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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_016610 Tannerella forsythia 92A2, complete sequence 3 crisprs csm3gr7,csx10gr5,csx19,PD-DExK,WYL,cas3,cas6,cas5,cas8b4,cas7b,cas4,cas10,csm2gr11,csm4gr5,csm5gr7,csx1,csx20,cas1,cas2,DEDDh,DinG 1 3 3 1

Results visualization

1. NC_016610
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016610_1 612054-612207 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016610_2 2133979-2134062 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016610_3 2508338-2513170 TypeIII I-A,II-B,III-A
72 spacers
cas2,cas1,csx20,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 NC_016610.1 2134359-2134388 2 0.933
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 NC_016610.1 2815433-2815462 2 0.933

1. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to position: 2134359-2134388, mismatch: 2, identity: 0.933

cattgacaattgacaattaacaattaattt	CRISPR spacer
cattgacaattaacaattaaccattaattt	Protospacer
***********.********* ********

2. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to position: 2815433-2815462, mismatch: 2, identity: 0.933

cattgacaattgacaattaacaattaattt	CRISPR spacer
cattgacaattaacaattgacaattaattt	Protospacer
***********.******.***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 AP017993 Planktothrix agardhii NIES-204 plasmid plasmid2 DNA, complete sequence 58738-58767 5 0.833
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 MN693267 Marine virus AFVG_25M289, complete genome 52308-52337 6 0.8
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 AP017993 Planktothrix agardhii NIES-204 plasmid plasmid2 DNA, complete sequence 58745-58774 7 0.767
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 NC_015907 Borreliella bissettii DN127 plasmid cp26, complete sequence 13591-13620 7 0.767
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 NC_019740 Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence 45922-45951 7 0.767
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 CP013001 Bacillus thuringiensis strain XL6 plasmid, complete sequence 317841-317870 8 0.733
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 MK448914 Streptococcus phage Javan348, complete genome 28505-28534 8 0.733
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 MK448917 Streptococcus phage Javan362, complete genome 36975-37004 8 0.733
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 MK448738 Streptococcus phage Javan355, complete genome 37036-37065 8 0.733
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 MN855636 Bacteriophage sp. isolate 140, complete genome 7142-7171 9 0.7
NC_016610_2 2.1|2134006|30|NC_016610|CRISPRCasFinder 2134006-2134035 30 MN855701 Bacteriophage sp. isolate 21, complete genome 7840-7869 9 0.7
NC_016610_3 3.84|2509105|37|NC_016610|CRISPRCasFinder,CRT 2509105-2509141 37 NC_025146 Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111 74230-74266 9 0.757
NC_016610_3 3.27|2510106|37|NC_016610|PILER-CR 2510106-2510142 37 NZ_CP043850 Micrococcus luteus strain NCCP 15687 plasmid unnamed, complete sequence 9146-9182 10 0.73

1. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to AP017993 (Planktothrix agardhii NIES-204 plasmid plasmid2 DNA, complete sequence) position: , mismatch: 5, identity: 0.833

cattgacaattgacaattaacaattaattt	CRISPR spacer
aattgacaattgacaattatcaattattaa	Protospacer
 ****************** ****** *  

2. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to MN693267 (Marine virus AFVG_25M289, complete genome) position: , mismatch: 6, identity: 0.8

cattgacaa--ttgacaattaacaattaattt	CRISPR spacer
--accacaattttgacaattaacaattatttt	Protospacer
   . ****  ***************** ***

3. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to AP017993 (Planktothrix agardhii NIES-204 plasmid plasmid2 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

cattgacaattgacaattaacaattaattt	CRISPR spacer
aattgataattgacaattgacaattatcaa	Protospacer
 *****.***********.******* .  

4. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to NC_015907 (Borreliella bissettii DN127 plasmid cp26, complete sequence) position: , mismatch: 7, identity: 0.767

cattgacaattgacaattaacaattaattt	CRISPR spacer
tttaaataatttacaattaaaaattaattt	Protospacer
. * .*.**** ******** *********

5. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to NC_019740 (Microcoleus sp. PCC 7113 plasmid pMIC7113.03, complete sequence) position: , mismatch: 7, identity: 0.767

cattgacaattgacaattaacaattaattt	CRISPR spacer
aatcaacaattaacaattaacaatcaatac	Protospacer
 **..******.************.*** .

6. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

cattgacaattgacaattaacaattaattt	CRISPR spacer
aacaatgaatcgacaatttacaattaattt	Protospacer
 *. .  ***.******* ***********

7. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to MK448914 (Streptococcus phage Javan348, complete genome) position: , mismatch: 8, identity: 0.733

cattgacaattgacaattaacaattaattt	CRISPR spacer
aaatgacaaatggcaattaacaattatgaa	Protospacer
 * ****** **.*************    

8. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to MK448917 (Streptococcus phage Javan362, complete genome) position: , mismatch: 8, identity: 0.733

cattgacaattgacaattaacaattaattt	CRISPR spacer
aaatgacaaatggcaattaacaattatgaa	Protospacer
 * ****** **.*************    

9. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to MK448738 (Streptococcus phage Javan355, complete genome) position: , mismatch: 8, identity: 0.733

cattgacaattgacaattaacaattaattt	CRISPR spacer
aaatgacaaatggcaattaacaattatgaa	Protospacer
 * ****** **.*************    

10. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to MN855636 (Bacteriophage sp. isolate 140, complete genome) position: , mismatch: 9, identity: 0.7

cattgacaattgacaattaacaattaattt	CRISPR spacer
cattgacaattgacaataaaaaagggcaag	Protospacer
***************** ** **  .    

11. spacer 2.1|2134006|30|NC_016610|CRISPRCasFinder matches to MN855701 (Bacteriophage sp. isolate 21, complete genome) position: , mismatch: 9, identity: 0.7

cattgacaattgacaattaacaattaattt	CRISPR spacer
cattgacaattgacaataaaaaagggcaag	Protospacer
***************** ** **  .    

12. spacer 3.84|2509105|37|NC_016610|CRISPRCasFinder,CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 9, identity: 0.757

aaaagatttgctatattgtgaaaaatttaaaaaaaag	CRISPR spacer
aatcgtacttctttattgtgaaaaatttcaaaaaaac	Protospacer
**  *  .* ** *************** ******* 

13. spacer 3.27|2510106|37|NC_016610|PILER-CR matches to NZ_CP043850 (Micrococcus luteus strain NCCP 15687 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.73

cgccaccaccgaccctgcacgggcggtttggctcgcg	CRISPR spacer
cgccaccaccgaccctgcaccgtcggagacgacggca	Protospacer
******************** * ***    * . **.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1201990 : 1271312 58 Tetraselmis_virus(50.0%) tRNA,tail,protease,transposase NA
DBSCAN-SWA_2 1578807 : 1646533 57 Tupanvirus(22.22%) tRNA,tail,protease,transposase NA
DBSCAN-SWA_3 3223166 : 3281999 49 unidentified_phage(25.0%) integrase,transposase attL 3221420:3221434|attR 3282096:3282110
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_016610.1|WP_007366492.1|1360999_1361422_-|PcfK-like-family-protein 1360999_1361422_- 140 aa aa 40 NA NA No NA