctttgcctccagcagacc	Protospacer
  ****** ****** **********  .   *

3. spacer 1.16|1917647|34|NC_016584|PILER-CR matches to MN850617 (Escherichia phage forsur, complete genome) position: , mismatch: 11, identity: 0.676

tcccatcaacctgaccatttgcctccatggttgc	CRISPR spacer
gagcatcaagctgaccctttgcctccagcagacc	Protospacer
   ****** ****** **********  .   *

4. spacer 1.35|1917583|33|NC_016584|CRISPRCasFinder,CRT matches to NZ_CP017565 (Paraburkholderia sprentiae WSM5005 plasmid pl2WSM5005, complete sequence) position: , mismatch: 11, identity: 0.667

ggattatatcacgccggataccaattcccgcaa	CRISPR spacer
ttcccgcatcgcgccggataccaatccccgctt	Protospacer
   ....***.**************.*****  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 33571 : 41945 9 Streptococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_2 672681 : 681342 9 uncultured_virus(16.67%) integrase,transposase attL 674305:674328|attR 689214:689237
DBSCAN-SWA_3 713306 : 720549 7 Synechococcus_phage(42.86%) NA NA
DBSCAN-SWA_4 2307096 : 2329159 25 Bacillus_phage(50.0%) integrase,transposase attL 2297660:2297673|attR 2324960:2324973
DBSCAN-SWA_5 2343631 : 2361006 17 Bacillus_phage(25.0%) integrase,transposase attL 2352723:2352737|attR 2361102:2361116
DBSCAN-SWA_6 3884745 : 3910605 20 Bacillus_phage(75.0%) bacteriocin,protease NA
DBSCAN-SWA_7 5591901 : 5640261 55 Clostridium_phage(30.0%) tail,plate,portal,holin,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage