CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016795	Brucella abortus A13334 chromosome 1, complete sequence	0 crisprs	csa3,WYL	0	0	2	0
NC_016777	Brucella abortus A13334 chromosome 2, complete sequence	1 crisprs	csa3,cas3,DEDDh	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1530311 : 1542239

uncultured_Mediterranean_phage(90.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002969969.1\|1530311_1532639_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.2e-51	43.5
WP_002964021.1\|1532757_1533099_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.1e-12	40.2
WP_002964020.1\|1533259_1534126_+	ATP-binding protein	NA	NA	NA	NA
WP_002964019.1\|1534174_1535473_-	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	1.0e-18	41.1
WP_002964018.1\|1535521_1535707_-	hypothetical protein	NA	NA	NA	NA
WP_002964017.1\|1535851_1536520_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.2e-13	37.8
WP_002966786.1\|1536516_1537284_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-39	40.2
WP_002964015.1\|1537432_1538716_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-104	47.2
WP_002964014.1\|1538792_1539617_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.8e-44	41.1
WP_002969412.1\|1539613_1540195_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_002964012.1\|1540305_1540524_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.5e-07	65.1
WP_002964011.1\|1540669_1541395_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-43	45.7
WP_002968731.1\|1541387_1542239_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-31	33.5

DBSCAN-SWA_2

1766177 : 1872337

101

Hokovirus(10.0%)

protease,holin,head,transposase,integrase,tail,capsid,portal

attL 1761827:1761843|attR 1848117:1848133

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1761827:1761843	attL	NA	NA	NA	NA
WP_002967515.1\|1766177_1767104_+\|integrase	site-specific integrase	A0A076YL28	Mesorhizobium_phage	2.9e-28	36.3
WP_002963782.1\|1767466_1768600_+	pyridoxal phosphate-dependent aminotransferase	A0A1X7QHI1	Faustovirus	9.1e-16	23.9
WP_002963781.1\|1768617_1768992_+	DUF423 domain-containing protein	NA	NA	NA	NA
WP_002963780.1\|1769036_1769687_-	hypothetical protein	NA	NA	NA	NA
WP_002963779.1\|1770343_1771114_+	YitT family protein	NA	NA	NA	NA
WP_002963778.1\|1771173_1771431_-	hypothetical protein	NA	NA	NA	NA
WP_002969438.1\|1771700_1771934_+	hypothetical protein	NA	NA	NA	NA
WP_002963776.1\|1771930_1772278_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_002963775.1\|1772336_1773047_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_002971518.1\|1773241_1773409_+	hypothetical protein	NA	NA	NA	NA
WP_002966730.1\|1773405_1773573_+	hypothetical protein	NA	NA	NA	NA
WP_002963772.1\|1773613_1775116_+	AMP nucleosidase	NA	NA	NA	NA
WP_002969439.1\|1775284_1776253_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_002963770.1\|1776368_1778060_-	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_002963769.1\|1778448_1779321_+	uracil-DNA glycosylase	NA	NA	NA	NA
WP_002970986.1\|1779482_1780739_+	MFS transporter	NA	NA	NA	NA
WP_002963767.1\|1780743_1781703_-	DMT family transporter	NA	NA	NA	NA
WP_002968720.1\|1781928_1784580_+	aminopeptidase N	NA	NA	NA	NA
WP_002969440.1\|1784970_1787322_+	PAS-domain containing protein	A0A1V0SGX0	Hokovirus	6.3e-27	34.8
WP_002966727.1\|1787592_1789704_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_002963763.1\|1789748_1792700_-	bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA	NA	NA	NA
WP_002966726.1\|1792822_1794229_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_002969442.1\|1794225_1794933_-	response regulator transcription factor	NA	NA	NA	NA
WP_002963760.1\|1795026_1796568_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	1.7e-28	29.8
WP_002963759.1\|1796709_1797186_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_002963758.1\|1797182_1799174_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_002963757.1\|1799193_1799691_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_002969443.1\|1799687_1800827_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_002971524.1\|1800927_1801380_-	hypothetical protein	NA	NA	NA	NA
WP_002969444.1\|1801473_1802784_-	hypothetical protein	NA	NA	NA	NA
WP_002963753.1\|1802858_1803548_-	response regulator transcription factor	NA	NA	NA	NA
WP_002971526.1\|1803626_1803923_-	hypothetical protein	NA	NA	NA	NA
WP_002969445.1\|1804084_1804291_-	hypothetical protein	NA	NA	NA	NA
WP_002963749.1\|1808222_1808645_-	C40 family peptidase	NA	NA	NA	NA
WP_002963747.1\|1809512_1810145_-	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	2.9e-48	47.6
WP_002970984.1\|1810147_1810693_-\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	2.8e-07	46.4
WP_002963745.1\|1810697_1810868_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_002963744.1\|1810911_1811253_-	gene transfer agent family protein	NA	NA	NA	NA
WP_002963743.1\|1811249_1811663_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_006072374.1\|1811703_1812111_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_002963741.1\|1812233_1812572_-\|head	phage head closure protein	NA	NA	NA	NA
WP_002963740.1\|1812568_1813135_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_002966724.1\|1813299_1814574_-\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	2.8e-82	43.6
WP_002963738.1\|1814595_1815264_-\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	1.7e-30	41.1
WP_002963737.1\|1815250_1815628_-	hypothetical protein	NA	NA	NA	NA
WP_002963736.1\|1815624_1816818_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	7.0e-67	40.0
WP_002970982.1\|1816849_1818097_-	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	4.9e-71	40.4
WP_002963734.1\|1818035_1818548_-	hypothetical protein	NA	NA	NA	NA
WP_002969866.1\|1818887_1821062_+	penicillin-binding protein 1A	NA	NA	NA	NA
WP_002963732.1\|1821068_1821680_+	DUF1214 domain-containing protein	NA	NA	NA	NA
WP_002963731.1\|1821672_1822215_+	hypothetical protein	NA	NA	NA	NA
WP_002969865.1\|1822412_1823489_+	DUF2336 domain-containing protein	NA	NA	NA	NA
WP_002963729.1\|1823499_1823847_-	DUF1491 family protein	NA	NA	NA	NA
WP_002971535.1\|1823860_1824829_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_002969448.1\|1824803_1826633_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	4.7e-22	28.9
WP_002963726.1\|1826923_1827373_+	hypothetical protein	NA	NA	NA	NA
WP_002963725.1\|1827452_1827878_+	SufE family protein	NA	NA	NA	NA
WP_002966720.1\|1827918_1829235_-	amidase	NA	NA	NA	NA
WP_002969449.1\|1829345_1830140_-	hypothetical protein	NA	NA	NA	NA
WP_002966719.1\|1830136_1830592_-	hypothetical protein	NA	NA	NA	NA
WP_002969861.1\|1830772_1831084_+	hypothetical protein	NA	NA	NA	NA
WP_002963720.1\|1831291_1831720_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	1.0e-20	47.6
WP_002963718.1\|1832292_1834401_+	S9 family peptidase	NA	NA	NA	NA
WP_002963717.1\|1834518_1834854_+	hypothetical protein	NA	NA	NA	NA
WP_002963716.1\|1835025_1835625_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.2e-38	42.6
WP_002963715.1\|1835847_1836501_+	haloacid dehalogenase type II	NA	NA	NA	NA
WP_002971536.1\|1836502_1836745_-	hypothetical protein	NA	NA	NA	NA
WP_002963714.1\|1836803_1837520_+	L,D-transpeptidase	NA	NA	NA	NA
WP_002963713.1\|1837709_1839221_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	1.4e-83	44.3
WP_002963712.1\|1839556_1839919_+	hypothetical protein	NA	NA	NA	NA
WP_002969450.1\|1841250_1841571_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_002969451.1\|1841567_1841930_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_002963709.1\|1842085_1843078_+	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_002963708.1\|1843138_1843369_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_002963707.1\|1843365_1843755_+	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	3.5e-07	44.6
WP_002963706.1\|1843751_1844222_-	GreA/GreB family elongation factor	NA	NA	NA	NA
WP_002963705.1\|1844266_1845289_-	asparaginase	NA	NA	NA	NA
WP_002969060.1\|1845479_1846076_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_002966717.1\|1846078_1847761_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	7.9e-40	30.6
WP_002963701.1\|1847912_1849376_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
1848117:1848133	attR	NA	NA	NA	NA
WP_002969452.1\|1849913_1850483_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_014315809.1\|1850464_1850908_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002963699.1\|1851169_1852201_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002966716.1\|1852233_1853685_+	xylulokinase	NA	NA	NA	NA
WP_002966715.1\|1853731_1855039_+	xylose isomerase	NA	NA	NA	NA
WP_002969454.1\|1855080_1856178_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_002963695.1\|1856185_1857238_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_002969455.1\|1857295_1858258_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_002963693.1\|1858336_1859338_-	ABC transporter permease	NA	NA	NA	NA
WP_002969848.1\|1859358_1860927_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-14	25.3
WP_109790518.1\|1861033_1861237_-	hypothetical protein	NA	NA	NA	NA
WP_002969456.1\|1861585_1862695_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_002963690.1\|1862777_1863950_-	AGE family epimerase/isomerase	NA	NA	NA	NA
WP_002963689.1\|1863982_1865407_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	9.0e-53	30.8
WP_002963688.1\|1865477_1866833_-	phosphomannomutase	NA	NA	NA	NA
WP_002975117.1\|1867443_1867761_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_094866392.1\|1867657_1868421_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-21	40.8
WP_126358176.1\|1868583_1868946_+	hypothetical protein	NA	NA	NA	NA
WP_077281774.1\|1869180_1869333_+	hypothetical protein	NA	NA	NA	NA
WP_002968716.1\|1870090_1871209_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_181400738.1\|1871579_1872337_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	4.7e-16	41.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_016777

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_016777_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016777_1

332283-332383

Orphan

Consensus_repeat	Method
ATGGACTTCTTGGAAGTCCATGCCGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016777_1

>merge|NC_016777|1|332283-332383|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCCCCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTTATGGACTTCTTAGAAGTCCATGCCGCCC

>NC_016777|1|1|332283-332383|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCC	CCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTT
ATGGACTTCTTAGAAGTCCATGCCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016777.1\|WP_002972151.1\|331357_331612_-\|hypothetical-protein	unknown	unknown	unknown
NC_016777.1\|WP_002966390.1\|329816_331208_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NC_016777.1\|WP_002966386.1\|334095_334392_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NC_016777.1\|WP_002966382.1\|337141_340060_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NC_016777.1\|WP_002966392.1\|327788_329027_-\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NC_016777.1\|WP_002972147.1\|334872_335721_+\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NC_016777.1\|WP_002967189.1\|322873_323530_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NC_016777.1\|WP_002966377.1\|344221_344785_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NC_016777.1\|WP_002972153.1\|325893_327024_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413
NC_016777.1\|WP_002968826.1\|324376_325885_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NC_016777.1\|WP_002971287.1\|340251_340923_+\|hypothetical-protein	unknown	unknown	unknown
NC_016777.1\|WP_002966383.1\|335808_336798_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_016777.1\|WP_002966378.1\|342495_344241_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NC_016777.1\|WP_002969286.1\|344870_346415_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_016777.1\|WP_002968994.1\|320797_321625_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381357
NC_016777.1\|WP_002967192.1\|341267_341828_+\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NC_016777.1\|WP_002966396.1\|323648_324266_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_016777.1\|WP_002966393.1\|327020_327716_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237438
NC_016777.1\|WP_002966379.1\|341881_342355_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_016777.1\|WP_002966391.1\|329312_329714_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168

