CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011040	Pseudoalteromonas spongiae UST010723-006 chromosome II, complete sequence	1 crisprs	WYL,DEDDh,cas3,DinG,csa3	0	0	0	0
NZ_CP011039	Pseudoalteromonas spongiae UST010723-006 chromosome I, complete sequence	1 crisprs	cas3,DEDDh,DinG,cas6f,cas7f,cas5f,csa3	0	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011040_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011040_1

1356868-1356981

Orphan

Consensus_repeat	Method
TCTTGCTTTGTGCAACAGCTCGGCTAACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011040_1

>merge|NZ_CP011040|1|1356868-1356981|CRISPRCasFinder
TCTTGCTTTGTGCAACAGCTCGGCTAACTGTGGAGTAATGCACACCAAAATAATTAGCTATTTCTAAAAAGCGAAGGGGTCAGATCTTGCATTGTGCAACAGCTCGGCTAACTG

>NZ_CP011040|1|1|1356868-1356981|CRISPRCasFinder
TCTTGCTTTGTGCAACAGCTCGGCTAACTG	TGGAGTAATGCACACCAAAATAATTAGCTATTTCTAAAAAGCGAAGGGGTCAGA
TCTTGCATTGTGCAACAGCTCGGCTAACTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011040.1\|WP_010558697.1\|1351009_1351705_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP011040.1\|WP_010558685.1\|1366534_1367821_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011040.1\|WP_010558682.1\|1368873_1371765_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NZ_CP011040.1\|WP_010558689.1\|1361006_1361903_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182601
NZ_CP011040.1\|WP_040641849.1\|1365180_1366026_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP011040.1\|WP_010558692.1\|1355546_1356323_+\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
NZ_CP011040.1\|WP_010558700.1\|1347113_1348517_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011040.1\|WP_010558684.1\|1367821_1368223_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011040.1\|WP_010558687.1\|1362585_1364439_-\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|223444
NZ_CP011040.1\|WP_010558698.1\|1349621_1351013_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP011040.1\|WP_010558681.1\|1372007_1372397_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP011040.1\|WP_010558694.1\|1354093_1355014_+\|DUF2199-domain-containing-protein	unknown	unknown	gnl\|CDD\|378329
NZ_CP011040.1\|WP_010558693.1\|1355014_1355521_+\|metal-dependent-hydrolase	unknown	unknown	unknown
NZ_CP011040.1\|WP_010558690.1\|1360003_1360885_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|227259
NZ_CP011040.1\|WP_040641880.1\|1353597_1354101_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011040.1\|WP_010558683.1\|1368319_1368805_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011040.1\|WP_148665327.1\|1352090_1353110_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378537
NZ_CP011040.1\|WP_010558701.1\|1346505_1347003_+\|type-III-secretion-system-chaperone	unknown	unknown	gnl\|CDD\|341100
NZ_CP011040.1\|WP_010558691.1\|1357137_1359687_+\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|380193
NZ_CP011040.1\|WP_010558699.1\|1348676_1349555_-\|aspartyl-protease-family-protein	unknown	unknown	gnl\|CDD\|133150

Protein	Function_ID	Function_description	E-value
NZ_CP011040.1\|WP_148665327.1\|1352090_1353110_+\|hypothetical-protein	gnl\|CDD\|378537	pfam11008, DUF2846, Protein of unknown function (DUF2846). Some members in this family of proteins with unknown function are annotated as lipoproteins however this cannot be confirmed.	0.000800672
NZ_CP011040.1\|WP_040641849.1\|1365180_1366026_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.17398e-17
NZ_CP011040.1\|WP_010558697.1\|1351009_1351705_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.18532e-73
NZ_CP011040.1\|WP_010558698.1\|1349621_1351013_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.4209e-55
NZ_CP011040.1\|WP_010558692.1\|1355546_1356323_+\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	9.13823e-32
NZ_CP011040.1\|WP_010558687.1\|1362585_1364439_-\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|223444	COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism].	1.19089e-102
NZ_CP011040.1\|WP_010558690.1\|1360003_1360885_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|227259	COG4922, COG4922, Uncharacterized protein conserved in bacteria [Function unknown].	1.50541e-14
NZ_CP011040.1\|WP_010558681.1\|1372007_1372397_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.96094e-74
NZ_CP011040.1\|WP_010558694.1\|1354093_1355014_+\|DUF2199-domain-containing-protein	gnl\|CDD\|378329	pfam09965, DUF2199, Uncharacterized protein conserved in bacteria (DUF2199). This domain, found in various hypothetical bacterial proteins, has no known function.	2.58426e-25
NZ_CP011040.1\|WP_010558682.1\|1368873_1371765_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NZ_CP011040.1\|WP_010558689.1\|1361006_1361903_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182601	PRK10632, PRK10632, HTH-type transcriptional activator AaeR.	1.52131e-58
NZ_CP011040.1\|WP_010558701.1\|1346505_1347003_+\|type-III-secretion-system-chaperone	gnl\|CDD\|341100	cd16364, T3SC_I_like, class I type III secretion system (T3SS) chaperones and similar proteins. This family contains class I type III secretion system (T3SS) chaperones mainly found in Gram-negative bacteria such as Pseudomonas, Yersinia, Salmonella, Escherichia and Erwinia, among others. A wide variety of these bacterial pathogens and symbionts require a T3SS to inject eukaryotic host cells with effector proteins important for suppressing host defenses and establishing infection. Many of these effector proteins interact with specific type III secretion chaperones prior to secretion. These T3SS chaperones have been classified as class I type III secretion chaperones (T3SC), which are small structurally conserved dimers that interact specifically with T3SS effector proteins. Class I T3SC consists of two subclasses: IA and IB. Class IA T3SC binds a single effector, whereas class IB T3SC binds to several effectors. Class IA and Class IB T3SCs typically exhibit little sequence similarities, but share a common overall heart-shaped structure fold (alpha-beta-beta-beta-alpha-beta-beta-alpha) and features, such as a small size, an acidic pI and an amphipathic C-terminal alpha-helix. Chaperone protein CesT serves a chaperone function for the enteropathogenic Escherichia coli (EPEC) translocated intimin receptor (Tir) protein, which confers upon EPEC the ability to alter host cell morphology following intimate bacterial attachment. In Pseudomonas aeruginosa, chaperone ExsC binds small secreted protein ExsE as well as the non-secreted anti-activator protein ExsD; it relieves repression of the transcriptional activator ExsA (which activates expression of T3SS genes) by ExsD. P. aeruginosa SpcU binds the cytotoxin ExoU, which is a broad-specificity phospholipase A2 (PLA2) and lysophospholipase, and maintains the N-terminus of ExoU in an unfolded state which is required for secretion. Salmonella enterica chaperone SicP forms a complex with effector protein SptP at an early stage of its secretion process in order to avoid premature degradation, while chaperone SigE binds to effector SigD, which, upon translocation into the host cell, preferentially dephosphorylates specific inositol phospholipids that are thought to be crucial for subsequent activation of the host cell Ser-Thr kinase Akt. This family also includes Yersinia chaperone/escortee pairs SycE/YopE, SycH/YopH, SycT/YopT and SycN+YscB/YopN, all of which bind to specific Yersinia outer proteins (Yops). Also included are several DspF and related sequences from several plant pathogenic bacteria. The "disease-specific" (dsp) region next to the hrp gene cluster of Erwinia amylovora is required for pathogenicity but not for elicitation of the hypersensitive reaction. In addition, a group of proteins including Escherichia coli YbjN, Erwinia amylovora AmyR, and their homologs, are included in this family. They share a class I T3SC-like fold with T3SS chaperone proteins but appear to function independently of the T3SS.	1.6882e-07
NZ_CP011040.1\|WP_010558691.1\|1357137_1359687_+\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	1.1445e-32
NZ_CP011040.1\|WP_010558699.1\|1348676_1349555_-\|aspartyl-protease-family-protein	gnl\|CDD\|133150	cd05483, retropepsin_like_bacteria, Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.	6.74726e-08

>NZ_CP011040.1|WP_010558692.1|1355546_1356323_+|NERD-domain-containing-protein
MDLSTYLNMVIGSFWYLIPLFIFVAIIKSACFKGVFGEWQVNQLIKFFLDKNEYHLIKDVTLPTENGTTQIDHIIVSKFGIFVVETKNMKGWIFGGDNQKQWTQKIYKHTSKFQNPLHQNYKHVKTLEACLTTKKECVFSVIIFIGDSTFKTKMPDNVAFARGGIEYIKSKKEIVFTNDEVANIVDQIESGRLKRGFKTNRQHVKHVKAIVEQKPDTKPCKKCGAEMVLRKATKGKNAGNEFWGCSSFPKCRNILKIS
>NZ_CP011040.1|WP_010558693.1|1355014_1355521_+|metal-dependent-hydrolase
MPFTPIHMGPGVLIKSLLRGSFSLMVFGWTQIVMDIQPLIVLITGEGHLHGFTHTYVGAILIALFAALTGKYLSELGLKILRITENDTSISISWGVVLLSAFIGSFSHVLLDSIMHADVEPFFPFTLDNQFLGIISVPVLHKVCLYSGLVGAVIYYGINWKLKKTINH
>NZ_CP011040.1|WP_010558694.1|1354093_1355014_+|DUF2199-domain-containing-protein
MNELIKCSCCDKMLLANQMELTFGLPDEIFALPEEEKEVRAEGSTDLYVLDGNRFFVRGLIPLPVKNQEDYCLGAWAEVSEKDFERIEELWDVDVRVEEPRIDAILANAFPYTTSNGLIELEIQLQDSKSRPMFYITSHGCTLFDEQSNGIPAHRAFEYTSYTNKNRFSVIEEDELESSSCSCCESEIKLFCGRVENQLGDVEADYWIRIPTGHPNKFTVAISIDKNDYPRVAVLYGENGDEGLTYWIQEIENSPWEDFGDYGKVIGRDEVLADQYRAFFFDVVDQIAAQDTRLKTQIGRNIEDLN
>NZ_CP011040.1|WP_040641880.1|1353597_1354101_+|hypothetical-protein
MKWTKLKHLSEQRIASSIRPRFSINCAAYGACLCGHAWITLDKKVVANFCTRVFWNIPRMFDESNKKWVSKDPELINRIASANSDELSNYGELSRQDAYEACWEFVHDLRSEQALNSEDSLIQTLAVIDKRRLKEIEAENLPPLAKKLLLERCIAENVETKLKEKHE
>NZ_CP011040.1|WP_148665327.1|1352090_1353110_+|hypothetical-protein
MERLVKSFKIPASAVALGLMLTLTGCKTTYKVDQNLVQQFKTEQPKEDQTYVYMIRGSNFQGGARGAWIAVNDKVVADLSNGSHTLLKLDSGINSLHLVQGLAGFGYAKIDNRPGETVFMSIDYSTGKTTEIDYDLGASMVMRTKYKAELESPRKNDAYDNLLANPSLLGFDIMQDGKNPMKPDDEHAVINFFRMEKLIGSVPFDIWDEDGFVASTRVGQYFQVKVKPGKHKYIALSERYSVLEANVEAGKEYFVEFDVDMGWNQAHVQILPLDAEEDKKTISKWQNKARLKVVNQDVLNSNEFKTRVEMAKTYLAPKFKAANSKELAQRVMNPENGRL
>NZ_CP011040.1|WP_010558697.1|1351009_1351705_-|response-regulator-transcription-factor
MSSTINILYVEDDVASAQILTLYLEKQGYRVSHFDNAVDAQRALDNLAFQLAIFDVMMPGGDGFSLLKNATKKDIPSIMVTAKVTESDRIHGFDLGADDYVCKPYSPREVVSRVQALLKRSYKHTGAHQVWLFGQLEIDVDAKLVKLAGDHLKLTAVEFAILVSLVTHAKRIISREQLIDLVWQGRSDITDRAVDTHLANLRKKLGDSKKDPTYIATHYGQGYQFVAAKTQ
>NZ_CP011040.1|WP_010558698.1|1349621_1351013_-|HAMP-domain-containing-histidine-kinase
MKLRTKFTLLVASCTFVLLGIYYLLSVYTASNAFVEFNQKSVVQMTTELLDDDNVEAQITSLPRNFSVQQQYTALSHVFTEQLFILVQNERVILPSVSATDLRITYIAVEHGHQFKIAPLNQSPLLIQFSQEQLLLNDQTGEYALFWLPKNTLERKHQESLLMSRLADEFMLSLLGLSLLAALLSWLGAWYFLKPLKHLKHSFKDIENGNLDTRIEVTKHDEVGEILASFNRLAAWLQGLHQQYRQMNSDLSHELRTPLNAIRSRVEAMEDGILPMEPEQLSVLGKEVESLSQLIDDLSLLSLTESNQLTLQFEEVDITQLITDLMAKYQHQASSLGIVFTSDLAPNTRLVTDAKRLRQILVNLLDNAFKYGSAGQFIAVSLNACDTYVDIAVEDHGEGMSQTQLDNIFERFYRVQTSRNDTNSLGLGLPICKQLAELLSATLTVVSEPNKGAKFSLRLFKKS
>NZ_CP011040.1|WP_010558699.1|1348676_1349555_-|aspartyl-protease-family-protein
MKAILSTVVVGIMSFSTNANQENTKPVTMPMQFTQYGHVMVDVQLNNADTVPMVLDTAATSGVISNSLLNELALPESALEKEEVTSATSKMILTQANVNTTRVGHTSVMDLPYITQDLTVLKTAQGKVPGILGYGFLEKHCTVLDFVKSEVTFHAQTCSEQVTHDLKSQAFWLDEEFIKFNVEFNGHNVDAVLDTGAPINIINSLLLAKLDVEKKDKEDLKGLHGKAIQKQKLGEVSFNIGEHTVTSANTTVSDMPVFKKLGYENKPVILMGLADFKGGKLVIDYQAKHIYF
>NZ_CP011040.1|WP_010558700.1|1347113_1348517_+|hypothetical-protein
MTFELTAFRNIAQNKGLKDTANLIDNHGGKFGDISALGSGTTPLRAEFVKSLDQSGMMKGLSQEQQTTLKNSASPLTVGEVRAVFESSSIDIRGNDKVAAAKESTIARQGLVGMGSTAFEAVKEHISGQLDRIIDMENKLNSYREHKAAGTLSTSELTPEQQEVLEAIDELYTETPIEKALAHRKARLLDKIDTNKINIAGIFGDSYDDMKTRLDAFTNFYLISTDAHSKERYDSARENDVFTDRGRGDNIARRDRAPSAKDKNSGISAQEHRRESQENVFAKSTFHAKGKLTAQDVDASNTVKAFRENGAPFIGGVSGSLLSEILDIEFAADGKEPKVADSDGISDDELAKRELLLGVKSMELIALGHHSLSECLIAAQTLGYFQHIESPLKDYPKAVSQFEQFMNDALKDKPEAAPEVAMVAAEQAAPLGDIADDAAAPIIDEVAVAANNGNEPAVAVAAVEPKK
>NZ_CP011040.1|WP_010558701.1|1346505_1347003_+|type-III-secretion-system-chaperone
MVIKQAEGIMDSCFNFIALIEEYQKLKGIAHLNWEAGNSFSLSNEEFEINIGFDEQSQTILLVSYVGVINSSNKEDTYLRLLLENYANRSGSNAFWGFYSTDEATLTIKKAAHHTDQYVFSQWVEQLCLDTHKARQLLKELAESNAHTNHTDLSKTYTQNQFITP
>NZ_CP011040.1|WP_010558691.1|1357137_1359687_+|leucine-rich-repeat-domain-containing-protein
MNKTLSRKLVAFALSSFLIGCGGGSDSKKDSTPAVVNDAPTISAFSPVEVYERQTVTVTPDASDNDGSITQYLWQQTSGTDIVQFAANESELRFVAPDLQQDEIVTFELTVTDNDSATAKQIVEITLKAYQNIEDHLIDNAGLNMCISQYENADLGIESLECISESIESLKGIELFTRLEKINIQSNKLSNISWLTELNNIKDLQLTHATIDNISKDIKKISSLQSLSLNSAPYTYSKIDADDIAQLTSLTSLSLNNFEITNSDEFHRLANIESLSLTDLNLTSLSFLVDWTKLTSLNVSHNLRLSDLSALINQTQLLKLDVSETALSDFNPISKLVNLKHLTLNRANSGVLDIKTLEPLKQLETLEINNLRIESLNSLEALTQLTYLSVASSNLSNISFLSKLTEIKELDISGNARLSDISHLIHLSKLQVLRASNNQNLDDLSPLAEVTSLKELELSNLYYSYGRGIIDISPLKNLSSLERLDLNSNRLENIDTLSYLTNLKELNVSSAQLDTLFNFSQLQSIEKLDASASGLTSIDELNTVVSPYLEEINLTGNAIADISGIKNLVTLKRLDLSANDVEDISPISELTELEVLSLSENPIKNIDALDNLTNLKTLSLRGLTEVTNIDSLFKLTALKTLELHDSYNILCEDIARLKLELKETNILSYNNCLSSPADLNLIEDVNLLHCITVGKTIVDINDITYLTCYDNDISSLKGLEQFVNITELNLTKNKVTNISPLSSLTSLEHLNLNDNQGITDLSPLADLTNIFALRLANTGVSDISPLSGLTAMKMLFLSQNNILDASPLIPLNRLGALYLSGNNALDCSTLKEVKELDSLYHLTIPEHCQ
>NZ_CP011040.1|WP_010558690.1|1360003_1360885_-|nuclear-transport-factor-2-family-protein
MKIKHSTSKFLAAIITSMSILSSVSANSTPLEPLNQGSSMKAIAIKAQDAFFKDYNAADVKKYFREDYIQHNPHVPTGLAPVLGFLPKLKEAGTTYTNHRLLQDGEFIIMHNTYNNAEAFGAKEVVTFDIWRMQNGQVAEHWDAIAPIVKETVSGRSQFDGPTKVEDIDKTEANKKLIANFMQDVFFGKAPQKITEYISAKQYDQHNPMVKDGLDGLNEALAYLASQNNMFEYHKVHRIFGEGNFVLTQSEGRWNGKPQAFYDLFRVKDGQIVEHWDVIQEIPAQMAHSNTMF
>NZ_CP011040.1|WP_010558689.1|1361006_1361903_+|LysR-family-transcriptional-regulator
MSISSINRLKQMAIFCKVIECGSMRAASEALSMTPSAVSQYITQLENELEVALIYRSTRRLSLSEAGKRYYQHGKRMLMAAEDAEDAIYEVKHSLEGEIRISATVGIASHPLAQGLKEILDNNIGLSITVIANDKSIDLVAEHIDIAVRVGEPEESNFIYHSLGKLAKSIFASPEYLKKHSNPVLPSDLKKHYWLKHLSQGKFSDISLTHSNNETFHYQPKYRMRFNDINALTSHVQAGYGMAILPDLEVQHLIKAGMLVKVLPDWQLDPLDLYALTIDRKQSYKVKAVLKALKEFFA
>NZ_CP011040.1|WP_010558687.1|1362585_1364439_-|asparagine-synthase-(glutamine-hydrolyzing)
MCGIIGQFSCTTIKPSVTQEALSSIQHRGPDGNGSMLFETDMGNVMFGHTRLSILDPSESGAQPMQSKCGRYVITFNGEIYNHLDLKKIYLSGQSFNGRSDTETIVELVSVLGVDKTLPLLNGMFGFAIYDKQESKIHLCRDRFGVKPIYYKVDKQSFHFGSEIKPIIKVSRTKIHVSSVSLNLLLQFRYVPSPYTLFEGIKRLEPGHVITFSLKNSNYTLASFVKYPISRFSGSYEEACHQYKEFFQQAVERQLQSDAPVGVLLSGGIDSALIAKFASEKKPGLSAYTVGFEGDCEQNEIKQAKHTADALGLKHHSVIVSNNELWNSFQSAVSFNEEPLGTTSILPMWHLTHNVARDLKVVLTGQGCDEPLGGYQRYRAEKITSQPVLNLLGKLGSPLLKLAGARNDKLRRLHKVLSANSPAERFLNSYSMFDDIVIEQLIGKVNKVESIELIEYWLKFAKREKSAEDMMFIDTRMNLSDDLLLYGDKLSMSASLEARVPALDNELINYIESLPLNYRLTQRQNKRIHRDVARQYLPSEIINRPKLGFEVPFGELLKSDWKVNAEDVLFGSEKLYNYINKDAVNQIWYQHKSGKIDLSRQLFTFMSLSFWVEEHLS
>NZ_CP011040.1|WP_040641849.1|1365180_1366026_-|transposase
MSRPLRLEFAGALYHVTSRGNERKPIFRNESDFSTFIEVLSVVCERYNWVIHAYCLMTNHYHLLIETLDANLSKGMRQLNGVYTQRFNRNYQRVGHLFQGRYKSILVDKDSYLLELCRYIVLNPVRAKGMVDHPSEWLWSSYHETTGMREAPEWLAVDALLRMFETTKLEAIERYKHFVAQGKEVNIWQNLKSQIYLGDEEFVEKHKSAIQSDVDVVLNEVPKKQVRPKAKPLSYYESTSLNIKLAMAQAYLSGGYSMIEIANYFGVHYSTVSRAVAQSKT
>NZ_CP011040.1|WP_010558685.1|1366534_1367821_-|hypothetical-protein
MLLPKKTFLGHLKLYEVYDDYFGPKCFTVKNQFGQIYLVYWNGDDNNATQWLYVLVTESKLDLITQCSICIRKVFQEPEAGQVFGVTINQDGESNINVMGFLDEESLPPTEMYINPSSIVTHHPEAEWGFKVKIAKKNRKHEAPERKSVTKIIDSFSELLESLMKGINCGKRTEPRIYPLAASFGSFEVSLKTNDNEDAAVAIEQLYELLTSTEDLNHKLNNLGLDPYRLQELLEIIRDNHAVLKVTPKTNAYLEKPFDFGKVGLNELIDKLNSMNLTFIDSKKVPQANDIKRVINIVRKKALGEEVTYQNIEGISSDRQLKYHLHAAKCLGLLKDNYSISASGRFFSLIDTTDGQYSYLANQFESAEFGWCWMKWAKVSSITKLDPSTAADFVKESVNGLNEGTSERRATCLSSWLKLLQPFAQKYE
>NZ_CP011040.1|WP_010558684.1|1367821_1368223_-|hypothetical-protein
MPLPKYNWPECYPDDVPCGKTVAANGDAYRLVDTIPPTSADFKMYKEDCPHHNLPKDQKKYAFGVSFWATLEAAKEVKRRYPRANQFGRKKIALIDFKQELGVIAIDQPRENHISLWKQEGYCPSECFKKEEV
>NZ_CP011040.1|WP_010558683.1|1368319_1368805_+|hypothetical-protein
MQNKKLKLIIFFIIIYMTCYSITALICLIDIWFSTNFLLVDEFISAQSSNVFISFLSCLFGSLLGAAILGFTSLHRHIKNFDSSLSIGYFLSPILSISLGVLAFCLVQASFVFLSGNELSKDTAAQPPYGFAVFGFIFGYNWHIAIALLDKLSKKLQITSN
>NZ_CP011040.1|WP_010558682.1|1368873_1371765_-|aminomethyl-transferring-glycine-dehydrogenase
MSNVKSLEQLEQKQDFIRRHIGPDANQISAMLAELGVSSVEELMNETVPASIRLEQGLSIGESRTEVETLSYLKSVASKNKIFKSYIGQGYHPTHTPNVILRNVLENPGWYTAYTPYQPEIAQGRLESLLNFQTLSMDLTGLDLASASLLDEATAAAEAMALAKRVSKAKKANIFFIAEDVHAQTIDVVATRAEQFGFEVVVGPAADAVNHEIFGALFQYPSTTGEVVDVQGLIADVQDKKAIACVAADIMSLILLKAPGKLGADVVLGSAQRFGVPMGYGGPHAAFFATRDKYKRSLPGRIIGVSKDRLGNDALRMAMQTREQHIRREKANSNICTAQVLLANMAAFYAVYHGAEGLRTIASRINRFASILATGLKAKGVTLKHDTWFDTITVTSNKDEVVARAEAAEINFAKNHDGEFSISVNETTTREDVAELFDIILGAGHGLDVAALDAQVTADNITGIPASLVRDDEFLTHPNFNSYHSETEMLRYIKRLENKDLALNHSMISLGSCTMKLNATAEMIPITWPEFANMHPFCPLDQAEGYQVMINELHDWLVDVTGYDVVSMQPNSGAQGEYAGLIAIRKYHESRGEGHRNVCLIPSSAHGTNPASAQMASMKVVVVECDKQGNVDVADLKAKAEEVSENLSCIMITYPSTHGVFEDTIKEICDIVHQHGGQVYMDGANMNAQVGVTSPGFIGSDVSHLNLHKTFCIPHGGGGPGVGPIGVKSHLAPFMPNHSVINVPGTTEGNGAVSAAPYGSAAILPISWAYIAMMGSEGLKQATETAIVNANYLTEKLSAHYPILYRGQNNRVAHECIVDLRPLKESSGISEMDVAKRLMDYGFHAPTMSFPVAGTLMIEPTESESKVEIDRFIEAMISIRKEIAKVESGEWTVENNPLVFAPHTQADVLGNEWERAYDRFYAAFPVPAVAKDKFWPTVTRIDDVFGDRNLICSCPAVDTYRDE
>NZ_CP011040.1|WP_010558681.1|1372007_1372397_-|glycine-cleavage-system-protein-GcvH
MSNIPADLKYASSHEWVRAEGNGVYSVGISEHAQELLGDMVFVDLPDVDDEVDAGEDCAVAESVKAASDIYAPISGTIVEINEELEDSPETVNSDPYGDGWLFKIKASDESELDNLLDAEGYENSIDED

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011039_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011039_1

1977383-1977530

Unclear

Consensus_repeat	Method
ATTTACAGCTGCCTATGCGGCAGGTCAC	CRISPRCasFinder

2 spacers

cas6f,cas7f,cas5f

The CRISPR arrays of NZ_CP011039_1

>merge|NZ_CP011039|1|1977383-1977530|CRISPRCasFinder
AATTTCAGCTACCTATGCGGCAGGTCACATAAACTCGTTTAACGATAACCTTCACTTTTGATTTACAGCTGCCTATGCGGCAGGTCACGTGCAACTGTCAAACCCGCTTTTTCCGATGGTATTTACAGCTGCCTATGCGGCAGGTCAC

>NZ_CP011039|1|1|1977383-1977530|CRISPRCasFinder
AATTTCAGCTACCTATGCGGCAGGTCAC	ATAAACTCGTTTAACGATAACCTTCACTTTTG
ATTTACAGCTGCCTATGCGGCAGGTCAC	GTGCAACTGTCAAACCCGCTTTTTCCGATGGT
ATTTACAGCTGCCTATGCGGCAGGTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011039.1\|WP_010559731.1\|1972342_1973023_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011039.1\|WP_010559727.1\|1975265_1976522_-\|Y-family-DNA-polymerase	unknown	unknown	gnl\|CDD\|176454
NZ_CP011039.1\|WP_010559732.1\|1971582_1972329_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011039.1\|WP_010559723.1\|1979263_1981315_-\|hypothetical-protein	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|187867
NZ_CP011039.1\|WP_010559725.1\|1977651_1978245_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870
NZ_CP011039.1\|WP_010559729.1\|1974007_1974298_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011039.1\|WP_010559735.1\|1968601_1969306_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP011039.1\|WP_010559734.1\|1969329_1970586_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP011039.1\|WP_010559716.1\|1991912_1993754_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_CP011039.1\|WP_010559726.1\|1976509_1976923_-\|DNA-polymerase-V	unknown	unknown	gnl\|CDD\|182350
NZ_CP011039.1\|WP_010559728.1\|1974367_1975150_-\|endonuclease	unknown	unknown	gnl\|CDD\|185091
NZ_CP011039.1\|WP_010559721.1\|1983131_1983437_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP011039.1\|WP_010559724.1\|1978241_1979264_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09737_cas7f_CAS-I-F	gnl\|CDD\|187868
NZ_CP011039.1\|WP_010559737.1\|1966066_1967275_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NZ_CP011039.1\|WP_010559717.1\|1990896_1991910_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|377533
NZ_CP011039.1\|WP_010559736.1\|1967285_1968599_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274576
NZ_CP011039.1\|WP_010559720.1\|1984514_1985234_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011039.1\|WP_010559718.1\|1987984_1990687_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238977
NZ_CP011039.1\|WP_010559722.1\|1981318_1982497_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NZ_CP011039.1\|WP_010559719.1\|1985249_1987985_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238645

Protein	Function_ID	Function_description	E-value
NZ_CP011039.1\|WP_010559727.1\|1975265_1976522_-\|Y-family-DNA-polymerase	gnl\|CDD\|176454	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	1.39292e-151
NZ_CP011039.1\|WP_010559723.1\|1979263_1981315_-\|hypothetical-protein	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	2.22825e-24
NZ_CP011039.1\|WP_010559725.1\|1977651_1978245_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	4.32276e-39
NZ_CP011039.1\|WP_010559717.1\|1990896_1991910_-\|AAA-family-ATPase	gnl\|CDD\|377533	pfam05621, TniB, Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.	7.73931e-23
NZ_CP011039.1\|WP_010559735.1\|1968601_1969306_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	9.85771e-109
NZ_CP011039.1\|WP_010559734.1\|1969329_1970586_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	5.18456e-29
NZ_CP011039.1\|WP_010559716.1\|1991912_1993754_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.06875e-10
NZ_CP011039.1\|WP_010559736.1\|1967285_1968599_-\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	7.47261e-26
NZ_CP011039.1\|WP_010559728.1\|1974367_1975150_-\|endonuclease	gnl\|CDD\|185091	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional.	8.97401e-52
NZ_CP011039.1\|WP_010559721.1\|1983131_1983437_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.60019e-12
NZ_CP011039.1\|WP_010559726.1\|1976509_1976923_-\|DNA-polymerase-V	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	5.91973e-26
NZ_CP011039.1\|WP_010559724.1\|1978241_1979264_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|187868	cd09737, Csy3_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas7 ortholog.	7.47207e-110
NZ_CP011039.1\|WP_010559737.1\|1966066_1967275_-\|ABC-transporter-permease	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	1.7608e-32
NZ_CP011039.1\|WP_010559718.1\|1987984_1990687_-\|hypothetical-protein	gnl\|CDD\|238977	cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.	0.00609671
NZ_CP011039.1\|WP_010559722.1\|1981318_1982497_-\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	4.32399e-14
NZ_CP011039.1\|WP_010559719.1\|1985249_1987985_-\|hypothetical-protein	gnl\|CDD\|238645	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.	4.6023e-06

>NZ_CP011039.1|WP_010559726.1|1976509_1976923_-|DNA-polymerase-V
MNVIPIKAEAGITGFESPAAEYQELGLSLDELLVEHPTATFIGIASGDSMVGVGIFSGDLLIVDRALEVRHGDIIVANYNGGFTCKILDKERGLLVSASQYHPPVVIKELDTFQLEGIVSRSVRLHRKSKEVFSCLR
>NZ_CP011039.1|WP_010559727.1|1975265_1976522_-|Y-family-DNA-polymerase
MFALVDAVAFYASAEKVFDPSIRNKPVVVLTNNDGCICAVCPIARKLKIPKFEPYFKLKNFLKKHNVVVRSSNYELYADLSARMMTEINRYSDNQYIYSIDESFLHFEGFNRIVKDWHAYGHEIRRSVWRKTKIPVGVGFGPTATLSKAANHAAKKLPGFDGVAVIDNEASRKHILGMMDVGDVWGVGRRISKKLKIMGIHTALDLANQPAKIMRKQFSVVLERTINELNGTACLSWDEVKQKKKEVYSTRSFGERITDIHSLKSALTAHCSIVSRKLRKQGSLAKRLVIFAHSSPHENNYYKRAFIHEFPVASSDATVFANAVKNVIVSIYKPGVRFYKCGIGAIELEDGMHHQADLFNQSQDKPELMKCLDEINNRFGSHTLKIASEKQTSSWKMRRDLLSPRYTTRWSDIPVIQC
>NZ_CP011039.1|WP_010559728.1|1974367_1975150_-|endonuclease
MKKMLTTLLLLVCSNAYADYPTSFRNAKTKAEKEVYFDRSTTFYCQCDFVFDDIKDVDSDGNITETKIDPKACGYEPRNPITKKGKENKRVSRIEWEHIMPANIIGGHLDQWKNYKNYQICKNKNYKTRECAYHLVPEFKRAHDDMNNLVPAVGELNGDRSNFRFANIEGEKRAYGQCDFEVDFEADTAEPADNVKGNIGRVYLHMMKEHKVLLPEETVKMMMEWSDLDPVDAWECERNERIKKSQGLGNSFVEVACEKR
>NZ_CP011039.1|WP_010559729.1|1974007_1974298_-|hypothetical-protein
MEFKIAELIAATISGMTLWTLIKPRQSNTQVKQLKANQEYAKLYNYLKSTPENMESIKTTCEKLNWTQNQLIRVVKRTPFRVCIKGKCIRVEVYES
>NZ_CP011039.1|WP_010559731.1|1972342_1973023_-|hypothetical-protein
MKKLVILVLLFSYSLSAYAGLGDWFKNEVIPTIKGERPLKIDPKRVSITENGKKILDLDLKKDTLYIQAGDVSFKTGELKKDLARAGAIFSGNTAVLSQVAAEQLQKELEKAQKEGLVKLSKTPPAKKVEIPKEIENVKPIEVKIGKEILIYNQTPVILKYALNDEVFELPSGEGFKHVSKSDEFYLQFDDNLQGEFNIARYFLTGKEYGLLVESGSQFISIKKYK
>NZ_CP011039.1|WP_010559732.1|1971582_1972329_-|hypothetical-protein
MNRRKFLKNSAALGLSCTSFSLLFDIFNGGVELVLPSIEGDLKVILPRKDFSIIPSAYAQNYYYNASYQKMAYYSELLAYQKAMAEWRRQLIRYQMQRYQWIQQQQIIALQNLMASYSTYQIGQPKPWNSIKSIYGFAVYNNQPTLFGVNSQSKPVAVKKTVQGAGAVFAKVGEYFGESTQEKATGPQSSESPAKIVLPNGSTLDGNGYKTEYGELGVSNDIVQTQNGKVGQLAKYKLNKDGEQYLIV
>NZ_CP011039.1|WP_010559734.1|1969329_1970586_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MIKDTSGQDQVIKQKPKRLKPALAITLMLSVVTWTGFAMFNSDNASMSINKAQLQLAKVERGNLVRDVAATGKIVAANAPKAYSPEQGFVSLNVKAGDTVEKGQVIAEVESPELNNSLKQQESELARLKGELARSELAARRHALALTKTLDLAQVELNAAERENRRAQLSIEKRLISQIDLEKAVDDLAKAKLTYKHAQQEVELAKDTLSFELQSSKSQVARQQLVVDELQRKVGNLAIKASVSGIVGNLLVQPKAMVVKNQALLTLVDLSAFEAELQVPESYANDLGIGMTVELKIGSEQITGQLSAISPEVNNREVTTRVRFETSDISNIRQNQRLSGRILLENRSDILMVRRGGFLNAGGYVAYKINGDLAQKIEITTGVTSINHVEVLAGLDVGDEIIISNYDTFKNADALLLR
>NZ_CP011039.1|WP_010559735.1|1968601_1969306_-|ABC-transporter-ATP-binding-protein
MLKMNNISKVYQTEMVQTHALRDFNLSVEEGEFIAVTGPSGSGKTTFLNIAGMLEPFTSGEYLLDGIDVGKLNDNQRADLRNQKIGFIFQGFNLIPDLNLYENIEVPLRYRGIKAAERKRRIEQCLEQVGLASRAKHLPQQLSGGQQQRVAIARALAGEPRFLLADEPTGNLDSLMARQVMELLEQINRDGATIIMVTHDAELARRAPRNIQVVDGQLADFTLYQGNPNVAVGA
>NZ_CP011039.1|WP_010559736.1|1967285_1968599_-|ABC-transporter-permease
MLSHYIDLSWRSFKRTPLVSFLMVLAIAIGIGVTMTSLSVYHMMSMDPIPNKSKKLFAVQLQTMDEVETWFSSDDLPYQLTYKDTTNLLNADLPYKRAAMMKTGFSVHLNSDKVKPFFETTRVFSRDAFEMFNLSFIHGGVWSIEQEESAAPVVVISQSLSKKLFGSDNSVGQTLYLDDLSMRVVGVIKDWQLHVKYYDLNNGSFNDPEQIFIPFSLIKANEINTWGNTNGWKYEVVKTFSDKLNSEKVWLQFWVQLNNAAEKQAYSEYLANYIAQQQTQGRFNRKDAQYKLRDVNEWIAYWEVVNEDNKIMVALSFMFLAVCIANILGLLLAKFLRRAPEVGVRRALGASKRQVFYQHIVEVAMLGLFGGVVGILIAQLGLLGIRQSYSYYDSLANMDLIMLLTAPVIAIAACIIAALYPAWLVCKTNPSTYLKTQ
>NZ_CP011039.1|WP_010559737.1|1966066_1967275_-|ABC-transporter-permease
MLEIKPIFNALLRSKVGAVLLLIQIAITTAIVSNAAFIINDRIEYLNQPTGYQEDNMFKFNVMMFGTDVDLIQQVELDEATLRQMPGVVNAVHINAVPLTGGGSSTTFRLKPAPDKAKTDTASYFETDEHGLDTLGVELIAGRNFTQDEVVINRDFSKHPNVALATKALMDELFPDGDGLGKIIYMGDQPLKVVGIIGMMKGPWLKLEERKDKSVILPLLYPHKLQQFLVRTEPGQRAEVMKQIESVMHQSYGKRVIQDLKGLDKKKANYVAEDLLMMRMLVILISVLVLVTALGIFGLTLFNINKRTKQIGTRRALGARKSAIVKFFVVENSIICLAGLVLGVCGAVVLGQQLMTQYSVPALSYEYVAITALGVFVMSLFAVIGPAKRAANIAPSIATRTI
>NZ_CP011039.1|WP_010559725.1|1977651_1978245_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MSRAYFTITYLPENCDVTLLAGRCIGILHGFMNKLSCNHIGVSFPKWTDKHLGNQIAFVSEDKTALKNLSQQNYFEMMAHDKLFEISVIKPVPADATEVRIIRDQSLGKLFMGEKRRRMERAKRRAEARGEEYTPQYVSSDIEISTFHKIPIASKRNQNDFVLHLRLELANSIQNTFNSYGFATNEEYKGSVPLLAF
>NZ_CP011039.1|WP_010559724.1|1978241_1979264_-|type-I-F-CRISPR-associated-protein-Csy3
MKLPRQLTYTRSLSPGKAVFFYKTPESDFEPLQIERQKIRGQKSGFVEAYKNEATPKELAPQDLAFGNPHTIELCYVPPTVQQVYCRFSLRVEANSLEPNVCSEPKVSYWLTRFMNTYKQHGGFRDLAKRYAKNILICEWLWRNKTSPNVDLEIIGEGFKPISISKANRLRWEGKWREAEDSLHTLTDVIQTGLEDPYSFCFLEVTAKIDTYFGQEIYPSQSFAENGAIARTYAYTQVAGKDAACFHSQKVGAAIQMIDDWYDEGANKRLRIHEYGADYKNVIARRAPSKRLDFYSLLKKIALYVKEMEQNGLKNQEQASHIHYIAAVLIKGGLFQRTKE
>NZ_CP011039.1|WP_010559723.1|1979263_1981315_-|hypothetical-protein
MELNTLLQNTPIKELTQTLRVAFAPYSEYIDTTGSEFQALVVLINLTYKRKDIKDLTSMSAAKAVLRDEQHLKTCIDEVKWYHTHNLKYPDIRVSHQRLLAQVVDDGHRVVSSSRYPAQFGWSHDSAKINHAKLFLRGFIWRGEYVCLAQLLAKQEGFWVEQFSELGLLKKDVITVCEQIAAQLPNEDLPEQISNYTPQLLIPIEHDYLSVSPVVSHAVLAVMQTATRSGLLKRGIIEHNRPVNVGELPSALGGRVNVLKYFVKTYSATTVNNYYSQDEQRLFNVSLLNSKTLSEALLVLSKSKPFNTLRQKRLARVAAIKVLRTALYGWLEKLIKLVQSETINDSDSELVKLLATKEYKQLELTLSQELNKQMNGLKYLKRYAYHPKLMPILKAQLSYVLSHQNNQEGELEAEHIKYVHCQNLRVYNAEAMPNPYIMGMPSITALEGLGHQFQRKLQKLVGSGVHVIGVAVYIRSYQLHNHKQLPEPNKLKKDGQKREPLRSAIMQIPKCDICFDLVFRVQTKNQAVANDLSENLLKAAFPSRYAGGTLHPPSLYVQVDWCQVYAKPLALFERIRSLPKGGSWLYPTSVEVSSFEELAEQLTLRPTMRPAALGYLALEEPKPRQGSITQLHCYVEPVIGLLECVDAVTARLSGARHFFNHGFWTMHCKKASMLMKKSKFEYD
>NZ_CP011039.1|WP_010559722.1|1981318_1982497_-|TniQ-family-protein
MQFLSQATPYPDETIESYLLRLSQDNGYLGFADMADILWDWLVTQDHELEGAFSNELQSVDVYKASQSSNFRVRALRLVAQLAGVEASELLNLCWLRSNTQFGVITAVARSGLLVPRQLLRKSNIPVCTECLKQEVYVPYLWHLKVYKACHKHNRQLTKICRQCNTEIDYRVSEAFLECECGAAIKQGPKASQADLKLASALTSTADAKLVGLMAWFSQWQSISFDDDEFSELFVSYFSNGLSGFQDELSNIAELAKIKQLRPFNHTPFNDVFGSLLKDSKLACAGSQGYNTVQLAIIAFLTKLVEQNPKKKHPNLSDLLISMLDAAVILGTNTEQVFRLYEEGFLAAVQPPKKNTFLKPSDNLFYLRQVIELQQSFAPSISNKPQQFVPPW
>NZ_CP011039.1|WP_010559721.1|1983131_1983437_-|helix-turn-helix-transcriptional-regulator
MESPTPSRLKEARKAAGYTQQQLGIALGMEPNTASARMNQYEKGKHAPDFTTMKRIADELSVPVAYFYCEENRLAELIRSWSNMSEDARDQIIKIAKDISD
>NZ_CP011039.1|WP_010559720.1|1984514_1985234_-|hypothetical-protein
MSDQENTPISTFDELNIQIQVKKGEFESKQQASYWQRYVIRRIPLFTIPVLIFYLTIFALGFVKDIGTQVANSLVPSLPFSVYITSDTLCTLCAVVLVHFVFVGLKYKGMDKIWRLLNKLVFNVLMIAIIYSVSTLIYKEVHTVALGIVVFVPLCILPPLVDKTLGWTRQNDRFKLFSSKMQALIELNLARESFGVAISERNILEYLGVLEQFESQKYNDTVSDSFYILNKIEQLKQQV
>NZ_CP011039.1|WP_010559719.1|1985249_1987985_-|hypothetical-protein
MLYRQLSEHAAGCFYSDEQVAKLLWQFLRSPQDDTFGDMWQLLQNECYQLLTSSVDTRYPREFRLNDIRALMGQQCNAGLFVTSYLPWLDELADSLLIRNGDYLQFRESKTQAYVRLAAELDPSLLAGWQLADWLQQNPIPQIHDIRRIINAQLPFFAPPANSAKPFAEGHVHVWGVTTESLIFSEILFQSKPLKTKSSALSSELLSDVQTDKLLTRARTLFADIINFAKAANFNPDKQQDNVPTNSFSHWLQIRDESFRTSNDWELLAKLPHNIKQLNIQWLLSEFAQAICQRQANCWLWLHVFLSFIYKNSSTCPSTRVAILCFWQTMNALRRRLIMDGQGLSRFVETYNGSYLRKIGQPYQDNIRRIFAGKDDIAEIKSGLFSFTNKSIENFSHALLSSSNVILPKAPYIFGEHEIVLNEGALRYIDCLERWHYCGHFSRSQSAGIGKRPKADLKDNWKKAAKLLRKLNSQSGWSESTFLGGKLNPNFHFQPNRWFRGLDVAGDENALKIESFAPMLRWLRSGLHSKSATETASKDFHFSIHAGEDYAHPLSGMRHIDETVRFCDMRGGDRLGHALALGIEPAKWAKRQGEMVLYADEHLDNLVWMWHYATVLSTQLPLAQQVIPLLERRIARFYNKVSWLKQPKFHDEVEAQSEAPLFDSQTDKLTPDILYRAWLLRRNCYFRLKNLHGNNPMSAMEVVALPDWARLCDDENLASIIYKSRHSSLLSDEADAMVIVRVANEWEAQNNIGLSSSCGQLERNQNKKIIEDIDTPAELEFMVAIQDYLLTQYDSQGIIIETNPTSNVYIARLKSHKEHPIFRWSPPDESVLINGNAFNRFGLRKGPVKVLVNTDDPGIMPTTLRTEYMLLWEAAVQQGIGSTVAERWLESIRQFGLEQFHRSHLPVFEPI
>NZ_CP011039.1|WP_010559718.1|1987984_1990687_-|hypothetical-protein
MTTYIPLDQSESAEQIIPETILPKLIYNELVKLIASARDAAKSVDNNYNKSERSHKAISIDGERGSGKTSILVNLKSYIESTKPELLNDVHILEPIDPTLLEDGESLFLHVIVAAVLHDEDIKKAQSGNVNNDVSFSHTLEKLASALESVDDQKDLRGMDKIRSLYGNKHLVNCVTDFFKSTLRLLNKQLLVLPIDDVDTSLNLAFENLEIIRRYLVAPCVLPIVSGDRKLYDEVCWRDFHGRLMKDSAYQKLQAFNIAQDLANEYQRKILPLPRRLSMPEVESYWSNSGIKLGTVSGIPLRNFIAWLEIFLAGPVNGLENSRLTLPIPSVRALTQFIAHCGSLITTLPNEIREDIEPIKVQRLWQMPSVSIDAIEAFQIEYQKIHQQSSRDYKPAYKAFDEKQKISPDPTPSNLETDSSKLTRIWVDSLVSYFQHETRACAINLTLKAKQSWLNNGEGTYSHSSLFATPLFQPLTHSIQFKTSELQNDLAEWDTHLTGRLPVSWVDEIKSQKTAVPYPVPEVGVNSALNWQYWMSINNVIEATEQQKNKAIFFISALCHRNYYTNNKRSMMLNIGRVFEVIIASLVSDPDSNQFDSIRQRAPFYSTSDIAPTKTLKFGEEQKKQGISLEYAARETINDIPSVVYEQIDLCWQELLEEVVTWRKEYEIDKLNLSPWLVYKVFNKVFSQVANDDYYSTGMKSVDYALDIAAKAFYGTWSAFGSFEKGELFGLPTIVANTNINTSRNFESHNEHFSQNILPFSDRLNASDEELEARKNYGLFTRTVTQALAGHPFRKWLNDVSKVKWQSNDNGTTDVHQKLKQTEKIIKPIEPHKEYICEVLKIDPYTKLTQNAISKAMKKNTWTSQTFLQHLKILKKDYNEKAWNAFEKAGNKLFFDKGSD
>NZ_CP011039.1|WP_010559717.1|1990896_1991910_-|AAA-family-ATPase
MLTQAKKAKLNQFKAVFIEYTIPKTIINDFDKLRLHYDLAGEKPCMMLSGDTGCGKSALIKHYYDNNPPHFADGQRKVPVLLSRIPSNPSIESTLKQLLHDLGQFGAKSSKRLKNGNEIALAESLVEQLKRSGTELIIIDEFQELVENNLGKKRRDIANQFKYINEKAGISIVLVGMPWIEQIADEPQWSSRIFIRRFIPYFRISKKEELQLFIRVLKGFANRLPFSDKPRFENLDIALSLFAISNGCLRKLKNFLDSALTEALITDAVTLNKHCLSSAFKAWRPELDNVFEMNVNEIQGCEVEQYSTFKPDGPQDEDPFIDTQFCNKVPLVQLLKK
>NZ_CP011039.1|WP_010559716.1|1991912_1993754_-|DDE-type-integrase/transposase/recombinase
MEFEDEFSFEEAPQKLAKTANTEESNPQPRDLESLSKEVQEATLARLKYVKWLKQRLIGGWTQKNLAPLLAEMPEFEGQEKPKWRTVAGWYADYIKAEEDIHALIPKHHRKGNRQARSDTDKFFELALTRYLTKEIPNVASAHRFYCDQIVLENEKVLGEPLKPLTYKAFKNRIDNLPQYEVMLERYGKRLADIEYNKVMSHKRPTRVLERVEIDHTPLDLILLDDELDVPLGRPTLTLLIDVYSHCVVGFYLGFQSPGYDAVRRAITHAMKPKIYLKSTYPEVVNEWPCCGKIETLVVDNGAEFWCQSLELACEEVGINISYNPVGKPWLKPFVEQFFKTINEMMLSPFPGKTFSNMLARHDYNPKKDAILRFGTFTMLFHKWIVDVYHQSADARFRYIPCEDWNKGFAVLPPAQLTQQDTDKLDVVMCMAKEKTLRKGGIKNLHINYDSDELSVYRKRYCAKKSIKVKVKINPDDLSYVYVYLNALENYIKVPSIDLDGYTMGLSLVRHKIHLKFHRDYIQGKVDLLGLAKARRFIDERVKEEARQLKNVVSKTKVTGTKAMARAQGIDNTQVKSIVTIPEAKKTEPSPADTKVKKDVENWDDFVSDLEAF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011039_1	1.1\|1977411\|32\|NZ_CP011039\|CRISPRCasFinder	1977411-1977442	32	NC_041878	Pectobacterium phage CBB, complete genome	315955-315986	6	0.812

1. spacer 1.1|1977411|32|NZ_CP011039|CRISPRCasFinder matches to NC_041878 (Pectobacterium phage CBB, complete genome) position: , mismatch: 6, identity: 0.812

ataaactc--gtttaacgataaccttcacttttg	CRISPR spacer
--aaacttgagttaaacgataaccttcaattttt	Protospacer
  *****.  *** ************** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2219126 : 2228647

Staphylococcus_phage(14.29%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010561687.1\|2219126_2219591_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.3e-33	51.3
WP_010561688.1\|2219700_2220813_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	M4QPK3	Synechococcus_phage	7.0e-37	37.5
WP_010561689.1\|2220837_2221497_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	5.3e-24	37.3
WP_010561690.1\|2221498_2222620_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.4e-53	36.7
WP_010561691.1\|2222624_2223074_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_010561692.1\|2223144_2224401_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	6.2e-98	53.9
WP_148665242.1\|2224600_2226778_-	patatin-like phospholipase domain-containing protein	A0A1C9C5D6	Heterosigma_akashiwo_virus	7.4e-06	25.7
WP_040641993.1\|2226973_2228647_+	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	1.7e-39	25.4

DBSCAN-SWA_2

2583756 : 2627632

Bacillus_phage(40.0%)

protease,transposase,integrase

attL 2600520:2600537|attR 2629418:2629435

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054980534.1\|2583756_2584440_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_010562015.1\|2584591_2585692_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
WP_010562016.1\|2585891_2586578_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.1e-23	37.5
WP_010562017.1\|2586574_2587918_+	ABC transporter permease	NA	NA	NA	NA
WP_010562018.1\|2587925_2588426_+	DUF3299 domain-containing protein	NA	NA	NA	NA
WP_010562019.1\|2588475_2589285_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	F8WPX6	Bacillus_phage	3.0e-21	29.7
WP_010562020.1\|2589292_2589754_-	hypothetical protein	NA	NA	NA	NA
WP_010562021.1\|2589920_2590841_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_010562022.1\|2590965_2592978_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.2e-23	36.1
WP_005493124.1\|2593226_2593382_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_010562023.1\|2593394_2593631_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_010562024.1\|2593992_2595051_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_010562025.1\|2595062_2598185_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_010562026.1\|2598348_2599206_-	sulfurtransferase	NA	NA	NA	NA
WP_010562027.1\|2599205_2599988_-	YggN family protein	NA	NA	NA	NA
WP_040641320.1\|2600048_2600570_-	DUF1566 domain-containing protein	NA	NA	NA	NA
2600520:2600537	attL	NA	NA	NA	NA
WP_010562029.1\|2600583_2602278_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_010562030.1\|2602390_2602723_-	hypothetical protein	NA	NA	NA	NA
WP_010562031.1\|2602798_2603491_-	DUF2982 domain-containing protein	NA	NA	NA	NA
WP_010562032.1\|2603713_2604775_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_010562033.1\|2604771_2607861_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_010562034.1\|2607887_2608589_-	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	3.1e-38	46.5
WP_148665271.1\|2608580_2608643_+	hypothetical protein	NA	NA	NA	NA
WP_010562035.1\|2608654_2609179_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_010562036.1\|2609236_2611144_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	5.8e-07	32.6
WP_010562037.1\|2611538_2614793_+\|protease	M6 family metalloprotease domain-containing protein	NA	NA	NA	NA
WP_010562039.1\|2615126_2616251_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_010562040.1\|2616272_2618558_+	hypothetical protein	NA	NA	NA	NA
WP_010562041.1\|2618571_2620686_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_010562042.1\|2620686_2621277_+	hypothetical protein	NA	NA	NA	NA
WP_010562043.1\|2621532_2622438_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010562044.1\|2622661_2623396_-	hypothetical protein	NA	NA	NA	NA
WP_148665272.1\|2623443_2625357_-	AAA family ATPase	NA	NA	NA	NA
WP_010562046.1\|2625965_2626724_-	hypothetical protein	NA	NA	NA	NA
WP_040641308.1\|2626954_2627278_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010562048.1\|2627374_2627632_+\|transposase	transposase	NA	NA	NA	NA
2629418:2629435	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011040

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP011039

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection