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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_016928 Staphylococcus aureus subsp. aureus M013, complete sequence 11 crisprs cas3,DEDDh,DinG,csa3,WYL 8 3 11 1
NZ_CP039996 Staphylococcus aureus subsp. aureus M013 plasmid pM013, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NC_016928
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_1 775524-775609 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_2 952771-952928 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_3 1071296-1071388 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_4 1155534-1155786 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_5 1230138-1230230 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_6 1438197-1438276 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_7 1985029-1985110 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_8 2044800-2044885 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_9 2292382-2292466 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_10 2446948-2447040 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016928_11 2788763-2788848 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 622588-622613 0 1.0
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 1155770-1155795 0 1.0
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 1292780-1292805 0 1.0
NC_016928_2 2.2|952878|19|NC_016928|PILER-CR 952878-952896 19 NC_016928.2 831049-831067 1 0.947
NC_016928_2 2.2|952878|19|NC_016928|PILER-CR 952878-952896 19 NC_016928.2 1292847-1292865 1 0.947
NC_016928_2 2.2|952878|19|NC_016928|PILER-CR 952878-952896 19 NC_016928.2 1292905-1292923 1 0.947
NC_016928_2 2.2|952878|19|NC_016928|PILER-CR 952878-952896 19 NC_016928.2 1986482-1986500 1 0.947
NC_016928_2 2.2|952878|19|NC_016928|PILER-CR 952878-952896 19 NC_016928.2 2326685-2326703 1 0.947
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 NC_016928.2 831019-831047 1 0.966
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 NC_016928.2 1055101-1055129 1 0.966
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 NC_016928.2 1671182-1671210 1 0.966
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 NC_016928.2 1986452-1986480 1 0.966
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 NC_016928.2 2788829-2788857 1 0.966
NC_016928_4 4.2|1155617|29|NC_016928|PILER-CR 1155617-1155645 29 NC_016928.2 785002-785030 1 0.966
NC_016928_4 4.3|1155673|39|NC_016928|PILER-CR 1155673-1155711 39 NC_016928.2 785002-785040 1 0.974
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 830961-830989 1 0.966
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 867210-867238 1 0.966
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 1292704-1292732 1 0.966
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 1986511-1986539 1 0.966
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 2209927-2209955 1 0.966
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 2462320-2462348 1 0.966
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 887606-887634 1 0.966
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 1686570-1686598 1 0.966
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 2615203-2615231 1 0.966
NC_016928_9 9.1|2292412|25|NC_016928|CRISPRCasFinder 2292412-2292436 25 NC_016928.2 1880662-1880686 1 0.96
NC_016928_9 9.1|2292412|25|NC_016928|CRISPRCasFinder 2292412-2292436 25 NC_016928.2 2292468-2292492 1 0.96
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 784985-785010 1 0.962
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 785041-785066 1 0.962
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 1851817-1851842 1 0.962
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 2326743-2326768 1 0.962
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 830925-830950 1 0.962
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 2034754-2034779 1 0.962
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 2210007-2210032 1 0.962
NC_016928_1 1.1|775552|30|NC_016928|CRISPRCasFinder 775552-775581 30 NC_016928.2 816594-816623 2 0.933
NC_016928_2 2.2|952878|19|NC_016928|PILER-CR 952878-952896 19 NC_016928.2 183926-183944 2 0.895
NC_016928_2 2.2|952878|19|NC_016928|PILER-CR 952878-952896 19 NC_016928.2 622529-622547 2 0.895
NC_016928_2 2.2|952878|19|NC_016928|PILER-CR 952878-952896 19 NC_016928.2 932587-932605 2 0.895
NC_016928_2 2.2|952878|19|NC_016928|PILER-CR 952878-952896 19 NC_016928.2 1151519-1151537 2 0.895
NC_016928_2 2.2|952878|19|NC_016928|PILER-CR 952878-952896 19 NC_016928.2 1367484-1367502 2 0.895
NC_016928_2 2.2|952878|19|NC_016928|PILER-CR 952878-952896 19 NC_016928.2 1706269-1706287 2 0.895
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 NC_016928.2 887719-887747 2 0.931
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 NC_016928.2 1151653-1151681 2 0.931
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 NC_016928.2 1686514-1686542 2 0.931
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 NC_016928.2 821853-821881 2 0.931
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 NC_016928.2 1984996-1985024 2 0.931
NC_016928_4 4.3|1155673|39|NC_016928|PILER-CR 1155673-1155711 39 NC_016928.2 183886-183924 2 0.949
NC_016928_4 4.3|1155673|39|NC_016928|PILER-CR 1155673-1155711 39 NC_016928.2 622549-622587 2 0.949
NC_016928_4 4.3|1155673|39|NC_016928|PILER-CR 1155673-1155711 39 NC_016928.2 622605-622643 2 0.949
NC_016928_4 4.3|1155673|39|NC_016928|PILER-CR 1155673-1155711 39 NC_016928.2 785058-785096 2 0.949
NC_016928_4 4.3|1155673|39|NC_016928|PILER-CR 1155673-1155711 39 NC_016928.2 830895-830933 2 0.949
NC_016928_4 4.3|1155673|39|NC_016928|PILER-CR 1155673-1155711 39 NC_016928.2 1155787-1155825 2 0.949
NC_016928_4 4.3|1155673|39|NC_016928|PILER-CR 1155673-1155711 39 NC_016928.2 2292437-2292475 2 0.949
NC_016928_4 4.3|1155673|39|NC_016928|PILER-CR 1155673-1155711 39 NC_016928.2 2326760-2326798 2 0.949
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 821909-821937 2 0.931
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 831076-831104 2 0.931
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 1670937-1670965 2 0.931
NC_016928_4 4.4|1155739|29|NC_016928|PILER-CR 1155739-1155767 29 NC_016928.2 789515-789543 2 0.931
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 2130669-2130694 2 0.923
NC_016928_11 11.1|2788793|26|NC_016928|CRISPRCasFinder 2788793-2788818 26 NC_016928.2 2131007-2131032 2 0.923

1. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 622588-622613, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

2. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 1155770-1155795, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

3. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 1292780-1292805, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

4. spacer 2.2|952878|19|NC_016928|PILER-CR matches to position: 831049-831067, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacccc	Protospacer
****************.**

5. spacer 2.2|952878|19|NC_016928|PILER-CR matches to position: 1292847-1292865, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

6. spacer 2.2|952878|19|NC_016928|PILER-CR matches to position: 1292905-1292923, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

7. spacer 2.2|952878|19|NC_016928|PILER-CR matches to position: 1986482-1986500, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

8. spacer 2.2|952878|19|NC_016928|PILER-CR matches to position: 2326685-2326703, mismatch: 1, identity: 0.947

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccacacc	Protospacer
**************** **

9. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to position: 831019-831047, mismatch: 1, identity: 0.966

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
************.****************

10. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to position: 1055101-1055129, mismatch: 1, identity: 0.966

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
************.****************

11. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to position: 1671182-1671210, mismatch: 1, identity: 0.966

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
************.****************

12. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to position: 1986452-1986480, mismatch: 1, identity: 0.966

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
************.****************

13. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to position: 2788829-2788857, mismatch: 1, identity: 0.966

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacaataatg	Protospacer
************.****************

14. spacer 4.2|1155617|29|NC_016928|PILER-CR matches to position: 785002-785030, mismatch: 1, identity: 0.966

agctggcagaaagtcagcttacaataacg	CRISPR spacer
agctggcggaaagtcagcttacaataacg	Protospacer
*******.*********************

15. spacer 4.3|1155673|39|NC_016928|PILER-CR matches to position: 785002-785040, mismatch: 1, identity: 0.974

agctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
agctggcggaaagtcagcttacaataacgtgcaagttgg	Protospacer
*******.*******************************

16. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 830961-830989, mismatch: 1, identity: 0.966

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggattcccaatttctacagacaa	Protospacer
*************************.***

17. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 867210-867238, mismatch: 1, identity: 0.966

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggattcccaatttctacagacaa	Protospacer
*************************.***

18. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 1292704-1292732, mismatch: 1, identity: 0.966

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggattcccaatttctacagacaa	Protospacer
*************************.***

19. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 1986511-1986539, mismatch: 1, identity: 0.966

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggattcccaatttctacagacaa	Protospacer
*************************.***

20. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 2209927-2209955, mismatch: 1, identity: 0.966

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggattcccaatttctacagacaa	Protospacer
*************************.***

21. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 2462320-2462348, mismatch: 1, identity: 0.966

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggattcccaatttctacagacaa	Protospacer
*************************.***

22. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 887606-887634, mismatch: 1, identity: 0.966

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggattcccaatttctacagacaa	Protospacer
*************************.***

23. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 1686570-1686598, mismatch: 1, identity: 0.966

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggattcccaatttctacagacaa	Protospacer
*************************.***

24. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 2615203-2615231, mismatch: 1, identity: 0.966

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggattcccaatttctacagacaa	Protospacer
*************************.***

25. spacer 9.1|2292412|25|NC_016928|CRISPRCasFinder matches to position: 1880662-1880686, mismatch: 1, identity: 0.96

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgtcagcttctatgttggggccccg	Protospacer
***********.*************

26. spacer 9.1|2292412|25|NC_016928|CRISPRCasFinder matches to position: 2292468-2292492, mismatch: 1, identity: 0.96

tgtcagcttctgtgttggggccccg	CRISPR spacer
tgtcagcttctatgttggggccccg	Protospacer
***********.*************

27. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 784985-785010, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

28. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 785041-785066, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

29. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 1851817-1851842, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagctactatgttggggccccg	Protospacer
********* ****************

30. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 2326743-2326768, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

31. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 830925-830950, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

32. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 2034754-2034779, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgacagcttctatgttggggccccg	Protospacer
*** **********************

33. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 2210007-2210032, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtgttggggccccg	Protospacer
************.*************

34. spacer 1.1|775552|30|NC_016928|CRISPRCasFinder matches to position: 816594-816623, mismatch: 2, identity: 0.933

cagagaaattggaacgccaatttctacagg	CRISPR spacer
caaagaaattggaacaccaatttctacagg	Protospacer
**.************.**************

35. spacer 2.2|952878|19|NC_016928|PILER-CR matches to position: 183926-183944, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccccacc	Protospacer
************** * **

36. spacer 2.2|952878|19|NC_016928|PILER-CR matches to position: 622529-622547, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctatgttggggcccacacc	Protospacer
**.************* **

37. spacer 2.2|952878|19|NC_016928|PILER-CR matches to position: 932587-932605, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggcccgcccc	Protospacer
**************.*.**

38. spacer 2.2|952878|19|NC_016928|PILER-CR matches to position: 1151519-1151537, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctatgttggggcccacccc	Protospacer
**.*************.**

39. spacer 2.2|952878|19|NC_016928|PILER-CR matches to position: 1367484-1367502, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggagcccacccc	Protospacer
*********.******.**

40. spacer 2.2|952878|19|NC_016928|PILER-CR matches to position: 1706269-1706287, mismatch: 2, identity: 0.895

ctgtgttggggcccactcc	CRISPR spacer
ctgtgttggggccccatcc	Protospacer
**************  ***

41. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to position: 887719-887747, mismatch: 2, identity: 0.931

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacgataatg	Protospacer
************.*********.******

42. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to position: 1151653-1151681, mismatch: 2, identity: 0.931

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
agctggcgaaaagtcagcttacaataatg	Protospacer
*****.******.****************

43. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to position: 1686514-1686542, mismatch: 2, identity: 0.931

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
agctggcgaaaagtcagcttacaataatg	Protospacer
*****.******.****************

44. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to position: 821853-821881, mismatch: 2, identity: 0.931

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacgataatg	Protospacer
************.*********.******

45. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to position: 1984996-1985024, mismatch: 2, identity: 0.931

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
agctgacgaaaagtcagcttacgataatg	Protospacer
************.*********.******

46. spacer 4.3|1155673|39|NC_016928|PILER-CR matches to position: 183886-183924, mismatch: 2, identity: 0.949

agctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
*******.*******************.***********

47. spacer 4.3|1155673|39|NC_016928|PILER-CR matches to position: 622549-622587, mismatch: 2, identity: 0.949

agctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
*******.*******************.***********

48. spacer 4.3|1155673|39|NC_016928|PILER-CR matches to position: 622605-622643, mismatch: 2, identity: 0.949

agctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
*******.*******************.***********

49. spacer 4.3|1155673|39|NC_016928|PILER-CR matches to position: 785058-785096, mismatch: 2, identity: 0.949

agctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
*******.*******************.***********

50. spacer 4.3|1155673|39|NC_016928|PILER-CR matches to position: 830895-830933, mismatch: 2, identity: 0.949

agctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
*******.*******************.***********

51. spacer 4.3|1155673|39|NC_016928|PILER-CR matches to position: 1155787-1155825, mismatch: 2, identity: 0.949

agctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
*******.*******************.***********

52. spacer 4.3|1155673|39|NC_016928|PILER-CR matches to position: 2292437-2292475, mismatch: 2, identity: 0.949

agctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
agctgacagaaagtcagcttacaataatgtgcaagttgg	Protospacer
*****.*********************.***********

53. spacer 4.3|1155673|39|NC_016928|PILER-CR matches to position: 2326760-2326798, mismatch: 2, identity: 0.949

agctggcagaaagtcagcttacaataacgtgcaagttgg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagttgg	Protospacer
*******.*******************.***********

54. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 821909-821937, mismatch: 2, identity: 0.931

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggattcccaatttctacacacaa	Protospacer
************************ .***

55. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 831076-831104, mismatch: 2, identity: 0.931

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggattcccaatttctaccgacaa	Protospacer
*********************** *.***

56. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 1670937-1670965, mismatch: 2, identity: 0.931

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggatttccaatttctacagacaa	Protospacer
***********.*************.***

57. spacer 4.4|1155739|29|NC_016928|PILER-CR matches to position: 789515-789543, mismatch: 2, identity: 0.931

gaaattggattcccaatttctacaggcaa	CRISPR spacer
gaaattggatttccaatttctacagacaa	Protospacer
***********.*************.***

58. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 2130669-2130694, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctgtcttggggccccg	Protospacer
************.* ***********

59. spacer 11.1|2788793|26|NC_016928|CRISPRCasFinder matches to position: 2131007-2131032, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttttgtgttggggccccg	Protospacer
**********.*.*************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 LN846932 Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome 10622-10650 7 0.759
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 MT670422 Pseudomonas phage phiPsa397, complete genome 92793-92821 7 0.759
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 NC_023601 Pseudomonas phage phiPsa374, complete genome 91745-91773 7 0.759
NC_016928_4 4.1|1155561|29|NC_016928|PILER-CR 1155561-1155589 29 MT670421 Pseudomonas phage phiPsa381, complete genome 92567-92595 7 0.759
NC_016928_1 1.1|775552|30|NC_016928|CRISPRCasFinder 775552-775581 30 KC139649 Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds 9669-9698 9 0.7
NC_016928_1 1.1|775552|30|NC_016928|CRISPRCasFinder 775552-775581 30 KC139636 Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds 9669-9698 9 0.7
NC_016928_1 1.1|775552|30|NC_016928|CRISPRCasFinder 775552-775581 30 NC_025443 Salmonella phage 9NA, complete genome 7835-7864 9 0.7
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NZ_CP024776 Bacillus thuringiensis LM1212 plasmid pLM8, complete sequence 3826-3857 9 0.719
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NZ_CP009062 Borreliella afzelii K78 plasmid lp28-1, complete sequence 16532-16563 10 0.688
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NZ_CP018749 Borreliella garinii strain CIP 103362 isolate 20047 plasmid lp28-7 15178-15209 10 0.688
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NZ_CP028869 Borreliella garinii strain 20047 plasmid lp28-7, complete sequence 11910-11941 10 0.688
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NZ_CP028878 Borreliella bavariensis PBi plasmid lp28-7, complete sequence 4741-4772 10 0.688
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NZ_CP028879 Borreliella bavariensis PBi plasmid lp28-9, complete sequence 11876-11907 10 0.688
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NZ_CP017215 Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence 11994-12025 10 0.688
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NC_018987 Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence 12713-12744 15 0.531
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NC_017412 Borreliella burgdorferi JD1 plasmid JD1 lp28-7, complete sequence 17252-17283 15 0.531
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NC_017419 Borreliella burgdorferi N40 plasmid N40_lp28-2, complete sequence 17030-17061 15 0.531
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NC_017408 Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence 14812-14843 15 0.531
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NC_015920 Borreliella bissettii DN127 plasmid lp56, complete sequence 16601-16632 15 0.531
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NC_011779 Borreliella burgdorferi ZS7 plasmid ZS7_lp28-2, complete sequence 16934-16965 15 0.531
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NC_001852 Borreliella burgdorferi B31 plasmid lp28-2, complete sequence 16891-16922 15 0.531
NC_016928_7 7.1|1985054|32|NC_016928|CRISPRCasFinder 1985054-1985085 32 NZ_CP017219 Borreliella burgdorferi strain B331 plasmid B331_lp56, complete sequence 14876-14907 15 0.531

1. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 7, identity: 0.759

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
tgaagacgaaaaatcagattacgataaat	Protospacer
 *  ************* ****.****  

2. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to MT670422 (Pseudomonas phage phiPsa397, complete genome) position: , mismatch: 7, identity: 0.759

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
gcaggccgaaaaatcagcttccaataacg	Protospacer
.   * ************** ******.*

3. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to NC_023601 (Pseudomonas phage phiPsa374, complete genome) position: , mismatch: 7, identity: 0.759

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
gcaggccgaaaaatcagcttccaataacg	Protospacer
.   * ************** ******.*

4. spacer 4.1|1155561|29|NC_016928|PILER-CR matches to MT670421 (Pseudomonas phage phiPsa381, complete genome) position: , mismatch: 7, identity: 0.759

agctgacgaaaaatcagcttacaataatg	CRISPR spacer
gcaggccgaaaaatcagcttccaataacg	Protospacer
.   * ************** ******.*

5. spacer 1.1|775552|30|NC_016928|CRISPRCasFinder matches to KC139649 (Salmonella phage FSL SP-069 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, hypothetical proteins, deoxyuridine 5'-triphosphate nucleotidohydrolase, hypothetical proteins, NinH, head morphogenesis protein, hypothetical proteins, capsid related protein, hypothetical proteins, enolase-like protein, hypothetical proteins, tail fiber, hypothetical protein, putative endolysin, hypothetical proteins, and DNA polymerase genes, complete cds) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

6. spacer 1.1|775552|30|NC_016928|CRISPRCasFinder matches to KC139636 (Salmonella phage FSL SP-062 hypothetical proteins, RdgC exonuclease, hypothetical proteins, TerL, and hypothetical proteins genes, complete cds) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

7. spacer 1.1|775552|30|NC_016928|CRISPRCasFinder matches to NC_025443 (Salmonella phage 9NA, complete genome) position: , mismatch: 9, identity: 0.7

cagagaaattggaacgccaatttctacagg	CRISPR spacer
agctttaattggtacgccaatttctacatc	Protospacer
 .    ****** ***************  

8. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NZ_CP024776 (Bacillus thuringiensis LM1212 plasmid pLM8, complete sequence) position: , mismatch: 9, identity: 0.719

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
caaattaggatttcttttttcgaaatccttga	Protospacer
     ***.*****************.**. *

9. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NZ_CP009062 (Borreliella afzelii K78 plasmid lp28-1, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

10. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NZ_CP018749 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid lp28-7) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

11. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NZ_CP028869 (Borreliella garinii strain 20047 plasmid lp28-7, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

12. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NZ_CP028878 (Borreliella bavariensis PBi plasmid lp28-7, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

13. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NZ_CP028879 (Borreliella bavariensis PBi plasmid lp28-9, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggaaatagaatttgttttttagaaattcttgt	Protospacer
.   .******** ****** ********.  

14. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NZ_CP017215 (Borreliella burgdorferi strain B331 plasmid B331_lp28_6, complete sequence) position: , mismatch: 10, identity: 0.688

acctgtagaatttcttttttcgaaattctcta	CRISPR spacer
ggcaacagaatttgttttttagaaattcttgt	Protospacer
. * ..******* ****** ********.  

15. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NC_018987 (Borrelia burgdorferi 297 plasmid 297_lp28-6, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

16. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NC_017412 (Borreliella burgdorferi JD1 plasmid JD1 lp28-7, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

17. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NC_017419 (Borreliella burgdorferi N40 plasmid N40_lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

18. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NC_017408 (Borreliella burgdorferi JD1 plasmid JD1 lp28-6, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

19. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NC_015920 (Borreliella bissettii DN127 plasmid lp56, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

20. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NC_011779 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

21. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NC_001852 (Borreliella burgdorferi B31 plasmid lp28-2, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

22. spacer 7.1|1985054|32|NC_016928|CRISPRCasFinder matches to NZ_CP017219 (Borreliella burgdorferi strain B331 plasmid B331_lp56, complete sequence) position: , mismatch: 15, identity: 0.531

acctgtagaatttcttttttcgaaattctcta---	CRISPR spacer
---acaagaatttctaaaaaacaaattctgttgcc	Protospacer
      *********       ******* *    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 753874 : 761694 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 773675 : 788185 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 868819 : 890320 33 Staphylococcus_phage(77.78%) coat,terminase,integrase attL 867126:867147|attR 887788:887809
DBSCAN-SWA_4 978592 : 1022310 39 Streptococcus_phage(33.33%) transposase,tRNA,protease,holin,bacteriocin NA
DBSCAN-SWA_5 1056524 : 1064997 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 1322942 : 1330446 14 Staphylococcus_phage(87.5%) capsid NA
DBSCAN-SWA_7 1504744 : 1586727 106 Staphylococcus_phage(83.75%) terminase,portal,holin,protease,head,capsid,tail,tRNA,integrase attL 1564562:1564576|attR 1582544:1582558
DBSCAN-SWA_8 1642555 : 1650867 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_9 1721511 : 1730554 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_10 1856531 : 1902458 43 Staphylococcus_phage(94.29%) tRNA,protease NA
DBSCAN-SWA_11 1908012 : 1916326 9 Staphylococcus_phage(77.78%) NA NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_016928.2|WP_000384172.1|1881941_1882166_-|hypothetical-protein 1881941_1882166_- 74 aa aa NA NA NA 1856531-1902458 yes