Protein	Function_ID	Function_description	E-value
NC_016777.1\|WP_002966390.1\|329816_331208_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NC_016777.1\|WP_002966386.1\|334095_334392_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.80408e-54
NC_016777.1\|WP_002966382.1\|337141_340060_+\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NC_016777.1\|WP_002966392.1\|327788_329027_-\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.18971e-166
NC_016777.1\|WP_002972147.1\|334872_335721_+\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.51221e-90
NC_016777.1\|WP_002967189.1\|322873_323530_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	3.88001e-109
NC_016777.1\|WP_002966377.1\|344221_344785_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.21532e-78
NC_016777.1\|WP_002972153.1\|325893_327024_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	2.67267e-157
NC_016777.1\|WP_002968826.1\|324376_325885_+\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	2.87411e-159
NC_016777.1\|WP_002966383.1\|335808_336798_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.77791e-157
NC_016777.1\|WP_002966378.1\|342495_344241_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	6.08227e-83
NC_016777.1\|WP_002969286.1\|344870_346415_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.11164e-117
NC_016777.1\|WP_002968994.1\|320797_321625_-\|aldo/keto-reductase	gnl\|CDD\|381357	cd19131, AKR_AKR5C2, Escherichia coli 2,5-diketo-D-gluconic acid reductase A (DkgA/YqhE) and similar proteins. Escherichia coli DkgA/YqhE is a founding member of aldo-keto reductase family 5 member C2 (AKR5C2). DkgA/YqhE (EC 1.1.1.274), also called 2,5-DKG reductase A, or 2,5-DKGR A, or 25DKGR-A, or AKR5C, catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG). It is also capable of stereoselective -keto ester reductions on ethyl acetoacetate and other 2-substituted derivatives.	3.08102e-178
NC_016777.1\|WP_002967192.1\|341267_341828_+\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	7.89145e-52
NC_016777.1\|WP_002966396.1\|323648_324266_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	9.51794e-45
NC_016777.1\|WP_002966393.1\|327020_327716_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	1.16784e-135
NC_016777.1\|WP_002966379.1\|341881_342355_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.96751e-65
NC_016777.1\|WP_002966391.1\|329312_329714_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.4232e-20

>NC_016777.1|WP_002972151.1|331357_331612_-|hypothetical-protein
MRKELPIETAPKDGRKITVIWIDDDDQRNESIAQYRTLEQLRAGGGQWDEADTGWWTFTDNKTQRKIEPTAWIRETDDDESQED
>NC_016777.1|WP_002966390.1|329816_331208_-|class-II-fumarate-hydratase
MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPVGFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ
>NC_016777.1|WP_002966391.1|329312_329714_-|DoxX-family-protein
MSSITPKANGAATLIIRVFLSVLFIIAGYNKLTALDGTADYFASIGLPMPIVTAVVVGLIEFVGGLAILFGFKTRIAAVIVGLFTLGATLVAHMDFAEGMNLLIAQKNLAIAGGLFLLFLHGAGSLSIDARRG
>NC_016777.1|WP_002966392.1|327788_329027_-|sugar-MFS-transporter
MATSIPTNNPLHTETSSQKNYGFALTSLTLLFFMWGFITCLNDILIPHLKNVFQLNYTQSMLIQFCFFGAYFIVSLPAGQLVKRISYKRGIVVGLIVAAIGCALFIPAASYRVYALFLGALFVLASGVTILQVAANPYVTILGKPETAASRLTLTQAFNSLGTTVAPVFGAVLILSAATDATVNAEADAVRFPYLLLALAFTVLAIIFAILKPPDVQEDEPALSDKKEGSAWQYRHLVLGAIGIFVYVGAEVSVGSFLVNFLSDPTVAGLSETDAAHHVAYFWGGAMVGRFIGSAAMRYIDDGKALAFNAFVAIILLFITVATTGHIAMWSVLAIGLFNSIMFPTIFSLALHGLGSHTSQGSGILCLAIVGGAIVPLIQGALADAIGIHLAFLMPIICYAYIAFYGLIGSKS
>NC_016777.1|WP_002966393.1|327020_327716_+|ATP-phosphoribosyltransferase
MSVTLALPSKGRLKEKTLAVLEKAGYKVVLPDDDRNYRARVEGEDDLDILFLSASEIARELGYGSVDLGVTGEDLVRETLAHADERVAIEAQLGFGHADVVVAVPEVWRDVTTMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLRANRLKVLEDGIILRSQACLVSARRSHTSRRVEEIAARIRAGLEI
>NC_016777.1|WP_002972153.1|325893_327024_+|ATP-phosphoribosyltransferase-regulatory-subunit
MVGSRTSPIFNALRVELNAREAELVEIPLIQPADPFLDMAGEDLRRRIFLTENENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQRRDGAAEFLQAGIEDLGAADEAASDARSLADALSCVKAIAPDAPLEIVLGDQSVFAGMLKALGLPQGWRKKLLRSFGDAHSMDLALAELTGTQRRDPLPESLAVLVAEGDEIGLARMLEAEMLEAGISPGAGRTPVEIARRLIEKEDLAATHFPAAALDLLRQFLAIRVSLDMAAVTLRAFAADNALDLGAVLQKFEARADAIAQAGIEMKDIIYDASFGRPLDYYTGLVYEIRDASNRQDGVLAGGGRYDRLLTMLGACEAIPGVGFSIWLDRLQALAGEKQ
>NC_016777.1|WP_002968826.1|324376_325885_+|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYDLYGFEPVETPLVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARYVAENFETLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADTLERLGIQRGDYAIRVNNRKVLDGVLDAIGLEGEGNAAKRLNVLRAIDKLDKFGPEGVRLLLGKGRLDESGDFTKGAQLPEAAIEKVLAFTAAGGADGAQTIANLQAVVAGNAKGEEGVQELADMQALFFAGGYEGRVKIDPSVVRGLEYYTGPVFEAELLFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLMTALKNLGKLDVSDTVGPVVVLVMDKDTQNLGRYQKMVSDLRKAGIRAEMYVGGSGMKAQMKYADRRAAPCVVIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWLESRPAQITVREDGLVDAVREILDAQARDRAEQSK
>NC_016777.1|WP_002966396.1|323648_324266_+|LysE-family-translocator
MDLMSLVAFAGILVVAAGTPGPKVGALVARVISRGHKGVFPFMFGLWLGDAVWLSLAVWGLSALAHTFQTAFLVLKYAGVAYLIYLSWKMWFAPVDEEADENTIPRQGEGKRLFLSALGVTLGNPKIMVFYLAILPTVVDITHVSLTGWVELLLVMFMVLAAVDTAWVVLAAQARKFLRSPRMMRLANRTSAGMMAGAAVAIAAR
>NC_016777.1|WP_002967189.1|322873_323530_+|DNA-3-methyladenine-glycosylase-I
MSDMAEARAGLVVGADGRTRCFWPGELPDYLAYHDNEWGVPVADDFRLFEKICLEGFQSGLSWLTILRKRENFRAAFDGFNFHRIATYDESDVERLLADKGIVRHRGKIVSVINNAGRAIELIEEKGSLAAYFWSFEPGAENRPAVVDYPTLVANPITATSTRISKDLKKRGWSFVGPTTVYAFMQAMGLVNDHIEGCHCRATIEKLRQNFKRPGKKL
>NC_016777.1|WP_002968994.1|320797_321625_-|aldo/keto-reductase
MTVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEEGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLGQGKLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLDMADGRIGPNPSVFSA
>NC_016777.1|WP_002966386.1|334095_334392_-|co-chaperone-GroES
MADIKFRPLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>NC_016777.1|WP_002972147.1|334872_335721_+|TIGR01459-family-HAD-type-hydrolase
MILPERLDDLTDRYDAIFCDVWGVVHNGETSFAPAIAALQRARAKGVTIILVTNSPRPHPGVVAQMSLLGVPEDAYDRVVTSGDVTRDLIAEGPRRIFHIGCERELAIYDGLDVELVEEFEAAGVVCTGLYDDEVETPEDYRELLQRLRARNLPFICANPDIMVERGPRLIWCAGALAREYGQLGGRTLIAGKPHRPIYEAALRAVESIRGGSVDKSRILGIGDGVLTDVKGAADFGLDVLYISGGVHAADYAVNGDLDMAKMEAFLEKHGHRPIASLHALV
>NC_016777.1|WP_002966383.1|335808_336798_+|bifunctional-riboflavin-kinase/FAD-synthetase
MKKSSFQRLTGTEGLPPALHDCVVAIGNFDGVHRGHQAVLERALELAERESRPAVVLTFEPHPRSFFKQDQPVDRLTDAAEKAEILRLMGFDAVMEQPFTAEFSQRSAEDFVQHILVEKLRASRVVTGYDFHFGKGRRGTPEFLCEAGKKAGFSVTLVDAFTDEGGMLVSSTRIRNLLSEGEVAEAAGLLGYRYRICGEVIHGKKLGRTLGFPTANMALAPQTSLKHGIYAVRFRLDDAMLYDGVASFGRRPTVDDEGAPLLETFLFDFSGDLYGKTAAVSFFGFLRGEVKFDGLDPLIDQMKQDEAQARALLADVRPISGLDRMLSFN
>NC_016777.1|WP_002966382.1|337141_340060_+|isoleucine--tRNA-ligase
MTDTTKIDYSKTLYLPQTEFPMRAGLPQREPLFVQRWEEMNLYKKLREQAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYNSNYVPGWDCHGLPIEWKIEEKYRAAGKNKDEVPINEFRKECREFASNWIKVQTEEFKRLAILGDFENPYTTMNFHAEARIAGELLKFAASGQLYRGSKPVMWSVVERTALAEAEVEYHDIESDMIWVKFPVAGEVATENDLSGSAVVIWTTTPWTIPGNRAVSYSSRIEYGLFEITEAENDFGPRPGERLVFADKLVEECCAKAKLQFKRLRSVSAEELGKIVLDHPLKGFGGGYEFVVPMLDGDHVTDDAGTGFVHTAPSHGREDFEAWMDNARQLEARGIDPNIPFPVGDDGFYTKDAPGFGPDREGGPARVIDDNGKKGDANKVVIEQLIAADKLFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKNLGDGTTLRSRALKAIDETRFVPAAGQTRLRSMIEGRPDWVLSRQRAWGVPICVFVDEEGNILQDDAVNKRIMDAFEKEGADAWFADGARERFLGARAGEGWTQVRDILDVWFDSGSTHTFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYNAVVTHGFTMDEHGKKMSKSLGNTVTPQDVIKESGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDEGENVAYADLPELERLMLHRLTELDELVRSGYDTFDFKRIARALVDFMNVELSAFYFDIRKDALYCDAPSSIRRKAALQTVREIFVRLTTWLAPMLPFTMEEAWLDRYPQSVSIHAEQFRPTPAEWRDDVLAEKWRKVRAVRRVVTGALELERADKRIGSSLEAAPVVYIADKSLSDSLEGLDFAEICITSGISVSDAAAPEGAFTLGDVKGVAVVPERAKGEKCARSWRYTTDVGADPEFPEVSARDAAALRELQALGKL
>NC_016777.1|WP_002971287.1|340251_340923_+|hypothetical-protein
MKIEGRVLVLMTALAGLSLSGCVSSPTYGTDKSAGAQLLDDVSNMASFGQGKKKERIDYKPRPDLVRPAPGDKGYLPAPQQSLASSSDPNWPESPEQRRKRVRDEITAHRDDPNYVSPVLQDAPVADNIRTALPRGNSRREDYASRTPTSDPAKVAALKAARAQQNQGSATTRRYLSEPPLAYRQPASTAAVGELGPDEAQKERERKKAASGSRGWRDYLPWN
>NC_016777.1|WP_002967192.1|341267_341828_+|cytochrome-b
MSSKTYIWDDRSGYGLVSRGFHWLMALLFLWQFASAILRVFAKDTPIYSFFWSAHFQLGFALLVLALLRGVWGLMNIHRRPHKDGAIGKLAVLGHLAIYVLMITIPSLALLRAYGSGRGFSFLGMPIFAKTDIQNAMLTAPANALHGPLGWALLAAIVGHVAMALVYHFALRDDTLRYMTGHGTPN
>NC_016777.1|WP_002966379.1|341881_342355_-|nucleoside-deaminase
MRKAASITKANSATPMDIALEEAHAAGERGEVPIGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEMLGSERLIDCDLYVTLEPCAMCAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQPTCHHAPEIYPGFCEADARKILKDFFREKR
>NC_016777.1|WP_002966378.1|342495_344241_+|pseudouridine-synthase
MMAQGDAVTLLKGLYQMTTEDDNKGGKPPHGRKGHSDRPGRPDWDSRPRREGGDRDKPRKFGSRGAPVEEETSERIAKRLARAGIASRREAETMIAAGRIAVNGKVLESPAVNVKRTDIITVDGKPLRQTERTRLWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLGDKLIEESGADFDAPVLNEFSNAAVQGRTRREMEEGELPQEGERRRAPREREWISSTGERRRGREEKTEKVEPRRRGNANVWMAPGARPKGEKEAAKPARVEHQQPHRSAKFSGDLQMRPRRFSEEERGGEESGERRYKRPEGRFEREGGRPDNREKYEKHEGAGKERRPGKRERAELRNAEGQTTERGKGGFEGRKPGKPGGPRSEGRFGGADRDTRSGPRGSGPRGAGDGPRRGHDGKPGGKPGGKPTGRPGGKPGTKPGGGGRSGGGGADRRR
>NC_016777.1|WP_002966377.1|344221_344785_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNILAHSFPDKVEGVRVLDLFAGTGALGLEALSRGARYATFVEESAEGRGILRQNIEALGLQGHTKILRRDACQLGIVGTMEPFDLVFADPPYGRRMGEKAFLSALQGGWLNPDALLVLEEDAQAALELDDRFAVREERNYGGTVIRLIELKAAS
>NC_016777.1|WP_002969286.1|344870_346415_+|insulinase-family-protein
MNTPHSGCLLLSTVLGFALALPLAGGAVRAEMQPAAPAETQPAPAAPAAPVAPAALPEIFRLDGVSNFTLPNGMQVVVIPDHRAPVVTQMVWYHVGAADEAPGVSGIAHFLEHLMFKGTKNHPAGEFSARIASIGGQENAFTSYDYTAYFQRVSPEALEMVMDFESDRMENLVLDEEAVKTEREVILEERRMRIDSNPGAMLMENTDAVLFYNHPYRKPVIGWQQEMEKLSLKNAIDFYNQYYTPNNATLVIAGDVTPERVRELAMKTWANVHKRAEVLLRERPQEPAKHAARVVTLHDERVSTPSFRISWLVPSYANEKRFANAKPGDAPALDLLSEILGGSQLSQLYQQLIVKQGIAAETGASYDGDALDDGTFSVYGVPRNGASLGDVEKAVAAQVDRIIRDGVTQAELDQARNRFLKAVIFARDSQTGMARIYGSALSVGQTVDDIQKWPDLIKSVTVDQIKDVARRYLVKDQAVTSYLLPPDTEAESARKKPNAPANDASASGAGGAIQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016795

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_016777

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection