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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017495 Lactococcus lactis subsp. cremoris A76 plasmid pQA518, complete sequence 0 crisprs NA 0 0 0 0
NC_017492 Lactococcus lactis subsp. cremoris A76, complete genome 2 crisprs cas3,DinG,csa3,WYL,DEDDh 0 0 20 0
NC_017497 Lactococcus lactis subsp. cremoris A76 plasmid pQA504, complete sequence 0 crisprs NA 0 0 0 0
NC_017493 Lactococcus lactis subsp. cremoris A76 plasmid pQA549, complete sequence 0 crisprs NA 0 0 0 0
NC_017496 Lactococcus lactis subsp. cremoris A76 plasmid pQA554, complete sequence 0 crisprs RT 0 0 1 0

Results visualization

1. NC_017496
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 32765 : 42082 9 Lactococcus_phage(62.5%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_017492
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017492_1 1580727-1580823 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017492_2 2174102-2174197 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 14040 : 72577 47 Bacillus_phage(23.08%) tRNA,transposase NA
DBSCAN-SWA_2 76242 : 135421 55 Bacillus_phage(23.08%) integrase,tRNA,transposase attL 72652:72669|attR 106803:106820
DBSCAN-SWA_3 438651 : 450808 14 uncultured_virus(30.0%) tRNA NA
DBSCAN-SWA_4 498174 : 503905 6 Lactococcus_phage(33.33%) transposase NA
DBSCAN-SWA_5 590193 : 697926 111 Lactococcus_phage(73.53%) terminase,portal,transposase,holin,capsid,integrase,tail,head attL 622605:622626|attR 659567:659588
DBSCAN-SWA_6 854180 : 862230 7 Enterobacteria_phage(14.29%) transposase NA
DBSCAN-SWA_7 940129 : 1065048 108 Bacillus_phage(20.59%) transposase NA
DBSCAN-SWA_8 1085186 : 1134347 43 Bacillus_phage(16.67%) protease,tRNA,transposase NA
DBSCAN-SWA_9 1204081 : 1273546 54 Staphylococcus_phage(30.0%) tRNA,transposase NA
DBSCAN-SWA_10 1334059 : 1404920 57 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_11 1423927 : 1437645 11 Bacillus_virus(25.0%) NA NA
DBSCAN-SWA_12 1442917 : 1507320 55 Streptococcus_phage(33.33%) integrase,transposase attL 1445553:1445612|attR 1488577:1488770
DBSCAN-SWA_13 1535277 : 1577145 38 Staphylococcus_phage(28.57%) transposase NA
DBSCAN-SWA_14 1589366 : 1654357 48 Staphylococcus_phage(21.05%) tRNA,transposase NA
DBSCAN-SWA_15 1760815 : 1797200 27 Bacillus_phage(40.0%) bacteriocin,protease,transposase NA
DBSCAN-SWA_16 1945373 : 2014239 83 Lactococcus_phage(83.02%) terminase,portal,transposase,holin,integrase,tRNA,tail,protease,head attL 1957437:1957453|attR 2018540:2018556
DBSCAN-SWA_17 2111919 : 2120171 16 Lactococcus_phage(100.0%) terminase NA
DBSCAN-SWA_18 2124743 : 2181130 49 Lactococcus_phage(14.29%) integrase,tRNA,transposase attL 2122408:2122425|attR 2166671:2166688
DBSCAN-SWA_19 2252554 : 2304193 35 Bacillus_phage(33.33%) protease,tRNA,transposase NA
DBSCAN-SWA_20 2354727 : 2373241 29 Lactococcus_phage(86.36%) protease,transposase,head NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage