CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP011026	Pseudoalteromonas arctica A 37-1-2 chromosome II, complete sequence	1 crisprs	WYL,csa3,cas3,DinG	0	1	0
NZ_CP011027	Pseudoalteromonas arctica A 37-1-2 plasmid unnamed, complete sequence	0 crisprs	c2c9_V-U4	0	0	1
NZ_CP011025	Pseudoalteromonas arctica A 37-1-2 chromosome I, complete sequence	6 crisprs	cas5f,cas7f,cas6f,DEDDh,WYL,DinG,csa3,cas3,RT	1	0	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011026_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011026_1

136523-136658

Orphan

Consensus_repeat	Method
TTGTAGGTGAGGTTTTATACCTCGCGGGTGTTTTTATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011026_1

>merge|NZ_CP011026|1|136523-136658|CRISPRCasFinder
TTGTAGGTGAGGTTTTATACCTCGCGGGTGTTTTTATAAGAGCAAAGCGCGATGTAAAATCGCACCTACGGGTTTGTTGAGTGTGGTGTTTGAGTTGTTGTAGGTGAGGTTTTATACCTCGCGGGTGTTTTTTATA

>NZ_CP011026|1|1|136523-136658|CRISPRCasFinder
TTGTAGGTGAGGTTTTATACCTCGCGGGTGTTTTTATAA	GAGCAAAGCGCGATGTAAAATCGCACCTACGGGTTTGTTGAGTGTGGTGTTTGAGTTG
TTGTAGGTGAGGTTTTATACCTCGCGGGTGTTTTTTATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011026.1\|WP_010554992.1\|142213_143833_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP011026.1\|WP_010554997.1\|135369_136464_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP011026.1\|WP_010554990.1\|144724_145753_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP011026.1\|WP_010554989.1\|145932_146439_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP011026.1\|WP_010554993.1\|141833_142142_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NZ_CP011026.1\|WP_010555001.1\|129443_130988_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NZ_CP011026.1\|WP_096058046.1\|126467_127648_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP011026.1\|WP_010555518.1\|121960_123109_+\|endonuclease	unknown	unknown	gnl\|CDD\|379160
NZ_CP011026.1\|WP_010554994.1\|139859_141788_+\|RecQ-family-ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|223588
NZ_CP011026.1\|WP_010555000.1\|131844_132849_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377990
NZ_CP011026.1\|WP_010554995.1\|138307_139612_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP011026.1\|WP_010555519.1\|123618_125139_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|372641
NZ_CP011026.1\|WP_010554991.1\|144056_144674_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198298
NZ_CP011026.1\|WP_010554988.1\|146588_147794_+\|anhydro-N-acetylmuramic-acid-kinase	unknown	unknown	gnl\|CDD\|236579
NZ_CP011026.1\|WP_010554987.1\|148101_148587_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011026.1\|WP_010555520.1\|125138_126464_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011026.1\|WP_010554996.1\|136712_138212_-\|DUF2235-domain-containing-protein	unknown	unknown	gnl\|CDD\|370774
NZ_CP011026.1\|WP_010555002.1\|127695_129417_+\|AIPR-family-protein	unknown	unknown	gnl\|CDD\|378452
NZ_CP011026.1\|WP_010554999.1\|133254_133581_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP011026.1\|WP_010554998.1\|133564_134953_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|341494

Protein	Function_ID	Function_description	E-value
NZ_CP011026.1\|WP_010554992.1\|142213_143833_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.68943e-54
NZ_CP011026.1\|WP_010554997.1\|135369_136464_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	7.1565e-60
NZ_CP011026.1\|WP_010554990.1\|144724_145753_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	0
NZ_CP011026.1\|WP_010554989.1\|145932_146439_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.6408e-29
NZ_CP011026.1\|WP_010554993.1\|141833_142142_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	1.31948e-08
NZ_CP011026.1\|WP_010555001.1\|129443_130988_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.98678e-26
NZ_CP011026.1\|WP_096058046.1\|126467_127648_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.86174e-105
NZ_CP011026.1\|WP_010555518.1\|121960_123109_+\|endonuclease	gnl\|CDD\|379160	pfam13395, HNH_4, HNH endonuclease. This HNH nuclease domain is found in CRISPR-related proteins.	7.49669e-05
NZ_CP011026.1\|WP_010554994.1\|139859_141788_+\|RecQ-family-ATP-dependent-DNA-helicase	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	1.27021e-133
NZ_CP011026.1\|WP_010555000.1\|131844_132849_-\|hypothetical-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	2.3038e-18
NZ_CP011026.1\|WP_010554995.1\|138307_139612_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	7.7715e-128
NZ_CP011026.1\|WP_010555519.1\|123618_125139_+\|ATP-binding-protein	gnl\|CDD\|372641	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	7.90224e-24
NZ_CP011026.1\|WP_010554991.1\|144056_144674_-\|glutathione-S-transferase	gnl\|CDD\|198298	cd03189, GST_C_GTT1_like, C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.	3.058e-34
NZ_CP011026.1\|WP_010554988.1\|146588_147794_+\|anhydro-N-acetylmuramic-acid-kinase	gnl\|CDD\|236579	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.	7.23858e-150
NZ_CP011026.1\|WP_010554996.1\|136712_138212_-\|DUF2235-domain-containing-protein	gnl\|CDD\|370774	pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain (DUF2235). This domain, found in various hypothetical bacterial proteins, has no known function.	7.04713e-24
NZ_CP011026.1\|WP_010555002.1\|127695_129417_+\|AIPR-family-protein	gnl\|CDD\|378452	pfam10592, AIPR, AIPR protein. This family of proteins was identified in as an abortive infection phage resistance protein often found in restriction modification system operons.	6.44586e-67
NZ_CP011026.1\|WP_010554999.1\|133254_133581_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.53615e-06
NZ_CP011026.1\|WP_010554998.1\|133564_134953_+\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|341494	cd17809, HipA_So_like, type II toxin-antitoxin sytem toxin HipA from Shewanella oneidensis and similar proteins. This family contains type II toxin-antitoxin (TA) system HipA family toxins similar to Shewanella oneidensis HipA, a serine/threonine-protein kinase that phosphorylates Glu-tRNA-ligase (GltX), preventing it from being charged, leading to an increase in uncharged tRNA(Glu). This induces amino acid starvation and the stringent response via RelA/SpoT and increased (p)ppGpp levels, which inhibits replication, transcription, translation and cell wall synthesis, reducing growth and leading to persistence and multidrug resistance. HipA is the toxin component of the HipA-HipB TA module that is a major factor in persistence and bioflim formation; its toxic effect is neutralized by its cognate antitoxin HipB. HipA, with HipB, acts as a a corepressor for transcription of the hipBA promoter. In the Shewanella oneidensis HipAB:DNA promoter complex, HipB forms a dimer that binds the duplex operator DNA, with each HipB monomer interacting with separate HipA monomers. The HipAB component of the complex is composed of two HipA and two HipB subunits.	2.10765e-131

>NZ_CP011026.1|WP_010554997.1|135369_136464_+|Fic-family-protein
MWIWQQQNWPNFTWDAAALAPLLRELSYNQGLLVGRMGVQSAQQKQQALDTLLANIIHSSAIEGEKLNAFSVRSSLAKKLNINEQPYPTTVQSDNLAETMLDAINNTDSPLNLERVLTWHRLLFAGEQSLFTKIEGGQLRGDEPMQVVSGRLDKPVLHFTALPKERVNKELSLFFNWFNKTQNDPQIDPFIRAAIAHLWFVTIHPLEDANGRITRLITDLALAQEHAESIRFYAMSVAILEDRKSYYEVLEATQRGDLCITQWVKWFLRTLNNAIHHTLNNIEQTIFKTNYWASKDQTKLGEQQVKVLNKLLDGQFEQGISASQYQKVAKVSRATATRHLSDLQTLGFLTKTAAGGRSTRYKIA
>NZ_CP011026.1|WP_010554998.1|133564_134953_+|type-II-toxin-antitoxin-system-HipA-family-toxin
MSSGIKKNSLDVFIGHTQKIGAITLDIGSENEIAFTYEPEWISKGFAISPHLPLNGDFDSRAVRNYLQNLLPEGKGLDEIISSTTISKNNTFGLIKVIGEETSGALSFRASNSTLKQTSFREVTSDELSQKLKRFVQVGESITHWDGRTRLSVAGVQDKLNLLEIDSKLGFGEGELCSNKIFKFETGTAPFIAVNELFTMLLAKESGLNVPHVELRTYADIRVFVIDRFDRRVTQDQSRVLRRHIIDGCQATNLPPSYKYERQHGDDGDGIYIRDGVSFAKLFNVKTTNVQAYEAQLIRWMTFNILVRNYDAHGKNISFFVGKNGLELTPFYDLVNIEAIIEQGSIDRDMGYLQPKISRCYAMSVGEHNSQSAGNFTNEITAYMLADFADEFAISLPRMQLLMSQTVDSVLAAIDTAKVSAVKNNLSTAELAHIDLCIKIINKAANKLSEQIIQLPNMDAFI
>NZ_CP011026.1|WP_010554999.1|133254_133581_+|helix-turn-helix-transcriptional-regulator
MSELPAKKTLGRVVKRTEMPDLSKPFSSVRLAKAITSKRTGMKLTLVDVSQALNISKPTLIKIEKGDVNVQFFNVLKVMEYLGLSFSLVSDDESHHNNNDEVSDEQWY
>NZ_CP011026.1|WP_010555000.1|131844_132849_-|hypothetical-protein
MILKDKTLINSNSAKIQAGQKQELDVAFYLRRAFKDHSQVFVFNDVKFKHNGETAQIDHLIAYTYGFILIESKSITGEVTINEHQEWSRSYRGNWQGMPSPIKQVELQLELLKSLMRDNAPNLLTKLFGKLQQGFGGREWHSICAISSNAIINRENTPKTIEDRLVKSEFITDKLLEIMKLPASKPNALHLFTTNVRPWFSEETLDRICQFILEQNISPNLQEPSYVPAEISESESVYDEALIASEQTNTEQVKPKSDLIKEITLACKQCNSATNLQPLSGRYGYFVKCGNCSANTPMKSPCSECSSTNTKTSKRKENYSLVCKDCEISTPIKL
>NZ_CP011026.1|WP_010555001.1|129443_130988_-|DNA-cytosine-methyltransferase
MENGEILVIDLFAGPGGLGEGISAAQTSDGKSPFQIGISVEKDFHAHKTLTTRAFFRSLKKRSQPLNNYYNYLHGKITRDELFELHPDIATEANQETLNGAKELGKDNKLIHKRIKELVKDHKGPKVLIGGPPCQAYSLAGRSRNAGNKSYIAEEDTRHFLYKEYLEVICLAKPDIFVMENVRGILTAKVNGQVMFPQILEDLRSPGSVTKHKKIPKYKVFSLVVDADNPEDPQYKDTADFLIRCEQYGIPQARHRVILLGIREDIKAPPEILKLCEHQVTVEQAISDLPNLRSGFSKQKDNAKDWETAVTKNAAKLKRILKKQFDPESANSLNLEPKIGLSRTESALSGKTPTMPESLKAWYIDPNLNVVLNHETRGHMIDDLLRYSYCAAYAQIQGLSPKSRHFPQELAPAHANWDTGTHSDRFRVQVADKYATTVTSHISKDGHYFVHYDPQQCRSLSVREAARLQTFPDNYIFEGTRTNQYVQVGNAVPPYLAFQIGQAILKVLSSLVLK
>NZ_CP011026.1|WP_010555002.1|127695_129417_+|AIPR-family-protein
MGGQNHCTTTVNESKERLQLFIIDESSLDETTAEQDLCVSLKADYERQFKKAVKFLNLSVKGTLSDKVQDSDGVVKSLIAKINSEEGLEQFDVVEIFLLTLTATVSNKGESIQPRKVHFEDDFLKVKYEKDNVSITKDILILKKVIDLNFLASVIESRGNREPLTINFTRDFKKRIEVIQAADERNFASYLCVLDAEVISGLYKRYSSRLLEKNVRSFLQFKGVNKGIKETIRTKPEQFIAFNNGLTVTATNAIIKPYKKSQYLEALTDFQIVNGGQTTASIYFSHKEGLDISKVKVMAKINVAKNVAENDLDNLISNISQFSNTQSRVSNVDLRSKSPQLRTLKSLSDSIITPSGFRWFFERAKGEFLTKVRHAGSNGNRLKKEFPRERRFTNMELAKYYSAWGNSPHLVKKGGEKIFRHFIEMLESEEEATEKVQIDREFYEKLIAKIILFRRMEKIYGQGKNSLGQLRAAVIPYTLSVLYIYTDASGSGKSFNLERIWKEEDIDTELQEYLKELMILMNELIKKYSASEDFNEYSKKPELWESIKECTEIQNLFKKSSTLSIFKKYTISL
>NZ_CP011026.1|WP_096058046.1|126467_127648_-|IS3-family-transposase
MTKLNRATYSAAIKLETAQLVVDQGYTQEEAAKAMGVGKSTVSKWVAQLKQERNGQSPLASPMTPEQIEIRELKKQIQRIELEKDIFKKGYRSLDVRLPEQFSLIEKLNQRERYPISVLCSVFNVHRSSYKYWAIRDTTPTPEQVRLEAEVKAIHTMSGGSAGARTIAAIATNNDFELSRYRAAKLMIKLKLESCQVPQHSYKRGGNEHLEIPNLLDRQFDVVEPNTVWCGDVTYIWIGNRWAYLAVVIDLFARKVVGWAMSLSPDSNLTLKALELAYESRGRPSGLMFHSDQGSHYTSLKYRQRLWRYKITQSMSRRGNCWDNAPMERFFRSFKTEWMPKVGYGNFIDAKYSVSDYINGYYNNVRPHHYNAGLAPNESEIRYKDSKTVAKFY
>NZ_CP011026.1|WP_010555520.1|125138_126464_+|hypothetical-protein
MSAHEYVEQIKKMINALAENLSDTNNILLSDFEAIFEKIKVNIPIMAPMIGLPIVDDISLRSYFDLARKEYLSINPTQIDPADSLSKTKNKSWLTSRRKDAIKWNYTERYLRLLKKTGRSEKIINETSRSSEDIISKLGDPSSSDEFYVKGLVVGEVQSGKTGNFNAVINRAVDSGYGLIIILSGIMEDLRSQTQQRIESDVIGEGLDEESGKKGKKGVGNIARFGQLGNSEVKQVVSVTSVNSDFKKSLVDAEFSLNHTNILVCKKNVSVLKNLIVWLSDYVDKGKEQLNIPFLIIDDEADNASLNNEGSKGHEYASKINGHIRALLNLFHKKSYLGYTATPFANVLQDRNEQPTKDWPIKYKDKGENREKLLKQVDNIFPEDFIYLLNSPSNYIGAKQIFETLEVIDNKAEGEKIPLLASPVDDYISEFPTRVFDEDDL
>NZ_CP011026.1|WP_010555519.1|123618_125139_+|ATP-binding-protein
MRKHSFASSFEDVTPNPEYLIKSISEQGYSFEAAIADLIDNSISADADKIEILIDTESEPFKLFLADNGKGMNENQLKNCMKFPSQSPDVNRLNKDLGRFGLGMKTASFSQTRKFTTISRPRGEVSFSARTWDLELLKNNKWNLLVNSYEDVVDILEQYINISHSRINAIPDFEANTIIVWEGLYKFEQYLEEKNRENALFKEVDIISEHLSLVFHRFMEKQGKSLQIRINNQVLKPFNPFPIKENDFRSLEFRKRKFGDDSIKIEGFILPSRSIKEANQGLSIWATKNRSLMDMEGIYIYRADRLILFGGWNGLIKKAPRLQLARLQVEIGNSADHLLHLNVAKSQVIIPHELKNAFQGYINDLKQEAEKEFYNRGIRQFNEPKDTSHVHLFERRTSSKGPVLEINKGFELIKSLFSELDNKQSAKLNMLLSMVNTRINKIRNTHENQDFTISRSLSEEELLINIQDLVMRGIDPEVIYKFVIPELGFNVDSLPQAVIKILEGVK
>NZ_CP011026.1|WP_010555518.1|121960_123109_+|endonuclease
MIGAMQQQLDFIAYIQRMLVEGEFTATYKYALLHAIADVCVEHKNSNPAAPMEIEIDTLVDKFIQLYWNHSVPYALGTTDIITNAEDMLLKQNSLGQAKFITEIFKLQNAGIKSYNAFKNDQQYSKVISSLRRTFIDGPLWRLQLLSGKEECFLYPHTLLGKGREPKRIVLNVGIAQCFRRFYDLVVHLSVTEWVEKVQTIKANQTLLGSQSQLQEFLFGTNRTALKVVAPLLIDIQKGLCFYCQKPMNLKNEKETKKTPEIDHFIPFKRYPNDLAHNFVAAHADCNNNKRDHLAAFAHRDRWLEQNLDTHKAEIANKLQPYFYCDSDKSLAVSNWAYQVAQANSAKLWVKKGYFEEAAGFKYQQPSAGLDLVAEEKPRYDV
>NZ_CP011026.1|WP_010554996.1|136712_138212_-|DUF2235-domain-containing-protein
MTGKTLIFNFDGTGSEPRDAKQFSSGQFKEDSSISNILKLHLLLGGKLNDSPITPLTNQLSFYYQGIGTKGSHLKRFLNQALAPRSDDVASILNQALNDFKAHYQLGDTLLLTGFSRGAALARRFAKCLEPLISNNVYVCVFDTVASIGLSKVSKATRGAEHVIFENHTIANNITQALHCVAIDEKRRAFEPTLMNHQNNITELWFAGAHSDIGGGYYRDGLADISLRYTLEWLIEQPLNISLLTSHDIDYETLLPNSNLVAQDDVTVIPDPLALSHQQNYFWFNPFFKLVDRQCYVLIDDEASNLEPLVHYSVAERINKLTSYRPESLKKRHYKISYNDNTTLSFIGLSQHIELANQNMSVLSINQSQDVMVFASEQYNATGLMLEQGATYRFTPYPNQYWFDDGIKCTPLGWNRDNVQLGVKEIPMAVLEPFRRFPRAQWFSLIGAINKNDDHLFEIANGADIKIDKSGEFCPFANDLSRFYGANAGKIKVKVTRLG
>NZ_CP011026.1|WP_010554995.1|138307_139612_-|NAD(P)/FAD-dependent-oxidoreductase
MSITIPKIVVIGGGAGGLELATQLGHKLGKKKQADILLIDKNRTHIWKPLLHEVATGSIDPDLDGVVYSAHAAKHHYRFQLGTFCNIDQSNKTITLSPLNDELGHTILPGRTVRYDHLVIAIGSVSNDFNTPGIKEHCYFLDSSQQAERFQHSLLDSFTRLHQDDNQQQSLNIAIVGGGATGVELSAELYHVSELLKLYGLTNMSSKRLHIHLIEAGPRILPALPERIAVSAKRELLKLGVNVREQTQVKEGTAQGFITKDEEHINADIMVWAAGVKAPDFIKDLGIFELTRSNQIQVNEFLQSTVDESIFVLGDCCAFTQADGKQVPPRAQSAHQMALCVEKNLIATLKQQPLRGFKYSDHGSLVNLSSYSTVGNLMGNLTSNTFFIEGRIARFMYISLYRMHQRAIHGSAKTFALWISEKVLRVVRPKMKLH
>NZ_CP011026.1|WP_010554994.1|139859_141788_+|RecQ-family-ATP-dependent-DNA-helicase
MTTPLIQSLEQHFGFSQFRTGQQQTIEQLLNGQSSLAIFPTGSGKSLCYQLTALHLPNLTLVVSPLLALMKDQISFLNSKGIYAASLDSSQDQMQSSTVMNDVRNGKIKVLMVSVERFKNERFREFISQVALSMLVVDEAHCISEWGHNFRPDYLKLPRYREELNIPLVLLLTATATKKVKRDMAERFAIAPECIVQTGFYRANLDLSVLSVKTADKNTELTNIVRAQNGPGIVYVTLQQSAEQVANVLSAQGVHAVAYHAGLEDTLRWQIQDDFMAGKINVVVATIAFGMGVDKSDIRFVIHYDLPKSIENYSQEIGRAGRDGNPSNCYTLANLDGLNTVENFVYGDTPELSGIEYVINDIRQSHQQWEMQEYSLSSESNIRQLALKTLLVQLEMQGAITPQYAYYADFKYKFLVDKNELLGHFDEQRQAFLTQIFSHTDFKKIWGTLNFDSLTQAAQVDRKRVVAALDYLAEKNLITLETKRITQVYKVHGEVINNPELAQQLHDYFTDKEQAEIKRIAALVRFFELQSCLSYNLARYFDDQNAPEQCGHCSVCRGHAVKLEYSIEPAYIDEQLIYQKVDEFLAHMAGKGNHNVGIETQCRFLAGMSVPLFARNKVRQLSGFALCEQMRYSDIKAKLLAR
>NZ_CP011026.1|WP_010554993.1|141833_142142_+|YkgJ-family-cysteine-cluster-protein
MPHIVIPVENISTTPEPVTCANCQACCCQLEVRIVTDTGVPFNYIEYDKWGSEVMKRADDGWCQALDRNTLMCSIYENRPLVCREFEMASGECITERDLAGI
>NZ_CP011026.1|WP_010554992.1|142213_143833_-|methyl-accepting-chemotaxis-protein
MTINMRLTTGFGVILSMMLILTIIGISRVSLINNNITHMTDVNSVKQRYAINFRGSVHDRAIAVRDVVLITDQSSLSTVLKSIKELNAFYQTSSRSMAELMGDMNSEERALINKINQIEQRTQPFIQGVINAKNAGNLNEAERILLTDARPAFTQWLNVINQFINLQEQANQTTTIDTLDIASSFKIWMISLTALAFLIGISVAYVISQLIRNSVGGEPQEAAEVIALIAQGDLRGDVQSCCPNSMMASVGVMQSKLKTIVDSIINSSEELSTHSASVASGSQQALSAADAQVTYTNSAVSSLEEMSRSIHAVADSVRQTEDNSKITAQLSQQGSIAVQKVAAEIEQISVTVKATVTQVNVLQEHVKHIGDILSVIRSISDQTNLLALNAAIEAARAGETGRGFAVVADEVRQLAQRTGDATGDIEKMILQVQENTQASVTAMETTVPQVENGLTLTHEANELLHQIQQQANDSLSNVLEIVESTSNQVATVAQISTDVEEIASMSKETSMSLNSNAQEAVALADLSNTLKKYISYFKV
>NZ_CP011026.1|WP_010554991.1|144056_144674_-|glutathione-S-transferase
MIKLHHLNKSRSKRVIWLLEELNVDYEIVAYQRNKDTFLAPDELKHIHQLGKSPVIEDGGLIIAESGAITDYLITKYGNGKFAPKVDTAEYVDYQQWLHFAESSAILPLLLKMFVLKDGAKTQFLEGYADAETAKVISYFNDRLEGKRYLVGDTLTGADFMMSFIVEIVKNSGQLAHFKNLVKYDEQLQSHEKFHTANELEAKYD
>NZ_CP011026.1|WP_010554990.1|144724_145753_-|NADP-dependent-oxidoreductase
MSTTSRQLTLESRPNGAPTDENFKLKTVELPALKDGEVLLRTIYLSLDPYMRGRMSDAKSYADPVNIGDVMVGATVCQVEESKNDKFRIGEWVLAYTGWQDYAITDGEGLMQLGKEPANPSYALGIMGMPGFTAYMGLLDIGQPKEGETVVVAAATGPVGATVGQIAKIKGCKVVGVAGGSEKCAHAVEKLGFDACIDHKADDFAEQLEKACDKGIDVYYENVGGKVFDAVLPLLNTAARVPLCGLVSQYNATSLPEGPDRLGMLMGQLLTKRIKMQGFIIFDDYGDRYDEFAQDMQKWLQDGKIQYREHMVEGIENTVDAFNDMICGKNFGKTVVKINKPL
>NZ_CP011026.1|WP_010554989.1|145932_146439_-|GNAT-family-N-acetyltransferase
MITLREFKAQDAPFIINTLNDEQVTRYLSSKIPFPYTQADADWWINQGSKNGVIDATAKAIEVNGQFAGCIGITPGEFEYSHSGEIGYWLNKAYWGQGIITRAIELICNEAFANSHINRIFGAVFAGNTGSMKALIKSGFEQEAVLKQAIYKNGMFYNNHIFSKLKAD
>NZ_CP011026.1|WP_010554988.1|146588_147794_+|anhydro-N-acetylmuramic-acid-kinase
MHPHIKALYNSAQKPSRLIIGLMSGTSLDGLDVALCKVTGAGLNTHIEVLNFTTVDYNDDYKTKIKQVFAKRECDLELVTLLHPWVGKLHGDMVNQCLHTWQINPASIDVIASHGQTIYHCPQSQHNHKSFTNGTLQIGDSDQIAVTTGITTIGDFRQKHIAAGGEGAPLAVYGDYLYFSSAVESRILLNMGGIANLTFLPKNGDANGVFSSDIGPGNTIMDAYVQQYFKGMHYDDGAKIAKAGKVNTPLLNALCNNAFFKLPMPKTTGPEVFNLAYLNAAQQLTNTHHLSHEDVMATLNTFTATVIANALNECAERVQNCVVYASGGGIHNPLLMAQLTVLCPRIKAFKNTDDLGINPDAKEAVLFAILANECLAGEQQHLSNTAQGIAGVTMGKVSFAD
>NZ_CP011026.1|WP_010554987.1|148101_148587_-|hypothetical-protein
MSTPLVQLTFALQSFDDSMSAAMSHAMEYEKLSLKANAAHNITLQCVLPDGANESDVISLSATQPSARGAQYFTEKTLSNADLESGTVNLTLSNITQSQCFVVQMMLHGKNTTLKESQQLDVYIKAFEQGYIPEQIKTEHTKSQGVRSYFASMGSTFLSLF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011026_1	1.1\|136562\|58\|NZ_CP011026\|CRISPRCasFinder	136562-136619	58	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	826462-826519	8	0.862

1. spacer 1.1|136562|58|NZ_CP011026|CRISPRCasFinder matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 8, identity: 0.862

gagcaaagcgcgatgtaaaatcgcacctacgggtttgttgagtgtggtgtttgagttg	CRISPR spacer
accaaaagcgcgatgtaaaatcgcacctacggttttgttgagtgtggtgtttacattg	Protospacer
.   **************************** *******************. .***

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011025_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011025_1

305366-305526

Orphan

Consensus_repeat	Method
CGATAAATGGGGGGTAACGTTACCCCCTGTATATTACCGTCAACGGTTGACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011025_1

>merge|NZ_CP011025|1|305366-305526|CRISPRCasFinder
CGATAAATGGGGGGTAACGTTACCCCCTGTATATTACCGTCAACGGTTGACGGATCAATTATCCACATAACAAATTTACTTTAATTTATTACCAACTCAAAAAATGTGGCGATAAAGGGGGGTAACGTTACCCCCTGTATATTACCGTCAACGGTTGACGG

>NZ_CP011025|1|1|305366-305526|CRISPRCasFinder
CGATAAATGGGGGGTAACGTTACCCCCTGTATATTACCGTCAACGGTTGACGG	ATCAATTATCCACATAACAAATTTACTTTAATTTATTACCAACTCAAAAAATGTG
GCGATAAAGGGGGGTAACGTTACCCCCTGTATATTACCGTCAACGGTTGACGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011025.1\|WP_010555441.1\|307982_308735_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011025.1\|WP_010555436.1\|302385_305271_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP011025.1\|WP_148664643.1\|307848_307989_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377183
NZ_CP011025.1\|WP_010555443.1\|310160_311021_-\|YicC-family-protein	unknown	unknown	gnl\|CDD\|236993
NZ_CP011025.1\|WP_010555442.1\|308727_309978_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271182
NZ_CP011025.1\|WP_010555439.1\|307428_307656_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225848
NZ_CP011025.1\|WP_010555004.1\|288727_289198_+\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP011025.1\|WP_024589451.1\|291402_292587_+\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NZ_CP011025.1\|WP_010555440.1\|307652_307886_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|283558
NZ_CP011025.1\|WP_007580132.1\|289225_291340_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP011025.1\|WP_007583381.1\|311932_312577_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_CP011025.1\|WP_002958890.1\|311200_311914_+\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NZ_CP011025.1\|WP_167381326.1\|296867_297527_+\|FRG-domain-containing-protein	unknown	unknown	gnl\|CDD\|214898
NZ_CP011025.1\|WP_010555433.1\|297540_299112_+\|type-I-restriction-modification-system-subunit-M	unknown	unknown	gnl\|CDD\|223363
NZ_CP011025.1\|WP_010555435.1\|300335_302330_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225420
NZ_CP011025.1\|WP_010555431.1\|294407_295343_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377369
NZ_CP011025.1\|WP_010555438.1\|306325_307231_-\|inovirus-type-Gp2-protein	unknown	unknown	gnl\|CDD\|371695
NZ_CP011025.1\|WP_010555434.1\|299108_300329_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341148
NZ_CP011025.1\|WP_010555437.1\|305631_306174_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011025.1\|WP_010555430.1\|293460_294384_+\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|224629

Protein	Function_ID	Function_description	E-value
NZ_CP011025.1\|WP_010555436.1\|302385_305271_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	3.955e-180
NZ_CP011025.1\|WP_148664643.1\|307848_307989_-\|hypothetical-protein	gnl\|CDD\|377183	pfam03979, Sigma70_r1_1, Sigma-70 factor, region 1.1. Region 1.1 modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase. Region 1.1 is also involved in promoter binding.	0.000925098
NZ_CP011025.1\|WP_010555443.1\|310160_311021_-\|YicC-family-protein	gnl\|CDD\|236993	PRK11820, PRK11820, YicC family protein.	3.739e-145
NZ_CP011025.1\|WP_010555442.1\|308727_309978_-\|site-specific-integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	7.56008e-42
NZ_CP011025.1\|WP_010555439.1\|307428_307656_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	6.89488e-07
NZ_CP011025.1\|WP_010555004.1\|288727_289198_+\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	1.15681e-107
NZ_CP011025.1\|WP_024589451.1\|291402_292587_+\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NZ_CP011025.1\|WP_010555440.1\|307652_307886_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|283558	pfam05930, Phage_AlpA, Prophage CP4-57 regulatory protein (AlpA). This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.	5.13377e-06
NZ_CP011025.1\|WP_007580132.1\|289225_291340_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP011025.1\|WP_007583381.1\|311932_312577_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	2.5279e-91
NZ_CP011025.1\|WP_002958890.1\|311200_311914_+\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	2.19928e-176
NZ_CP011025.1\|WP_167381326.1\|296867_297527_+\|FRG-domain-containing-protein	gnl\|CDD\|214898	smart00901, FRG, This domain contains a conserved N-terminal (F/Y)RG motif. It is functionally uncharacterised.	1.33057e-33
NZ_CP011025.1\|WP_010555433.1\|297540_299112_+\|type-I-restriction-modification-system-subunit-M	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	3.36995e-140
NZ_CP011025.1\|WP_010555435.1\|300335_302330_+\|transcriptional-regulator	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	4.30186e-23
NZ_CP011025.1\|WP_010555431.1\|294407_295343_+\|hypothetical-protein	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	0.000382453
NZ_CP011025.1\|WP_010555438.1\|306325_307231_-\|inovirus-type-Gp2-protein	gnl\|CDD\|371695	pfam11726, Inovirus_Gp2, Inovirus Gp2. Isoform G2P plays an essential role in viral DNA replication; it binds to the origin of replication and cleaves the dsDNA replicative form I (RFI) and becomes covalently bound to it via phosphotyrosine bond, generating the dsDNA replicative form II (RFII).	1.06612e-10
NZ_CP011025.1\|WP_010555434.1\|299108_300329_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341148	cd17259, RMtype1_S_StySKI-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to TRD2-CR2's of StySKI, S.EcoAI, S.EcoJA17PI, and S.EcoJA23PI. Salmonella kaduna CDC-388 S subunit (StySKI) recognizes 5'... CGATNNNNNNNGTTA ... 3' while Escherichia coli Type-1 restriction enzyme EcoAI specificity protein (S.EcoAI), Escherichia coli UCD_JA17_pb S subunit (S.EcoJA17PI) and Escherichia coli UCD_JA23_pb S subunit (S.EcoJA23PI) recognize 5'... GAGNNNNNNNGTCA ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	2.07458e-70
NZ_CP011025.1\|WP_010555430.1\|293460_294384_+\|restriction-endonuclease	gnl\|CDD\|224629	COG1715, Mrr, Restriction endonuclease [Defense mechanisms].	5.00144e-106

>NZ_CP011025.1|WP_010555436.1|302385_305271_+|type-I-restriction-endonuclease-subunit-R
MNYQSEQQLEDNLIAQLSEQGFTRVILKDNAALEANLKQQLEKVNGCTLSDTEFTQILGKLGKGNIFAKAKTLRDQLDVTLDNGDSRHLTLLCDEPQLNSFQVAQQITVKGTYTNRYDVTLLVNGLPLVQIELKRRGIELKEAFNQIKRYQKHSFHANHGLFNYVQLFVMSNGVNSQYFSNNSEMSAKQTFDWTDNENNKISQLHDFAEAFLTPSHLTHMLTKYIVLNETGKYLMVLRPYQFYAVEAIVEQVKTTTDNGYIWHTTGSGKTLTSFKAAQIMTSLSEVDKVVFVVDRKDLDYQTALEFNAFVKGSVDSTDNTSMLFHQLLDKPMKGRKVNQSRNTKLVVTTLQKLNNVVTKQRYLKEMQSLQDKRIVFIFDECHRSQFGDTHKNITEFFNNAQLFGFTGTPIFADNAVAKNSVKRTTKDLFGECLHPYVIVDAIRDANVLKFAIEYVGRYQYKDGSNNNLDIEVEDIDTKELLTSPARLDKITDYIIAQHNRKTHSREYNAMFCVSSVAELIQYYELFASKKTQGKHNLKIATIFSYEANEEEEYELGNDDAQIKEISAKYLNEGQTVKLHSRDKLDSFINDYNTMFGTSYSTKDSKLFEDYYKNISKRVKAKEIDILLVVNMFLTGFDAPKLNTLYVDKNLKYHGLVQAFSRTNRLLGETKSHGNIVCFRNLKKAADTAFTLFSNKQPKEYIETPSYNELLTDFNSAYEALMAITPTVDSVDALPDEEAQALFVRQFRELMRLKNMLSNFADFDMDSTSMGEQEFQDYTSKYADLGRQLRENSSKEKVSVLDDVDFELELLHSDIVNVTYILQLLRELHGEESTDEKARKRQVIANLIATDPTLLSKKALIDKFMDEHLQGIPASADVDEEFELYWEKEKRLELERFAQEQKLNQARLEKLVTRYELSDEMPLRDDFAEVLETKPSLLQRKKVLPIITDKFKRFVDTFMTGF
>NZ_CP011025.1|WP_010555435.1|300335_302330_+|transcriptional-regulator
MTNKINDNPIANIIDIQTLQESVEVECKLAGGRDGHGAVPNDMWETYSAFANTRGGVILLGIKERRGTFTVEGITNPAPLIKNIWDIVNNPNKVSVNLLSESDVRIEILEGKSIIAITVPRAPRESRPVFMNANPLNGTYQRRYEADQKCLPPAVNKMLAEQEEVRDNRILEHFTLDDIDPESLRIYRQMFVDAKPQHPFLELSDQEFLRSIRGWQQDRATGKAGLTLAGLVMFGKWDAIQDALPSFALDYQEKDDSTHRWIDRIYTDGSWSGNAFDFYRKVYRKLTADLKVGFSLTDDGQRQDTTPAHEAIREALVNTLAHAEFNTESNILIEKHPDFIGFRNAGLMRIPVHEAKAGGNSQCRNPAIHQMFLNIGLSEKAGSGIPKIYSNCKAQNWQPPHMYEKDELNQTFLELRMVNIVSPELDKRLTDTFGSGYKKLSELKRTILITAITESWFNHERICSLTSEHTREVTLALSQLVNAGYLESAGQHRGKIYHLKGIQIPTPDNDAGKSITFVASPKLDQLSLFEGPELNSEGPDLDTEGPELSNEGPDLALNTPDQDNTEVDTVAANELWSSLWVIGEQVRSASSRKQKSEVEQAIIALCKEAQPHCLRLGDIAQLLGMKPDTLRRNYLSKMVKEQVLFLAYPTIPNHPEQGYKLHKD
>NZ_CP011025.1|WP_010555434.1|299108_300329_+|restriction-endonuclease-subunit-S
MSEFKIAFTEQVKNFETSIGKLLEIKSGKGFKASEYSTKGRPLLQIENVGYGTIKWKAPSFLPEEYSLSEAELVLERGDIVLALNRPITNGQLKISKITAMDEGAILYQRVGKVISKGLANYDYLYHLLSIQVKKFVESKSIGSDQPFISIRELYQYPVVLPVCKNEQQKIADFLTSVDTKISQLTEKHRLLKDYKKGVMQQIFSQQIRFKDDDGNAFPDWNEYSLRDILILQADALKMDDEATYELITVKRGFGGIKSRGHFKGKDVLVKSQFTIHKGEFVISKRQIVHGACGLVPEELDGAIVSNEYNVFRPQPTKLDIDYFNRLSTTLYMRRAFFINSDGVHIEKLLFKTQSWLKTKVQLPCLKEQQKIAQFLQSLDKKIDAVNEQIEQTKLFKKGLLQQMFV
>NZ_CP011025.1|WP_010555433.1|297540_299112_+|type-I-restriction-modification-system-subunit-M
MVQQHQQELKKQLWNIANSLRGNMSADDFRDYILGLIFYKYLSDKLNTYANQLLSEDGIVFAKIDETTEEGQEYLEAVKEEALDKLGYFLKPAELFHVLAERGANDKFILDDVTNVLNHIEQSTMGADSADDFNGLFDELDLTSNKLGKTPDARNKLIAKVLEHLDNIDFHLESSEIDILGDAYEYLIGMFASGAGKKAGEFYTPQMVSKLLAKLVTLNNPHIKSVYDPTCGSGSLLLRVAKEANNPDLKFYGQEQNPSTYNLARMNMIMHDVHYTKFDIQNDDTLEVPAHLEQRFSAVVANPPFSADWSANPLHMNNERFADYGKLAPKGKADFAFVQHMIHQLDDNGTMAVVLPHGVLFRGAAEGHIRKHLIKEKNYLDMVIGLPANIFFGTSIPTCVLVLNKHRNADDNVLFIDASNHFEKGTNNNVMREEDLQRILDAVNKRDYIDKYAFAATQSDLAENDYNLNIPRYVDTFEDEVLVDLSEVAQQLVANDKAMLETDKTIAGFCDELGIEVPFEVKA
>NZ_CP011025.1|WP_167381326.1|296867_297527_+|FRG-domain-containing-protein
MKSFAELLSVFEKYNPKFTFFRGVVDKSFELRTTASRMNVKQDEIYKVEKAIFESFKQQAIPFLEFTPRDEWEWLALAQHHGLPTRLLDWSKNPLVSTYFAVEKELTKDAAIYVLTDRKEPFDTKDYSDPLELPNDEPVRRYIPPHLTGRIISQSGIFTVHNELNLPFYSGQIKKIIIPSRLKESFREQLYKFGVHKASIYPGLDGISDHIKWLETELK
>NZ_CP011025.1|WP_010555431.1|294407_295343_+|hypothetical-protein
MTIKAEAVLFIKLGSKGDYERECIEKEGTIKLDYKQIPHELCLSNNWDKVSEFVAMEYNTNKASTTSHRNQIKKFYTEPKTTMWITFYDCKLWYCFAEEEVLLDESSRTKSRKTVGGWRSVDSQNNSLFIQALSGKLTKVQGFRGTICDVKEKEYLLNKINNTQHPDVKNVETNLVSLKLSLEKIIQLLSPQDFEVFVDLIFRSSGWSRVGSAGNTIKTLDIELLAPVTGERAIVQVKSQSNLSLYKEYEERLNIEGYDRAFYVTHTPDKKLSDHINSMDKNNSIQVWDAEKLADLSVNAGLIEWLVSTVG
>NZ_CP011025.1|WP_010555430.1|293460_294384_+|restriction-endonuclease
MSLPDYQSFMTPLLQCLANGETVKLKEIEANVYQSIGLSVEQLKLRIPSGKQTYAYHRLSWAKTYLVKAGLIEQPKRAFCKITQKGLSALAAGELINNQYLSQYPEFLDFKTRTKDTSDSLDENTTSLVNSNSHKTPEELIEAAVDTLNTNLSDEILQAVLSASPAFFENLVVDLMLAMGYGGSRKDAGQATQYTQDGGIDGVIKEDKLGLEMIYLQAKRYTNKTVGRPDIQAFAGALDMHRAKKGVFITTSGFSKDALEYVGLIEKRIVLVDGKQLTELMLTHNLGVSTKQVFEVKALDSDYFIED
>NZ_CP011025.1|WP_024589451.1|291402_292587_+|elongation-factor-Tu
MAKEKFERVKPHVNVGTIGHVDHGKTTLTAAITNVLAKVYGGVAKDFASIDNAPEERERGITISTSHVEYDTPSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLSRQVGVPYIIVFMNKCDMVDDEELLELVEMEVRELLSEYDFPGDDLPLIAGSALKALEGEKEWEDKIVELANALDTYIPEPERDIDKPFIMPIEDVFSIQGRGTVVTGRVEAGIIRINDEVEIVGINDTTRSTCTGVEMFRKLLDEGRAGENIGALLRGTKREDVERGQVLAKPGSINPHTTFTSEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGDVQLPDGVEMVMPGDNIKMTVTLIAPIAMDEGLRFAIREGGRTVGAGVVATIVA
>NZ_CP011025.1|WP_007580132.1|289225_291340_+|elongation-factor-G
MARTTPLERYRNIGIVAHVDAGKTTTTERVLFYTGLSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGMDAQFDAHRINIIDTPGHVDFTIEVERSLRVLDGAVVVLCASSGVQPQTETVWRQANKYEVPRMIFVNKMDRTGADFLAVVSQVKSRLGATPVPIQLPVGAEDDFKGVIDLIKMKVINWNEADQGMTFSYEAIPAELLELAEEWRSHLVESAAEATEELMDKYLEGEELSEAEIKNALRQRTLANEIVPVTCGSAFKNKGVQAVLDCVVEYMPSPEQVKQIQGILENGTEEERPANDKAPFAALAFKIATDPFVGTLTFFRVYSGTVKQGDTVYNPVKSKRERLGRIVQMHSNSREEIKEVFAGDIAAAIGLKDVTTGETLCDPNSIITLERMEFPEPVISIAVEPRTIADQDKMGIALGKLAAEDPSFRVQTDEESGQVIISGMGELHLDIIVDRMKREFSVECNVGKPQVSYREAIRSTVKVEGKFIRQSGGRGQYGHVWIKLEPMDITDDESPIYEFVNETVGGSVPKEFVPAVDKGIQEQMSQGVLAGYPLLGVKATLYDGSFHDVDSNEMAFKIAGSLAMRDGALKANPVLLEPVMKVEVLTPDSNMGDVVGDLNRRRGIIEGMEDALGGLKQINAQVPLSEMFGYATALRSATQGRASYSMEFVKYAEASKNVADTIISARAVI
>NZ_CP011025.1|WP_010555004.1|288727_289198_+|30S-ribosomal-protein-S7
MPRRRVIGQRKILPDPKFGSELLAKFVNIVMLDGKKSTAEKIVYGALDVAAEKSGKSHLEIFETALDNIRPQVEVKSRRVGGSTYQVPVEVRPVRRNALGMRWLVDAARKRGEKSMGLRLAQEIVDASDNKGTAVKKREDVHRMAEANKAFAHYRW
>NZ_CP011025.1|WP_010555437.1|305631_306174_-|hypothetical-protein
MSKFDLESLPKCGAKTRSGNPCKRLGNKRNGRCKLHGGRSTGAKTIEGKLAVRTNPIKNGAGWNVIQGYDPELSEYSIEAYLQLFDMAKLNNTDSSELNALIAQHRVALECFKYRVLEYYGADSFIIIQSALDAHYKDIDSQHLHFHIHTKVVKAPYFHQRMSEARKQFLLINKAFKFNW
>NZ_CP011025.1|WP_010555438.1|306325_307231_-|inovirus-type-Gp2-protein
MTFKISTTNSVNFIYKDHSYRVFKPKTKGQDLKALTKVFKHCECMLSHYSKVLVARIDLSTKSYSINNQMFLKFIKKQLSILTKQYNCKVSYICARERNTSSNHHYHLAVLLSGHKIKHSSKLTYQLKHAWESDGLGSASLVSHPYYLMQRGNKLTIEPALYRLSYFTKRATKEANIKAHSYLFSKLEYSTEHVDRCFNDIMLVNPAITYQGNKEAALIKQDNSEAGGIKLLKRLSGISSTQLIQSKLHRSLQYSDHPNQVNNDQVPLQHSMNRNIHMQGDRSPYANRQHKPLFSDRFTWH
>NZ_CP011025.1|WP_010555439.1|307428_307656_-|helix-turn-helix-domain-containing-protein
MNEKKLPDLAMYIDDARMIKKPELQKLLNISRSTLGRWIKAGHFPPPAHVINGRSMWHFQDYKNWLAKKHTKAGK
>NZ_CP011025.1|WP_010555440.1|307652_307886_-|AlpA-family-phage-regulatory-protein
MSQLTTPTTQFTDRLVREAERAKITAVSRTSAWALEKKGLFPKRRKLHADSDRVCWLLSELLDFVKSREVINMERTQ
>NZ_CP011025.1|WP_148664643.1|307848_307989_-|hypothetical-protein
MLKSLISPYQAKGLLTYTQINNILPSTMMNRRNQFEPANNTNNAIY
>NZ_CP011025.1|WP_010555441.1|307982_308735_-|hypothetical-protein
MNKFELFPKCTPREGLKIQSQPFLVHVQELGEIDEDDINYAQLEEIASPVGIEKPNLIISSINNLPKDEFGQDIMLLEKEAIKRKAMLVEDTLRALPDKSNVDYKFWLNKLMHEMFTLGSRVQEHNDFVEHLYALRATEKHSKDRTIAGESSPKKYQPFIDLINVIVSDIKLHTHMSKCSRANLATAIDALFSINTISPPSHKTIKTYINDAYGSTAKKGRKSNSAPSLKEVEEWVKTNYKDKIHLKSKC
>NZ_CP011025.1|WP_010555442.1|308727_309978_-|site-specific-integrase
MNVKEIKANIKSCKTLRFSVGDSLYIKPSKDKKSGAWELRYTINNKRHFMTLKGSNFPDKTLSDARIEAALINKKIKNGIDPLAERVRQGQETIITMNDLFNDWFKDKSKEVKNPHLLERQYTKDIKPYIGKLKIDDVNARDIRAIIKEVVNDGRPSISTKCLNLCKNLFKHAQKLDLTKSNPAAAFSQSDAGGQTKSRKRALSLQEIESTFDVLRENSTVFTRDNYLAMVLLLVFGNRKTEVTQAKWEEFDFNEKIWNLGTRNKKEVYIQIPIADEVIPIFEELKRKSCGSEYVFPARKVSKDGHMCENTLNHALAKMFGKSISKKSYPNLLEPKGIKHFTIHDLRRTCRSLFAELGYEGNDVTRYLNHTISGVAGIYNRYDYLDERRKLASVMANQILPRAKISMMSEGINLNE
>NZ_CP011025.1|WP_010555443.1|310160_311021_-|YicC-family-protein
MIHSMTAYARREIKGDWGTGTWEVRSVNQRYLETFIRAPEQFRGMEPVIRERLRKHLQRGKVEVFLKFVANPAHVGELSINQALAEQLINSSKWVQQQSNGDINPVDILRWPGVMEAEELDMDSVNTALIAGLDQVIEDFKSARGDEGANLEEMIAIRLDAILEQVEIVETHMPEIAKWQREKLAQKLEDLTANIDESRLEQELIYLAQKQDVAEELDRLKSHVKETKKILKKGGACGRRLDFMMQEFNREANTLASKSINSDITTAAVELKVLIEQMREQIQNIE
>NZ_CP011025.1|WP_002958890.1|311200_311914_+|ribonuclease-PH
MRPSERTPNQIRPVTFTRNYTLHAEGSVLVEFGNTKVLCTATVESGVPRFMKGQGKGWINAEYGMLPRATHTRNAREAARGKQGGRTMEIQRLIARALRAAVDLKALGENTITIDCDVIQADGGTRTASISGACVALVDALTHMRAKGMINSNPLKHMIAAISVGIYKGQAISDLEYIEDSAAETDMNVILTETGKIIEIQGTAEGEPFSFDELDELLTLAKHSIREIIDVQKQALA
>NZ_CP011025.1|WP_007583381.1|311932_312577_+|orotate-phosphoribosyltransferase
MKDYQKEFIEFALEKQVLKFGEFTLKSGRISPYFFNAGLFNTGRDLARLGRFYASALEDSAIEYDVLFGPAYKGIPIATTTAVALADHHDKDVPYCFNRKEKKAHGEGGTLVGSELNGKIMLVDDVITAGTAIRESMEIIAQNGADLSGVLIALDRQEKGKAELSAIQEVERDFNTKVISIVKLADLISYLENQGTMGEHLASVKAYRDQYGVA

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Crispr_ID: NZ_CP011025_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011025_2

663874-663980

Orphan

Consensus_repeat	Method
GTCGCGCACCAACGTAAAATAACTGAAGAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP011025_2

>merge|NZ_CP011025|2|663874-663980|CRISPRCasFinder
GTCGCGCACCAACGTAAAATAACTGAAGAAGTGAAAATGCGGTACTAGCTCAGTTGCTAGAATGTTGAACGCGACCTGTCGCGCACCAACGTAAAATAACTGAAGAA

>NZ_CP011025|2|2|663874-663980|CRISPRCasFinder
GTCGCGCACCAACGTAAAATAACTGAAGAA	GTGAAAATGCGGTACTAGCTCAGTTGCTAGAATGTTGAACGCGACCT
GTCGCGCACCAACGTAAAATAACTGAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011025.1\|WP_010554259.1\|668776_668983_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_CP011025.1\|WP_002960781.1\|656198_656393_+\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|180768
NZ_CP011025.1\|WP_050576424.1\|661121_661949_-\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|234591
NZ_CP011025.1\|WP_010555273.1\|657200_658736_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238574
NZ_CP011025.1\|WP_007580267.1\|665632_666070_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|183251
NZ_CP011025.1\|WP_080671213.1\|669557_670070_+\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP011025.1\|WP_010555272.1\|656398_657190_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NZ_CP011025.1\|WP_010555270.1\|653122_655075_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP011025.1\|WP_007580269.1\|666165_666786_+\|MarC-family-protein	unknown	unknown	gnl\|CDD\|225006
NZ_CP011025.1\|WP_084201275.1\|666867_667842_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|236991
NZ_CP011025.1\|WP_007585019.1\|663183_663729_+\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NZ_CP011025.1\|WP_010554262.1\|670078_671065_+\|DUF2333-family-protein	unknown	unknown	gnl\|CDD\|378387
NZ_CP011025.1\|WP_010554254.1\|664664_665093_-\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|223509
NZ_CP011025.1\|WP_010555274.1\|658771_659521_+\|HesA/MoeB/ThiF-family-protein	unknown	unknown	gnl\|CDD\|238386
NZ_CP011025.1\|WP_010555271.1\|655180_656191_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274092
NZ_CP011025.1\|WP_010554258.1\|668086_668767_+\|phage-shock-protein	unknown	unknown	gnl\|CDD\|274372
NZ_CP011025.1\|WP_010554253.1\|662003_663062_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|237039
NZ_CP011025.1\|WP_096058047.1\|659791_660775_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP011025.1\|WP_010554260.1\|669154_669481_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011025.1\|WP_007580265.1\|665089_665557_-\|chemotaxis-protein-CheX	unknown	unknown	gnl\|CDD\|381734

Protein	Function_ID	Function_description	E-value
NZ_CP011025.1\|WP_010554259.1\|668776_668983_+\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	2.72737e-11
NZ_CP011025.1\|WP_002960781.1\|656198_656393_+\|sulfur-carrier-protein-ThiS	gnl\|CDD\|180768	PRK06944, PRK06944, sulfur carrier protein ThiS; Provisional.	3.01958e-14
NZ_CP011025.1\|WP_050576424.1\|661121_661949_-\|phosphatidylserine-decarboxylase	gnl\|CDD\|234591	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed.	0
NZ_CP011025.1\|WP_010555273.1\|657200_658736_+\|thiamine-phosphate-synthase	gnl\|CDD\|238574	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.	1.71578e-98
NZ_CP011025.1\|WP_007580267.1\|665632_666070_-\|transcriptional-repressor	gnl\|CDD\|183251	PRK11639, PRK11639, zinc uptake transcriptional repressor Zur.	9.21085e-51
NZ_CP011025.1\|WP_080671213.1\|669557_670070_+\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	3.479e-40
NZ_CP011025.1\|WP_010555272.1\|656398_657190_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	3.41151e-156
NZ_CP011025.1\|WP_010555270.1\|653122_655075_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP011025.1\|WP_007580269.1\|666165_666786_+\|MarC-family-protein	gnl\|CDD\|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	1.50568e-38
NZ_CP011025.1\|WP_084201275.1\|666867_667842_+\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|236991	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA.	0
NZ_CP011025.1\|WP_007585019.1\|663183_663729_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	2.06825e-131
NZ_CP011025.1\|WP_010554262.1\|670078_671065_+\|DUF2333-family-protein	gnl\|CDD\|378387	pfam10095, DUF2333, Uncharacterized protein conserved in bacteria (DUF2333). Members of this family of hypothetical bacterial proteins have no known function.	0
NZ_CP011025.1\|WP_010554254.1\|664664_665093_-\|YjbQ-family-protein	gnl\|CDD\|223509	COG0432, COG0432, Uncharacterized conserved protein [Function unknown].	2.08161e-59
NZ_CP011025.1\|WP_010555274.1\|658771_659521_+\|HesA/MoeB/ThiF-family-protein	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	3.22267e-100
NZ_CP011025.1\|WP_010555271.1\|655180_656191_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	8.35811e-65
NZ_CP011025.1\|WP_010554258.1\|668086_668767_+\|phage-shock-protein	gnl\|CDD\|274372	TIGR02977, phage_shock_protein_A, phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	6.16267e-56
NZ_CP011025.1\|WP_010554253.1\|662003_663062_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|237039	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA.	0
NZ_CP011025.1\|WP_096058047.1\|659791_660775_+\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	3.81408e-20
NZ_CP011025.1\|WP_007580265.1\|665089_665557_-\|chemotaxis-protein-CheX	gnl\|CDD\|381734	cd17906, CheX, chemotaxis phosphatase CheX. This family contains CheX CheY-P phosphatase which is very closely related to CheC chemotaxis phosphatase; both dephosphorylate CheY, although CheC requires binding of CheD to achieve the level of activity of CheX. CheX has been shown to be the most powerful CheY-P phosphatase of the CheC-FliY-CheX (CXY) family. Structural and functional data of CheX and its CheY3 substrate in Borrelia burgdorferi (the causative agent of Lyme disease) bound to the phosphoryl analog BeF3(-) and Mg2+ reveal a unique mode of binding, but a catalytic mechanism which is virtually identical to that used by the structurally unrelated CheZ, providing a striking example of convergent evolution. Thus, CheX is quite divergent from the rest of the CXY family; it forms a dimer and some may function outside chemotaxis. The data also suggest a possible CheX regulatory mechanism through dissociation of the CheX homodimer.	5.49431e-54

>NZ_CP011025.1|WP_007585019.1|663183_663729_+|oligoribonuclease
MTINKSNLIWLDLEMTGLEPETDKILEIATVVTDADLNILAEGPTIAIHQSDELLNGMDEWCTTQHGKSGLTARCKASTFDEAYAVEQTLAFLKQWVPAGTSPMCGNSIGQDRRFMNKYMRELEDFFHYRNLDVSTIKELARRWKPEVLAKVNKKGSHLALDDIKDSIMELKVYRENFFNL
>NZ_CP011025.1|WP_010554253.1|662003_663062_-|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MAKQKKLSKGQSRQIKANHQKRINSADSRPAKKGAQEWQTDNLGQVESAIVISRFGQHADVETENGDVLRCNIRRTVSNLVCGDEVLFRRAKVSEGDLAGVIEATQERRSQLTRPDFYDGVKVIAANIDQILMVSAVLPEFTPSIIDRYLIACEDMGIEPILVLNKTDLIDEAGLNEIQKVLDIYRKLDYQVLLVSNISGDGIDKLKEVLVDKNNIFVGQSGVGKSTLVNTVLPNAEILTKEVSENSGLGQHTTTVSRLHHLPSGGNLIDSPGIREFGLWHLDVERVTWCFKEFREFIGGCRFRDCKHLNDPGCIVKEAVADGRISQLRFDSYHRILETMADGRAGARAPRV
>NZ_CP011025.1|WP_050576424.1|661121_661949_-|phosphatidylserine-decarboxylase
MPKHFISRVVGKLAAAKAGALTTTLIKLFIKQYKVDMSEAQYPDPAHYKSFNEFFTRPLKEGMRPMVEDSNIIIHPVDGAISQLGDIVDGQLIQAKGHDYSLQALLGGSQDDTTPFLGGKFATIYLAPKDYHRIHMPVDGTLSKMIYVPGDLFSVNPLTAQNVPNLFARNERVVAIFETEIGPLAMVLVGATIVASIETIWAGTVTPPAGSDVFSWKYPTTGDNAITLKKGEEMGRFKLGSTVVLAWGADKAEILDDQLPEVVTRLGTAFAKIND
>NZ_CP011025.1|WP_096058047.1|659791_660775_+|IS110-family-transposase
MMFIGIDISKEKIDLSWLRDQLTNKIKTKVFKNKRQDFVTIEKWLLNTTKSAASELVITLEPTGVYHEALMYFLHEQGFNIILANPGKAKKYADALNIIHKTDKSDATMLAHYGCAKHAVVNYWQPEALEIRELKALIRRLDALESNRQREANRLEASEFSNVSARVCQSIKVTIAFLDDEIKQLKSDIDNHIDNEPDLKRNRKLLESIPGIGPVLSRELTYLFAAKKFNKAKEAAAYCGLIPRHNESGKLKGRTSISKLGPARIRCKLYMAAIVAGQWNKTIKRHKLTLINNGKTPMQAVCANMRKLIHICFGVIKNQEAFKLQES
>NZ_CP011025.1|WP_010555274.1|658771_659521_+|HesA/MoeB/ThiF-family-protein
MNELSEKETLRYSRHLLLEEVGLEGQLALKSSTVAVVGAGGLGSPALLYLAAAGIGTLILIDDDEVELSNLQRQVLYKINHLGQNKVAAAGKVLASLNNQIDIVTHCQKLDENNAVNMLKGADIVLDCSDNFSTRYCVNRYCIANKTPLISGAALATKGQLMGFDFRQSDSPCYGCVFPQSEATPVINCSNAGVISPLLGVIGSMQAQLTLNLLLGHLSGCVFITFDALTLKQQHFKVIKDSECKECGK
>NZ_CP011025.1|WP_010555273.1|657200_658736_+|thiamine-phosphate-synthase
MNNVVWTIAGSDSGGGAGIQADIKAMQSFGVHGCTAITALTAQNSLGVEAINAVSTDIIESQLLALEKDMKAKVIKIGMLANVQQIQLISEHISHYKAKWPVPPVIVYDPVAIASSGDLLTEEDTVSAIKECLLPLVDVITPNTHETQLLTGVYLIGPAAIKEAANKLLSWGAKAVVIKGGHWDYPSGYCIDYCIDSNTQSGEEYWLGNQKIQTPHNHGTGCSMASVIAACLAKDYPLKDAFILAKAYINQGLKQSVRYGEGIGPVAQTSFPTNLADYPQVIEPGSWLGDELDFDVPLDFNMAADFAPCESKSLGLYAVVNSTDWLEKCLQQGIKTAQLRVKNKTQDELDELIKQAVELGKQYNAQVFINDYWQLAIKHGAYGVHLGQEDLEIANLAAIKDAGLRLGLSTHGFYEMLRAHNYRPSYMAFGAIYPTTTKDMTGQIQGLEKLIKFVPLMQSYPTVAIGGIDLSRAEQVAKTGVGSVAVVRAITEADNYVEAISALQVAISSAH
>NZ_CP011025.1|WP_010555272.1|656398_657190_+|thiazole-synthase
MQTKDCLTIYGEQIKSRLLIGSALYPSPDIMTQSIVASGAEIVTVSLRRQQSAAAGDDFWQLIKNTGLKILPNTAGCHSVKEAITLAKMCREVFATDWIKLELIGDDYNLQPDPFALLEATKILINDGFKVLPYCTDDLVLCQRLNELGCEVLMPWGAPIGTGKGLLNSYNLKTIRERLPDTTLIVDAGLGLPSHACQALEMGYDAVLLNSAIAGAGCPITMSRAFKAAVEAGRFAYKAKAMPEKDVAAPSTPTMGMPFWHQQ
>NZ_CP011025.1|WP_002960781.1|656198_656393_+|sulfur-carrier-protein-ThiS
MNITINGELLNVNSKALVEVLQSFGAVAPFAVAVNGEFIPQSRHSNYVLNEGDSVELLSPIQGG
>NZ_CP011025.1|WP_010555271.1|655180_656191_+|FAD-dependent-oxidoreductase
MFYNIAVVGFGLAGRLAALELSKLHHVTVFEADDEHTQNSAGKVAAAMIAPLAESVLCEADLALMGLDSMKRWPGIIAELESEVFFQQQGTLVIAHQQDKGDLQSFAQRIKPLAEHTAEHINAQQITMLEPELAGRFNQGLFLPCEGQIDNQAFYKASFAQLNKRKVKFVFNQRVTISDNKINNRPFDYIIDCRGLGAKNTQDDKPLRGVRGEVARLYAPEVSLIRPVRLMHPRYPIYIAPKPNSEYVIGATEIESQDSGAATVRSTLELLSAAYTVHSGFAEARLLSIQTGLRPAFSNNRPEVSQVGNVISINGLYRHGYMLAPALVAQAVSRIE
>NZ_CP011025.1|WP_010555270.1|653122_655075_+|phosphomethylpyrimidine-synthase-ThiC
MSNTTNKASRRETRAAASEYIYNLTGQPFPNSHKVYVEGTQPGVRVGMREITLSDTFIGGTDENPVYESNDPLRVYDTSGPYTDPNFELDVRKGLPKFREQWIESRGDTEVLESVTSQFSQQRMADEGLDHIRFDHLPKIRRGVAGKNVTQMHYARQGIITPEMEYVAVRENMGRAEIRKELLAAQHKGESFGASIPEFITPEFVRDEIARGRAILPNNINHPETEPMIVGRNFLVKVNANIGNSSVSSSIEEEVEKMVWSTRWGADTVMDLSTGRYIHETREWVVRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPMTAKRVTGIVSRGGSIMAKWCLAHHKENFLYTHFEDICEILKQYDVCFSLGDGLRPGSIADANDEAQFSELRTLGELTKIAWKHDVQVFIEGPGHVPMHMIKANMDEQLEHCGEAPFYTLGPLTTDIAPGYDHITSGIGAAQIAWYGCAMLCYVTPKEHLGLPNKEDVKEGLITYKIAAHAADLAKGHPGAQERDNALSKARFEFRWHDQFNIGLDPDRAREYHDETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAKDLETRGIDPNDAGEAIEIKMIDVEAEMKAKSAQFKQTGSEIYHKAV
>NZ_CP011025.1|WP_010554254.1|664664_665093_-|YjbQ-family-protein
MSWQQKQITLKPRQRGFHIIDDEILSQLPELASYKIGLLHLFIQHTSASLTINENADPTVRMDMESHFNKFVPERQPYYRHDYEGDDDMPAHIKTSTLGCELSIPISNGYLALGTWQGIYLGEHRDSGGSRRVIATIQGELF
>NZ_CP011025.1|WP_007580265.1|665089_665557_-|chemotaxis-protein-CheX
MNVEFINPFLSSLINVLSTMAQTQLKPGKPRIKTDEIACGDVSGLIGMVGPQTRGSFSITFDEGLALTIMERMLGERPDTIDEEVTDMVGEITNMVTGGAKNLLGEKGFDFDMATPIVVSGKGHTITHKSQGKKIIMPFSCDAGNANIEVSFDKL
>NZ_CP011025.1|WP_007580267.1|665632_666070_-|transcriptional-repressor
MNIESLVSKAKQVCDNRGARFTPIREKVFRLLASAQGGVGAYDLLEQLKVTETGAKPATIYRALDFLAELGFIHKIESTNAFMLCHHFDHIHPVQLLICDTCGFVKELHSSVISHELNNLAAEGGFVVSGQTIEAHGKCESCRAS
>NZ_CP011025.1|WP_007580269.1|666165_666786_+|MarC-family-protein
MHELLAIFIFFFAVIDPIGTVPVFIAVTRGDDEKFKRKVIFKAVGVSALVLLFFVLAGEQLLNAIEIPLSAFQIAGGIILLIFALSMIFGESKPEAEIKSVRDSTETAIFPLAIPSIASPGAMLGAVLMTRNEEYTWVEQLLTSSMMLAVLAVVLVLLLLATHVHRLIGDSGASIISRIMGLILSSVAVTNILNGIAHYFGLQVFS
>NZ_CP011025.1|WP_084201275.1|666867_667842_+|tRNA-dihydrouridine(20/20a)-synthase-DusA
MNKCTLDRRFSVAPMLDWTDRHCRTFHRKMTIHTVLYTEMITTGAILFGRGDYLHFNKHEGPVALQLGGSDPKALAQCAKLAGERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVAECVAAMKSEVSIPVTVKTRIGIDEQDSYEFLCALIEASHKVGCDDFIIHARKAWLNGLSPKENREVPPLDYPRVYQLKKDYPQLDLSLNGGVKTIEQSLEHLQHIDGVMIGREAYSNPFMLNDVDEKIYGDAANTQSRHDVVRSMYDYIEEEMRLGANFWHIARHMLGIFQGQPGARGFRRHLSESGHGKQADLSVMDKALSFVPE
>NZ_CP011025.1|WP_010554258.1|668086_668767_+|phage-shock-protein
MGIFNRVNDVIQSNIVAMLDKAEDPEKLLNLMLTEMQDALNESRSTAAALLCEEKVINRQIDTKKTELAAWQIKAERAVEKGSDDLAKSALLEKQRVNESIENKQTQLETLQESIGKIKSDCERLQQKMAMAKTKQAQLMQRHNVAIARGRISTQLQSDKVAHALSRFEQIEQRVEGIEAQVEAYELTDTASSTSAQIESLVKNEKIDAELARLKANLNTNLKHTA
>NZ_CP011025.1|WP_010554259.1|668776_668983_+|PspC-domain-containing-protein
MNSFNRQRGWYKDTLNKKISGVCSGLARRLDFPVWATRVVTILLFLSFPFAIALGYFIAHCCLENKEY
>NZ_CP011025.1|WP_010554260.1|669154_669481_+|hypothetical-protein
MKALAVCVIIYLLLFTDLITFVQIDSWQLPLWIADISWAGLELVGALAAIVAVVAVVALITMGLVGAGVVALAGTVLALLFGSIMIAWPLLFVAVLCWLVADNKKVAS
>NZ_CP011025.1|WP_080671213.1|669557_670070_+|copper-chaperone-PCu(A)C
MMTKLCFSMASALIFSFFSSSLAAHSGHDHGSDVAVLEVTNAQVREFLPGSTSTVGYLTLINHSGAAATLTKATIDGLGRVEIHEHSHVDGMMKMQQVESVEIKAHESVSFQPGGYHLMVFEPQEPLKVGQERKLTLYFSDGNRLFTNAQVVSLEAQATQSKPSTQHAHH
>NZ_CP011025.1|WP_010554262.1|670078_671065_+|DUF2333-family-protein
MSQHKGKIAGIVVLLLIIFYAIAVYWSTEPSRFDVVANAKEQAQLRNEKIVTGYVTTSTLITVANTLLDKPGGYLSNDVIPPSIIMDDMPAWEYGALEMVRDLSLSMRKDFSRSQSQSTEHEALKKAQPQFNISSEAWAWPSAEGEYQKGIDYLMVYRGQIANEHERDSQFYARADNLRSWLKEAEKRLGSLSQRLSASVGQEKVNTDLAGNSSNKQATLAPLQQQVRTPWLEIDDVFYESRGATWALLHFLQAIEYDFNDVLEKKNARVSVQQIIRELEATQETVWSPLILNGNGFGYVANHSLVMANYISRANAALIELSELLAQG

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Crispr_ID: NZ_CP011025_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011025_3

1300625-1300788

Orphan

Consensus_repeat	Method
AAACGATAGATTTCGTGGGTTTGCCAAGATGGCTATGGATATTGCAGGATGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011025_3

>merge|NZ_CP011025|3|1300625-1300788|CRISPRCasFinder
AAACGATAGATTTCGTGGGTTTGCCAAGATGGCTATGGATATTGCAGGATGCAAAAAGTGGCAGGAGCTACTTAAAAGGATTACCAGGGATGATGCTACAGTATGTAGCCAAACGATAGATTTCGTGGGTTTGCCAAGGTGGCTATGGATATTGCAGGATGCAA

>NZ_CP011025|3|3|1300625-1300788|CRISPRCasFinder
AAACGATAGATTTCGTGGGTTTGCCAAGATGGCTATGGATATTGCAGGATGCAA	AAAGTGGCAGGAGCTACTTAAAAGGATTACCAGGGATGATGCTACAGTATGTAGCC
AAACGATAGATTTCGTGGGTTTGCCAAGGTGGCTATGGATATTGCAGGATGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011025.1\|WP_010553675.1\|1308350_1308992_-\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
NZ_CP011025.1\|WP_010553686.1\|1297313_1297853_+\|SecY-interacting-protein	unknown	unknown	gnl\|CDD\|319993
NZ_CP011025.1\|WP_010553687.1\|1296408_1297254_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|236986
NZ_CP011025.1\|WP_010553688.1\|1295461_1296349_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|365914
NZ_CP011025.1\|WP_002958240.1\|1299066_1299303_-\|DUF2789-domain-containing-protein	unknown	unknown	gnl\|CDD\|378527
NZ_CP011025.1\|WP_010553689.1\|1291739_1295429_+\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_CP011025.1\|WP_010553683.1\|1301261_1302290_-\|DUF3549-family-protein	unknown	unknown	gnl\|CDD\|378801
NZ_CP011025.1\|WP_010553680.1\|1303471_1303921_+\|flavodoxin	unknown	unknown	gnl\|CDD\|181230
NZ_CP011025.1\|WP_010553677.1\|1306973_1307606_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
NZ_CP011025.1\|WP_010553682.1\|1302394_1302715_+\|YqcC-family-protein	unknown	unknown	gnl\|CDD\|377282
NZ_CP011025.1\|WP_008169301.1\|1299456_1300110_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NZ_CP011025.1\|WP_010553681.1\|1302707_1303472_+\|tRNA-pseudouridine(65)-synthase-TruC	unknown	unknown	gnl\|CDD\|182971
NZ_CP011025.1\|WP_010553684.1\|1298703_1298970_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011025.1\|WP_010553676.1\|1307655_1308354_-\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
NZ_CP011025.1\|WP_010553690.1\|1290012_1291740_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_CP011025.1\|WP_010553685.1\|1297916_1298690_-\|Zn-ribbon-containing-protein	unknown	unknown	gnl\|CDD\|370804
NZ_CP011025.1\|WP_007378192.1\|1289463_1289799_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|377727
NZ_CP011025.1\|WP_002962268.1\|1308988_1310047_-\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
NZ_CP011025.1\|WP_010553679.1\|1304458_1306369_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|224893
NZ_CP011025.1\|WP_002963032.1\|1300961_1301261_-\|DUF3301-domain-containing-protein	unknown	unknown	gnl\|CDD\|378706

Protein	Function_ID	Function_description	E-value
NZ_CP011025.1\|WP_002962268.1\|1308988_1310047_-\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
NZ_CP011025.1\|WP_010553686.1\|1297313_1297853_+\|SecY-interacting-protein	gnl\|CDD\|319993	cd16323, Syd, Syd, a SecY-interacting protein. This family contains the Syd protein that has been implicated in the Sec-dependent transport of polypeptides across the inner membrane in bacteria. Syd has been shown to bind the SecY subunit of membrane-embedded SecYEG heterotrimer (also known as core translocon or SecY complex) which is a conserved protein-conducting channel essential for the biogenesis of most of the secretory and integral membrane proteins. The SecY-binding site of Syd is a conserved concave and electronegative groove that forms interactions with the electropositive loops of the SecY subunit. Syd is also known to verify the proper assembly of the SecY complex in the membrane by interfering with protein translocation only when the channel displays abnormal SecY-SecE associations. Operon analysis has shown that Syd protein may function as immunity protein in bacterial toxin systems.	5.24322e-72
NZ_CP011025.1\|WP_010553687.1\|1296408_1297254_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|236986	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.	6.50719e-178
NZ_CP011025.1\|WP_010553688.1\|1295461_1296349_+\|peptidylprolyl-isomerase	gnl\|CDD\|365914	pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD. The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilized in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function.	3.33592e-28
NZ_CP011025.1\|WP_002958240.1\|1299066_1299303_-\|DUF2789-domain-containing-protein	gnl\|CDD\|378527	pfam10982, DUF2789, Protein of unknown function (DUF2789). This bacterial family of proteins has no known function.	1.00958e-30
NZ_CP011025.1\|WP_010553689.1\|1291739_1295429_+\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	1.25151e-164
NZ_CP011025.1\|WP_010553683.1\|1301261_1302290_-\|DUF3549-family-protein	gnl\|CDD\|378801	pfam12069, DUF3549, Protein of unknown function (DUF3549). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.	1.28337e-158
NZ_CP011025.1\|WP_010553680.1\|1303471_1303921_+\|flavodoxin	gnl\|CDD\|181230	PRK08105, PRK08105, flavodoxin; Provisional.	1.52703e-71
NZ_CP011025.1\|WP_010553677.1\|1306973_1307606_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	6.96151e-128
NZ_CP011025.1\|WP_010553682.1\|1302394_1302715_+\|YqcC-family-protein	gnl\|CDD\|377282	pfam04287, DUF446, tRNA pseudouridine synthase C. This family is suggested to be the catalytic domain of tRNA pseudouridine synthase C by association. The structure has been solved for one member, as Structure 2HGK, which by inference is designated in this way.	1.52804e-34
NZ_CP011025.1\|WP_008169301.1\|1299456_1300110_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	0.00645049
NZ_CP011025.1\|WP_010553681.1\|1302707_1303472_+\|tRNA-pseudouridine(65)-synthase-TruC	gnl\|CDD\|182971	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.	2.79269e-129
NZ_CP011025.1\|WP_010553679.1\|1304458_1306369_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	4.53572e-124
NZ_CP011025.1\|WP_010553676.1\|1307655_1308354_-\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	3.49048e-131
NZ_CP011025.1\|WP_010553690.1\|1290012_1291740_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	8.64223e-119
NZ_CP011025.1\|WP_010553685.1\|1297916_1298690_-\|Zn-ribbon-containing-protein	gnl\|CDD\|370804	pfam10071, DUF2310, Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310). Members of this family of proteobacterial zinc ribbon proteins are thought to bind to nucleic acids, however their exact function has not as yet been defined.	3.73174e-153
NZ_CP011025.1\|WP_007378192.1\|1289463_1289799_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|377727	pfam06877, RraB, Regulator of ribonuclease activity B. This family of proteins regulate mRNA abundance by binding to RNaseE and inhibiting its endonucleolytic activity. A subset of these proteins are predicted to function as immunity proteins.	1.23765e-21
NZ_CP011025.1\|WP_010553675.1\|1308350_1308992_-\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	3.78281e-92
NZ_CP011025.1\|WP_002963032.1\|1300961_1301261_-\|DUF3301-domain-containing-protein	gnl\|CDD\|378706	pfam11743, DUF3301, Protein of unknown function (DUF3301). This family is conserved in Proteobacteria, but the function is not known.	1.3818e-30

>NZ_CP011025.1|WP_008169301.1|1299456_1300110_+|GNAT-family-N-acetyltransferase
MSVTTPADTFSVQYLAAEDISTAASLIYQAYHDDPVLQNMLSYNDENKSVYEKKLRSLIREELSSFWQEKQPLIGLYRNDKLKAVACVFESNSQLQAQRYWHWRLKLMLSAGYLQTNQLIDKEQTIRDALKEKGNYYFLAFIAVDPHFHGQGFGRYLLRGLDDLVKCNAESTGMAVFVTRKEHTEFFKTEKFEAFKHLTFNQVEGELLFKSIIEPTI
>NZ_CP011025.1|WP_002958240.1|1299066_1299303_-|DUF2789-domain-containing-protein
MDTTKHDINTLFAQLGLPNSDEQIDAFIASHELEDTTLLQEASFWDEAQQHFLAESLAQDGDWSEVIDELDVRIRQSK
>NZ_CP011025.1|WP_010553684.1|1298703_1298970_-|hypothetical-protein
MNSVVFDAIKALLDEGKTPTVALTKSRLAQPVPMPMIIAAVSQYKNNPDSINNFMRNPQQSDSTELKTSQLDRIEQKLDKLLALLEQK
>NZ_CP011025.1|WP_010553685.1|1297916_1298690_-|Zn-ribbon-containing-protein
MFVVDLTFDCYQDTTLEQAEQAINRLVNALRFNGQIMGEEFPTVLKDGFFITRVMCPTEDAMHPLNNSPFVKHSIEKLHSAGLLAPKVKVIGQDIHSNGADCCKEPSSYILYTTYVHTCSPLYCGDDFLPVPLFRIPAIANGDYKTLIKWQEDWQACDQIQINGATRCEFPALEEISSIQSDLYRRGKDITKRISFLTKKPTYYYLYRVGGVDKASELERKCPSCHGDWKLPESWFGLFDFRCEPCGLVSNISWDFQ
>NZ_CP011025.1|WP_010553686.1|1297313_1297853_+|SecY-interacting-protein
MSVALLIEQLHQTFSENTLKNTAKYPLIVHDEQWPSLCEVGEVDEQGNIQWQGARQQPAGSLNDLASALELEFPKELSELYGHMYGGSISASIDGHQVELLQAWNEEDFNLLQQNITGHVLMKRKLKQPETVFIGLTDQDDLLVSVLVHTGEVCLEHVGKKTHHVLAPNINAFLKALEV
>NZ_CP011025.1|WP_010553687.1|1296408_1297254_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MTDYSNSPDLKGSVLGQSTEYVDVYTPSLLFPIARKLNRDALNIDEAELPFKGQDIWTGYELSWLNNKGKPQVAVALFTFECQSSHIIESKSFKLYLNSFNQTRFESIDIVKQHLIDDLSNAVNSTVKVTLYNPDDYNCLPCTALPGECIDDLDIEINNYDIDANSLKAKSDNVVTETLYSHLLKSNCLITSQPDWASVIIRYTGEQICRESLLRYLISFRTHNEFHEQCVERIYSDLTTQLNIKELEVYARYTRRGGLDINPYRSTHYNDTPFAVKINRQ
>NZ_CP011025.1|WP_010553688.1|1295461_1296349_+|peptidylprolyl-isomerase
MKKVILPALLSVFLSGCAQQLGDDVANQELPLLSASEVIASATDNDWRVVDAQNTLKITLPTGDAYIELNELLAPKHVQNIKKLAREGFYKNTSVYRFVEGFVAQGGDSSGKKLIKTADKTVPAEFYLTTNKPLLITELNGDGYAPVTGFLNGFAVAQNSAHTQTWQVHCSGVFAMARDNDINSASTEFFVTIGQGPRYLDKNITVFGRVLEGIEHFNRLARTPTEGKAFNPITNIQVLGDVQSDKSIFKVMKTNSSVFKNLISARKNRVEPWFVKAHNYVDVCGMPIPTKREVN
>NZ_CP011025.1|WP_010553689.1|1291739_1295429_+|translocation/assembly-module-TamB
MSVLKKITAAVSAIFVTLVVALFCLLFTAPGNQFIAYSANKAVDGLHIEIKDGRFIYNDAFNVRFASNGLDFNAQQLKIDLFWWQCDGICIDNLSAKSINLTLPKTADSQEKAAAEPLEKISLPFNIAVKNIAINKFTLEHPSANVSVNNFKLSAKAEGSKLTVKSLNIPTILVALKEQEQDAKTQTAQNTQAPLTHLPALPNIEFTSPLDLVVEDFEIAKITIEQNEAQHVIENISLQLSVEDAVINLESFSAKYEQWQLNTHLNAELAGNLPVKGDVVLQSDEHQANLQLNGDLSNLNLNLETQGQYPLSLTATANLKQKNYPFELNGKIKQWLIDAQSNELKVRNVSLNAQGNADDYQLSLQANSQLGAYPAVDLNTQLKGSLTKATLQALSIKANESSATIKANVDWQKGIQANFNGTLANLKAQYLTDAATSDISGQFKGSFNAADDKWQLQMNNTKLSGLLNDVPLEFASNFKLDNTLKANIDSFYLSSGTNKLALSGQVDDTWQVDGKVTLKSDEKANIPFTADGNANLKVRGERLTPSVDLALILDRFIFDEININKLSVKGQLDTAADWQTDVSVSVGSALVAEQQINSVKIDISGDKTDHQLTASVDAEQGSIELEVNGKVNNTTWNGELSNVTLSDKKLSFSNTKNIAIMVNTQSGDFDVSAHCWASEQSKLCIDTLAQSKNLGQLNAKLSNLALEELKHFLPNSIRTRGNIAGDVALNWQSGALKTLRANIDSSDLEAVLTSEEDRFKLPIETLSISAFSDSQIGKLEANLESSVLGKINTQINIDDIQNTQALNGTINIDKILLSDLQPFLETLEQLKGDISGKVALAGTLKDPLLNGELNVSDISLEGEQLPIALQNSNINVLFDKTTATIKGNLNDNQGGKINLTGDVDWQGAQPAVNVAVVGEQFYVRAQQGVTFKVSPDLKIGLANNALKLAGEVVVPYGRIMIEELPEGAVQVSDDEIIVDQKTEATETVPFDYDIDLKVIVKNDVKVESFGLESKVAGDLAIKMSQGAPIIATGELNLIEGTYLAFGQDLIISTGQVGFSGSIEQPFLNIKAIRNPDTTANGVIAGVTLTGNVEQPTLKIFSEPAMDQAQALAYLLNGQPLGDGESSSSDAMLTQLLLSQGVSRSEGVVSKVGETFGLSDVSLSSSGSGDSTKVEISGYVAPSLQVKYSVGVFDSLSEVAVRYQLLSQLYIEITSGLYQNVDVLYKFDWE
>NZ_CP011025.1|WP_010553690.1|1290012_1291740_+|outer-membrane-protein-assembly-factor
MFIKFLRCMCVVSALIATNSYAAEKVIEDYEIEGLSGDLENNVALYLKQLIGEKPTRTLRRYAQKQVQNSIKALGYYSPTVEVIYDKDDSELIVKVERGPATRIEAINITLNGDGQSDTQLQALIKSNHLKQGDVLNHGKYDSAHKKIESMLLELGYFDAKWPARKLEVSLKKNSAVITFIIDTGVRYEFGDIQIASSTPAEKYIRSIAPFSQGQPYKSTHIADYNLDLSSTPYFASVRVYADIAARKNSQVPIKVEVLPKPANSYEIGGGFSTDLGPKVRFKWSKPWITEDGHYLETNLNVAQKQQDISMAYTIPVDDPNDDLWRFSVGYKLEDELTNDTYSEILTGQVQRQWLTENKWVRTAFLRRDQETYRIGDEDEESTEMLMPGISYARKKSKGGTTPYWGEQWLISAEFGLDDVLSSTNLIRVQMQHAWLRTYFDRHLVFLKANVGAMLVDDINNVPFSLRFYAGGDQSVRGFAYQSISPENDDGELIGGKYLLSGTMEYNYQFAKNWRAALFVDGGTATNDFSDDFEVGAGFGFRYLTPVGPVRIDHAWGLTKESKSTRLSITIGPEI
>NZ_CP011025.1|WP_007378192.1|1289463_1289799_-|ribonuclease-E-inhibitor-RraB
MQFPDDDNGQLLAEIAAAGIDLNKMHQVDFFILFEQEADAEKFAKEIVSDALVQNAELEKCKDTGVWEVITQVQMVPEHTLLGQAEQYIESIANSFNGYGDGWGLMDGDEA
>NZ_CP011025.1|WP_002963032.1|1300961_1301261_-|DUF3301-domain-containing-protein
MASLWTFILIGSVIYLFWLNRKVAEAANVHAKRQSEQLQVQLMSVACTKRRFGFLKNGKPGIKSEFIFEFSSDGENAYQGVLIMENEFLKSVVVPPHKI
>NZ_CP011025.1|WP_010553683.1|1301261_1302290_-|DUF3549-family-protein
MSDQIATLGQLLDGAGTQWRAFDIGRHITKLDKKQFLAIEQAQVPYPYPLAGHAWLAIQFWDTKASKEPYVWFLKFPLDEQSMLVSASRDHFADMVIQALGTEITGEQADGKLDNNPYVFTPNANKLAAFNAQVKVLLKQPASQYYEHAQLYFSGKIGFDNWQSVALQGIADFALRLDSDTNLSNLQKAWAHLPIEVLQPLSAMLEHVEIPTSMSELLVDYTQAAISNNDTVAITAALRSVSKGQAQGLCAQLVDTVLSSPVRHDSDVLLTIAGRCFKQLENPERLHVFMDNCAHHQKIEELFPSIFADLVAIPTIRPHLLGLLRKENRSETLARAIGRLFS
>NZ_CP011025.1|WP_010553682.1|1302394_1302715_+|YqcC-family-protein
MYQQTQTYLVQLTALLQKHALWQSEPIDADALLSNTPFCHDTMAFEQWLQFVFINKIQQLITHKQPLPRNFAIAPMAQMTLVSKAGSDEIIELLTALDTFLGEPNE
>NZ_CP011025.1|WP_010553681.1|1302707_1303472_+|tRNA-pseudouridine(65)-synthase-TruC
MSERPAPVEYGELTILYQDENYVAINKPSGLLVHRSFLDKHETQFAMQMLRDQLGQHVFPVHRLDRPTSGVLLFALSSEAARDMNQLFIEGTIAKRYLALVRGFAPESVFLDKPLKEELDKIADKFADQDKAPQEAQTQFNCLRQVALPIPIGKYPTVRYSLVECFPKTGRKHQIRRHLKHLSLPIIGDVNHGDNQHNQFFRDHFELRRLMLFATELSFVHPYSNESITIKAPLGEDMLEICKQLGWPKQEKDY
>NZ_CP011025.1|WP_010553680.1|1303471_1303921_+|flavodoxin
MAHISIFVGSVNGGAERLSDEVAATIEQAGHTATVITEASLDDIKNASHILIVTSTTGQGDVPSNLAGLYFAMNSTFPMLTDKPFGVIAMGDRCYGDTFCGAGRSFDELLRDLQAKPVGNRLEIDACEDFEPWPVTEPWLKVWLEKLPA
>NZ_CP011025.1|WP_010553679.1|1304458_1306369_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MLPLLRILIIEQDPATLQGLSTNLSKTIPNFERDDIHIDIIECLELKHALECVEEDGDIQAVVLSWDMHNKVGERMYSRFIEDLKAIRLELPVYVIGDDTKGLEIVNESEEIESFFFKDEVISDPEAILGYMINDFDDRSETPFWTAYRRYVGEANDSWHTPGHSGGSSFRNSPYIKDFYQFYGRNVFVGDLSVSVDSLGSLSDSTNTIGRAQESAAATFEVKHTYFVTNGSSTSNKIILQTLLRKGDKVIVDRNCHKSVHYGILQSASYPIYLASILNPKYGIFAPPSLADIKLAIENNTDAKLLVLTGCTYDGLLSDLKQVVDYAHQYGIKVFIDEAWFAYSLFHPSFRHYSAIHAGADYITHSAHKVVSAFSQASYIHINDPDFDADFFREIYSIYASTSPKYQLIASLDVCQKQLEMEGYKLLNALLNHVEEFKQQMASLKQIKVLAKQDFMEIFPHFSGDNMGHDPLKILIDISELPYSLKDIHKYLLDEIGLEIEKYTHSTILVLLTLGGTRSKIIRLYNALKKLDSGKVKLSKSTRRARLPENLPAIDLACIPSDAFYGDRESVPISKSNNRICAGLVTPYPPGIPLLVPGQHITDDHIEYLQELASQGLTIQGSFDGEIYVLKGKVNK
>NZ_CP011025.1|WP_010553677.1|1306973_1307606_-|endonuclease-III
MNKEKRHQILSRLRDDNPHPVTELEYSSPFELLVAVTLSAQATDVGVNKATRKLFPVANTPQAILDLGHDTLRDYIKTIGLFNSKAANVYKMCQILVDEHNSIVPENREALEALPGVGRKTANVVLNTAFGWPVIAVDTHIFRVSNRTKLAMGKDVVAVEQKLEKVVPKEFKVDVHHWLILHGRYTCVARKPKCGSCIIEDLCEFKEKTD
>NZ_CP011025.1|WP_010553676.1|1307655_1308354_-|electron-transport-complex-subunit-E
MSELKTLYKEGVWVNNPALVQLLGLCPLLAVTSTVTNALGLGLATLLVLIGSNVTVSIVRNWVPKDIRIPVFVMIIAGFVTIVQLLMNAYTFGLYQSLGIFIPLIVTNCAIIGRAEAYASKNPVHLSAFDGLMMGLGFMAVLLVLGTMRELIGQGTLFDGADLLLGPWAQSLRIEVFNFDNQFLLAILPPGAFLGLGLLIAAKNVIDAQIKSKQIAPPEAEKGPRARVTSLT
>NZ_CP011025.1|WP_010553675.1|1308350_1308992_-|electron-transport-complex-subunit-RsxG
MIISSMAKNGAILTAFALATTGLVASINALTADKIAEQEQLQLTAQLQEVLDPKSYDNQLSQDCVIITDEKLGPHANQVIYRARKNNKPVAVVIRHVTPNGYSGDINLLTAVLSDGTIAGVRTTKHEETPGLGDKVEVKKSLWITTFKSLTVEGEKDARWAVKKDGGQFDQFTGATITPRAVVGSVKNAVLFAQTNFDDIFAAPNAECMEVAK
>NZ_CP011025.1|WP_002962268.1|1308988_1310047_-|electron-transport-complex-subunit-RsxD
MKLTMASSPHNHSHKSLTRLMLSVIAACIPGLIAQVFFFGTGVLIQLVLALVAVSVFEAAIMLIRKRPVWPALSDGSAWLTAVLLALSIPPLAPWWIIVIGCLFSIVIVKQLYGGLGFNLFNPAMAAYVLLLVSFPVQMTAWLPVTDLINTPIGFADQLRLIFTDFTASGFSLDQVRAGVDGLTMATPLDTVKTDIAHGLTVTESMQKPLFNEWAGLGWVWVNLGFLVGGLYLLKAKIINWHIPVSFIASLAVCSAIGYIASPGTEPGTLFHLLSGATMMGAFFIATDPVSAATTNKGRLIYGALIGLLIYLIRTFGGFPDAIAFSVLLINIAVPLIDYYTQPRTYGHGAVK

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Crispr_ID: NZ_CP011025_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011025_4

1310366-1310470

Orphan

Consensus_repeat	Method
TCTTCTAATGCTTTAGCTGCTTTTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011025_4

>merge|NZ_CP011025|4|1310366-1310470|CRISPRCasFinder
TCTTCTAATGCTTTAGCTGCTTTTTTGTCATCAACAGGGGCATCAGTTTGTGGCTCTTCACTCACGGACTGCTCAGCGTCTTCTAATGCTTTAGCCGCTTTTTTG

>NZ_CP011025|4|4|1310366-1310470|CRISPRCasFinder
TCTTCTAATGCTTTAGCTGCTTTTTTG	TCATCAACAGGGGCATCAGTTTGTGGCTCTTCACTCACGGACTGCTCAGCG
TCTTCTAATGCTTTAGCCGCTTTTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011025.1\|WP_024591018.1\|1317977_1319357_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240554
NZ_CP011025.1\|WP_010553670.1\|1322289_1322970_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225258
NZ_CP011025.1\|WP_007583893.1\|1319353_1321348_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP011025.1\|WP_002962268.1\|1308988_1310047_-\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
NZ_CP011025.1\|WP_010553669.1\|1323071_1324094_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011025.1\|WP_010553671.1\|1321350_1322289_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|287624
NZ_CP011025.1\|WP_010553668.1\|1324098_1324341_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132023
NZ_CP011025.1\|WP_007585357.1\|1312811_1313366_-\|electron-transport-complex-subunit-RsxB	unknown	unknown	gnl\|CDD\|235347
NZ_CP011025.1\|WP_010553683.1\|1301261_1302290_-\|DUF3549-family-protein	unknown	unknown	gnl\|CDD\|378801
NZ_CP011025.1\|WP_010553680.1\|1303471_1303921_+\|flavodoxin	unknown	unknown	gnl\|CDD\|181230
NZ_CP011025.1\|WP_010553677.1\|1306973_1307606_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
NZ_CP011025.1\|WP_008172491.1\|1313367_1313949_-\|electron-transport-complex-subunit-RsxA	unknown	unknown	gnl\|CDD\|235352
NZ_CP011025.1\|WP_010553682.1\|1302394_1302715_+\|YqcC-family-protein	unknown	unknown	gnl\|CDD\|377282
NZ_CP011025.1\|WP_010553673.1\|1314160_1316104_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|376350
NZ_CP011025.1\|WP_010553681.1\|1302707_1303472_+\|tRNA-pseudouridine(65)-synthase-TruC	unknown	unknown	gnl\|CDD\|182971
NZ_CP011025.1\|WP_007583901.1\|1324549_1324999_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_CP011025.1\|WP_010553676.1\|1307655_1308354_-\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
NZ_CP011025.1\|WP_010553679.1\|1304458_1306369_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|224893
NZ_CP011025.1\|WP_010553675.1\|1308350_1308992_-\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
NZ_CP011025.1\|WP_002963032.1\|1300961_1301261_-\|DUF3301-domain-containing-protein	unknown	unknown	gnl\|CDD\|378706

Protein	Function_ID	Function_description	E-value
NZ_CP011025.1\|WP_024591018.1\|1317977_1319357_+\|MATE-family-efflux-transporter	gnl\|CDD\|240554	cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.96191e-159
NZ_CP011025.1\|WP_010553670.1\|1322289_1322970_+\|hypothetical-protein	gnl\|CDD\|225258	COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only].	1.84356e-35
NZ_CP011025.1\|WP_007583893.1\|1319353_1321348_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP011025.1\|WP_002962268.1\|1308988_1310047_-\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
NZ_CP011025.1\|WP_010553671.1\|1321350_1322289_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|287624	pfam10672, Methyltrans_SAM, S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyze the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalyzed by the S-adenosylmethionine-dependent methyltransferases.	4.98422e-93
NZ_CP011025.1\|WP_010553668.1\|1324098_1324341_-\|hypothetical-protein	gnl\|CDD\|132023	TIGR02978, Phage_shock_protein_C., phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects. [Cellular processes, Adaptations to atypical conditions].	0.000221656
NZ_CP011025.1\|WP_007585357.1\|1312811_1313366_-\|electron-transport-complex-subunit-RsxB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	1.03301e-124
NZ_CP011025.1\|WP_010553683.1\|1301261_1302290_-\|DUF3549-family-protein	gnl\|CDD\|378801	pfam12069, DUF3549, Protein of unknown function (DUF3549). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.	1.28337e-158
NZ_CP011025.1\|WP_010553680.1\|1303471_1303921_+\|flavodoxin	gnl\|CDD\|181230	PRK08105, PRK08105, flavodoxin; Provisional.	1.52703e-71
NZ_CP011025.1\|WP_010553677.1\|1306973_1307606_-\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	6.96151e-128
NZ_CP011025.1\|WP_008172491.1\|1313367_1313949_-\|electron-transport-complex-subunit-RsxA	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	3.56038e-115
NZ_CP011025.1\|WP_010553682.1\|1302394_1302715_+\|YqcC-family-protein	gnl\|CDD\|377282	pfam04287, DUF446, tRNA pseudouridine synthase C. This family is suggested to be the catalytic domain of tRNA pseudouridine synthase C by association. The structure has been solved for one member, as Structure 2HGK, which by inference is designated in this way.	1.52804e-34
NZ_CP011025.1\|WP_010553673.1\|1314160_1316104_-\|GGDEF-domain-containing-protein	gnl\|CDD\|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	2.15171e-48
NZ_CP011025.1\|WP_010553681.1\|1302707_1303472_+\|tRNA-pseudouridine(65)-synthase-TruC	gnl\|CDD\|182971	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.	2.79269e-129
NZ_CP011025.1\|WP_007583901.1\|1324549_1324999_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	5.58785e-21
NZ_CP011025.1\|WP_010553676.1\|1307655_1308354_-\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	3.49048e-131
NZ_CP011025.1\|WP_010553679.1\|1304458_1306369_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|224893	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism].	4.53572e-124
NZ_CP011025.1\|WP_010553675.1\|1308350_1308992_-\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	3.78281e-92
NZ_CP011025.1\|WP_002963032.1\|1300961_1301261_-\|DUF3301-domain-containing-protein	gnl\|CDD\|378706	pfam11743, DUF3301, Protein of unknown function (DUF3301). This family is conserved in Proteobacteria, but the function is not known.	1.3818e-30

>NZ_CP011025.1|WP_002962268.1|1308988_1310047_-|electron-transport-complex-subunit-RsxD
MKLTMASSPHNHSHKSLTRLMLSVIAACIPGLIAQVFFFGTGVLIQLVLALVAVSVFEAAIMLIRKRPVWPALSDGSAWLTAVLLALSIPPLAPWWIIVIGCLFSIVIVKQLYGGLGFNLFNPAMAAYVLLLVSFPVQMTAWLPVTDLINTPIGFADQLRLIFTDFTASGFSLDQVRAGVDGLTMATPLDTVKTDIAHGLTVTESMQKPLFNEWAGLGWVWVNLGFLVGGLYLLKAKIINWHIPVSFIASLAVCSAIGYIASPGTEPGTLFHLLSGATMMGAFFIATDPVSAATTNKGRLIYGALIGLLIYLIRTFGGFPDAIAFSVLLINIAVPLIDYYTQPRTYGHGAVK
>NZ_CP011025.1|WP_010553675.1|1308350_1308992_-|electron-transport-complex-subunit-RsxG
MIISSMAKNGAILTAFALATTGLVASINALTADKIAEQEQLQLTAQLQEVLDPKSYDNQLSQDCVIITDEKLGPHANQVIYRARKNNKPVAVVIRHVTPNGYSGDINLLTAVLSDGTIAGVRTTKHEETPGLGDKVEVKKSLWITTFKSLTVEGEKDARWAVKKDGGQFDQFTGATITPRAVVGSVKNAVLFAQTNFDDIFAAPNAECMEVAK
>NZ_CP011025.1|WP_010553676.1|1307655_1308354_-|electron-transport-complex-subunit-E
MSELKTLYKEGVWVNNPALVQLLGLCPLLAVTSTVTNALGLGLATLLVLIGSNVTVSIVRNWVPKDIRIPVFVMIIAGFVTIVQLLMNAYTFGLYQSLGIFIPLIVTNCAIIGRAEAYASKNPVHLSAFDGLMMGLGFMAVLLVLGTMRELIGQGTLFDGADLLLGPWAQSLRIEVFNFDNQFLLAILPPGAFLGLGLLIAAKNVIDAQIKSKQIAPPEAEKGPRARVTSLT
>NZ_CP011025.1|WP_010553677.1|1306973_1307606_-|endonuclease-III
MNKEKRHQILSRLRDDNPHPVTELEYSSPFELLVAVTLSAQATDVGVNKATRKLFPVANTPQAILDLGHDTLRDYIKTIGLFNSKAANVYKMCQILVDEHNSIVPENREALEALPGVGRKTANVVLNTAFGWPVIAVDTHIFRVSNRTKLAMGKDVVAVEQKLEKVVPKEFKVDVHHWLILHGRYTCVARKPKCGSCIIEDLCEFKEKTD
>NZ_CP011025.1|WP_010553679.1|1304458_1306369_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MLPLLRILIIEQDPATLQGLSTNLSKTIPNFERDDIHIDIIECLELKHALECVEEDGDIQAVVLSWDMHNKVGERMYSRFIEDLKAIRLELPVYVIGDDTKGLEIVNESEEIESFFFKDEVISDPEAILGYMINDFDDRSETPFWTAYRRYVGEANDSWHTPGHSGGSSFRNSPYIKDFYQFYGRNVFVGDLSVSVDSLGSLSDSTNTIGRAQESAAATFEVKHTYFVTNGSSTSNKIILQTLLRKGDKVIVDRNCHKSVHYGILQSASYPIYLASILNPKYGIFAPPSLADIKLAIENNTDAKLLVLTGCTYDGLLSDLKQVVDYAHQYGIKVFIDEAWFAYSLFHPSFRHYSAIHAGADYITHSAHKVVSAFSQASYIHINDPDFDADFFREIYSIYASTSPKYQLIASLDVCQKQLEMEGYKLLNALLNHVEEFKQQMASLKQIKVLAKQDFMEIFPHFSGDNMGHDPLKILIDISELPYSLKDIHKYLLDEIGLEIEKYTHSTILVLLTLGGTRSKIIRLYNALKKLDSGKVKLSKSTRRARLPENLPAIDLACIPSDAFYGDRESVPISKSNNRICAGLVTPYPPGIPLLVPGQHITDDHIEYLQELASQGLTIQGSFDGEIYVLKGKVNK
>NZ_CP011025.1|WP_010553680.1|1303471_1303921_+|flavodoxin
MAHISIFVGSVNGGAERLSDEVAATIEQAGHTATVITEASLDDIKNASHILIVTSTTGQGDVPSNLAGLYFAMNSTFPMLTDKPFGVIAMGDRCYGDTFCGAGRSFDELLRDLQAKPVGNRLEIDACEDFEPWPVTEPWLKVWLEKLPA
>NZ_CP011025.1|WP_010553681.1|1302707_1303472_+|tRNA-pseudouridine(65)-synthase-TruC
MSERPAPVEYGELTILYQDENYVAINKPSGLLVHRSFLDKHETQFAMQMLRDQLGQHVFPVHRLDRPTSGVLLFALSSEAARDMNQLFIEGTIAKRYLALVRGFAPESVFLDKPLKEELDKIADKFADQDKAPQEAQTQFNCLRQVALPIPIGKYPTVRYSLVECFPKTGRKHQIRRHLKHLSLPIIGDVNHGDNQHNQFFRDHFELRRLMLFATELSFVHPYSNESITIKAPLGEDMLEICKQLGWPKQEKDY
>NZ_CP011025.1|WP_010553682.1|1302394_1302715_+|YqcC-family-protein
MYQQTQTYLVQLTALLQKHALWQSEPIDADALLSNTPFCHDTMAFEQWLQFVFINKIQQLITHKQPLPRNFAIAPMAQMTLVSKAGSDEIIELLTALDTFLGEPNE
>NZ_CP011025.1|WP_010553683.1|1301261_1302290_-|DUF3549-family-protein
MSDQIATLGQLLDGAGTQWRAFDIGRHITKLDKKQFLAIEQAQVPYPYPLAGHAWLAIQFWDTKASKEPYVWFLKFPLDEQSMLVSASRDHFADMVIQALGTEITGEQADGKLDNNPYVFTPNANKLAAFNAQVKVLLKQPASQYYEHAQLYFSGKIGFDNWQSVALQGIADFALRLDSDTNLSNLQKAWAHLPIEVLQPLSAMLEHVEIPTSMSELLVDYTQAAISNNDTVAITAALRSVSKGQAQGLCAQLVDTVLSSPVRHDSDVLLTIAGRCFKQLENPERLHVFMDNCAHHQKIEELFPSIFADLVAIPTIRPHLLGLLRKENRSETLARAIGRLFS
>NZ_CP011025.1|WP_002963032.1|1300961_1301261_-|DUF3301-domain-containing-protein
MASLWTFILIGSVIYLFWLNRKVAEAANVHAKRQSEQLQVQLMSVACTKRRFGFLKNGKPGIKSEFIFEFSSDGENAYQGVLIMENEFLKSVVVPPHKI
>NZ_CP011025.1|WP_007585357.1|1312811_1313366_-|electron-transport-complex-subunit-RsxB
MTLFYALIAIGSLALIFGLILGFAAIRFRVEGNPIVEQIDTILPQTQCGQCGYPGCRPYAEAIANGDEINKCPPGGESTMKKLAGLMGVDEKPLAGGEQAEPIKTVAYIREDECIGCTKCIQACPVDAILGATRQMHTVLIDECTGCDLCVEPCPVDCIDMLPVAETKQNWKWQLDAIPVTQID
>NZ_CP011025.1|WP_008172491.1|1313367_1313949_-|electron-transport-complex-subunit-RsxA
MTEYVLLLIGTVLVNNFVLVQFLGLCPFMGVSGKLDTAIGMSLATTFVLTLASVTSYLVNQYILIPLDIAFLRTMSFILVIAVVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNIKEDHSFLQSAVYGFGAAVGFSLVLVLFAALRERLAAADVPTPFKGASIAMITAGLMSMAFMGFTGLVKF
>NZ_CP011025.1|WP_010553673.1|1314160_1316104_-|GGDEF-domain-containing-protein
MAGFKKLIFIQIISWLLCVAAGSYFISISFDTAVSDAQKSAQITVTKYINDLSLDDISAQNLKQSIADGNTFSSFTLRDYQGAEIFSINPPTQLPMFADFVLSNFNSVRPQFAVNDASDIKVEFVLNIEHLASQLQTSLFIVILISAILVIIPIILMQSIFYRLNKNISTTVADIIDIYINQNQVDNDLETALDSTRLKKLGKDLVPSFNRLSHFLKSKSEDIQSAALSIKHEAYKDVITSLGNRNMFVEYYEKNIENTEQSTFGSLAMVRCSELQAINQSRGYQKGDEYVKGVADIIKHISGTYTDSQVFRLNSSDFAVVLPHTPLKEAERFGENLQSRFTQYQQNQELSSVANTGIVGYEKGKPLGELLSVVDNAMSMAQSKQVNAWHVQRETDLVNNVSAGFGNQNWRKVINEVIESKRVHLVMQNIMPLGKSIKAYAEIQVRFKTEDNQVLPTASFLAMAEKLGMAIEIDRLIIDSSLEKVKSRNLSEKFFGLNVTASSAHNDQFVIWLERRLLKDTHIASKLVFEVSEFGLQQNIKASKRFIDMVHRVGARVTVERFGVGLTSFKFFRDLKPDFIKMDASYTRGLEDDKNNQYFMRLMVDLAHRIGVSVFAEGVESQEEKHIIETLCLDGVQGYYIEKPKDI
>NZ_CP011025.1|WP_024591018.1|1317977_1319357_+|MATE-family-efflux-transporter
MRAISKSQTRPDLLNDPILPTLKTMTIPMIFGMITLMMFNIVDTFFISLLGTEPLAAVSFTFPVTFTVISLAIGLGIGTSAVIAKALGSNKIDEARFDASISLMVGVVLVIVLSSVGYLLIDPIFTLLGAGAQVLPLIHEYMNIWFIGSVFLITPMIGNSVLRASGDTKTPSIVMGGAGLINAVLDPILIFGFGPVPALGIQGAAIASVIAWSVAVVIILYILAVKKRLLSLKAGKQTVTGAIRKILKIGLPAAGANMLTPVAMAVMTAMVAHHGPEAVAAFGVGSRIESIASILVLALSMTLPPFVSQNFGAGKLCRVKEAYTGTLKFVMVWQFAIYVLLIAFSGVISQLFGKEQAVIDVIKLFIYTIPLSYGLQGVIILSNSSFNALHKPMYALVLSVIRLFIFYVPFAYVGNEIAGLLGLFIGAALGNLFTAIVAYKWFMKKLEALSGESLQECNN
>NZ_CP011025.1|WP_007583893.1|1319353_1321348_+|excinuclease-ABC-subunit-UvrB
MSDHFQLKSHFKPAGDQPTAIKQLCEGLEAGLAHQTLLGATGTGKTFTMANIINDLNRPTIIMAHNKTLAAQLYGEMKEFFPKNAVEYFVSYYDYYQPEAYVVSSDTFIEKDASINEHIEQMRLSATKALLERRDTIIVASVSAIYGLGDPKSYMKMMLLLKVGEKVDQRDMLRRLAEIQYTRNDIDFSRGTYRVRGEVVDIFPAESSTFAIRVEMFDDEIERLSIFDPLTGAVEKHIIRTTIYPKTHYVTPREKILGAIDKIQEELKDRRAQLLSANKLVEEQRVTQRTQYDIEMMRELGYCSGIENYSRYLSGRTPGDPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKENLVEYGFRMPSAMDNRPLRFEEFEAISPQTIYVSATPGDFELDRCVGAIAEQVIRPTGLLDPLIEVRPVGDQVDDLLSEIYKSVEKGERVLVTTLTKRMSEDLTDYLSEHDVKVRYLHSDIDTVERVEIIRDLRAGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSARSIIQTIGRAARHLDGRAILYGDKITKSMAKAMDETARRREIQHAYNIEHGIEPHSLAKKILDAMDVGEEAGPKDNLRLVRKDSKKVLSAKEITVQIKQLETKMHAYASDLEFEKAGSVRDEIHELQQQLIN
>NZ_CP011025.1|WP_010553671.1|1321350_1322289_+|methyltransferase-domain-containing-protein
MTANFTPLITALEDAPILKNELCRVFHGRGHSVEALSHINLDFYPPSLFLVSYDEIDEQTLTELTDVVWQWVQKNQPELISSLVYQQRAGVQSQNTVVYGQLPNPHVVTENGIRFLVDLQSRQNTGIFPDMRSGREFVMANSKHGKVLNLFSYTCGFSLAAMQGGADHVMNMDMSKGVLKVGKQNHQLNGFERGVSFLPHDILKSFGKLKKAAPFDLIIVDPPSFQKGSFILTKDYQKVLRRLPELLCDTTQLLLCANSPELSEEAFKALINEHTQGAIEFVERLAPTERFIEVDSDRSLKALIYKTSQSAD
>NZ_CP011025.1|WP_010553670.1|1322289_1322970_+|hypothetical-protein
MKLSKRLTAIDTLISQHHDIIWDCCCDHGYLGMALLKRAAANQVIFVDIVATLMNDLEAQLSSINKLQKTCNKNPQWQVLCQDVGKIEIAQSKSQVVVIAGVGGELLLSLIQQIIANNAVEHLNNVRFILCPVHHTYKLRVGLKQLGLGLVSEQIVYDNKRFYEVIEVSFSSNNEISHTGNKMWDFSSAEHAMYQRQLINHYNKMLNKDKPYYQKVITDYQELTDS
>NZ_CP011025.1|WP_010553669.1|1323071_1324094_+|hypothetical-protein
MSDNKSHINHLLSNEQKWQHSYEQPISYAPLVQLANSSWVVPQHFLRYKHTLESVNEVLESIEFSAHFRVLAAQKGGEIYLQVAVLSPDNYQKSASANEGKAKKLLFGRRWIVEENLPTSELIQTAFLALKVAREHEVRELFQLMQSGATSTPFNNHHDLPVMAQNPELVKSESAESRVDEVLKRIVFAGKSIELKSQQQIAEQHLYTVELLCEDCQLSEFNKKTIAFLTADPSANSFLHALITALVATSNDYVNEQFKYKGFARFSKHVVVEQIGNLSIAMRSPSTVGLCSMGKQHANQLNFEIDSGRAPQGCGQAIGGFLAAHGIEQPENAHLYPNYL
>NZ_CP011025.1|WP_010553668.1|1324098_1324341_-|hypothetical-protein
MSGTTMIVLIVLISVGSGVVYDMYKKHLEFKHKMQNNNSDAHKQLAETNAQVLALKERVQTLEAIVTDSSFNVKDEINKL
>NZ_CP011025.1|WP_007583901.1|1324549_1324999_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MLNNKIPPVIVVLFFAGIMALIAHYSVIDFTAFITYLAASLVIIGCVFCIAGVVSFKIANTTVNPNKPEQASKLITSGIYRISRNPMYVGFAFILAGWGIWLSSLWALLCIIGFIAYLTFFQIIPEERALTKLFGEEFTAYKARVKRWL

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Crispr_ID: NZ_CP011025_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011025_5

3207932-3208037

Orphan

Consensus_repeat	Method
ATAAATGGTGCCGACTAACCGAGTCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011025_5

>merge|NZ_CP011025|5|3207932-3208037|CRISPRCasFinder
ATAAATGGTGCCGACTAACCGAGTCGACGGGTAATTTGAACAGACTACTGATTACAGCTTTCTTTTCAAACTACTTTAAATAAATGGTGCCGACTAACCGAGTCGA

>NZ_CP011025|5|5|3207932-3208037|CRISPRCasFinder
ATAAATGGTGCCGACTAACCGAGTCGA	CGGGTAATTTGAACAGACTACTGATTACAGCTTTCTTTTCAAACTACTTTAA
ATAAATGGTGCCGACTAACCGAGTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011025.1\|WP_010554898.1\|3197335_3198523_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NZ_CP011025.1\|WP_010554907.1\|3214907_3216512_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP011025.1\|WP_010554895.1\|3193954_3195154_+\|esterase	unknown	unknown	gnl\|CDD\|225375
NZ_CP011025.1\|WP_010554904.1\|3211407_3211680_-\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP011025.1\|WP_010554906.1\|3213730_3214756_+\|methyltransferase	unknown	unknown	gnl\|CDD\|181902
NZ_CP011025.1\|WP_010554902.1\|3205403_3206819_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP011025.1\|WP_010554909.1\|3220286_3221207_+\|GTP-cyclohydrolase-I-FolE2	unknown	unknown	gnl\|CDD\|237466
NZ_CP011025.1\|WP_007378473.1\|3193235_3193577_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP011025.1\|WP_010554908.1\|3217735_3220054_-\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
NZ_CP011025.1\|WP_010554901.1\|3204097_3205414_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP011025.1\|WP_010554905.1\|3211715_3212777_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP011025.1\|WP_010554897.1\|3196172_3197339_-\|monooxygenase	unknown	unknown	gnl\|CDD\|236139
NZ_CP011025.1\|WP_010554899.1\|3198538_3199861_-\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NZ_CP011025.1\|WP_007582968.1\|3221323_3221920_+\|DUF2726-domain-containing-protein	unknown	unknown	gnl\|CDD\|371282
NZ_CP011025.1\|WP_010554903.1\|3208577_3211355_+\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP011025.1\|WP_007587323.1\|3199891_3200455_-\|UPF0149-family-protein	unknown	unknown	gnl\|CDD\|234976
NZ_CP011025.1\|WP_010554900.1\|3201017_3204101_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP011025.1\|WP_007582957.1\|3212938_3213664_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP011025.1\|WP_010554896.1\|3195379_3196105_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011025.1\|WP_002962549.1\|3217002_3217719_+\|two-component-system-response-regulator-ArcA	unknown	unknown	gnl\|CDD\|183013

Protein	Function_ID	Function_description	E-value
NZ_CP011025.1\|WP_010554898.1\|3197335_3198523_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	5.65244e-160
NZ_CP011025.1\|WP_010554907.1\|3214907_3216512_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.01974e-23
NZ_CP011025.1\|WP_010554895.1\|3193954_3195154_+\|esterase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	7.02512e-29
NZ_CP011025.1\|WP_010554904.1\|3211407_3211680_-\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	1.73828e-54
NZ_CP011025.1\|WP_010554906.1\|3213730_3214756_+\|methyltransferase	gnl\|CDD\|181902	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC.	4.1536e-97
NZ_CP011025.1\|WP_010554902.1\|3205403_3206819_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.5726e-67
NZ_CP011025.1\|WP_010554909.1\|3220286_3221207_+\|GTP-cyclohydrolase-I-FolE2	gnl\|CDD\|237466	PRK13674, PRK13674, GTP cyclohydrolase I FolE2.	9.09101e-116
NZ_CP011025.1\|WP_010554908.1\|3217735_3220054_-\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
NZ_CP011025.1\|WP_010554901.1\|3204097_3205414_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	6.22245e-37
NZ_CP011025.1\|WP_010554905.1\|3211715_3212777_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NZ_CP011025.1\|WP_010554897.1\|3196172_3197339_-\|monooxygenase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	2.03422e-150
NZ_CP011025.1\|WP_010554899.1\|3198538_3199861_-\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NZ_CP011025.1\|WP_007582968.1\|3221323_3221920_+\|DUF2726-domain-containing-protein	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	2.10319e-42
NZ_CP011025.1\|WP_010554903.1\|3208577_3211355_+\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	3.03331e-90
NZ_CP011025.1\|WP_007587323.1\|3199891_3200455_-\|UPF0149-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	8.69036e-47
NZ_CP011025.1\|WP_010554900.1\|3201017_3204101_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP011025.1\|WP_007582957.1\|3212938_3213664_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	4.44488e-107
NZ_CP011025.1\|WP_007378473.1\|3193235_3193577_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	1.61983e-52
NZ_CP011025.1\|WP_002962549.1\|3217002_3217719_+\|two-component-system-response-regulator-ArcA	gnl\|CDD\|183013	PRK11173, PRK11173, two-component response regulator; Provisional.	6.55857e-151

>NZ_CP011025.1|WP_010554902.1|3205403_3206819_-|TolC-family-protein
MIWQCKPTLLAISVMLLSGCASDFNSSQRMQAPNNMPHQWQQEASSSVLKVQEQWLTQLQNPTLNKFVQQALKNNQQLLQTSYDVEIQKQQLIVSGAALWPSLDLSTRTSRSKDNRPVSYDNASSVSLELTYEVDLWGKLSDSKREANLTYLAQQARFEQAKQQLVADVVTGWFDVVTSQQLLDLFKRREANAQQNLDIIESGYRQGINEALDVYLARNELNTERARIATQTANLSASARVLERLLGEYPKGAITASSDLPVINTDIPLGLPSELITRKPTLRASWYDLLATDASLAYAHKQRFPSLDLTASLSDSTDRVSDLFSPSSLAWSLLGSISAPLFEGGRLKANEEIARLNTQKQEQLYLQTLYDAFGDVENAISQQQSLKSQYSSTLEAQENALAAEQLSFEQYQSGLVTYTTVLDAQDRSFDAQSSLIDIKNQLIANRINLHVALGGDFAKPSSELKSNNDEN
>NZ_CP011025.1|WP_010554901.1|3204097_3205414_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKTKTAKIIIPAVVIIATILIVMFIKGNPPEAKRFGSPPKASISVAALELKPQNYQVMIDSYGTVKPRTQSLLVAQASGQIIEVSDDFREGGFFEKGDVLLKLDDRDHQAEVKSAQANLLTAEQGLLEEKARGQQAITDWKRLGGSNQASSLVLREPQLAAAEAEVLSAQAVLEKAMLDLERTKVTAPYAGRILSRSVDLGQVVTNNTQLATIYAIDSVEIRLPIKNKDLPFVNLPEQYRDGAKNQAGSIVKFTSDLVGEQTWQGQLARTEGAIDEGAQQLYVVAKINDPYKATANNQYPIKIGQYIKAQITGKTVPNALIIPNSTIYQGTYVYVVEEGVLKRKDITLAWQNATQAMIKTGLNPNDKLVITPLGQVSSGTQVSILGEQSTEQPKSRGANGQGKGKRPTPEQLEQKAKEQGISVEELKKRRAAKQGDKP
>NZ_CP011025.1|WP_010554900.1|3201017_3204101_-|efflux-RND-transporter-permease-subunit
MIAWFAKNHVAANLLLVTLLLSGLFSLSSKIPLEVFPSFETDMISVNVSLRGSTPEDVEQGVTIRIEEAVQDLEGIKQIFSRSSEGSGSVTIEVESGYDPRELLADIKSRVDAINTFPADAEKPIVALAERIREVIAVTVSSDYGEKETREYAETVRDQILRLPNVTQVELSGVRDYEIAIEVSQDILRQYDLSLAQISSAISNSSSDISAGNLKTEGGDVLISSKGQAYRKDEFASIVVKNQADGTIIRLGDIATIKDDFEETPVRTRFNGKQAAFIDVYRIGPQSAITVADDVKNYIKEQQSSLPQGFELSYWDDDSELVKSRISTLTTNALQGGILVLALLTLFLRPAIAFWVFIGIPVSFMGAFIAMPIFGVTLNIMSLFGFILVLGIVVDDAIVTGENVYTHLKTAKSGEQAAILGTQEVATPVTFGVLTTVAAFLPLAFIEGARGALFAQIPVVVIPVLLFSLIESKFVLPAHLKYIKLRHEKGEPSKFDVIQQRFADGFENAILKYYQPTLNLALRHKLASVSLFIGVFVIILTMITSGWTKFVFFPRIPSETVRVNLTLPTGTPFEVTNKYVIDMSQKAQQLQEKYRDPDTGESVILNILATTGGRGGVSNSGSVRFEITPAEKRESDIGSRELASEWRDLIGVIPGAESLTFRAEIGRSSDPIDVQLSGTSLTILQDVADHIKTRLSTYPTVFDIADSMSDGKEELQIELTQQGLALGLNRVNVAGQVRNSFFGSQAQRIQRGRDDVRVMVRLPIDERRSVADLQNILINTPDGGSVPLSHVATLTAGQSPSTINRIDRYRTLNVTADIEKNNTNMTILQADLTEYLDGLMQQYPGVDYKLEGEAKEQRESFGSLAWALVFVFFIIYALLAIPLKSYLQPIIVMSVIPFGMIGAVVGHWIMGMDLTIMSLLGMLALTGVVVNDSLVLVDFINKKRSEGGKVLDAIKIAGASRFRPVMLTSLTTFIGLMPLLFEKATQAQFLIPMAVSLGFGIIFATFITLLLVPINYMLMERFQSWFK
>NZ_CP011025.1|WP_007587323.1|3199891_3200455_-|UPF0149-family-protein
MNDLPDYEKAQLLLEKNEIFVSPAEAHGVISGLLACGLTIDDKEYLGLLSDVFNDGESFSNDLKQFFGTIYKQVVASFNDDEFQFDLFLPSDDETLIDQANGLVSWVAGFMLGFGLKQKDYGKLSSDVKEVITDFSEITRLDTTFEETEEDSQALHEVIEYVRVSALLCFAELGKEQSTQSTKKTLH
>NZ_CP011025.1|WP_010554899.1|3198538_3199861_-|Xaa-Pro-aminopeptidase
MVEVQKSEFKARRERLLAQMDENSVAIIPAASEVTRSRDTEYAFRQDSDFFYLTGFNEPDAVLVLCNNSDAPSTLFCLDKDKLAEIWHGRRVGFDKAKSDYLFDEAYPLSELNDKTLDMLNAKNALYFAQGASPSFDTKVFSLLGTLRSGSRKGLKAPSTLKEIRGLIHEMRLFKSPSEIDVMREGCEISARGHMRAMRFSYAGATEFQLEAELHHHYAMNGAPHPAYGTIVGSGDNANILHYTQNSDVLKSGDLVLIDSGCELQGYAADITRTFPVNGQFSEEQAALYNIVLKAQEVAFDEVKPGGYMSYANKLAMEVMTQGLLDLGILTGDFDELMAKGACKEYYMHGLGHWLGLDVHDVGEYKVNNAERAFEPGMVLTIEPGLYISEDSSAPQKYKGIGIRIEDNLLVTETGHENLTLSVPKKISDIEALMQSAKNV
>NZ_CP011025.1|WP_010554898.1|3197335_3198523_-|2-octaprenyl-6-methoxyphenyl-hydroxylase
MAKQFDVVIIGGGLAGASCALSVAKTNPALNIAVVEANQVTGDYHPSFDDRSIALAQQSVEYLQSLNLFEQNASYTAAIKKVSVSDRGHFGKAHINCDEFAKPSLGYVVEVNPFGRALHLRLTQSNITLLCPDSVIAIEQTLHSNTLTLQSGEQLNAKLLVIADGAQSPTRSLLGLGFNTQPYEQGAIIANVEVAGGHNNHAFERFTQNGPMALLPMSNNRYSLVWCMRQDQVEQHMALSEQGFLSALQSAFGYRGGQFTKVGMRTSYPLVYGQVESLTAHRTVVIGNAAHAIHPIAGQGFNLGLRDVQVLNNLIANSQHDLGSYAFTREYSKKRSDDIKTVMSLTDALVRLFSNSSRVLALGRSIGLFSMDLFPALKAPLTKQLMGQVKQGRRL
>NZ_CP011025.1|WP_010554897.1|3196172_3197339_-|monooxygenase
MKQAQICIVGGGCVGLTLALGLAKADISVVVLDSAPTQALPTDEYGLRVSALSIASQTLLEQLNVWPEIIAQRACAYTHMDVRDADSFGKIAFNNEQLELEHLGHIVENDIIRFALIKELEQQSSATLIFDTQYQQIHQSESDVFITLKSGEPIIAKLLVAADGANSAIRKQFNMALSFKDYDHHALVATVKTKEQHANTARQVFLPTGPLAFLPLSDANTHSIVWSTSPNHCDELLAMDDNTFNKAVMAAIDGQCGLCEVQSKRTAFPLKMRYAQQWVSGKVVLIGDAAHTIHPLAGLGMNLGLKDAAYLIELLTSDSKEFASTRTLRDYERTRKLDAQKHIAMMQGLKELFEGANSVKKLIRGVGLSLVDNLGPIKHLFAKEAIGK
>NZ_CP011025.1|WP_010554896.1|3195379_3196105_+|hypothetical-protein
MLFFSKKWIFRSVVFAIPILFGTYSILIQNVSIADKWSAIGGWAGGYTAFITLIFAIYQYEKLSVTVDKEKLAFHTIPKLLNNLDTLRILPITVLEIDKWGLYDEEREDKVSFINNLHELNKKRSEELLTKEILFDELNSQVDKLKFKGFRFKNEFEENLISLKNDFEDMLKIEQGIKNTLSGININTDIHTYRDSSLFNLENDNKTKIGHIILQGKYKSLDEYIASLRERLVRLKSEIRY
>NZ_CP011025.1|WP_010554895.1|3193954_3195154_+|esterase
MKLLLSLVLILTFSTPFLGHAKTNTTDITVGKKVILQSKILNEDRPIRIFIPETVKDDQPLYVIYLLDGVEHFHTASGVIKSLVDYEQIPNAMLVGIDTTNRVRDYLPKVQGEPKTEFQTFVKNKWPDAGQTDEFLKFVSDELMPYINSNYSTNGYNTLIGHSNAGTLALYTLVNQPELFNNYIAISPNSWWSDEELKNNIIKYTKNPKGDQALFISVASEGARFYTGVLNTLVNLEQQTPSQLKWEYKHYPAFTHMGTILPALSDSLIHLFSDLIFKVTDEHGKFADISLITGYYQALSDKYGFELKAPQDVYVEFAHSQQKFGNTAKAITTLKHFTTDYPNATYSHMRLSQGYTADKQFKEAVTSMKYALELAKQNSRDPMLVDALKDMVNEAQENL
>NZ_CP011025.1|WP_007378473.1|3193235_3193577_-|30S-ribosomal-protein-S6
MRHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGVIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPTEVISELETTFRYNDAVLRNLVIRTKTAETEASPLAREEKKEAPAA
>NZ_CP011025.1|WP_010554903.1|3208577_3211355_+|response-regulator
MQSKFSSPVKGLLPLFLIINIAVTALAIVAHSFYAQTEVSTAQPKPPVNIVTLADRLDLPMVDALTMYGQGKVKQLLDLTSLLDADFEYTLYRFNATSDTQLVYSSSKPATASIKTERHLVEEGILHHLLLLNDQPIGELIIKQNLPATPLSTQDSQVIAYIIAIACVAALFILTLMFNMYVNTRLRKSTDILTQELQAITDDANYNSNVDEQLDIGLGVVAKHINLLLQKVQSAMSESDAAQKELYKLQNSLEGEVQNRTLALEQATLKAERASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTELDGAQHRLSTIIRESAFSLLSILDDILDFSKIEAGKLNIDPIPFSVTDTIEEVARVLSSVAKKRELDLELAIAPDIPINLTGDSVRVRQVLYNLCSNAIKFTSTDEKTQGHVKISVEVVHNTTDHFTLRFCVTDNGKGMSQAQLREIFNPFIQAENSITREYGGTGLGLSICKSLTELMLGTIHVTSHTGIGSEFTVELPFSTSGKIKYAHKGSLNGKRIIVVSNHLEREKVMYRYLSFMGAKITYVHTEEEAEEYQHAQDIIWVADGIDNMDKTNALLRRLFYSLEDYNQQVVVLSKLDEAAINHNNIFYINASPLCKSNFMLSILVAAGLHTPKQIKKTKTLNNYLNVEQARKSNKLILLVEDNLLNQQVLTDQLHILGFGVEIANNGEEGLDMWRKGDYSLILTDLHMPKMSGYDMVEKIRNEAELLESIDAQPYIIAVTANALKGEKERCLAVGINDFITKPIELNALEDTLKRWSDKQSQNPNVVIHQTMALPIDMEAVAKYVNGDEAKQLRFFKMYLEQSQGLIKGINSGVMVNDLDEIIEGCHQLKSISKTIGAQTVAELSSAFEDKCKKGELTTDELIDLRDKLEIEYSKAAQFLKEQIKISEQEDELSD
>NZ_CP011025.1|WP_010554904.1|3211407_3211680_-|oxidative-damage-protection-protein
MARTVFCQKLQKEAEGLGFQLYPGEVGEKIFNNISKEAWSQWQHKQTMLINEKHLNMMDPEHRTFLEEQMVGFLFENKDVEIEGYRPPEK
>NZ_CP011025.1|WP_010554905.1|3211715_3212777_-|A/G-specific-adenine-glycosylase
MLDLNKEQSNSFSNQVVDWYHLHGRKTLPWQLGKTPYKVWVSEVMLQQTQVITVIPYFEKFMQSFPDIIALADADEDLVLHHWTGLGYYARARNLHKTAKIVGDKYQGEFPQTLDEVMDLPGIGRSTAGAVLSLSLGQHHPILDGNVKRVLARYFMIEGWYGVKKVENQLWHLSEQLTPKNNVTEFNQAMMDLGASVCSRSRFDCEACPLNSGCGAFNAGKVKEFPHSKPKKAVPKKSCHQLIVQCGDKVLMEKRPNSGIWGGLFGFFEFNEYEELQIFLAQQGLEANLVELEAFIHVFSHFELKINPHVLNVKKIPDVVNDKQLVWYPLDQSIEVGLAAPTKKLVKQITAIV
>NZ_CP011025.1|WP_007582957.1|3212938_3213664_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSESSNTNLEQAKQEGKYIRTIRSFVKREGRLTKGQAAAIEKCWPTMGLEHKNGMLDLSEVFGNNNDVVVEIGFGMGKSLVEMATNAPHLNFIGIEVHRPGVGACLMDADEAGITNLRIFEHDAVEVLADCIPNESLTTLQLFFPDPWHKKRHHKRRIVQTEFVEKLRAQLKMGGVFHMATDWENYAEHMLEVMNVAPGFKNQSETNDYVPRPDLRPLTKFEQRGHRLGHGVWDLMFERTE
>NZ_CP011025.1|WP_010554906.1|3213730_3214756_+|methyltransferase
MSVLTNPSLLLLRNSEALTGKSILVVNFVQDGFLTELKKLNPQSKVTAFSYNHANGEFAKNTKDVEICVNHTIPGNGYDLVILYYPKSKPELLMALDNIRSAITDDAELLVVGENKSGVKSIEKQLAGKAEFSNKIDSAKHCVLYSFAEITQHPDFDITTYHKKFVVNVADTEFTAISVPGVFNHGSLDMGTKVLLENAPTIKQGRVLDFGCGAGLIATFLGLHNPALEFVCSDVSALATYATQQTLKLNGIKGEAILSDGLKSITGKFDLIISNPPFHTGIATDYTVAETFLANAKQHLTKVGKLNIVANSFLKYPPILETQFESYQTVFKNNKFAVYSS
>NZ_CP011025.1|WP_010554907.1|3214907_3216512_+|HAMP-domain-containing-histidine-kinase
MPKKVHQSSIRKALINLIMLITAICLSLSISISTYLSVKEQKQLIINKLVILSEIVAFDAGKSVVEDDRKTEEKRLKSFENIPLVKNIHIYSIEKASQKPVFFISFNAKKTPPVPLRIDSVDELKTPRITSDHIELARPIYDNEQVVGYVYMRGSLESLETYIERKILIDVLLTLLILIVVYFIAIKVQRRIAKPIEQLSMLLQDVSKNHNYDARAPITDVKEITALSNSLNIMLTRTKKQLERHEKDKQEIKQLNQSLEEKVNQRTIALREANQELLSTLERMHQYQTQIVENEKMASLGQMVAGVAHEVNTPIGLGITGSTLLRDKLADIQQSFDDKKLTSSHLKRFIDEGIENLDLIYRNLNRAADLISNFKKVAVIQDDGVNTYINVHKLISDVLTSIQSELLPKKPVVIINCPTDLAIHSKSEPLQQVFQQLLMNSVIHGFIGKENNEIRFDVELIGKKLTIVYSDNGQGVDKNIKNRIFDPFVTSKRGQGASGLGMHLVYNLVTQALGGRVMFDLEEKHGARFIITIP
>NZ_CP011025.1|WP_002962549.1|3217002_3217719_+|two-component-system-response-regulator-ArcA
MQTPVILIVEDEDVTRLNLVSLFEAEGYKVIEAIDGDDMHDKLTNNDDVNLVVMDINLPGKNGLILARELRQKRKVGLIFLTGRDNDVDRILGLEIGADDYVTKPFNPRELTIRARNLITRTALGGEESALETNGVITFNGWELDENSRCLTSPNGDAKRLPKGEYRALRLMLDSPGRIFSREQLIKHMTGRELRANDRTVDVTIRRIRKHFESDNSTSELISTIHGEGYRFIGKIDA
>NZ_CP011025.1|WP_010554908.1|3217735_3220054_-|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MTDYSLSPWARVLSSSITRFGEFKTAAICYTLFLTVSLILSSMFYYVAIGELHLVDILAVVFFTAVVSPLIISVLLNSIRQLDASYAYLDSATKQEKLLNQTLKDNISRLNIEIDERKMAFHAKHRAIEELRREIAERKKTQQELAQQSMLQRSIVDSSPDLFYYRDNNGVFAGCNKMFEEVMGKSSSELIGKTVEQIFPSHFLAEVLATDKEVEQSHKALTIDVGYEVNGETRWFELRKLPFINDDGDYIGLLGFGRDITSRKEAAQALETAYKDKGKFIATLSHELRTPLNGIVGLTRMLLDTELNKQQRSWGNTIFSSAETLGNIFNDIIDLDKIDRDQLDIATNSINVSDFINDVVNFAGLIAEQKELEFDIKRNGILDVYAQLDPTRLRQVVWNLINNAVKFTQQGKVTLECSRENRVEGPWLVIKVLDTGQGIPPEQLAHIFDMYYKAPDLKGTNAIGSGIGLAVTKALVSAMKGIITVNSTEGEGSCFTVQIPLSLCVAPTEQSYVGRGLYILLVEDVPLNAEIATNLLEQRGHEVLWAETGEDALSFVETEDDLDLVLLDMQLPDINGDVVAKQIRSDSHFDKLPIVALTANVRSAEKELEGISIQGALAKPINTVKLDKMLADLFGIKQSECTEPQLKVSEEALEGIDAHLLDIETIEDFVNSMGLVVFRRSSQLFEKLSPQYQQELLTSLNAGDRDEYESVAHKLKGAAGSVGLNDVQLHAKIMEHGAIDESDEVLKQWLDVLADKINEGQKALHLFLQQLE
>NZ_CP011025.1|WP_010554909.1|3220286_3221207_+|GTP-cyclohydrolase-I-FolE2
MQTNMPDIADTAPALQTGKLDWVGMGEIELPFIFESRDLSPVTVNAKACAFVNLHKEDAKGIHMSRLFLALDLLSTEQQVNPQTIAQALDTFITSHEGLSNKAQIEFKFELPLRRKSLLSGKAGWKSYPVVLTSTIENNIISYELTVDVTYSSTCPCSAALARQLIQNAFNEKFNQETLSQKDVHEWLGTTQGIVATPHSQRSIANVKVKLDSNIQEFDVVTLINTLEAELKTPVQAAVKREDEQEFARLNGQNLMFCEDAARKIKALLETDNYSDYWLQINHYESLHAHDAVAIAVKGIEGGYKA
>NZ_CP011025.1|WP_007582968.1|3221323_3221920_+|DUF2726-domain-containing-protein
MEFALLLILVLVVGASVVASKFNDDGGNPYPFTRKQTVFTQVEGAFLNLLERAVGDQYKIVSRVKLIDVIDCKQGLSIKSKRAALAKAKNKQLDFVLIDKEKLTIVAAVDLVNNANKDGHKAQRDWFVNGALESAGIPHIRMKVKSGYRPSEVRDAIMFKLGKPAATQTQRPVRNRSHKPAVLSPSQAKAQTTALAEI

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Crispr_ID: NZ_CP011025_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011025_6

3259928-3260082

Unclear

Consensus_repeat	Method
TTGCTTATTTAGACTCTAAGCAGAGTTATTAAAGTATGGTGGGCGCAGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011025_6

>merge|NZ_CP011025|6|3259928-3260082|CRISPRCasFinder
TTGCTTATTTAGACTCTAAGCAGAGTTATTAAAGTATGGTGGGCGCAGGACGTATCTTCTAAGAATGAACCTCCGACCGCTTGGTTATAAAACCAAACACTTTAATTGCTTATTTAGACTCTAAGCAGAGTTATTAAAGTATGGTGGGCGCAGGA

>NZ_CP011025|6|6|3259928-3260082|CRISPRCasFinder
TTGCTTATTTAGACTCTAAGCAGAGTTATTAAAGTATGGTGGGCGCAGGA	CGTATCTTCTAAGAATGAACCTCCGACCGCTTGGTTATAAAACCAAACACTTTAA
TTGCTTATTTAGACTCTAAGCAGAGTTATTAAAGTATGGTGGGCGCAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011025.1\|WP_010553261.1\|3260403_3260586_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011025.1\|WP_096058065.1\|3262472_3263571_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP011025.1\|WP_010555500.1\|3248930_3249887_-\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|239569
NZ_CP011025.1\|WP_007583770.1\|3263714_3265436_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_CP011025.1\|WP_010553260.1\|3257125_3258301_-\|DUF1343-domain-containing-protein	unknown	unknown	gnl\|CDD\|377768
NZ_CP011025.1\|WP_007583768.1\|3265517_3266246_-\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	unknown	unknown	gnl\|CDD\|182802
NZ_CP011025.1\|WP_010553257.1\|3251894_3253637_-\|potassium/proton-antiporter	unknown	unknown	gnl\|CDD\|235410
NZ_CP011025.1\|WP_024590718.1\|3266309_3267236_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP011025.1\|WP_007583759.1\|3269415_3271125_-\|DUF4153-domain-containing-protein	unknown	unknown	gnl\|CDD\|372672
NZ_CP011025.1\|WP_010553264.1\|3268801_3269248_-\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NZ_CP011025.1\|WP_010553258.1\|3253889_3255266_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|224671
NZ_CP011025.1\|WP_007583764.1\|3267330_3267852_+\|flavodoxin-FldB	unknown	unknown	gnl\|CDD\|183471
NZ_CP011025.1\|WP_010555535.1\|3250823_3251810_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP011025.1\|WP_010555499.1\|3247285_3248938_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226459
NZ_CP011025.1\|WP_010553263.1\|3268196_3268664_-\|YHS-domain-containing-protein	unknown	unknown	gnl\|CDD\|309878
NZ_CP011025.1\|WP_007583775.1\|3260910_3262446_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP011025.1\|WP_010553259.1\|3255457_3257116_-\|penicillin-binding-protein-PBP4B	unknown	unknown	gnl\|CDD\|179620
NZ_CP011025.1\|WP_033012886.1\|3245352_3245961_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|183566
NZ_CP011025.1\|WP_010555498.1\|3246651_3247299_-\|TIGR02646-family-protein	unknown	unknown	gnl\|CDD\|131694
NZ_CP011025.1\|WP_010555497.1\|3245947_3246571_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011025.1\|WP_096058065.1\|3262472_3263571_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP011025.1\|WP_010555500.1\|3248930_3249887_-\|RNA-directed-DNA-polymerase	gnl\|CDD\|239569	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	1.8363e-64
NZ_CP011025.1\|WP_007583770.1\|3263714_3265436_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_CP011025.1\|WP_010553260.1\|3257125_3258301_-\|DUF1343-domain-containing-protein	gnl\|CDD\|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	3.76052e-178
NZ_CP011025.1\|WP_007583768.1\|3265517_3266246_-\|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC	gnl\|CDD\|182802	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional.	9.08109e-83
NZ_CP011025.1\|WP_010553257.1\|3251894_3253637_-\|potassium/proton-antiporter	gnl\|CDD\|235410	PRK05326, PRK05326, potassium/proton antiporter.	0
NZ_CP011025.1\|WP_024590718.1\|3266309_3267236_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	3.8899e-165
NZ_CP011025.1\|WP_007583759.1\|3269415_3271125_-\|DUF4153-domain-containing-protein	gnl\|CDD\|372672	pfam13687, DUF4153, Domain of unknown function (DUF4153). Members of this family are annotated as putative inner membrane proteins.	7.09312e-17
NZ_CP011025.1\|WP_010553264.1\|3268801_3269248_-\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	2.19652e-35
NZ_CP011025.1\|WP_010553258.1\|3253889_3255266_-\|sodium:proton-antiporter	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	1.8351e-35
NZ_CP011025.1\|WP_007583764.1\|3267330_3267852_+\|flavodoxin-FldB	gnl\|CDD\|183471	PRK12359, PRK12359, flavodoxin FldB; Provisional.	1.09971e-112
NZ_CP011025.1\|WP_010555535.1\|3250823_3251810_+\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.059e-24
NZ_CP011025.1\|WP_010555499.1\|3247285_3248938_-\|AAA-family-ATPase	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	1.73999e-38
NZ_CP011025.1\|WP_007583775.1\|3260910_3262446_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP011025.1\|WP_010553259.1\|3255457_3257116_-\|penicillin-binding-protein-PBP4B	gnl\|CDD\|179620	PRK03642, PRK03642, putative periplasmic esterase; Provisional.	1.73758e-170
NZ_CP011025.1\|WP_033012886.1\|3245352_3245961_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|183566	PRK12513, PRK12513, RNA polymerase sigma factor; Provisional.	2.33643e-29
NZ_CP011025.1\|WP_010555498.1\|3246651_3247299_-\|TIGR02646-family-protein	gnl\|CDD\|131694	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein. Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins. [Hypothetical proteins, Conserved].	2.11516e-12
NZ_CP011025.1\|WP_010553263.1\|3268196_3268664_-\|YHS-domain-containing-protein	gnl\|CDD\|309878	pfam04945, YHS, YHS domain. This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterized membrane proteins. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.	0.000226444

>NZ_CP011025.1|WP_010553260.1|3257125_3258301_-|DUF1343-domain-containing-protein
MFKTLFITLFFIFSAICISSAQANEANNSLVVGAQQYAKYLPQLKNKRIGLVVNQTSTVGQAHLVDALLTKNINITKIFAPEHGFRGDHDAGAHVKNAVDSKTGIPLISIYGKNKKPSQAALADVDVIIFDIQDVGVRFYTYISSMHYMMEAAAEQGIEFLVLDRPNPNIAYVDGPILEPEFKSFVGMHPIPVLHGMTVGELAKMIKGEGWINKAPDLKLTVIPVDHYTRKSTYSLPVKPSPNLPNDQAIALYPSLCFFEATPISIGRGTDFAFQVIGYSPVALGDFNFTPRAIKGAALNPKFKNQAVQGLDLRQANITGLNLTYLINAYTELSKNNISFFERADFMDKLAGTNKLRLAIEAGQSEAQIKQSWQAGLAQFKAQRAPYLLYK
>NZ_CP011025.1|WP_010553259.1|3255457_3257116_-|penicillin-binding-protein-PBP4B
MFIALKNQRCSYIKKVFIATLSLIVVGCSIPPEPISSVLPLTKSQLVKLPNAQVVVTFPEVNPSSRFYVNNRGTFKAYKGRGQLLIQNHNAQSADIYINNQKLDVNQLSANTLYNYSLAKNTHNGVNTFKVENIFPVGASLTLRFAFPTLSDEPKKHIDFTEVDTLIERDVKAGFPGAVLAVVKNGELIKLTAYGDAKQYQQSDLMLLRPEPMQTNTLFDLASNTKIFATNFALMKLVSEGLLNINKPVQSYLSEYKGEGRAKRTVKDLLTHSAGYPPVFDFHRKDGSYGDAFYSQNSKTTKQLLLTSVPFSSKSSGQHVYSDIDYMILGVLIERITGQPLDEYLEQQVYAPLKLTNTLFNPLKKGFKPQQFAATELSGNTRDGRIKFDNVRTGVLQGQVHDERAYYSLDGVAGHAGLFSNAQDLAVLCQLLLNSGGYGDQQLFSASALAQFLTPQSSDETYGLGFRLAGNNQARRWHFGPYASAQAYGHTGWTGTVTVIDPAYDLAIVLLTNARHSAIKGSLKRYEFTGKQFETAQYGSVVSLIYEALLNQ
>NZ_CP011025.1|WP_010553258.1|3253889_3255266_-|sodium:proton-antiporter
MHWYSILPPLIAIAIVFWRKEVIMALLVAVASSEFLLAFQGEGNSFFDTFLNTIERIISVASSPGNTRILIFSILIGALLAYIRESGGVAATVNMLMNKGIAKSKRQVGFLTMFTGIAVFIESNLSVLTSGILSRGLFDKFKMSRARLAYIIDSTSAPVCILILLNGWGAFVLGLLGNYELGESAVSVLWGSVGYNFYAIITLAIVFYTIAFDKVHGPMKEAEEKLELQTTDLKDEIKASKARYMLIPLITLITSMVGFMYYTGNGVLAEGSGSKSVLYATVLAIVVAYFLMIGSRKFTHHQLVDTGFKGMGELMPLVAIVLLSLTLGASLKELGTGVFVASLVGDYLPIYLIVPVLFLTGAVMSFTTGTSWGTFAILIPIGVPLIQALGLPPSLVVGAILGGGIFGDHCSPISDTSAVSAIASGCDLLTHVKTQLPYALFGGGLTFLAYLVTSIIVL
>NZ_CP011025.1|WP_010553257.1|3251894_3253637_-|potassium/proton-antiporter
MFAIDNIILVSAILILLGVISSKLSARVGLPVLVLFLLVGMLAGEDGIAGISFDNAEAAHALGTLALAIILFDGGLQTPTSSIKQVWKPASALATVGVLFTAVITGLVATYILDLPILQGVLLGAIVGSTDAAAVFALLRSAGIHLNKKLKSTLEIESASNDPMAIFLTVGLLEMLVNDMPIGLDLLQLFAQQMGVGAICGLLIGKVSVWFINRIKLNASGLYLVMVTAFGLLSFGLSATLGGSGFLAVFITGVILGNSKFVYKRGIFLFHDGLAWLGQITMFVVLGLLINPSSLVDVWLEGLLIALALIFVARPLAVAPILKLFGFNNRETLFVSWVGLRGSVPIILAIFPLLFGLSGAELIFNVVFFVVLISATLQGSTMPWMAKKLNLVEPPPDLAAATLEITALNDIDIEIVEYTLSDVSRVSGRSLSHAALPESVVVAMITRGPSIIPPRGSTKLKANDHLFVVLKPDNRPFVDLVFTATDKTNHQDSHLAHNELKVKGVTLVGDIFYSYHMQIDAPEEISLEEVINQTLSGEVSKGDIVVIGNVQIRVITMVHTRIVTIGLKYLNNPEKRLLKP
>NZ_CP011025.1|WP_010555535.1|3250823_3251810_+|IS110-family-transposase
MKAFIGIDVGKDKLDISWLRDVVKSKKKTKIFKNNPQGYQELVAWLIKNTNLEAQDIVITTEPTGVYSEPLMYFLYEQGFILLHVNPGKAKQYASSLGLVHKTDKSDATMLARYGHDQQHSLLSWQPEPVEARELKVMTRRLEALEQDLRREENRYEAVGFSGASTRVTQSIEDMIAVLKTEIGKLKNDIDEHIDRHPQLKKNRQLLQSIKGVGEVISRMMVSLMACKQFKNAKQLACYLGLIPKLNESGKRAGKTTLSKEGPGYIRAKLYMAAVVAVQHNPDIKAQNKRLVEQGKTKMQAIGAAMRKLTHICFGVVKNQTEYQPQAI
>NZ_CP011025.1|WP_010555500.1|3248930_3249887_-|RNA-directed-DNA-polymerase
MAQKLFSKLIDILPLVSASRSKIERFSLTAPNRYKVYSIPKRTSGRRIIAHPSKELKIYQRALLSSLEYLLDSHDSAYAYKKDRNIKANAKRHVRKKYLLKMDFNDFFNSITPDMLFTQFVKEEVIFSEAEKRLLKNLLFWNKTKSFDGKMVLSVGAPSSPSVSNFIMKEFDEFVYRYSKEKSIIYTRYADDLTFSTNKKDTLFDMPNFIKKVLGEVFEHKLTINESKTIYTSMAHNRHVTGVTLTNKSTLSIGREKKRLISLLVHKYKINEIDESDFNYLHGLLSFSHHIEPSFTKRLSKKYGSDILKNIIKGIYCE
>NZ_CP011025.1|WP_010555499.1|3247285_3248938_-|AAA-family-ATPase
MSSDFNHDKTINKLAKKAKSGNFFSAIELSNYYNIGRFVSKNKEKSDYYNGLAYSYFNTQSVKLKKIKINNFRLFEKGIGIEGFDEHLNIFVGNNGAGKTSILDAISLSLSWLSISINKNGGSGEYVDMGDINNYSDIPYASVASVIELNKSISASLELSQAREGTTKIKNKLHEFKIVGDFYKIANGFNSDFNMPLLAYYNVMRSYDVNPKDFKGLDDLYESTVTDKFDAYQKSLTGKTDFKAFIKWYKKSDDILNRRKVNNNRSAVLSELGITEETVDFLKSISLGNANAKKSLGEINTALTKNEPVLSDDDNLKRNKEIIDKVINIFMDGYTDIEVQLEPMIDLIIKKNDKKISVMKLSQGEKTLLSLVLDIARRLIILNPSLDNPLRGSGIVLIDEFDLHLHPLWQRHMAKNLINTFPNCQFFLTTHSPIVLSEVDRKHVYILSNTESGHTVIDRPSQTFGLTANEILNELMTPDDISQLVRSQYVEKELEEIFDLLDQESATALNSAKGKINNLEQLLHGDIPELVKAKTQMELIKDWLEDCEKD
>NZ_CP011025.1|WP_010555498.1|3246651_3247299_-|TIGR02646-family-protein
MKKIEKLGEPRQLTEYRSKPGAIYDGPNFTSVKNDIKKQLLKEQGHLCAYCMARVKISEMKVEHFLCQTENDKEQLNYKNLLGCCKGGEGNKPRNQTCDTRKGSKSILFSPANQAYNIESKIKYSTTSGKISSSDTIFNRQINDVLNLNFSRLITNRIKALEGVENFLNKKAGRRNKAEIQKVIETYKSKNANDKFKEYNAYILHYLNIKLARLK
>NZ_CP011025.1|WP_010555497.1|3245947_3246571_+|hypothetical-protein
MNKPDEPFDQKLTQHYKERKARTTLTSAQQKALLNKATNTKPKKFGFTLQLTNLACALGVFAFIVFDNNNVINTEPKTVLNSVFNTIDIHDYSIIKTHEINQAGSYASSITEQKHALDSQLANDLRRHQQRHIEYGTLVKVDNDWYIASCNDEVLVQIKHSLLSDLKGKHAVESNINTGDMLAMAHNGKGQIIALKHAGAGVRQCGA
>NZ_CP011025.1|WP_033012886.1|3245352_3245961_+|sigma-70-family-RNA-polymerase-sigma-factor
MLLSIKSWLFETPSKDCMASYAKSGDNRYLEQLIALYSNDLYHYLVTQSNTHLAYDVSQQTWLKVIEKRHLYQAQTTPKAWLFKLARNTLIDEYRRQQHFVELDENTHLAAQNDKSENDLTSGNSHIDNLNIGSSNISYKAFDAALKQLSFVQREAITLQQEGFSLADIELITQSSLETIKTRLRYAKQNLKRLLGANNEQA
>NZ_CP011025.1|WP_010553261.1|3260403_3260586_-|hypothetical-protein
MKDKRVDDLSEECTSEQERNAYYRACIAEFQQLGYQEQYLAQLTDDLVPVLGVNPSNKNT
>NZ_CP011025.1|WP_007583775.1|3260910_3262446_-|lysine--tRNA-ligase
MTDKIQDENKLIAERRGKLDAIRENCPANGHPNQFRREHYTADLQAQFGDKSKEELVEMQEVVSIAGRILAKRGPFFVIQDMKGRVQAYASKDVQKDLKEKYGQLDTGDIIGVKGALNKSGKGDLYVEMTEYQLLTKSLRPLPEKFHGLSDQETKYRQRYVDLITNEATRETFRIRSQVVEGIRRFLADRDFMEVETPMLQVIPGGASARPFVTHHNALDIDMYLRIAPELYLKRLVVGGFDRVFEINRNFRNEGLSTRHNPEFTMIEFYQAYADYIDLMNITEDMLRTVAENVLGSAVVVNTTKDENGEVIDSVEYDFGQPFTRLSMSDAILKYNPEFDAAVFNDPENHFDELKAYAKQVHVKIPENCVWGPGKFLCEIFEETAEHMLIQPTFITGYPWEVSPLARRNDENAFVTDRFEFFVGGRELANGFSELNDAQDQAERFTRQVEEKDAGDDEAMHYDEDYIRALEYGLPPTAGEGIGIDRLVMLFTDSSTIKDVILFPHMRPQAD
>NZ_CP011025.1|WP_096058065.1|3262472_3263571_-|peptide-chain-release-factor-2
MFEVNPVINQIKEIRERTELLRGYLDYALKQERLEEVNAELEDSAVWNEPERAQALGREKSALEAVVETIDNLVAGTDDVEGLLELAVEAEDQDTFDEAQSELTDLNEQLEGLEFRRMFSGPHDSNDAYLDLQSGSGGTEAQDWCNILLRMYLRWGEAKGFKVELVEATDGDVAGIKGATVRFVGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFVYPEVDDNIEIDMNPSDLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNERSQHKNKAQAMKQLKAKLFELELQQQNAEKQTQEDAKSDIGWGSQIRSYVLDDARIKDLRTGVENRNTQSVLDGNLDKFIEASLKSGL
>NZ_CP011025.1|WP_007583770.1|3263714_3265436_-|single-stranded-DNA-specific-exonuclease-RecJ
MKKLIIARENVDDSHLPSNLHPVIKQIYANRNVFNAEELNNSVATLHDFKLFKDIDKASDLLIEALKAQSQILIVGDFDADGATSTATLMQGLEMFGFKHLDYLIPDRFSLGYGLSPALAEQIVQIKPDLVITVDNGISCIAGIDILKAVGIKVLVTDHHLQGEQLPNADAIVNPNRHECDFPSKSIAGVGVAFYLLIALRSVMRDLGYFEQQPPPNLANLLDIVALGTVADVVALDANNRTLVHQGLARIRSGKTRPGITALIEVANRNAARLSASDFGFSLAPRLNAAGRLDDMSLGIACLLSTDINQARSIAGELDSLNFARREIEQGMQAEAQAVLDRLAFSDDNIPDAICLFQDDWHQGVIGILAGRLKEKYHRPTVIFAGGENGEIKGSCRSIEGLHMRDLLEGLNTADPHLINKFGGHAMAAGLSINEQHFNDFKKAFDAAVSAQLSEESKRCIVFTDGELPNDCFTMEFAQLLKQSGPWGQQFPEPVFEHTFEVIQQRIVGEKHLKLVLKHQSGRLVDAIAFGIDVKEWPDTEAKFVKVAYQLDINEFRGKFTLQLIVRELEKVH
>NZ_CP011025.1|WP_007583768.1|3265517_3266246_-|bifunctional-protein-disulfide-isomerase/oxidoreductase-DsbC
MKKLMLAGAMLCTSISAFANGVAVTPDANDPIITKFAELGVTVKQINPSPVTGLKELITNKGVLYASPDGQYLMQGTLIDLNNRNNLTEQALNGVRVEGLKEYEESMIVYKAPNEKHSITVFTDISCGYCRKLHRELDDLLDAGITVKYLAFPRGGLQGSGYADLMNVWCARDQQEALTEAKSGTSTKVVAGCSAPVAEHYQLGQSFGISGTPAIILEDGTMIPGYQPAAALKAALEANKAS
>NZ_CP011025.1|WP_024590718.1|3266309_3267236_-|site-specific-tyrosine-recombinase-XerD
MTTLSDDSFENNSSMSSNSDYLETFLDSLYLEQGVSENTLSAYRSDLDKFCLFLKGENLMTVTGLDVESYLAHRVDLGLKPRSTARSISALKRFYQYFVREKLISDTPMLNISQPKAGQSLPKTLSEAEVEALLNAPNTEEAMGLRDKAMLELLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAMYWLEQFLKGGRAQMIKHATDFVFPSKRGVGMTRQTFWHRIKHYAILAAVESPLSPHTMRHAFATHLLNHGADLRVVQMMLGHSDLSTTQIYTHVANERLKSVHAEHHPRA
>NZ_CP011025.1|WP_007583764.1|3267330_3267852_+|flavodoxin-FldB
MQIGLFFGSTTCYTEMAAEKIRDIIGADIVTLHNIKDEPLKNAEQYDFIIFGISTWDFGEIQEDWESKWDDIADVNLNGKTIALFGMGDQQGYGQWFQDALGMLHDEINTQTFTQLGFWPNDSSYEFEASKALTPDGKQFVGLALDEDSQYELSDDRIATWVEQVMTEYGETL
>NZ_CP011025.1|WP_010553263.1|3268196_3268664_-|YHS-domain-containing-protein
MIKYIVALIMLSTLLISGAANAKDDAVNTGWFNNTAIKGYDSVAYFTQNKAVKGSDKYTFSYLGANWHFSSEENKTTFAENPKRYAPQYGGWCAYAMADEGNAVGIDPEAFYIHEGKLYLNYSESVQQKWLSNLLPYIVMADGYYPQTTNVMTFQ
>NZ_CP011025.1|WP_010553264.1|3268801_3269248_-|DUF2147-domain-containing-protein
MKNLNKLALLSTLAATIFASQGVFAAITPVGLWKTIDEDTNQAKSYVRITQTNGVLSGKVETILNPAKQNDICSKCDNELKDQPILGMTIITGVKAQDDGVWGDGEILDPTNGKTYTLQLTPQDEGKKLEVRGYIGFFYRNQYWLKVE
>NZ_CP011025.1|WP_007583759.1|3269415_3271125_-|DUF4153-domain-containing-protein
MDSQLPKSFIIILAVLQAIALTLLYSSIENNVWPATSPTWLVSLITFSMSFPLLMLMTVNKNNIKTSLLLILPFSLLLSLLGAYVGFQQEPQEYVSNNTLMSVFIFTSLIAGFKGLMYIQQFGSSENVSYSRLFKLSWRNFIIFGECWLFVLIFWGILNLGAALFDILDIEFFSELLRNEWFWIPTLTLAFAFASVIFRKLLNIEDNIAFLLQTLIKFLLPVLSVISLGFLATLPFTGLNKLWETGSGSLLVMWLQVLTLFFVNTVYKDDSSVRPYHMLLHRLVFISVALLPVYSVISAYGIYLRVEQHGLTVDRCWGILIWFLLACFSFSYLVGIITKRDNWLEPLSKINIVMGWVVLVSMLAVNSPLLNFQSLSTNSQIARLDADKVTIEKFDYYYFEHSLGRQGYLAMQLLKQKIETSHPEQYAIIDRMYVNNEFALTLEHTVDDFIERSVFWPSQALIPQGLIEAVFSEQHFYDRNSLKEHTYYFIGMDLNKDDELDFIVIDESNENISAYFWLFDMGKWRSRYMNVENPEEIRYLKSMIDNNELSLVEPEYSNLKIGDVVFKVR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011025_4	4.1\|1310393\|51\|NZ_CP011025\|CRISPRCasFinder	1310393-1310443	51	NZ_CP011025.1	1310633-1310683	0	1.0

1. spacer 4.1|1310393|51|NZ_CP011025|CRISPRCasFinder matches to position: 1310633-1310683, mismatch: 0, identity: 1.0

tcatcaacaggggcatcagtttgtggctcttcactcacggactgctcagcg	CRISPR spacer
tcatcaacaggggcatcagtttgtggctcttcactcacggactgctcagcg	Protospacer
***************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1489390 : 1523926

Pseudoalteromonas_phage(28.57%)

head,capsid,tail,terminase,integrase,portal

attL 1485884:1485898|attR 1506500:1506514

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1485884:1485898	attL	NA	NA	NA	NA
WP_010553441.1\|1489390_1490605_+\|integrase	site-specific integrase	K7P7J2	Enterobacteria_phage	1.5e-64	36.7
WP_010553442.1\|1490901_1491186_+	hypothetical protein	NA	NA	NA	NA
WP_010553444.1\|1491718_1493605_-	acyltransferase	A0A193GZ69	Enterobacter_phage	6.0e-81	35.0
WP_010553445.1\|1493690_1494329_-	helix-turn-helix domain-containing protein	U5P0T5	Shigella_phage	4.9e-35	47.0
WP_010553446.1\|1494481_1494700_+	hypothetical protein	NA	NA	NA	NA
WP_010553447.1\|1494696_1494990_+	hypothetical protein	NA	NA	NA	NA
WP_010553448.1\|1495000_1495273_+	hypothetical protein	A0A1L5C2B4	Pseudoalteromonas_phage	1.4e-15	54.4
WP_010553449.1\|1495275_1495662_+	hypothetical protein	A0A1L5C285	Pseudoalteromonas_phage	3.4e-23	48.7
WP_010553450.1\|1495664_1496264_+	hypothetical protein	A0A067ZG73	Vibrio_phage	2.0e-38	42.2
WP_010553451.1\|1496263_1496578_+	hypothetical protein	NA	NA	NA	NA
WP_010553452.1\|1496598_1496877_+	hypothetical protein	A0A1L5C2B9	Pseudoalteromonas_phage	1.3e-19	51.6
WP_010553453.1\|1496879_1500011_+	replication endonuclease	A0A1L5C2A7	Pseudoalteromonas_phage	0.0e+00	81.5
WP_010553454.1\|1500019_1500286_+	hypothetical protein	A0A1L5C294	Pseudoalteromonas_phage	8.6e-42	92.9
WP_010553455.1\|1500282_1500570_+	hypothetical protein	NA	NA	NA	NA
WP_010553456.1\|1500556_1500955_+	hypothetical protein	NA	NA	NA	NA
WP_021032028.1\|1501169_1501532_+	hypothetical protein	A0A2I7RHM8	Vibrio_phage	3.1e-18	55.8
WP_010553458.1\|1501594_1501840_-	ogr/Delta-like zinc finger family protein	A0A1L5C2B5	Pseudoalteromonas_phage	4.2e-35	90.1
WP_010553459.1\|1502183_1502435_+	hypothetical protein	NA	NA	NA	NA
WP_010553460.1\|1502489_1502834_+	hypothetical protein	NA	NA	NA	NA
WP_010553461.1\|1502852_1503308_-	hypothetical protein	NA	NA	NA	NA
WP_010553462.1\|1503307_1503634_-	hypothetical protein	NA	NA	NA	NA
WP_010553463.1\|1503630_1504695_-\|portal	phage portal protein	A5X9H1	Aeromonas_virus	6.3e-59	43.6
WP_010553464.1\|1504694_1506479_-\|terminase	terminase	R4JDJ3	Burkholderia_phage	3.7e-120	40.8
WP_010553465.1\|1506671_1507553_+\|capsid	phage capsid scaffolding protein	Q94MZ5	Haemophilus_virus	3.9e-22	29.4
1506500:1506514	attR	NA	NA	NA	NA
WP_010553466.1\|1507595_1508633_+\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	3.1e-71	47.1
WP_010553467.1\|1508708_1509449_+\|terminase	terminase	NA	NA	NA	NA
WP_010553468.1\|1509557_1509995_+\|head	head completion/stabilization protein	NA	NA	NA	NA
WP_010553469.1\|1509991_1510465_+	hypothetical protein	NA	NA	NA	NA
WP_010553470.1\|1510457_1511090_+	hypothetical protein	A0A1D9C9S1	Salinivibrio_phage	1.7e-16	33.0
WP_010553471.1\|1511113_1512214_+	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	6.0e-65	39.8
WP_010553472.1\|1512222_1512672_+	DUF2597 family protein	A0A1L5C2D0	Pseudoalteromonas_phage	2.8e-29	42.1
WP_010553473.1\|1512671_1513292_+	hypothetical protein	NA	NA	NA	NA
WP_010553474.1\|1513294_1513582_+	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	1.7e-11	40.4
WP_033012577.1\|1513750_1516885_+\|tail	phage tail tape measure protein	R9TRA2	Vibrio_phage	5.5e-87	38.3
WP_010553476.1\|1516884_1517211_+	DUF2590 family protein	A5X9J0	Aeromonas_virus	1.5e-11	38.5
WP_010553477.1\|1517200_1518349_+	hypothetical protein	A0A1L5C2D1	Pseudoalteromonas_phage	4.2e-61	36.6
WP_010553478.1\|1518341_1519052_+	hypothetical protein	A0A0U4JVX3	Pseudomonas_phage	1.1e-27	43.9
WP_010553479.1\|1519048_1519627_+\|tail	tail fiber protein	A0A0U4K5K2	Pseudomonas_phage	1.4e-20	36.0
WP_010553480.1\|1519623_1520841_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	D4HTV7	Vibrio_phage	2.7e-135	65.9
WP_010553481.1\|1520907_1521195_+	hypothetical protein	Q8H9M8	Vibrio_phage	3.9e-24	62.6
WP_050576403.1\|1521235_1521817_+	hypothetical protein	NA	NA	NA	NA
WP_002960001.1\|1521813_1522299_+	hypothetical protein	NA	NA	NA	NA
WP_010553483.1\|1522295_1523000_+	hypothetical protein	A0A2I7RNK1	Vibrio_phage	1.3e-23	30.8
WP_010553484.1\|1522972_1523926_+	hypothetical protein	A0A0U4IBV2	Pseudomonas_phage	3.7e-26	28.4

DBSCAN-SWA_2

1676391 : 1738851

Orpheovirus(20.0%)

protease,tRNA,integrase,transposase

attL 1717148:1717164|attR 1746475:1746491

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010552587.1\|1676391_1677414_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_010552588.1\|1677410_1678394_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_010552589.1\|1678446_1678905_+	hypothetical protein	NA	NA	NA	NA
WP_010552590.1\|1679359_1681918_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
WP_010552591.1\|1681994_1682198_-	hypothetical protein	NA	NA	NA	NA
WP_010552592.1\|1682369_1683857_-	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA	NA	NA	NA
WP_010552593.1\|1683879_1692708_-	cyclic beta 1-2 glucan synthetase	NA	NA	NA	NA
WP_010552594.1\|1693356_1694094_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_010552595.1\|1694234_1694426_-	DUF2934 domain-containing protein	NA	NA	NA	NA
WP_010552597.1\|1694966_1695692_+	haloacid dehalogenase	NA	NA	NA	NA
WP_010552598.1\|1695866_1696682_-	PRC-barrel domain-containing protein	NA	NA	NA	NA
WP_010552599.1\|1697317_1698445_+	magnesium/cobalt transporter CorA	NA	NA	NA	NA
WP_008168384.1\|1698625_1698865_+	SHOCT domain-containing protein	NA	NA	NA	NA
WP_021032118.1\|1698950_1701320_+	phosphoketolase family protein	NA	NA	NA	NA
WP_010552601.1\|1701316_1702774_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_029880342.1\|1702733_1703141_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_010552603.1\|1703161_1703533_+	hypothetical protein	NA	NA	NA	NA
WP_101163441.1\|1703516_1703855_+	ATP synthase subunit I	NA	NA	NA	NA
WP_010552605.1\|1703838_1704528_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_010552606.1\|1704562_1704844_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_010552607.1\|1704847_1705648_+	ATP synthase subunit B	NA	NA	NA	NA
WP_010552608.1\|1705647_1707228_+	alternate F1F0 ATPase, F1 subunit alpha	NA	NA	NA	NA
WP_010552609.1\|1707224_1708112_+	hypothetical protein	NA	NA	NA	NA
WP_084201284.1\|1708959_1710006_-	DUF3080 family protein	NA	NA	NA	NA
WP_010552611.1\|1709986_1711357_-	MATE family efflux transporter	NA	NA	NA	NA
WP_007585130.1\|1711485_1712112_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	1.8e-21	40.0
WP_008166246.1\|1712113_1712317_-	CPXCG motif-containing cysteine-rich protein	NA	NA	NA	NA
WP_010552612.1\|1712420_1713293_-	fructosamine kinase family protein	NA	NA	NA	NA
WP_010552613.1\|1713416_1714109_+	hypothetical protein	NA	NA	NA	NA
WP_007585117.1\|1714388_1715174_+	hypothetical protein	NA	NA	NA	NA
WP_010552614.1\|1715274_1716657_+	amidohydrolase	NA	NA	NA	NA
WP_010552615.1\|1716669_1717911_+	amidohydrolase family protein	NA	NA	NA	NA
1717148:1717164	attL	NA	NA	NA	NA
WP_010552616.1\|1718025_1720248_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_002962500.1\|1720773_1720992_-	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	7.3e-15	58.2
WP_010552617.1\|1721192_1721510_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.5e-13	38.3
WP_007585108.1\|1721578_1723840_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.8e-164	40.8
WP_002962494.1\|1724054_1724273_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_010552618.1\|1724363_1725068_-	arginyltransferase	NA	NA	NA	NA
WP_010552619.1\|1725060_1725777_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_008168643.1\|1725874_1726825_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.0e-60	41.7
WP_010552620.1\|1727123_1728449_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_010552621.1\|1728568_1729690_-	alanine dehydrogenase	NA	NA	NA	NA
WP_007582985.1\|1729832_1730312_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_010552622.1\|1730485_1732981_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	4.2e-90	49.6
WP_007582981.1\|1732980_1733607_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_010552623.1\|1733599_1734943_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	9.3e-76	37.7
WP_021032117.1\|1734935_1735316_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.1e-09	38.5
WP_008168632.1\|1735325_1736630_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-92	51.0
WP_010552625.1\|1737059_1737899_+\|integrase	site-specific integrase	I3ULU8	Synechococcus_phage	8.8e-08	28.6
WP_010552626.1\|1737909_1738851_+\|transposase	IS91 family transposase	NA	NA	NA	NA
1746475:1746491	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2983674 : 2991830

uncultured_Mediterranean_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007584792.1\|2983674_2984718_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	3.8e-117	64.5
WP_010554445.1\|2984786_2985275_-	nicotinamide-nucleotide amidohydrolase family protein	B5TK85	Pseudomonas_phage	3.5e-25	41.8
WP_010554444.1\|2985296_2987882_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.1e-36	26.0
WP_010554443.1\|2987973_2988948_-	RNA polymerase sigma factor RpoS	A0A2I7SAT0	Vibrio_phage	7.8e-32	30.1
WP_010554442.1\|2988983_2989808_-	peptidoglycan DD-metalloendopeptidase family protein	G3MBP9	Bacillus_virus	6.9e-05	36.0
WP_007584782.1\|2989849_2990428_-	DedA family protein	NA	NA	NA	NA
WP_007584780.1\|2990437_2991076_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.5e-36	51.5
WP_007584778.1\|2991065_2991830_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.5e-70	53.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP011027

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22916 : 61903

Bacillus_phage(28.57%)

integrase,transposase

attL 28442:28501|attR 66690:67060

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_096058044.1\|22916_24462_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.8e-10	26.6
WP_010555469.1\|24677_25037_+	hypothetical protein	NA	NA	NA	NA
WP_010555470.1\|25008_28311_+	hypothetical protein	NA	NA	NA	NA
28442:28501	attL	NA	NA	NA	NA
WP_096058083.1\|28802_28931_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_010555472.1\|28927_29233_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_010555473.1\|30095_30329_-	replication initiation protein	NA	NA	NA	NA
WP_010555474.1\|30731_31145_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	3.0e-25	42.2
WP_010555477.1\|32701_33697_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	1.1e-44	34.3
WP_010555478.1\|33705_34197_+	hypothetical protein	NA	NA	NA	NA
WP_010555479.1\|34593_35070_+	hypothetical protein	NA	NA	NA	NA
WP_010555480.1\|35156_35573_+	hypothetical protein	NA	NA	NA	NA
WP_010555481.1\|35836_36277_+	hypothetical protein	NA	NA	NA	NA
WP_010555482.1\|36539_38696_+	AAA family ATPase	NA	NA	NA	NA
WP_158522947.1\|39281_39422_-	hypothetical protein	NA	NA	NA	NA
WP_010555485.1\|39768_40320_-	cytochrome b	A0A0U2QLA7	Escherichia_phage	9.5e-19	40.2
WP_010555486.1\|40794_41520_+	NYN domain-containing protein	A0A2P0VNQ4	Tetraselmis_virus	6.0e-05	29.4
WP_010555537.1\|41894_42728_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	7.7e-12	28.7
WP_096058057.1\|42724_43816_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_021031995.1\|44204_44639_+	hypothetical protein	NA	NA	NA	NA
WP_010554777.1\|44687_45203_+	hypothetical protein	NA	NA	NA	NA
WP_010554776.1\|45562_46336_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_010554775.1\|46710_48579_-	hypothetical protein	NA	NA	NA	NA
WP_010554774.1\|49161_49995_+	HNH endonuclease	NA	NA	NA	NA
WP_010554773.1\|50020_50584_+	hypothetical protein	NA	NA	NA	NA
WP_010554772.1\|50821_51862_+	nucleoid-associated protein	NA	NA	NA	NA
WP_010554771.1\|51861_53061_+	hypothetical protein	NA	NA	NA	NA
WP_010554769.1\|53674_54241_-	hypothetical protein	NA	NA	NA	NA
WP_010554768.1\|54369_54759_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_010554767.1\|54838_55456_+	cation transporter	NA	NA	NA	NA
WP_084201255.1\|58903_61903_+\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	4.7e-35	20.6
66690:67060	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011026

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP011025

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP011027

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection