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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_016830 Pseudomonas fluorescens F113, complete sequence 7 crisprs DEDDh,DinG,csa3,WYL,cas3 5 0 6 1

Results visualization

1. NC_016830
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016830_1 569594-569718 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016830_2 1094717-1094855 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016830_3 1274419-1274512 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016830_4 2540049-2540146 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016830_5 2828052-2828179 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016830_6 4908140-4908348 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016830_7 6662645-6662772 Unclear NA
1 spacers
cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_016830_5 5.1|2828092|48|NC_016830|CRISPRCasFinder 2828092-2828139 48 NC_016830.1 472039-472086 0 1.0
NC_016830_5 5.1|2828092|48|NC_016830|CRISPRCasFinder 2828092-2828139 48 NC_016830.1 6318272-6318319 0 1.0
NC_016830_4 4.1|2540074|48|NC_016830|CRISPRCasFinder 2540074-2540121 48 NC_016830.1 3497841-3497888 1 0.979
NC_016830_5 5.1|2828092|48|NC_016830|CRISPRCasFinder 2828092-2828139 48 NC_016830.1 472127-472174 1 0.979
NC_016830_5 5.1|2828092|48|NC_016830|CRISPRCasFinder 2828092-2828139 48 NC_016830.1 472215-472262 1 0.979
NC_016830_5 5.1|2828092|48|NC_016830|CRISPRCasFinder 2828092-2828139 48 NC_016830.1 3289135-3289182 1 0.979
NC_016830_2 2.1|1094768|37|NC_016830|CRISPRCasFinder 1094768-1094804 37 NC_016830.1 472081-472117 2 0.946
NC_016830_5 5.1|2828092|48|NC_016830|CRISPRCasFinder 2828092-2828139 48 NC_016830.1 1094814-1094861 2 0.958
NC_016830_5 5.1|2828092|48|NC_016830|CRISPRCasFinder 2828092-2828139 48 NC_016830.1 6458703-6458750 2 0.958
NC_016830_6 6.1|4908189|44|NC_016830|PILER-CR 4908189-4908232 44 NC_016830.1 472172-472215 2 0.955
NC_016830_6 6.2|4908282|43|NC_016830|PILER-CR 4908282-4908324 43 NC_016830.1 4908349-4908391 2 0.953

1. spacer 5.1|2828092|48|NC_016830|CRISPRCasFinder matches to position: 472039-472086, mismatch: 0, identity: 1.0

tttgagcaggacctgtgggagcaaagcttgctcgcgaggcggcctgac	CRISPR spacer
tttgagcaggacctgtgggagcaaagcttgctcgcgaggcggcctgac	Protospacer
************************************************

2. spacer 5.1|2828092|48|NC_016830|CRISPRCasFinder matches to position: 6318272-6318319, mismatch: 0, identity: 1.0

tttgagcaggacctgtgggagcaaagcttgctcgcgaggcggcctgac	CRISPR spacer
tttgagcaggacctgtgggagcaaagcttgctcgcgaggcggcctgac	Protospacer
************************************************

3. spacer 4.1|2540074|48|NC_016830|CRISPRCasFinder matches to position: 3497841-3497888, mismatch: 1, identity: 0.979

gttctcccggtcgtacacccgtcagatctgtgggagcaaagcttgctc	CRISPR spacer
gttctcccggtcgtacacccgtcagatctgtgggggcaaagcttgctc	Protospacer
**********************************.*************

4. spacer 5.1|2828092|48|NC_016830|CRISPRCasFinder matches to position: 472127-472174, mismatch: 1, identity: 0.979

tttgagcaggacctgtgggagcaaagcttgctcgcgaggcggcctgac	CRISPR spacer
tttgagcaggacctgtgggagcaaagcttgctcgcgaggcgacctgac	Protospacer
*****************************************.******

5. spacer 5.1|2828092|48|NC_016830|CRISPRCasFinder matches to position: 472215-472262, mismatch: 1, identity: 0.979

tttgagcaggacctgtgggagcaaagcttgctcgcgaggcggcctgac	CRISPR spacer
tttgagcaggacctgtgggagcaaagcttgctcgcgaggcggccttac	Protospacer
********************************************* **

6. spacer 5.1|2828092|48|NC_016830|CRISPRCasFinder matches to position: 3289135-3289182, mismatch: 1, identity: 0.979

tttgagcaggacctgtgggagcaaagcttgctcgcgaggcggcctgac	CRISPR spacer
tttgagcaggacctgtgggagcaaagcttgctcgcgaggcagcctgac	Protospacer
****************************************.*******

7. spacer 2.1|1094768|37|NC_016830|CRISPRCasFinder matches to position: 472081-472117, mismatch: 2, identity: 0.946

cctgacagccgacctggttctcctggtcgtacaccca	CRISPR spacer
cctgacagccgacctggttctcccggtcgcacaccca	Protospacer
***********************.*****.*******

8. spacer 5.1|2828092|48|NC_016830|CRISPRCasFinder matches to position: 1094814-1094861, mismatch: 2, identity: 0.958

tttgagcaggacctgtgggagcaaagcttgctcgcgaggcggcctgac	CRISPR spacer
tttgagcaggacctgtgggagcaaagcttgctcgcgaggcggacttac	Protospacer
****************************************** ** **

9. spacer 5.1|2828092|48|NC_016830|CRISPRCasFinder matches to position: 6458703-6458750, mismatch: 2, identity: 0.958

tttgagcaggacctgtgggagcaaagcttgctcgcgaggcggcctgac	CRISPR spacer
tttgagcaggatctgtgggagcaaagcttgctcgcgaggcggccttac	Protospacer
***********.********************************* **

10. spacer 6.1|4908189|44|NC_016830|PILER-CR matches to position: 472172-472215, mismatch: 2, identity: 0.955

acagatcggatgggtgtacgaccgggagagccaggtcggctgtc	CRISPR spacer
acagatctgatgggtgtgcgaccgggagagccaggtcggctgtc	Protospacer
******* *********.**************************

11. spacer 6.2|4908282|43|NC_016830|PILER-CR matches to position: 4908349-4908391, mismatch: 2, identity: 0.953

agatctgatgaggtgtacaaccgggagagccaggtcggctact	CRISPR spacer
agatctgatggggtgtacgaccgggagagccaggtcggctact	Protospacer
**********.*******.************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1332056 : 1394318 58 Pseudomonas_phage(20.0%) tail,protease,plate,transposase,tRNA NA
DBSCAN-SWA_2 1397441 : 1429587 33 uncultured_Caudovirales_phage(33.33%) tRNA,tail,lysis NA
DBSCAN-SWA_3 2556067 : 2565526 9 uncultured_Caudovirales_phage(71.43%) tRNA NA
DBSCAN-SWA_4 4982630 : 5052795 79 uncultured_Caudovirales_phage(52.38%) portal,tail,terminase,protease,integrase,plate,transposase,head,capsid,holin,lysis attL 4985793:4985820|attR 5058702:5058729
DBSCAN-SWA_5 6271061 : 6329141 46 Lake_Baikal_phage(20.0%) holin,protease NA
DBSCAN-SWA_6 6677199 : 6721184 33 Enterobacteria_phage(28.57%) plate NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_016830.1|WP_014340581.1|6284934_6285264_-|sarcosine-oxidase-subunit-delta 6284934_6285264_- 109 aa aa NA NA NA 6271061-6329141 yes