CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015710	Simkania negevensis Z plasmid pSn, complete sequence	0 crisprs	RT,PD-DExK	0	0	1	0
NC_015713	Simkania negevensis Z chromosome gsn.131, complete sequence	0 crisprs	DEDDh,cas3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19113 : 73259

Salmonella_phage(22.22%)

transposase,integrase

attL 18055:18070|attR 30705:30720

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
18055:18070	attL	NA	NA	NA	NA
WP_148258906.1\|19113_19869_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_041418586.1\|19947_20487_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	3.7e-23	33.2
WP_013935002.1\|20796_21408_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_158307177.1\|21565_22249_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_041418590.1\|22211_22559_+	hypothetical protein	NA	NA	NA	NA
WP_013943592.1\|23670_24027_+\|transposase	transposase	NA	NA	NA	NA
WP_079891495.1\|23977_24484_+\|transposase	transposase	NA	NA	NA	NA
WP_148258890.1\|24588_24795_+	hypothetical protein	NA	NA	NA	NA
WP_013935007.1\|24903_27954_+	hypothetical protein	NA	NA	NA	NA
WP_013935010.1\|28454_28769_-	hypothetical protein	NA	NA	NA	NA
WP_013935012.1\|29354_29573_-	hypothetical protein	NA	NA	NA	NA
WP_013935013.1\|29791_30376_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.4e-41	50.8
WP_041418592.1\|30732_31551_+	hypothetical protein	NA	NA	NA	NA
30705:30720	attR	NA	NA	NA	NA
WP_013935016.1\|31568_32153_+	hypothetical protein	NA	NA	NA	NA
WP_013935017.1\|32374_33859_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.0e-128	49.8
WP_013935018.1\|34282_34543_-	hypothetical protein	NA	NA	NA	NA
WP_013935019.1\|34539_35022_-	disulfide bond formation protein B	NA	NA	NA	NA
WP_013935020.1\|35027_35483_-	conjugal transfer protein TraD	NA	NA	NA	NA
WP_013935021.1\|35776_40561_+	AAA family ATPase	A0A0E3M0K5	Verrucomicrobia_phage	1.8e-20	28.7
WP_013935022.1\|40572_40737_+	hypothetical protein	NA	NA	NA	NA
WP_013935023.1\|41501_41759_+	hypothetical protein	NA	NA	NA	NA
WP_013935024.1\|41782_42061_+	hypothetical protein	NA	NA	NA	NA
WP_148258907.1\|42509_42992_+	hypothetical protein	NA	NA	NA	NA
WP_013935027.1\|43295_44813_+	hypothetical protein	NA	NA	NA	NA
WP_013935028.1\|44997_46608_+	AAA family ATPase	NA	NA	NA	NA
WP_013935029.1\|46803_47208_+	hypothetical protein	NA	NA	NA	NA
WP_013935030.1\|47467_50164_+	cation-translocating P-type ATPase	M1HM40	Paramecium_bursaria_Chlorella_virus	1.3e-65	29.7
WP_013935031.1\|50160_51417_+	TolC family protein	NA	NA	NA	NA
WP_013935032.1\|51413_52556_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_013935033.1\|52559_55715_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_053225317.1\|55717_57412_+	alpha-glucan family phosphorylase	NA	NA	NA	NA
WP_148258893.1\|57845_59966_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	5.1e-52	31.4
WP_158307178.1\|59973_60384_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_013935038.1\|60398_60809_-	hypothetical protein	NA	NA	NA	NA
WP_013935039.1\|60972_61803_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_013935040.1\|61841_62378_-	DUF2231 domain-containing protein	NA	NA	NA	NA
WP_013935041.1\|62364_62775_-	hypothetical protein	NA	NA	NA	NA
WP_158307179.1\|63109_64450_+	TolC family protein	NA	NA	NA	NA
WP_013935044.1\|64442_65741_+	copper oxidase	NA	NA	NA	NA
WP_013935045.1\|65784_66369_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	3.2e-41	51.1
WP_013935046.1\|66524_69500_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	9.9e-78	25.3
WP_013935047.1\|69621_69774_+	hypothetical protein	NA	NA	NA	NA
WP_148258895.1\|69793_72397_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	4.6e-87	27.1
WP_079891495.1\|72445_72952_-\|transposase	transposase	NA	NA	NA	NA
WP_013943592.1\|72902_73259_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_015713

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

153912 : 198762

Synechococcus_phage(20.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079891495.1\|153912_154419_-\|transposase	transposase	NA	NA	NA	NA
WP_013943592.1\|154369_154726_-\|transposase	transposase	NA	NA	NA	NA
WP_013942485.1\|154873_155572_-	hypothetical protein	NA	NA	NA	NA
WP_013942487.1\|155941_157294_+	UDP-glucose/GDP-mannose dehydrogenase family protein	E3SLH6	Synechococcus_phage	1.6e-43	30.8
WP_013942488.1\|157306_158305_+	NAD-dependent epimerase/dehydratase family protein	A0A218MN53	uncultured_virus	3.3e-70	42.4
WP_013942489.1\|158319_159174_+	class I SAM-dependent methyltransferase	A0A222YX41	Synechococcus_phage	2.0e-63	45.4
WP_013942490.1\|159174_160383_+	hypothetical protein	NA	NA	NA	NA
WP_013942491.1\|160397_161957_+	hypothetical protein	NA	NA	NA	NA
WP_013942492.1\|161979_163401_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.9e-40	30.3
WP_013942493.1\|163412_164114_-	hypothetical protein	NA	NA	NA	NA
WP_013942494.1\|164173_164956_-	hypothetical protein	NA	NA	NA	NA
WP_013942495.1\|165017_165734_-	hypothetical protein	NA	NA	NA	NA
WP_013942496.1\|165726_166167_-	hypothetical protein	NA	NA	NA	NA
WP_013942497.1\|166163_167129_-	diguanylate cyclase	NA	NA	NA	NA
WP_013942498.1\|167151_168969_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_079891504.1\|168992_169082_-	AURKAIP1/COX24 domain-containing protein	NA	NA	NA	NA
WP_065757291.1\|169217_170009_+	DUF4396 domain-containing protein	NA	NA	NA	NA
WP_013942501.1\|170005_170290_-	hypothetical protein	NA	NA	NA	NA
WP_013942503.1\|170505_170898_-	hypothetical protein	NA	NA	NA	NA
WP_013942505.1\|171160_171415_-	hypothetical protein	NA	NA	NA	NA
WP_013942506.1\|171423_171693_-	hypothetical protein	NA	NA	NA	NA
WP_013942508.1\|171771_173226_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.1e-87	39.9
WP_148258921.1\|173489_174299_+	hypothetical protein	NA	NA	NA	NA
WP_013942510.1\|174516_177264_+	hypothetical protein	NA	NA	NA	NA
WP_013942511.1\|177260_178082_-	hypothetical protein	NA	NA	NA	NA
WP_053225322.1\|178111_178921_-	NUDIX hydrolase	NA	NA	NA	NA
WP_013942513.1\|178917_180651_-	M3 family oligoendopeptidase	NA	NA	NA	NA
WP_013942514.1\|180717_182433_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	6.1e-56	30.2
WP_013942515.1\|182407_183490_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_013942516.1\|183486_185970_+	HAMP domain-containing protein	A0A2H4N7Z5	Lake_Baikal_phage	1.8e-24	31.3
WP_173361971.1\|185969_186347_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.3e-08	35.3
WP_013942519.1\|186639_186936_+	DUF190 domain-containing protein	NA	NA	NA	NA
WP_013942520.1\|186997_187813_+	hypothetical protein	NA	NA	NA	NA
WP_013942521.1\|188037_188385_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158307189.1\|188381_188537_+	hypothetical protein	NA	NA	NA	NA
WP_013942522.1\|188634_189888_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	1.8e-28	33.8
WP_013942523.1\|189857_190784_-	hypothetical protein	NA	NA	NA	NA
WP_013942524.1\|190780_191344_-	type II secretion system protein	NA	NA	NA	NA
WP_013944429.1\|191631_192516_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.1e-43	35.5
WP_013942526.1\|192809_193106_+\|transposase	transposase	NA	NA	NA	NA
WP_013942527.1\|193217_193445_+	hypothetical protein	NA	NA	NA	NA
WP_013942528.1\|193599_197220_+	hypothetical protein	NA	NA	NA	NA
WP_013942529.1\|197367_197526_-	hypothetical protein	NA	NA	NA	NA
WP_013942530.1\|197731_198043_-	hypothetical protein	NA	NA	NA	NA
WP_013942531.1\|198107_198482_+\|transposase	transposase	NA	NA	NA	NA
WP_158307190.1\|198495_198762_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015710

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_015713

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection