CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_016846	Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2, complete sequence	0 crisprs	RT	0	3
NC_016840	Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS4, complete sequence	0 crisprs	NA	0	0
NC_016847	Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS5, complete sequence	0 crisprs	NA	0	0
NC_016845	Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome, complete genome	3 crisprs	cas3,DEDDh,WYL,DinG,RT,csa3	1	12
NC_016839	Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS3, complete sequence	0 crisprs	DEDDh	0	2
NC_016841	Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS6, complete sequence	0 crisprs	NA	0	0
NC_016838	Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS1, complete sequence	0 crisprs	RT,DEDDh	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016845_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016845_1

809985-810070

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016845_1

>merge|NC_016845|1|809985-810070|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>NC_016845|1|1|809985-810070|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_016845.1\|YP_005225073.1\|818624_819320_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NC_016845.1\|YP_005225068.1\|811560_811749_-\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225075.1\|820970_822680_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NC_016845.1\|YP_005225061.1\|801741_802731_-\|4-hydroxythreonine-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234696
NC_016845.1\|YP_005225057.1\|798955_799435_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NC_016845.1\|YP_005225065.1\|807529_808228_-\|two-component-response-regulator	unknown	unknown	gnl\|CDD\|226931
NC_016845.1\|YP_005225074.1\|819457_820960_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NC_016845.1\|YP_005225060.1\|800923_801745_-\|dimethyladenosine-transferase	unknown	unknown	gnl\|CDD\|234708
NC_016845.1\|YP_005225067.1\|810167_811532_+\|citrate/acetate-antiporter	unknown	unknown	gnl\|CDD\|377030
NC_016845.1\|YP_005225070.1\|812325_812985_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|236659
NC_016845.1\|YP_005225062.1\|802736_804023_-\|peptidyl-prolyl-cis-trans-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NC_016845.1\|YP_005225064.1\|806669_807497_+\|DNA-J-like-membrane-chaperone-protein	unknown	unknown	gnl\|CDD\|236512
NC_016845.1\|YP_005225066.1\|808217_809843_-\|two-component-sensor-kinase	unknown	unknown	gnl\|CDD\|225827
NC_016845.1\|YP_005225072.1\|816091_818449_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NC_016845.1\|YP_005225058.1\|799690_800539_-\|diadenosine-tetraphosphatase	unknown	unknown	gnl\|CDD\|273208
NC_016845.1\|YP_005225071.1\|812997_815841_-\|ATP-dependent-helicase-HepA	unknown	unknown	gnl\|CDD\|235319
NC_016845.1\|YP_005225059.1\|800543_800921_-\|putative-cytoplasmic-protein	unknown	unknown	gnl\|CDD\|180098
NC_016845.1\|YP_005225063.1\|804077_806393_-\|organic-solvent-tolerance-protein	unknown	unknown	gnl\|CDD\|235158
NC_016845.1\|YP_005225076.1\|822861_823032_-\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225069.1\|811711_812251_+\|phosphoribosyl-dephospho-CoA-transferase	unknown	unknown	gnl\|CDD\|163145

Protein	Function_ID	Function_description	E-value
NC_016845.1\|YP_005225073.1\|818624_819320_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NC_016845.1\|YP_005225069.1\|811711_812251_+\|phosphoribosyl-dephospho-CoA-transferase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NC_016845.1\|YP_005225075.1\|820970_822680_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NC_016845.1\|YP_005225061.1\|801741_802731_-\|4-hydroxythreonine-4-phosphate-dehydrogenase	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NC_016845.1\|YP_005225057.1\|798955_799435_+\|dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NC_016845.1\|YP_005225065.1\|807529_808228_-\|two-component-response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NC_016845.1\|YP_005225060.1\|800923_801745_-\|dimethyladenosine-transferase	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NC_016845.1\|YP_005225067.1\|810167_811532_+\|citrate/acetate-antiporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NC_016845.1\|YP_005225070.1\|812325_812985_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NC_016845.1\|YP_005225062.1\|802736_804023_-\|peptidyl-prolyl-cis-trans-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NC_016845.1\|YP_005225064.1\|806669_807497_+\|DNA-J-like-membrane-chaperone-protein	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NC_016845.1\|YP_005225066.1\|808217_809843_-\|two-component-sensor-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NC_016845.1\|YP_005225072.1\|816091_818449_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NC_016845.1\|YP_005225058.1\|799690_800539_-\|diadenosine-tetraphosphatase	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NC_016845.1\|YP_005225071.1\|812997_815841_-\|ATP-dependent-helicase-HepA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NC_016845.1\|YP_005225059.1\|800543_800921_-\|putative-cytoplasmic-protein	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NC_016845.1\|YP_005225063.1\|804077_806393_-\|organic-solvent-tolerance-protein	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NC_016845.1\|YP_005225074.1\|819457_820960_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0

>NC_016845.1|YP_005225066.1|808217_809843_-|two-component-sensor-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NC_016845.1|YP_005225065.1|807529_808228_-|two-component-response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NC_016845.1|YP_005225064.1|806669_807497_+|DNA-J-like-membrane-chaperone-protein
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NC_016845.1|YP_005225063.1|804077_806393_-|organic-solvent-tolerance-protein
MIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NC_016845.1|YP_005225062.1|802736_804023_-|peptidyl-prolyl-cis-trans-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NC_016845.1|YP_005225061.1|801741_802731_-|4-hydroxythreonine-4-phosphate-dehydrogenase
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NC_016845.1|YP_005225060.1|800923_801745_-|dimethyladenosine-transferase
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NC_016845.1|YP_005225059.1|800543_800921_-|putative-cytoplasmic-protein
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NC_016845.1|YP_005225058.1|799690_800539_-|diadenosine-tetraphosphatase
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NC_016845.1|YP_005225057.1|798955_799435_+|dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NC_016845.1|YP_005225067.1|810167_811532_+|citrate/acetate-antiporter
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NC_016845.1|YP_005225068.1|811560_811749_-|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>NC_016845.1|YP_005225069.1|811711_812251_+|phosphoribosyl-dephospho-CoA-transferase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NC_016845.1|YP_005225070.1|812325_812985_-|RluA-family-pseudouridine-synthase
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NC_016845.1|YP_005225071.1|812997_815841_-|ATP-dependent-helicase-HepA
MVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NC_016845.1|YP_005225072.1|816091_818449_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NC_016845.1|YP_005225073.1|818624_819320_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NC_016845.1|YP_005225074.1|819457_820960_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NC_016845.1|YP_005225075.1|820970_822680_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NC_016845.1|YP_005225076.1|822861_823032_-|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP

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Click the colored protein region to show detailed information

Crispr_ID: NC_016845_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016845_2

1296458-1296553

Orphan

Consensus_repeat	Method
TTGTGCCAACAGAATGCCAACAAAGTGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016845_2

>merge|NC_016845|2|1296458-1296553|CRISPRCasFinder
TTGTGCCAACAGAATGCCAACAAAGTGCCAACGCAAACCCAGTAACCACGCTGCGTACCGGCGAGGTTGTGCCAACAGAATGCCAACAAAGTGCCA

>NC_016845|2|2|1296458-1296553|CRISPRCasFinder
TTGTGCCAACAGAATGCCAACAAAGTGCCA	ACGCAAACCCAGTAACCACGCTGCGTACCGGCGAGG
TTGTGCCAACAGAATGCCAACAAAGTGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016845.1\|YP_005225544.1\|1294559_1294928_-\|regulatory-protein-CI-bacteriophage-origin	unknown	unknown	gnl\|CDD\|225484
NC_016845.1\|YP_005225550.1\|1298382_1298676_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238042
NC_016845.1\|YP_005225558.1\|1305331_1305580_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368216
NC_016845.1\|YP_005225547.1\|1295924_1296071_+\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225540.1\|1292553_1292751_-\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225542.1\|1293326_1293452_-\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225556.1\|1302677_1303316_+\|putative-ninG-protein	unknown	unknown	gnl\|CDD\|368603
NC_016845.1\|YP_005225539.1\|1292248_1292584_-\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225555.1\|1302059_1302515_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NC_016845.1\|YP_005225543.1\|1293850_1293973_-\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225552.1\|1299292_1299424_+\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225538.1\|1291628_1292252_-\|putative-phage-like-protein	unknown	unknown	gnl\|CDD\|378216
NC_016845.1\|YP_005225549.1\|1296967_1298383_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|274672
NC_016845.1\|YP_005225551.1\|1298672_1299179_+\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225545.1\|1295350_1295578_+\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225554.1\|1300605_1301559_+\|Eaa1	unknown	unknown	gnl\|CDD\|367945
NC_016845.1\|YP_005225553.1\|1299416_1300091_+\|RelE-family-toxin-antitoxin-system	unknown	unknown	gnl\|CDD\|379401
NC_016845.1\|YP_005225557.1\|1303488_1303611_+\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225546.1\|1295617_1295839_+\|bacteriophage-CII-family-protein	unknown	unknown	gnl\|CDD\|336083
NC_016845.1\|YP_005225541.1\|1292762_1293047_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_016845.1\|YP_005225549.1\|1296967_1298383_+\|replicative-DNA-helicase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	9.32956e-159
NC_016845.1\|YP_005225558.1\|1305331_1305580_+\|hypothetical-protein	gnl\|CDD\|368216	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S. Phage_holin_2_1 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Members of this family fall into the holin superfamily II, and Phage 21 S holin is the prototype for this superfamily. It has two transmembrane segments with both the N- and C-termini on the cytoplasmic side of the inner membrane in E. coli. Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the build up of a holin oligomer which causes the lysis.	3.08705e-28
NC_016845.1\|YP_005225538.1\|1291628_1292252_-\|putative-phage-like-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	4.51441e-15
NC_016845.1\|YP_005225553.1\|1299416_1300091_+\|RelE-family-toxin-antitoxin-system	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	1.85184e-05
NC_016845.1\|YP_005225550.1\|1298382_1298676_+\|hypothetical-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000668668
NC_016845.1\|YP_005225554.1\|1300605_1301559_+\|Eaa1	gnl\|CDD\|367945	pfam04447, DUF550, Protein of unknown function (DUF550). This family is found in a range of Proteobacteria and a few P-22 dsDNA virus particles. The function is currently not known.	1.08165e-48
NC_016845.1\|YP_005225544.1\|1294559_1294928_-\|regulatory-protein-CI-bacteriophage-origin	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	6.09234e-19
NC_016845.1\|YP_005225556.1\|1302677_1303316_+\|putative-ninG-protein	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	1.46189e-56
NC_016845.1\|YP_005225546.1\|1295617_1295839_+\|bacteriophage-CII-family-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	1.55058e-09
NC_016845.1\|YP_005225555.1\|1302059_1302515_+\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.50704e-78

>NC_016845.1|YP_005225547.1|1295924_1296071_+|hypothetical-protein
MPKSNRFYQAQTHKNVTRDRFIRSVNPVVGMKMRAILEELKRKEEGRE
>NC_016845.1|YP_005225546.1|1295617_1295839_+|bacteriophage-CII-family-protein
MESSTTRNKVEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAILISNRPGEKGDFEA
>NC_016845.1|YP_005225545.1|1295350_1295578_+|hypothetical-protein
MAPNSLGEIIKKIRVPVVAEACGCSPRAIYKWIANGSLPRTDYTDETNYAEKIALASGGQFTAAQIREVSKPKAA
>NC_016845.1|YP_005225544.1|1294559_1294928_-|regulatory-protein-CI-bacteriophage-origin
MEILHSVEYAPAEARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDISVKSFDGDGIYAFLYDDTAHVKRLQKMKDKLLVISDNKSYAAWDPIEKDEMNRVFVFGKVIGSMPQTYRKHG
>NC_016845.1|YP_005225543.1|1293850_1293973_-|hypothetical-protein
MNKQQIIADMLKLADRLNEIVAGMEERKQTMLAEMHRKAA
>NC_016845.1|YP_005225542.1|1293326_1293452_-|hypothetical-protein
MLGWKMSKQGIRSLIYCLLICGVIWTALIIKILHFTGVFNG
>NC_016845.1|YP_005225541.1|1292762_1293047_-|hypothetical-protein
MNAYRAYDVIEERKWAEQTLDEEKEKWIEDRAKEVFDSLPEDPYVALRQSASSKAFPYEGLRSDKAVEVYNDLRTAIAYAQAEYDWDHRTGCPF
>NC_016845.1|YP_005225540.1|1292553_1292751_-|hypothetical-protein
MSESKTHYRKAFDSPYLSSADIVEPTVLTIARATLESDKTKKLKTFLTPLILRSASCALAKSLSQ
>NC_016845.1|YP_005225539.1|1292248_1292584_-|hypothetical-protein
MRPGEKLKPMILNATNSKMLKSITGSPFLEDWVGVKVTVYVDKNVRFGKESVEGLRLSPARVSKPVLSPEKTQAWNNAKAAFKRDGNLDAVLARMDISPEHRRQLEQECSA
>NC_016845.1|YP_005225538.1|1291628_1292252_-|putative-phage-like-protein
MIWHDVEQNGEEWDALRLGKATASNFGLIMANDGKAFGEPAKRYALQLALEQIKGCKSEFGFTNDHMERGHEQEPIARMLYEEMNFVDVDNGGFFDHETYGDSPDGLVGRDGLVEIKSVIAATHYATLTRGAFDPAYRWQLIGHLDCSGRDWVDFISYCSDFPDGKQLIVYRLTAAECQSEIARLRARRNEFLSLVAETKRMILEIE
>NC_016845.1|YP_005225549.1|1296967_1298383_+|replicative-DNA-helicase
MTPPHSIEAEQSVLGGLLLDDDNSERTQKVLSILKPESFYARPHQVIFAEMRQMYRDHKPVDLLTLFDALESKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNSDLQKATGVMGALIETNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKILAKELDCVVVLLTQLNRDLEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEQKPTKRGGF
>NC_016845.1|YP_005225550.1|1298382_1298676_+|hypothetical-protein
MTGKDAILNYLKTHKTCSSPDVAAASGMTHTCINQAANILAKQGVLVAEARVWRTVYYRLATEEEIAGRKSTNQIFNECRQSPAMKRVLAVYGRTSA
>NC_016845.1|YP_005225551.1|1298672_1299179_+|hypothetical-protein
MTITLQAVNKLIASMESAGELSIREQKFLKLAKEFRICSASLDAAIKTGNMLADQNAQLAAENVALKDINAWCKTDAFKNMYREFKTAEALGCSDADCMHDAMLVAIMHAPATPATDRIVAGIKADGVEEFAAKLRIPGDDQFFDALAKGIALAADDFAKQLREGADK
>NC_016845.1|YP_005225552.1|1299292_1299424_+|hypothetical-protein
MNPTGDDEVLRASCGCYEWDISMDYRSADIRYADKNKQEVQHD
>NC_016845.1|YP_005225553.1|1299416_1300091_+|RelE-family-toxin-antitoxin-system
MTDITELAQSLKAAAEKASNGDWVKESGDGWEACCSANDQANGGFIIAHFVGPDAAENREFVQAANPANVLALVEALEYYKSREERVTSLVRDNSKSWDELYRQVEAKGKRNVELVEALESEKRICATWRKTAEANSEKLEKAQQQMTESENRVRKQNRHICELFDDNTALRQRIAGLEARTVKLPDLRQIVSGDRYVWSDGVYNYSQDVKVALAAAGIKVEAE
>NC_016845.1|YP_005225554.1|1300605_1301559_+|Eaa1
MTNNQLAENSVIQLLNSVKLARDNAERADNRVDHSFYYALTIALEELQERRKAAMDSEQDCNERQLFCSTDTARMRKVISASAGTEDAPLYRHAQPASERDQVRSAHAEWSQATFGNVGPVGPLKHLSKEALEAAAEPGDLSEWADMQFLLWDAQRRAGITDEQITQAMIEKLAVNKQRKWPEPKDGEPRLHIKEQPAPVVLVIPDEMTSGQAYEIGYYYGDPVDVFARGANWMRQHIIDSTLAAAPQSPGSDPATVPGKWISVSERMPENDGAYLCWDNRYVTTYAFIFGAWQANQFIAKNITHWMPLPAGPQEVR
>NC_016845.1|YP_005225555.1|1302059_1302515_+|hypothetical-protein
MNIPQCGIKLHNGNFSAIGKILQEQLSDGKCLRLQVKEWREKRSLSQNALSHMWYAEISEYLINSGRTDATPEWVKRNLKKTYLGCEEVTYTDFITGEKTTTWEPRHTSDLDTGEMHIFLTKVEAWCAQFGLALTIPHGCEYQQLQQKQEA
>NC_016845.1|YP_005225556.1|1302677_1303316_+|putative-ninG-protein
MRKPARRKCAHCREWFHPAREGQVVCSFECASAIGKKQTAKAREAAKARAVKRQRESEKEGRQRRRAKRESFKTKAQWDKEAQSAFNRYIRIRDEGKPCVSCGNPLIGKSNYLTGSAIDASHYRSRGAASHLKFNVFNVHSACTRCNRQLSGNAVEYRIHLIERIGLDRVERLEADNEPRRFDIPYLQRIKSIFTRKARALEKRRARQQEAA
>NC_016845.1|YP_005225557.1|1303488_1303611_+|hypothetical-protein
MTRDQIARYQAESVMRAKMPPVAKHSQNQTKTKQPLGEAA
>NC_016845.1|YP_005225558.1|1305331_1305580_+|hypothetical-protein
MKMPDKIFSAASYCTSGGLICTGLARTYDWFHGLDWNFIALASGVIIGVATYLTNLYFKRRWTKMYQQSLDRGYGGPPPQDE

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Click the colored protein region to show detailed information

Crispr_ID: NC_016845_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016845_3

1684820-1684897

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCGCCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016845_3

>merge|NC_016845|3|1684820-1684897|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>NC_016845|3|3|1684820-1684897|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016845.1\|YP_005225929.1\|1689277_1690033_+\|biotin-biosynthesis-protein-BioC	unknown	unknown	gnl\|CDD\|182340
NC_016845.1\|YP_005225924.1\|1682888_1684271_+\|putative-amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NC_016845.1\|YP_005225934.1\|1695494_1696166_-\|DNA-binding-transcriptional-regulator-BasR	unknown	unknown	gnl\|CDD\|182612
NC_016845.1\|YP_005225931.1\|1691498_1691711_-\|hypothetical-protein	unknown	unknown	unknown
NC_016845.1\|YP_005225926.1\|1685596_1686886_-\|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	unknown	unknown	gnl\|CDD\|181189
NC_016845.1\|YP_005225920.1\|1678711_1679437_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NC_016845.1\|YP_005225933.1\|1694392_1695421_-\|sensor-protein-for-basR	unknown	unknown	gnl\|CDD\|236751
NC_016845.1\|YP_005225915.1\|1673320_1674244_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225813
NC_016845.1\|YP_005225923.1\|1681263_1682790_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NC_016845.1\|YP_005225922.1\|1680328_1681267_+\|putative-urocanase	unknown	unknown	gnl\|CDD\|235448
NC_016845.1\|YP_005225925.1\|1685049_1685526_-\|putative-kinase-inhibitor-protein	unknown	unknown	gnl\|CDD\|182339
NC_016845.1\|YP_005225919.1\|1677693_1678650_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NC_016845.1\|YP_005225928.1\|1688136_1689294_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NC_016845.1\|YP_005225918.1\|1676377_1677697_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NC_016845.1\|YP_005225932.1\|1692122_1694144_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NC_016845.1\|YP_005225921.1\|1679579_1680332_+\|putative-urocanase	unknown	unknown	gnl\|CDD\|235448
NC_016845.1\|YP_005225930.1\|1690025_1690748_+\|dithiobiotin-synthetase	unknown	unknown	gnl\|CDD\|234625
NC_016845.1\|YP_005225927.1\|1687123_1688140_+\|biotin-synthesis,-sulfur-insertion	unknown	unknown	gnl\|CDD\|185063
NC_016845.1\|YP_005225917.1\|1674939_1676223_-\|putative-pectinesterase	unknown	unknown	gnl\|CDD\|236709
NC_016845.1\|YP_005225916.1\|1674258_1674666_+\|putative-cation-transport-protein	unknown	unknown	gnl\|CDD\|319775

Protein	Function_ID	Function_description	E-value
NC_016845.1\|YP_005225929.1\|1689277_1690033_+\|biotin-biosynthesis-protein-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.7976e-160
NC_016845.1\|YP_005225924.1\|1682888_1684271_+\|putative-amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NC_016845.1\|YP_005225934.1\|1695494_1696166_-\|DNA-binding-transcriptional-regulator-BasR	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	2.78247e-146
NC_016845.1\|YP_005225926.1\|1685596_1686886_-\|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NC_016845.1\|YP_005225920.1\|1678711_1679437_+\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NC_016845.1\|YP_005225933.1\|1694392_1695421_-\|sensor-protein-for-basR	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NC_016845.1\|YP_005225915.1\|1673320_1674244_-\|hypothetical-protein	gnl\|CDD\|225813	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only].	6.63632e-09
NC_016845.1\|YP_005225923.1\|1681263_1682790_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NC_016845.1\|YP_005225922.1\|1680328_1681267_+\|putative-urocanase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NC_016845.1\|YP_005225925.1\|1685049_1685526_-\|putative-kinase-inhibitor-protein	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NC_016845.1\|YP_005225919.1\|1677693_1678650_+\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	8.10638e-178
NC_016845.1\|YP_005225928.1\|1688136_1689294_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
NC_016845.1\|YP_005225918.1\|1676377_1677697_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NC_016845.1\|YP_005225932.1\|1692122_1694144_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_016845.1\|YP_005225921.1\|1679579_1680332_+\|putative-urocanase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	1.89533e-177
NC_016845.1\|YP_005225930.1\|1690025_1690748_+\|dithiobiotin-synthetase	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NC_016845.1\|YP_005225927.1\|1687123_1688140_+\|biotin-synthesis,-sulfur-insertion	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NC_016845.1\|YP_005225917.1\|1674939_1676223_-\|putative-pectinesterase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NC_016845.1\|YP_005225916.1\|1674258_1674666_+\|putative-cation-transport-protein	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	2.27037e-48

>NC_016845.1|YP_005225924.1|1682888_1684271_+|putative-amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NC_016845.1|YP_005225923.1|1681263_1682790_+|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLTRLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGEWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NC_016845.1|YP_005225922.1|1680328_1681267_+|putative-urocanase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NC_016845.1|YP_005225921.1|1679579_1680332_+|putative-urocanase
MSQSKYRQLDVRAPRGTTLTAKSWLTEAPLRMLMNNLDPDVAENPHELVVYGGIGRAARNWECYDAIVKALKNLESDETLLVQSGKPVGVFKTHENSPRVLIANSNLVPHWATWEHFNELDAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYQGSLKGRWVLTAGLGGMGGAQPLAATLAGACSLNIECQQSRIDFRLRTRYVDEQATSLDDALARIKKSPPKGGPSLSRCAATPRRSYRSW
>NC_016845.1|YP_005225920.1|1678711_1679437_+|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NC_016845.1|YP_005225919.1|1677693_1678650_+|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIVRAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEAAHQALREAVADCQRVGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLATLLRIVEPLCRNGKLQAVDLVEFNPLFDIDGQGARAAARLAWQIAHWWR
>NC_016845.1|YP_005225918.1|1676377_1677697_+|imidazolonepropionase
MVFSHKKITFPCAIVDFTGVMKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDADGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NC_016845.1|YP_005225917.1|1674939_1676223_-|putative-pectinesterase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATIGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NC_016845.1|YP_005225916.1|1674258_1674666_+|putative-cation-transport-protein
MDGFAIWRVAFVGSMIAVSAFILEAWLQPRGYSPEFIRTVLLQTLVTAQWFYMLNCRVSDGFSLTKGLLANKGIWIVSGVLLVLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEKPLTRKWRSA
>NC_016845.1|YP_005225915.1|1673320_1674244_-|hypothetical-protein
MTAVTFFTIYNTWDRFDYDYHWILGLLTFISTIATPLFFVVAGYLDAQTRHDANWQIGKIKSVVIVFLFWVTVYYVWEPYQRGYLIQPWFIFALIVIYTFHPLIAWLSQRRGLFFAVLLTLLCCSYGYDLLSVIYPDRHLFSLPPQYRLWTWLLFYLTGQLFNDPKVAEWIRNPQVIKGSIIALPFVYLFTWFYERHFFFALFKADRNAFILTGSQIYILIVLLVIAANAVQFKKNREWKEAVLATVSKAMTGVYILHYSVFHLLVMLIPVHSLATKLGVIALTFVLSVLISLAALSSTLLRKVITL
>NC_016845.1|YP_005225925.1|1685049_1685526_-|putative-kinase-inhibitor-protein
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NC_016845.1|YP_005225926.1|1685596_1686886_-|adenosylmethionine-8-amino-7-oxononanoate-aminotransferase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVAGESLRLLESGEWQPQVTAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMAALQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NC_016845.1|YP_005225927.1|1687123_1688140_+|biotin-synthesis,-sulfur-insertion
MSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NC_016845.1|YP_005225928.1|1688136_1689294_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALVDWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGRQRRDILAARIRQFREGMGKVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHAEDINRLLEVLHGHSE
>NC_016845.1|YP_005225929.1|1689277_1690033_+|biotin-biosynthesis-protein-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NC_016845.1|YP_005225930.1|1690025_1690748_+|dithiobiotin-synthetase
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NC_016845.1|YP_005225931.1|1691498_1691711_-|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>NC_016845.1|YP_005225932.1|1692122_1694144_+|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NC_016845.1|YP_005225933.1|1694392_1695421_-|sensor-protein-for-basR
MVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTSISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENEAVVSGDATLIGVILRNLVENAHRYSPEGSTIRVSVKAGLMPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH
>NC_016845.1|YP_005225934.1|1695494_1696166_-|DNA-binding-transcriptional-regulator-BasR
MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVLDLGLPDEDGLHFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHNNQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIYSWDNEPATNTLEVHIHNLREKIGKSRIRTVRGFGYMLANNIDTE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NC_016845_2	2.1\|1296488\|36\|NC_016845\|CRISPRCasFinder	1296488-1296523	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	1.0
NC_016845_2	2.1\|1296488\|36\|NC_016845\|CRISPRCasFinder	1296488-1296523	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	1.0
NC_016845_2	2.1\|1296488\|36\|NC_016845\|CRISPRCasFinder	1296488-1296523	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	1.0

1. spacer 2.1|1296488|36|NC_016845|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

2. spacer 2.1|1296488|36|NC_016845|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

3. spacer 2.1|1296488|36|NC_016845|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

390471 : 395558

Escherichia_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005224651.1\|390471_391428_+	plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	1.3e-143	78.0
YP_005224652.1\|391437_391809_+	plasmid stable inheritance protein	A0A222YWJ6	Escherichia_phage	2.8e-22	53.7
YP_005224653.1\|391974_392760_-	hypothetical protein	A0A2I6AZV9	Macacine_betaherpesvirus	3.3e-73	67.7
YP_005224654.1\|392816_393338_-	hypothetical protein	A0A1B1P776	Bacillus_phage	1.3e-14	33.5
YP_005224655.1\|393506_393812_-	chaperone-modulator protein CbpM	NA	NA	NA	NA
YP_005224656.1\|393811_394729_-	curved DNA-binding protein	A0A1V0SCV5	Indivirus	2.8e-07	42.2
YP_005224657.1\|394804_394918_+	hypothetical protein	NA	NA	NA	NA
YP_005224658.1\|394874_395558_-	putative transmembrane protein	W8EBD0	Pseudomonas_phage	5.1e-30	42.2

DBSCAN-SWA_2

581951 : 595336

Enterobacteria_phage(66.67%)

integrase,transposase

attL 580390:580404|attR 591988:592002

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
580390:580404	attL	NA	NA	NA	NA
YP_005224840.1\|581951_583214_+\|integrase	putative P4-type integrase	B7SYF8	Stenotrophomonas_phage	8.2e-74	40.7
YP_005224841.1\|583271_584282_-	hypothetical protein	NA	NA	NA	NA
YP_005224842.1\|584692_584806_+	hypothetical protein	NA	NA	NA	NA
YP_005224843.1\|584769_585849_-	hypothetical protein	NA	NA	NA	NA
YP_005224844.1\|586053_587022_+\|transposase	transposase InsC for insertion sequence IS903	A0A1B0VFY5	Salmonella_phage	1.6e-186	100.0
YP_005224845.1\|587434_587584_-	hypothetical protein	NA	NA	NA	NA
YP_005224846.1\|587655_588222_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
YP_005224847.1\|588239_588485_-	phage transcriptional activator, Ogr/delta	Q7M294	Enterobacteria_phage	5.5e-19	56.8
YP_005224848.1\|588481_589219_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
YP_005224849.1\|589779_590046_+	phage DNA binding protein	Q7M299	Enterobacteria_phage	2.0e-30	71.6
YP_005224850.1\|590396_590591_+	phage immunity repressor protein	Q7M2A7	Enterobacteria_phage	7.2e-22	85.5
YP_005224851.1\|590587_590815_+	hypothetical protein	NA	NA	NA	NA
YP_005224852.1\|590811_591132_+	P4 phage protein	NA	NA	NA	NA
YP_005224853.1\|591146_593480_+	nucleoside triphosphatase, D5 family	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
591988:592002	attR	NA	NA	NA	NA
YP_005224854.1\|594224_594491_+\|transposase	IS3 family element, transposase orfA	NA	NA	NA	NA
YP_005224855.1\|594568_594724_-	hypothetical protein	NA	NA	NA	NA
YP_005224856.1\|594856_595336_+\|transposase	IS3 family element, transposase orfB	A0A0N9SIX5	Staphylococcus_phage	1.6e-06	29.7

DBSCAN-SWA_3

1064222 : 1075879

Enterobacteria_phage(70.0%)

integrase

attL 1052356:1052370|attR 1075416:1075430

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1052356:1052370	attL	NA	NA	NA	NA
YP_005225302.1\|1064222_1066556_-	bacteriophage P4 DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.4
YP_005225303.1\|1066570_1066891_-	P4 phage protein	NA	NA	NA	NA
YP_005225304.1\|1066887_1067067_-	hypothetical protein	NA	NA	NA	NA
YP_005225305.1\|1067111_1067306_-	phage immunity repressor protein	Q7M2A7	Enterobacteria_phage	3.2e-22	85.5
YP_005225306.1\|1067665_1067932_-	hypothetical protein	Q7M299	Enterobacteria_phage	2.6e-30	71.6
YP_005225307.1\|1068036_1068174_+	hypothetical protein	NA	NA	NA	NA
YP_005225308.1\|1068473_1069211_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-73	60.7
YP_005225309.1\|1069207_1069453_+	phage transcriptional activator, Ogr/delta	Q7M294	Enterobacteria_phage	1.9e-19	58.0
YP_005225310.1\|1069470_1070037_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-59	64.3
YP_005225311.1\|1070605_1071031_-	hypothetical protein	NA	NA	NA	NA
YP_005225312.1\|1071030_1071981_-	cobyrinic acid a,c-diamide synthase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
YP_005225313.1\|1071968_1073159_-\|integrase	putative site specific integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
YP_005225314.1\|1073511_1074765_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
YP_005225315.1\|1074775_1075879_-	gamma-glutamyl kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
1075416:1075430	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1285434 : 1325764

Salmonella_phage(17.95%)

integrase,head,tRNA,transposase

attL 1288314:1288360|attR 1338717:1338763

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005225531.1\|1285434_1286820_+\|tRNA	cysteinyl-tRNA synthetase	M1PG92	Moumouvirus	3.5e-46	35.4
YP_005225532.1\|1286862_1287075_-	hypothetical protein	NA	NA	NA	NA
YP_005225533.1\|1287076_1287943_-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
1288314:1288360	attL	NA	NA	NA	NA
YP_005225534.1\|1288373_1289537_-\|integrase	site-specific recombinase, phage integrase family	G8C7S0	Escherichia_phage	3.3e-202	87.3
YP_005225535.1\|1289750_1289966_-	phage/conjugal plasmid C-4 type zinc finger protein, TraR family	A0A0K2FI84	Escherichia_phage	4.0e-13	52.9
YP_005225536.1\|1290182_1290953_-	hypothetical protein	D5LH17	Escherichia_phage	8.5e-66	52.0
YP_005225537.1\|1290949_1291477_-	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	6.4e-57	61.0
YP_005225538.1\|1291628_1292252_-	putative phage-like protein	S0A2A9	Cellulophaga_phage	1.3e-45	48.1
YP_005225539.1\|1292248_1292584_-	hypothetical protein	A0A0F7L7F5	uncultured_marine_virus	1.3e-10	34.3
YP_005225540.1\|1292553_1292751_-	hypothetical protein	NA	NA	NA	NA
YP_005225541.1\|1292762_1293047_-	hypothetical protein	G8C7T1	Escherichia_phage	1.5e-28	61.7
YP_005225542.1\|1293326_1293452_-	hypothetical protein	NA	NA	NA	NA
YP_005225543.1\|1293850_1293973_-	hypothetical protein	NA	NA	NA	NA
YP_005225544.1\|1294559_1294928_-	regulatory protein CI bacteriophage origin	Q76H56	Enterobacteria_phage	1.1e-60	91.0
YP_005225545.1\|1295350_1295578_+	hypothetical protein	A0A2I6PIE5	Escherichia_phage	1.9e-18	61.2
YP_005225546.1\|1295617_1295839_+	bacteriophage CII family protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
YP_005225547.1\|1295924_1296071_+	hypothetical protein	NA	NA	NA	NA
YP_005225548.1\|1296111_1296963_+	hypothetical protein	F1C5C3	Cronobacter_phage	5.3e-85	56.3
YP_005225549.1\|1296967_1298383_+	replicative DNA helicase	Q9MCT4	Escherichia_phage	1.8e-183	67.1
YP_005225550.1\|1298382_1298676_+	hypothetical protein	O48423	Enterobacteria_phage	3.3e-26	65.6
YP_005225551.1\|1298672_1299179_+	hypothetical protein	A0A0A6Z565	Enterobacter_phage	3.0e-27	59.6
YP_005225552.1\|1299292_1299424_+	hypothetical protein	NA	NA	NA	NA
YP_005225553.1\|1299416_1300091_+	RelE family toxin-antitoxin system	C6ZR30	Salmonella_phage	7.8e-07	63.0
YP_005225554.1\|1300605_1301559_+	Eaa1	S4TSR6	Salmonella_phage	2.5e-51	42.8
YP_005225555.1\|1302059_1302515_+	hypothetical protein	K7P7B8	Enterobacteria_phage	8.0e-56	69.5
YP_005225556.1\|1302677_1303316_+	putative ninG protein	H6WRY9	Salmonella_phage	1.4e-74	69.3
YP_005225557.1\|1303488_1303611_+	hypothetical protein	NA	NA	NA	NA
YP_005225558.1\|1305331_1305580_+	hypothetical protein	NA	NA	NA	NA
YP_005225559.1\|1305582_1306113_+	hypothetical protein	A0A1I9LJR4	Stx_converting_phage	9.3e-80	79.7
YP_005225560.1\|1306109_1306499_+	hypothetical protein	U5P0U9	Shigella_phage	1.1e-21	47.9
YP_005225561.1\|1306713_1306836_+	hypothetical protein	NA	NA	NA	NA
YP_005225562.1\|1306957_1307593_+	hypothetical protein	I6S676	Salmonella_phage	9.4e-103	81.6
YP_005225563.1\|1307731_1308109_+	hypothetical protein	H9C190	Pectobacterium_phage	1.4e-53	84.0
YP_005225564.1\|1308110_1309787_+	hypothetical protein	H9C191	Pectobacterium_phage	2.3e-249	74.4
YP_005225565.1\|1309787_1311308_+	hypothetical protein	A0A2R3UAL5	Myoviridae_environmental_samples	2.2e-105	44.8
YP_005225566.1\|1311360_1312050_+\|head	putative phage head morphogenesis protein	H9C0V1	Aeromonas_phage	6.7e-62	52.2
YP_005225567.1\|1312171_1312327_+	hypothetical protein	NA	NA	NA	NA
YP_005225568.1\|1312489_1313497_+	hypothetical protein	A0A219YCD3	Aeromonas_phage	1.6e-56	51.2
YP_005225569.1\|1313573_1313696_-	hypothetical protein	NA	NA	NA	NA
YP_005225570.1\|1313676_1314939_-\|transposase	transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
YP_005225571.1\|1315170_1316139_-\|transposase	transposase InsC for insertion sequence IS903	A0A1B0VFY5	Salmonella_phage	1.6e-186	100.0
YP_005225572.1\|1316335_1316659_+	hypothetical protein	A0A2R3UAL3	Myoviridae_environmental_samples	7.8e-05	37.5
YP_005225573.1\|1316660_1317143_+	hypothetical protein	A0A219YBF2	Aeromonas_phage	1.2e-33	51.0
YP_005225574.1\|1317142_1318180_+	hypothetical protein	A0A219YBB0	Aeromonas_phage	1.1e-84	50.3
YP_005225575.1\|1318181_1318508_+	hypothetical protein	H9C0V9	Aeromonas_phage	2.1e-10	42.5
YP_005225576.1\|1318953_1319517_+	hypothetical protein	H9C0W2	Aeromonas_phage	2.4e-17	32.4
YP_005225577.1\|1319648_1319882_+	hypothetical protein	NA	NA	NA	NA
YP_005225578.1\|1319863_1320415_+	hypothetical protein	NA	NA	NA	NA
YP_005225579.1\|1320418_1321900_+	hypothetical protein	Q2NPD0	Xanthomonas_phage	9.3e-61	35.0
YP_005225580.1\|1321899_1322343_+	hypothetical protein	NA	NA	NA	NA
YP_005225581.1\|1322523_1323081_+	hypothetical protein	A0A088CBJ5	Shigella_phage	1.2e-88	89.3
YP_005225582.1\|1323160_1323637_+	hypothetical protein	A0A068CGG2	Acinetobacter_phage	5.5e-07	29.8
YP_005225583.1\|1323714_1323858_+	hypothetical protein	NA	NA	NA	NA
YP_005225584.1\|1323838_1325764_+	transglycosylase	A0A0M4REK7	Salmonella_phage	1.7e-38	53.2
1338717:1338763	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1778389 : 1808525

Salmonella_phage(84.38%)

integrase,tail,portal,terminase,plate,capsid

attL 1778297:1778315|attR 1808597:1808615

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1778297:1778315	attL	NA	NA	NA	NA
YP_005226013.1\|1778389_1779370_-\|integrase	integrase family protein	A0A218M4I3	Erwinia_phage	1.4e-97	57.2
YP_005226014.1\|1779857_1781345_+	putative reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
YP_005226015.1\|1781445_1781634_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
YP_005226016.1\|1781644_1781878_+	putative DinI-like damage-inducible protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
YP_005226017.1\|1782439_1782670_+	hypothetical protein	NA	NA	NA	NA
YP_005226018.1\|1782945_1784688_+	hypothetical protein	NA	NA	NA	NA
YP_005226019.1\|1784749_1785775_-\|portal	putative phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
YP_005226020.1\|1785774_1787541_-\|terminase	terminase, ATPase subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
YP_005226021.1\|1787683_1788517_+\|capsid	Presumed capsid scaffolding protein (GpO)	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
YP_005226022.1\|1788533_1789592_+\|capsid	minor capsid protein H1 and H2, major capsid protein N*	E5G6M6	Salmonella_phage	1.1e-180	93.1
YP_005226023.1\|1789595_1790246_+\|terminase	terminase, endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
YP_005226024.1\|1790341_1790806_+	Head completion/stabilization protein (GpL)	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
YP_005226025.1\|1790805_1791009_+	hypothetical protein	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
YP_005226026.1\|1791012_1791228_+	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
YP_005226027.1\|1791208_1791718_+	hypothetical protein	E5G6N1	Salmonella_phage	2.1e-81	83.4
YP_005226028.1\|1791722_1792106_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
YP_005226029.1\|1792102_1792531_+	hypothetical protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
YP_005226030.1\|1792517_1792664_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	6.0e-13	76.1
YP_005226031.1\|1792626_1793058_+\|tail	P2 phage tail completion protein R	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
YP_005226032.1\|1793092_1793497_+	phage virion morphogenesis protein	E5G6N4	Salmonella_phage	4.3e-45	72.0
YP_005226033.1\|1793493_1794003_-	hypothetical protein	NA	NA	NA	NA
YP_005226034.1\|1794001_1794166_+	hypothetical protein	NA	NA	NA	NA
YP_005226035.1\|1794280_1794853_+\|plate	baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
YP_005226036.1\|1794849_1795212_+\|plate	baseplate assembly protein W	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
YP_005226037.1\|1795198_1796107_+\|plate	baseplate assembly protein J	E5G6N8	Salmonella_phage	7.6e-106	66.9
YP_005226038.1\|1796099_1796699_+\|tail	tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
YP_005226039.1\|1796700_1799652_+	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
YP_005226040.1\|1799655_1800387_+	hypothetical protein	NA	NA	NA	NA
YP_005226041.1\|1800425_1800587_+	hypothetical protein	NA	NA	NA	NA
YP_005226042.1\|1800616_1801693_+	hypothetical protein	Q37842	Escherichia_phage	1.2e-25	44.8
YP_005226043.1\|1801831_1803004_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
YP_005226044.1\|1803013_1803529_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
YP_005226045.1\|1803581_1803881_+\|tail	phage tail protein E	E5G6P9	Salmonella_phage	3.7e-33	79.0
YP_005226046.1\|1803895_1804015_+	hypothetical protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
YP_005226047.1\|1804007_1804130_+	hypothetical protein	NA	NA	NA	NA
YP_005226048.1\|1804242_1806636_+\|tail	phage tail tape measure protein, family	E5FFG5	Burkholderia_phage	1.1e-106	44.0
YP_005226049.1\|1806632_1807118_+\|tail	putative bacteriophage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
YP_005226050.1\|1807114_1808215_+	Late control gene D protein (GpD)	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
YP_005226051.1\|1808369_1808525_+	prophage P2 Ogr protein	E5G6Q4	Salmonella_phage	2.9e-10	65.3
1808597:1808615	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1842941 : 1852405

Dickeya_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005226089.1\|1842941_1844057_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
YP_005226090.1\|1844053_1845994_+	ABC-type macrolide transport system efflux carrier	G9BWD6	Planktothrix_phage	1.9e-37	40.5
YP_005226091.1\|1846070_1846292_-	DNA replication inhibitor	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
YP_005226092.1\|1846617_1846935_+\|protease	ATP-dependent Clp protease adaptor protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
YP_005226093.1\|1846965_1849245_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
YP_005226094.1\|1849365_1849584_-	translation initiation factor IF-1	NA	NA	NA	NA
YP_005226095.1\|1849937_1850657_-	leucyltransferase	NA	NA	NA	NA
YP_005226096.1\|1850683_1852405_-	cytochrome-related transport system ATP-binding component	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_7

2277468 : 2321673

uncultured_Caudovirales_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005226533.1\|2277468_2278230_+	short chain dehydrogenase/reductase family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5
YP_005226534.1\|2278446_2279979_+	putative metal-dependent phosphohydrolase with HD subdomain	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
YP_005226535.1\|2280177_2280666_-\|protease	putative intracellular protease/amidase	NA	NA	NA	NA
YP_005226536.1\|2280922_2282104_+	hypothetical protein	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
YP_005226537.1\|2282286_2282433_-	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
YP_005226538.1\|2282505_2282739_-	hypothetical protein	NA	NA	NA	NA
YP_005226539.1\|2282981_2283095_-	hypothetical protein	A0A286S2B6	Klebsiella_phage	4.6e-13	100.0
YP_005226540.1\|2283190_2283415_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
YP_005226541.1\|2283404_2284115_-	DNA-binding protein Roi	A0A286S260	Klebsiella_phage	2.1e-111	88.3
YP_005226542.1\|2284120_2284639_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
YP_005226543.1\|2284743_2285571_-	gp20	Q8W654	Enterobacteria_phage	5.5e-111	84.0
YP_005226544.1\|2285567_2285762_-	hypothetical protein	NA	NA	NA	NA
YP_005226545.1\|2285758_2286184_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
YP_005226546.1\|2286180_2286303_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.3e-16	100.0
YP_005226547.1\|2286617_2286779_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.5e-20	96.2
YP_005226548.1\|2287152_2287341_-	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
YP_005226549.1\|2287333_2287648_-	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
YP_005226550.1\|2288373_2288541_+	hypothetical protein	NA	NA	NA	NA
YP_005226551.1\|2289428_2291042_+	putative helicase	A0A286N2P9	Klebsiella_phage	2.1e-311	95.9
YP_005226552.1\|2291028_2292006_+	putative phage DNA primase	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
YP_005226553.1\|2292002_2292479_+	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
YP_005226554.1\|2292475_2293258_+	putative antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
YP_005226555.1\|2293324_2293480_+	hypothetical protein	NA	NA	NA	NA
YP_005226556.1\|2293517_2293646_-	hypothetical protein	NA	NA	NA	NA
YP_005226557.1\|2293663_2293867_+	hypothetical protein	NA	NA	NA	NA
YP_005226558.1\|2293877_2295416_-	hypothetical protein	A0A0P0ZEB3	Stx2-converting_phage	5.1e-280	94.3
YP_005226559.1\|2295464_2295812_-	hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
YP_005226560.1\|2295808_2296213_-	hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.3e-69	98.5
YP_005226561.1\|2296376_2296907_+	hypothetical protein	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
YP_005226562.1\|2296903_2297293_+	hypothetical protein	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
YP_005226563.1\|2298213_2298702_+	putative bacteriophage protein	NA	NA	NA	NA
YP_005226564.1\|2298652_2300053_+	putative bacteriophage protein	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
YP_005226565.1\|2300290_2301742_+	phage-associated protein, family	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
YP_005226566.1\|2302565_2303600_+	hypothetical protein	A0A0M4R5A6	Salmonella_phage	4.9e-85	53.0
YP_005226567.1\|2303603_2304098_+	Putative bacteriophage protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
YP_005226568.1\|2304109_2305051_+	putative bacteriophage protein	A0A2H4J191	uncultured_Caudovirales_phage	3.9e-137	77.1
YP_005226569.1\|2305090_2305372_+	hypothetical protein	NA	NA	NA	NA
YP_005226570.1\|2305340_2305760_+	putative bacteriophage protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
YP_005226571.1\|2305756_2306263_+	putative bacteriophage protein	NA	NA	NA	NA
YP_005226572.1\|2306262_2306649_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
YP_005226573.1\|2306743_2307184_+	putative bacteriophage protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
YP_005226574.1\|2307187_2308333_+	putative bacteriophage protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
YP_005226575.1\|2308343_2308784_+	Putative bacteriophage protein	A0A0M5M1K6	Salmonella_phage	3.3e-62	80.1
YP_005226576.1\|2308787_2309213_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
YP_005226577.1\|2309248_2309401_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
YP_005226578.1\|2309390_2311394_+	lytic transglycosylase, catalytic	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
YP_005226579.1\|2311579_2311993_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	8.1e-31	55.9
YP_005226580.1\|2312068_2312296_+	putative bacteriophage protein	A0A2H4J495	uncultured_Caudovirales_phage	4.6e-20	56.0
YP_005226581.1\|2312298_2313321_+	putative bacteriophage protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
YP_005226582.1\|2313320_2313662_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
YP_005226583.1\|2313714_2313900_-	hypothetical protein	NA	NA	NA	NA
YP_005226584.1\|2314152_2314503_+	hypothetical protein	NA	NA	NA	NA
YP_005226585.1\|2314556_2315210_+	putative bacteriophage protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
YP_005226586.1\|2315211_2315565_+	putative bacteriophage protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
YP_005226587.1\|2315564_2316761_+	putative bacteriophage protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
YP_005226588.1\|2316862_2317531_+	putative bacteriophage protein	A0A2H4J1A9	uncultured_Caudovirales_phage	1.2e-60	50.9
YP_005226589.1\|2318005_2318170_+	hypothetical protein	NA	NA	NA	NA
YP_005226590.1\|2318290_2318422_+	hypothetical protein	NA	NA	NA	NA
YP_005226591.1\|2318396_2318594_+	hypothetical protein	NA	NA	NA	NA
YP_005226592.1\|2318649_2321673_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.6e-22	44.7

DBSCAN-SWA_8

2545567 : 2556453

Escherichia_phage(77.78%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005226818.1\|2545567_2546188_-	putative aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
YP_005226819.1\|2546180_2547446_-	ygbK domain protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
YP_005226820.1\|2547457_2548360_-	putative dehydrogenase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
YP_005226821.1\|2548620_2549382_+	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
YP_005226822.1\|2549402_2550263_-	beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
YP_005226823.1\|2550560_2550767_+	putative K+ transporting ATPase, KdpC subunit	A0A077SK33	Escherichia_phage	9.6e-25	95.2
YP_005226824.1\|2550908_2551997_+	putative RecF protein	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
YP_005226825.1\|2552027_2553185_-	putative proton/sugar symporter, LacY	NA	NA	NA	NA
YP_005226826.1\|2553157_2553292_-	hypothetical protein	NA	NA	NA	NA
YP_005226827.1\|2553346_2554807_-	beta-D-galactosidase	L0N6M2	Herpes_simplex_virus	1.3e-147	52.0
YP_005226828.1\|2554830_2556453_-	beta-D-galactosidase	L0N6M2	Herpes_simplex_virus	1.7e-180	63.2

DBSCAN-SWA_9

3553139 : 3561516

Escherichia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005227851.1\|3553139_3554144_+	uridine diphosphate galacturonate 4-epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.8e-31	29.5
YP_005227852.1\|3554213_3554354_+	hypothetical protein	NA	NA	NA	NA
YP_005227853.1\|3554544_3554667_+	hypothetical protein	NA	NA	NA	NA
YP_005227854.1\|3555089_3556256_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
YP_005227855.1\|3556435_3556990_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
YP_005227856.1\|3557004_3557895_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
YP_005227857.1\|3557926_3558796_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	5.7e-111	67.0
YP_005227858.1\|3558822_3559887_-	dTDP-D-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-105	55.0
YP_005227859.1\|3560109_3561516_-	6-phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7

DBSCAN-SWA_10

3604843 : 3611749

Bacillus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005227890.1\|3604843_3606322_+	two-component regulatory system sensor protein	W8CYF6	Bacillus_phage	8.5e-30	28.3
YP_005227891.1\|3606318_3607041_+	two-component regulatory system response regulator	W8CYM9	Bacillus_phage	8.3e-31	33.2
YP_005227892.1\|3607359_3608721_+\|protease	putative protease	Q6DW11	Phage_TP	1.8e-207	94.8
YP_005227893.1\|3608964_3609861_+	lipid kinase	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
YP_005227894.1\|3610101_3610875_-	peptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
YP_005227895.1\|3610885_3611749_-	putative dipeptide ABC transport system ATP-binding component	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_11

4049986 : 4091803

Escherichia_phage(34.15%)

transposase,tRNA,tail,portal,terminase,head,holin,plate,lysis,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005228300.1\|4049986_4051018_-	gp27	A0A0M4S6G4	Salmonella_phage	1.6e-173	83.7
YP_005228301.1\|4051020_4051617_-	CI repressor	Q6K1G0	Salmonella_virus	8.1e-48	47.7
YP_005228302.1\|4052114_4052246_+	hypothetical protein	NA	NA	NA	NA
YP_005228303.1\|4052277_4052787_+	gp31	Q6K1F8	Salmonella_virus	4.1e-85	94.1
YP_005228304.1\|4052848_4052995_+	hypothetical protein	E5G6L4	Salmonella_phage	8.9e-09	75.8
YP_005228305.1\|4053075_4053363_+	hypothetical protein	F1BUS4	Erwinia_phage	2.3e-24	55.9
YP_005228306.1\|4053428_4053653_+	hypothetical protein	A0A0M3UL87	Salmonella_phage	4.4e-15	71.9
YP_005228307.1\|4053652_4053880_+	hypothetical protein	A0A0M4S5Q7	Salmonella_phage	1.8e-24	76.4
YP_005228308.1\|4053876_4054458_+	putative exonuclease CP81	A0A1S6L012	Salmonella_phage	2.6e-83	77.7
YP_005228309.1\|4054454_4054727_+	hypothetical protein	A0A218M4I8	Erwinia_phage	1.1e-31	73.3
YP_005228310.1\|4055148_4057212_+	gp36	A0A218M4H2	Erwinia_phage	0.0e+00	89.9
YP_005228311.1\|4057357_4058845_-	putative reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
YP_005228312.1\|4059248_4059431_+	TumA	A0A0M5M1G5	Salmonella_phage	5.3e-19	78.3
YP_005228313.1\|4059551_4059665_+	bacteriophage sos operon Tum protein	A0A218M4I0	Erwinia_phage	2.8e-10	78.4
YP_005228314.1\|4059744_4060476_+	phage protein	Q37850	Escherichia_phage	2.4e-118	85.6
YP_005228315.1\|4060589_4061387_+	hypothetical protein	NA	NA	NA	NA
YP_005228316.1\|4061757_4062801_-\|portal	putative prophage presumed portal protein	M1SV64	Escherichia_phage	2.6e-166	82.1
YP_005228317.1\|4062800_4064570_-\|terminase	putative prophage large terminase protein	A0A0F7LCK3	Escherichia_phage	2.4e-305	87.8
YP_005228318.1\|4064735_4065590_+\|capsid	putative prophage capsid scaffolding protein	Q94MB7	Escherichia_virus	4.8e-126	81.0
YP_005228319.1\|4065663_4066527_+\|capsid	putative prophage major capsid protein	S4TUA6	Salmonella_phage	1.5e-111	83.7
YP_005228320.1\|4066520_4066721_+\|capsid	putative prophage major capsid protein	O80304	Escherichia_phage	1.5e-22	81.8
YP_005228321.1\|4066748_4067468_+\|terminase	putative prophage small terminase subunit	Q94MJ2	Enterobacteria_phage	2.1e-95	79.7
YP_005228322.1\|4067564_4068071_+\|head	putative prophage phage head completion protein	U5N0S3	Enterobacteria_phage	5.4e-61	84.3
YP_005228323.1\|4068070_4068274_+\|tail	putative prophage tail component protein	A0A0F7LCN2	Escherichia_phage	3.6e-24	79.1
YP_005228324.1\|4068278_4068569_+\|holin	putative prophage holin	O80308	Escherichia_phage	5.3e-37	85.7
YP_005228325.1\|4068555_4069053_+\|lysis	putative prophage endolysin, control of lysis	A0A0F7LBS0	Escherichia_phage	3.0e-80	87.7
YP_005228326.1\|4069049_4069481_+	putative prophage P2 LysB-like protein	O80310	Escherichia_phage	3.7e-42	66.9
YP_005228327.1\|4069455_4069614_+	hypothetical protein	A0A218M4L1	Erwinia_phage	3.8e-13	74.0
YP_005228328.1\|4069576_4070044_+\|tail	putative prophage, tail completion protein	A0A0F7LA33	Escherichia_phage	6.3e-64	74.8
YP_005228329.1\|4070111_4070486_+\|tail	putative prophage, tail completion protein	O80313	Escherichia_phage	2.1e-41	71.3
YP_005228330.1\|4070602_4071196_+\|plate	putative prophage baseplate assembly protein	A0A0M4S6F6	Salmonella_phage	8.2e-85	76.6
YP_005228331.1\|4071192_4071540_+\|plate	putative prophage baseplate protein	Q7Y4D7	Escherichia_virus	4.9e-45	77.4
YP_005228332.1\|4071544_4072453_+\|plate	putative prophage baseplate assembly protein	F1BUP3	Erwinia_phage	1.9e-112	70.5
YP_005228333.1\|4072460_4073045_+\|tail	tail protein I	A0A1S6L000	Salmonella_phage	1.5e-51	57.2
YP_005228334.1\|4073049_4073850_+	hypothetical protein	NA	NA	NA	NA
YP_005228335.1\|4073839_4077277_+	hypothetical protein	NA	NA	NA	NA
YP_005228336.1\|4077292_4078363_+	hypothetical protein	A0A0M3ULH6	Salmonella_phage	8.9e-29	40.8
YP_005228337.1\|4078473_4079655_+\|tail	putative prophage tail sheath	A0A0F7LBW9	Escherichia_phage	2.1e-196	86.9
YP_005228338.1\|4079668_4080184_+\|tail	putative prophage tail tube protein	A0A0F7LDZ1	Escherichia_phage	3.2e-69	75.6
YP_005228339.1\|4080244_4080520_+\|tail	putative prophage tail protein	A0A0F7LDQ8	Escherichia_phage	2.4e-31	77.3
YP_005228340.1\|4080552_4080672_+\|tail	putative prophage tail protein	A0A0F7LCR6	Escherichia_phage	2.0e-14	92.3
YP_005228341.1\|4080664_4083106_+\|tail	putative prophage tail length determinator	Q858U7	Yersinia_virus	1.1e-289	72.1
YP_005228342.1\|4083272_4083599_+\|tail	putative prophage tail protein	U5N3F6	Enterobacteria_phage	8.6e-44	81.1
YP_005228343.1\|4083598_4084759_+\|tail	putative prophage tail protein	Q7Y4C6	Escherichia_virus	9.8e-175	81.2
YP_005228344.1\|4085217_4085565_-	50S ribosomal protein L19	NA	NA	NA	NA
YP_005228345.1\|4085604_4086372_-\|tRNA	tRNA (guanine-N(1)-)-methyltransferase	NA	NA	NA	NA
YP_005228346.1\|4086403_4086862_-	16S rRNA-processing protein	NA	NA	NA	NA
YP_005228347.1\|4086970_4087219_-	30S ribosomal protein S16	NA	NA	NA	NA
YP_005228348.1\|4087478_4088843_-	fifty-four-like protein	NA	NA	NA	NA
YP_005228349.1\|4089006_4089798_+	hypothetical protein	NA	NA	NA	NA
YP_005228350.1\|4089817_4090444_+	hypothetical protein	NA	NA	NA	NA
YP_005228351.1\|4090540_4091803_+\|transposase	transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0

DBSCAN-SWA_12

4783391 : 4852767

uncultured_Caudovirales_phage(57.89%)

integrase,tRNA,tail,terminase,portal,holin,head,protease,capsid

attL 4819150:4819167|attR 4835145:4835162

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005229067.1\|4783391_4783886_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.5e-26	54.8
YP_005229068.1\|4783889_4784528_-	stringent starvation protein A	NA	NA	NA	NA
YP_005229069.1\|4784839_4785232_-	30S ribosomal protein S9	NA	NA	NA	NA
YP_005229070.1\|4785247_4785676_-	50S ribosomal protein L13	NA	NA	NA	NA
YP_005229071.1\|4785941_4787069_-	putative ATPase	NA	NA	NA	NA
YP_005229072.1\|4787259_4787658_+	cytochrome d ubiquinol oxidase subunit III	NA	NA	NA	NA
YP_005229073.1\|4787831_4789199_+\|protease	serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	6.0e-22	25.3
YP_005229074.1\|4789286_4790345_+\|protease	serine endoprotease	NA	NA	NA	NA
YP_005229075.1\|4790481_4791420_-	malate dehydrogenase	NA	NA	NA	NA
YP_005229076.1\|4791834_4792305_+	arginine repressor	NA	NA	NA	NA
YP_005229077.1\|4792680_4792944_+	hypothetical protein	NA	NA	NA	NA
YP_005229078.1\|4793192_4793309_+	YcfR family protein	NA	NA	NA	NA
YP_005229079.1\|4793359_4793635_-	hypothetical protein	NA	NA	NA	NA
YP_005229080.1\|4793714_4795622_-	p-hydroxybenzoic acid efflux subunit AaeB	NA	NA	NA	NA
YP_005229081.1\|4795687_4796620_-	putative membrane located multidrug resistance protein	NA	NA	NA	NA
YP_005229082.1\|4796627_4796831_-	hypothetical protein	NA	NA	NA	NA
YP_005229083.1\|4796980_4797892_+	putative LysR-family transcriptional regulator	NA	NA	NA	NA
YP_005229084.1\|4797927_4799373_-\|protease	protease TldD	NA	NA	NA	NA
YP_005229085.1\|4799461_4803259_-	hypothetical protein	NA	NA	NA	NA
YP_005229086.1\|4803296_4804766_-	ribonuclease G	NA	NA	NA	NA
YP_005229087.1\|4804768_4805350_-	Maf-like protein	NA	NA	NA	NA
YP_005229088.1\|4805357_4805846_-	rod shape-determining protein MreD	NA	NA	NA	NA
YP_005229089.1\|4805845_4806838_-	cell wall structural complex MreBCD transmembrane component MreC	NA	NA	NA	NA
YP_005229090.1\|4806908_4807952_-	regulator of ftsI, penicillin binding protein 3, septation function	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
YP_005229091.1\|4808257_4810198_-	hypothetical protein	NA	NA	NA	NA
YP_005229092.1\|4810277_4810469_-	hypothetical protein	NA	NA	NA	NA
YP_005229093.1\|4810697_4811699_+	putative sulfite oxidase subunit YedY	NA	NA	NA	NA
YP_005229094.1\|4811698_4812307_+	hypothetical protein	NA	NA	NA	NA
YP_005229095.1\|4812530_4812983_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
YP_005229096.1\|4813005_4813473_+	acetyl-CoA carboxylase	NA	NA	NA	NA
YP_005229097.1\|4813483_4814833_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
YP_005229098.1\|4814943_4815186_+	hypothetical protein	NA	NA	NA	NA
YP_005229099.1\|4815175_4816627_+	sodium/panthothenate symporter	NA	NA	NA	NA
YP_005229100.1\|4816638_4817520_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
YP_005229101.1\|4817970_4818843_+	FMN-linked protein	NA	NA	NA	NA
YP_005229102.1\|4818867_4819164_+	DNA-binding protein Fis	NA	NA	NA	NA
4819150:4819167	attL	NA	NA	NA	NA
YP_005229103.1\|4819317_4819509_-	hypothetical protein	NA	NA	NA	NA
YP_005229104.1\|4819511_4821173_-\|terminase	putative phage terminase, large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
YP_005229105.1\|4821156_4821513_-\|terminase	phage terminase small subunit	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
YP_005229106.1\|4821643_4821796_-	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
YP_005229107.1\|4821788_4822025_-\|holin	putative prophage holin	A0A2H4JAS8	uncultured_Caudovirales_phage	1.8e-35	88.5
YP_005229108.1\|4822231_4822531_-	phage QLRG family, putative DNA packaging	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
YP_005229109.1\|4822527_4822683_-\|head,tail	putative phage head-tail adaptor	A0A1P8DTK6	Proteus_phage	7.2e-09	54.0
YP_005229110.1\|4822859_4824101_-\|portal	phage portal protein, HK97 family	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
YP_005229111.1\|4824102_4824663_-\|head,protease	phage prohead protease, HK97 family	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
YP_005229112.1\|4824714_4825881_-\|capsid	phage major capsid protein, HK97 family	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
YP_005229113.1\|4826144_4826657_+	hypothetical protein	NA	NA	NA	NA
YP_005229114.1\|4826705_4827041_-	hypothetical protein	NA	NA	NA	NA
YP_005229115.1\|4827383_4829519_-	putative prophage protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
YP_005229116.1\|4829518_4829884_-	hypothetical protein	NA	NA	NA	NA
YP_005229117.1\|4829880_4830249_-	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
YP_005229118.1\|4830347_4830476_+	hypothetical protein	NA	NA	NA	NA
YP_005229119.1\|4830552_4830741_-	hypothetical protein	NA	NA	NA	NA
YP_005229120.1\|4830733_4830913_-	hypothetical protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.6e-26	94.9
YP_005229121.1\|4831454_4832234_-	Roi protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
YP_005229122.1\|4832244_4832529_-	phage transcriptional regulator AlpA	NA	NA	NA	NA
YP_005229123.1\|4832710_4833652_-	hypothetical protein	NA	NA	NA	NA
YP_005229124.1\|4833744_4834971_-\|integrase	integrase family protein	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
YP_005229125.1\|4835246_4835897_-	DNA-binding transcriptional regulator EnvR	NA	NA	NA	NA
4835145:4835162	attR	NA	NA	NA	NA
YP_005229126.1\|4836274_4837414_+	transmembrane protein	NA	NA	NA	NA
YP_005229127.1\|4837426_4840537_+	inner membrane multidrug efflux protein BpeB	NA	NA	NA	NA
YP_005229128.1\|4840830_4841052_+	hypothetical protein	NA	NA	NA	NA
YP_005229129.1\|4846750_4847401_+	transferase	NA	NA	NA	NA
YP_005229130.1\|4847376_4847634_-	hypothetical protein	NA	NA	NA	NA
YP_005229131.1\|4847630_4848449_-	shikimate 5-dehydrogenase	NA	NA	NA	NA
YP_005229132.1\|4848452_4849025_-	putative RNA-binding protein with unique protein fold	NA	NA	NA	NA
YP_005229133.1\|4849029_4849572_-	putative DNA topoisomerase	NA	NA	NA	NA
YP_005229134.1\|4849597_4850071_-	hypothetical protein	NA	NA	NA	NA
YP_005229135.1\|4850042_4851167_-	putative competence protein	NA	NA	NA	NA
YP_005229136.1\|4851295_4851805_+	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
YP_005229137.1\|4851819_4852767_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_016846

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9591 : 31119

Salmonella_phage(38.46%)

integrase,transposase

attL 15553:15566|attR 21626:21639

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005229634.1\|9591_9819_+\|transposase	putative transposase	A0A2L1IV22	Escherichia_phage	1.7e-35	94.6
YP_005229635.1\|9863_10241_+\|transposase	putative transposase	Q71TF0	Escherichia_phage	1.9e-63	93.6
YP_005229636.1\|10242_10623_+\|transposase	IS903D transposase	A0A1B0VFY5	Salmonella_phage	6.3e-46	97.8
YP_005229637.1\|10821_11826_-\|transposase	transposase InsD1 for insertion sequence IS4321R	NA	NA	NA	NA
YP_005229638.1\|11904_12339_-	putative transcriptional regulator MerR	NA	NA	NA	NA
YP_005229639.1\|12410_12761_+	putative mercuric transport protein	NA	NA	NA	NA
YP_005229640.1\|12774_13050_+	hypothetical protein	NA	NA	NA	NA
YP_005229641.1\|13046_13508_+	putative mercury transport protein MerC	NA	NA	NA	NA
YP_005229642.1\|13741_13867_-	hypothetical protein	NA	NA	NA	NA
YP_005229643.1\|13886_15254_+	mercuric ion reductase	A0A2K5B2C5	Erysipelothrix_phage	4.6e-38	27.6
YP_005229644.1\|15271_15634_+	HTH-type transcriptional regulator merD	NA	NA	NA	NA
15553:15566	attL	NA	NA	NA	NA
YP_005229645.1\|15630_15867_+	putative mercury resistance protein	NA	NA	NA	NA
YP_005229646.1\|15902_16571_+	hypothetical protein	NA	NA	NA	NA
YP_005229647.1\|16645_17914_+\|integrase	integrase core subunit	NA	NA	NA	NA
YP_005229648.1\|17942_18665_+	hypothetical protein	A0A077SL39	Escherichia_phage	3.2e-139	100.0
YP_005229649.1\|18704_19178_+	resolvase	Q1MVP4	Enterobacteria_phage	3.3e-76	99.3
YP_005229650.1\|19300_20281_+\|transposase	putative transposase	A8RHK4	Spiroplasma_virus	2.9e-10	27.4
YP_005229651.1\|20393_20540_-	hypothetical protein	NA	NA	NA	NA
YP_005229652.1\|20556_21438_+	Class A Carbapenemase Kpc-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
YP_005229653.1\|21687_22668_-\|transposase	putative transposase	NA	NA	NA	NA
21626:21639	attR	NA	NA	NA	NA
YP_005229654.1\|22672_22969_-	transcriptional repressor protein KorC	NA	NA	NA	NA
YP_005229655.1\|23014_23170_-	hypothetical protein	NA	NA	NA	NA
YP_005229656.1\|23297_23723_-	antirestriction protein Klca	A0A2D0W8Z5	Bordetella_virus	5.3e-17	37.3
YP_005229657.1\|23833_24112_-	hypothetical protein	NA	NA	NA	NA
YP_005229658.1\|24095_24491_-	hypothetical protein	NA	NA	NA	NA
YP_005229659.1\|24645_25206_-	putative replication protein	NA	NA	NA	NA
YP_005229660.1\|25498_25666_-	hypothetical protein	A0A1B0V7I9	Salmonella_phage	2.3e-24	98.2
YP_005229661.1\|25654_26215_+	Tn4653 resolvase	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
YP_005229662.1\|26218_29185_+\|transposase	transposase for transposon Tn1721	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
YP_005229663.1\|29326_29521_+\|transposase	transposase IS26	A0A077SL39	Escherichia_phage	6.0e-29	98.4
YP_005229664.1\|29722_30196_-	hypothetical protein	NA	NA	NA	NA
YP_005229665.1\|30285_30549_-	hypothetical protein	NA	NA	NA	NA
YP_005229666.1\|30615_31119_-\|transposase	putative transposase	NA	NA	NA	NA

DBSCAN-SWA_2

39767 : 46674

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005229677.1\|39767_40247_-	endonuclease	A0A1B2LRT6	Wolbachia_phage	2.7e-17	31.7
YP_005229678.1\|40481_41204_-	hypothetical protein	A0A077SL39	Escherichia_phage	3.2e-139	100.0
YP_005229679.1\|41210_41540_+	hypothetical protein	Q1MVP4	Enterobacteria_phage	4.6e-45	100.0
YP_005229680.1\|41722_42583_+	beta-lactamase	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
YP_005229681.1\|42815_43124_-	hypothetical protein	K7PKY8	Enterobacterial_phage	1.1e-08	31.7
YP_005229682.1\|43120_43771_-	hypothetical protein	NA	NA	NA	NA
YP_005229683.1\|43826_44471_-	hypothetical protein	NA	NA	NA	NA
YP_005229684.1\|44520_45123_-	hypothetical protein	NA	NA	NA	NA
YP_005229685.1\|45283_45877_-	fertility inhibition protein	NA	NA	NA	NA
YP_005229686.1\|45948_46674_-	type-F conjugative transfer system pilin acetylase TraX	A0A1D6ZIU7	Xanthomonas_phage	5.5e-06	27.6

DBSCAN-SWA_3

100180 : 111195

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005229764.1\|100180_100882_-	putative methylase	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2
YP_005229765.1\|101083_101200_-	hypothetical protein	NA	NA	NA	NA
YP_005229766.1\|101318_101549_-	hypothetical protein	NA	NA	NA	NA
YP_005229767.1\|101611_102283_-	mediator of plasmid stability	NA	NA	NA	NA
YP_005229768.1\|102285_103257_-	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
YP_005229769.1\|103387_103513_-	hypothetical protein	NA	NA	NA	NA
YP_005229770.1\|103505_104990_-	putative retA reverse transcriptase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
YP_005229771.1\|105305_105422_-	hypothetical protein	NA	NA	NA	NA
YP_005229772.1\|105399_105831_+	Protein impA	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
YP_005229773.1\|105830_107102_+	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	7.5e-152	63.7
YP_005229774.1\|107183_108158_-	plasmid partition protein B	Q38420	Escherichia_phage	1.4e-86	53.8
YP_005229775.1\|108157_109363_-	plasmid partition protein A	A0A077SL49	Escherichia_phage	5.3e-163	69.3
YP_005229776.1\|110472_111195_-	DNA replication	A0A222YYK1	Escherichia_phage	1.3e-23	31.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_016838

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

200 : 90662

104

Salmonella_phage(88.37%)

integrase,transposase,tail

attL 2600:2619|attR 43847:43866

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005220808.1\|200_1418_+	replication protein A	J9Q7H0	Salmonella_phage	1.3e-73	47.3
YP_005220809.1\|1869_2082_-	hypothetical protein	J9Q7S8	Salmonella_phage	4.3e-28	80.0
YP_005220810.1\|2081_2696_-	hypothetical protein	J9Q7Z5	Salmonella_phage	2.3e-37	67.6
2600:2619	attL	NA	NA	NA	NA
YP_005220811.1\|2779_2956_-	hypothetical protein	J9Q7G9	Salmonella_phage	4.7e-12	68.8
YP_005220812.1\|3126_4149_-	putative recombinase	J9Q736	Salmonella_phage	2.4e-185	96.1
YP_005220813.1\|4114_4474_-	hypothetical protein	J9Q7G8	Salmonella_phage	3.4e-33	83.7
YP_005220814.1\|4473_5418_-	hypothetical protein	J9Q7S6	Salmonella_phage	1.1e-171	93.0
YP_005220815.1\|5478_6486_-	putative regulator	J9Q7Z3	Salmonella_phage	1.6e-144	88.3
YP_005220816.1\|6605_7037_-	hypothetical protein	J9Q6I8	Salmonella_phage	1.4e-65	91.6
YP_005220817.1\|7201_7501_-	lipoprotein	NA	NA	NA	NA
YP_005220818.1\|7637_7892_-	hypothetical protein	A0A291AWZ9	Escherichia_phage	5.9e-24	64.6
YP_005220819.1\|8132_8558_-	hypothetical protein	J9Q7S4	Salmonella_phage	8.6e-60	83.7
YP_005220820.1\|8572_9067_-	DNA polymerase III	J9Q7Z2	Salmonella_phage	3.9e-88	95.7
YP_005220821.1\|9045_12090_-	putative DNA polymerase III alpha subunit	J9Q7Z2	Salmonella_phage	0.0e+00	92.6
YP_005220822.1\|12270_13116_-	porphyrin biosynthetic protein	J9Q733	Salmonella_phage	1.1e-151	91.5
YP_005220823.1\|13157_13466_-	putative porphyrin biosynthetic protein	J9Q733	Salmonella_phage	2.4e-27	69.4
YP_005220824.1\|13599_15885_-	porphyrin biosynthetic protein	J9Q7G6	Salmonella_phage	8.0e-245	66.1
YP_005220825.1\|16001_16214_-	hypothetical protein	NA	NA	NA	NA
YP_005220826.1\|16487_16868_+	hypothetical protein	NA	NA	NA	NA
YP_005220827.1\|16862_17966_-\|integrase	integrase	A0A1P8DTG6	Proteus_phage	5.6e-18	30.3
YP_005220828.1\|18052_19537_-	putative retA reverse transcriptase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
YP_005220829.1\|20649_21060_-	putative toxin YafO	NA	NA	NA	NA
YP_005220830.1\|21069_21675_-	hypothetical protein	NA	NA	NA	NA
YP_005220831.1\|21769_22138_-	glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.0e-13	47.4
YP_005220832.1\|22145_22919_-	hypothetical protein	W8D063	Erwinia_phage	1.1e-89	65.0
YP_005220833.1\|23159_24749_+	hypothetical protein	NA	NA	NA	NA
YP_005220834.1\|24948_25104_+	hypothetical protein	NA	NA	NA	NA
YP_005220835.1\|26043_26433_-	hypothetical protein	NA	NA	NA	NA
YP_005220836.1\|26523_29490_-\|transposase	transposase for transposon Tn1721	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
YP_005220837.1\|29493_30054_-	Tn4653 resolvase	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
YP_005220838.1\|30042_30210_+	hypothetical protein	A0A1B0V7I9	Salmonella_phage	2.3e-24	98.2
YP_005220839.1\|30363_30798_+	methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	1.6e-77	100.0
YP_005220840.1\|30839_31763_-\|transposase	transposase InsC for insertion sequence IS903	Q9MCT5	Escherichia_phage	2.2e-177	99.7
YP_005220841.1\|31842_32694_-	beta-lactamase CTX-M-14	A0A1B0VBP7	Salmonella_phage	7.8e-153	99.6
YP_005220842.1\|32697_32820_+	hypothetical protein	NA	NA	NA	NA
YP_005220843.1\|32864_32987_-	hypothetical protein	NA	NA	NA	NA
YP_005220844.1\|32967_34230_-\|transposase	transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
YP_005220845.1\|34430_35462_+	methyl-accepting chemotaxis protein	A0A1B0VAH3	Salmonella_phage	1.2e-51	100.0
YP_005220846.1\|35772_35988_-	hypothetical protein	J9Q6I3	Salmonella_phage	3.2e-23	77.1
YP_005220847.1\|35971_36136_-	hypothetical protein	J9Q729	Salmonella_phage	6.7e-13	72.5
YP_005220848.1\|36147_37470_-	putative DNA ligase	J9Q7G5	Salmonella_phage	4.8e-226	85.2
YP_005220849.1\|37469_37937_-	hypothetical protein	J9Q7R9	Salmonella_phage	2.0e-49	63.9
YP_005220850.1\|38016_38805_-	hypothetical protein	J9Q7Z0	Salmonella_phage	5.3e-71	50.8
YP_005220851.1\|39066_40269_+	hypothetical protein	NA	NA	NA	NA
YP_005220852.1\|40311_41436_-	hypothetical protein	J9Q720	Salmonella_phage	1.4e-202	91.3
YP_005220853.1\|41583_42924_-	putative DNA helicase	J9Q7G4	Salmonella_phage	7.0e-241	95.7
YP_005220854.1\|42988_43714_-	hypothetical protein	J9Q7R8	Salmonella_phage	1.3e-127	88.4
YP_005220855.1\|43896_44058_-	hypothetical protein	NA	NA	NA	NA
43847:43866	attR	NA	NA	NA	NA
YP_005220856.1\|44299_44734_-	hypothetical protein	J9Q719	Salmonella_phage	3.7e-18	42.9
YP_005220857.1\|44880_45066_-	hypothetical protein	NA	NA	NA	NA
YP_005220858.1\|45138_45495_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.4e-44	97.9
YP_005220859.1\|45500_46166_-	putative plasmid stability protein	J9Q7R7	Salmonella_phage	8.3e-102	83.3
YP_005220860.1\|46405_46927_+	hypothetical protein	NA	NA	NA	NA
YP_005220861.1\|46981_47137_-	hypothetical protein	J9Q7G2	Salmonella_phage	1.3e-13	64.7
YP_005220862.1\|47129_47381_-	hypothetical protein	J9Q7R6	Salmonella_phage	6.4e-23	71.1
YP_005220863.1\|47383_48076_-	putative transmembrane protein	J9Q7Y7	Salmonella_phage	7.0e-120	89.6
YP_005220864.1\|48089_48413_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
YP_005220865.1\|48509_50009_-\|tail	putative phage tail protein	A0A0P0IDN1	Klebsiella_phage	2.1e-108	52.1
YP_005220866.1\|50061_52683_-	Gp21	A0A0P0IKE4	Klebsiella_phage	4.5e-34	52.4
YP_005220867.1\|52642_56548_-	Gp21	Q6UAW1	Klebsiella_phage	4.3e-97	50.1
YP_005220868.1\|56606_62231_-\|tail	putative phage tail protein	J9Q713	Salmonella_phage	0.0e+00	82.4
YP_005220869.1\|62247_62859_-\|tail	putative phage tail protein	J9Q7F8	Salmonella_phage	5.0e-77	72.1
YP_005220870.1\|62846_63644_-\|tail	putative phage tail protein	J9Q7R4	Salmonella_phage	5.4e-140	85.3
YP_005220871.1\|63636_64335_-\|tail	putative phage tail protein	J9Q7Y5	Salmonella_phage	2.6e-122	87.0
YP_005220872.1\|64421_64757_-\|tail	minor tail fiber protein M	J9Q6E1	Salmonella_phage	3.4e-51	84.5
YP_005220873.1\|64800_66138_-\|tail	putative phage tail tape measure protein	J9Q712	Salmonella_phage	3.0e-103	60.1
YP_005220874.1\|66139_69340_-	hypothetical protein	J9Q712	Salmonella_phage	0.0e+00	78.1
YP_005220875.1\|69347_69572_-	hypothetical protein	J9Q7F7	Salmonella_phage	2.0e-31	93.2
YP_005220876.1\|69697_70015_-	hypothetical protein	J9Q7R3	Salmonella_phage	1.8e-46	93.3
YP_005220877.1\|70076_70823_-	hypothetical protein	J9Q7Y4	Salmonella_phage	3.7e-106	83.0
YP_005220878.1\|70890_71283_-	hypothetical protein	J9Q6D8	Salmonella_phage	5.3e-48	69.0
YP_005220879.1\|71284_71758_-	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
YP_005220880.1\|71748_72093_-	hypothetical protein	J9Q7F6	Salmonella_phage	7.4e-54	92.1
YP_005220881.1\|72190_73024_-	hypothetical protein	J9Q7R2	Salmonella_phage	4.1e-130	83.0
YP_005220882.1\|73023_73173_-	hypothetical protein	J9Q7Y3	Salmonella_phage	2.8e-18	93.9
YP_005220883.1\|73340_73529_+	hypothetical protein	NA	NA	NA	NA
YP_005220884.1\|73504_73933_-	hypothetical protein	J9Q6D6	Salmonella_phage	7.9e-29	71.6
YP_005220885.1\|74011_74890_-	hypothetical protein	J9Q710	Salmonella_phage	4.7e-153	94.2
YP_005220886.1\|74916_75816_-	hypothetical protein	J9Q7F4	Salmonella_phage	1.0e-123	82.6
YP_005220887.1\|75838_76486_-	hypothetical protein	J9Q7R1	Salmonella_phage	1.5e-103	88.8
YP_005220888.1\|76599_77427_-	hypothetical protein	J9Q7R1	Salmonella_phage	3.0e-133	85.4
YP_005220889.1\|77444_78701_-	hypothetical protein	J9Q7Y2	Salmonella_phage	9.4e-248	97.4
YP_005220890.1\|78703_79345_-	putative DNA-binding protein	J9Q6D4	Salmonella_phage	6.6e-96	88.2
YP_005220891.1\|79520_79787_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
YP_005220892.1\|79796_80687_-	hypothetical protein	J9Q7I6	Salmonella_phage	5.4e-165	97.0
YP_005220893.1\|80692_80947_-	hypothetical protein	J9Q7U0	Salmonella_phage	1.0e-39	95.2
YP_005220894.1\|80939_81362_-	putative ABC transporter ATP-binding protein	J9Q807	Salmonella_phage	1.2e-69	98.6
YP_005220895.1\|81358_81577_-	putative ABC transporter ATP-binding protein	J9Q807	Salmonella_phage	1.6e-25	95.1
YP_005220896.1\|81573_82242_-	hypothetical protein	J9Q6L1	Salmonella_phage	1.9e-106	91.4
YP_005220897.1\|82241_82946_-	hypothetical protein	J9Q756	Salmonella_phage	3.7e-108	88.8
YP_005220898.1\|83005_84565_+	putative helicase	J9Q7I4	Salmonella_phage	1.5e-279	92.7
YP_005220899.1\|84567_84843_+	hypothetical protein	J9Q7T9	Salmonella_phage	4.0e-26	68.1
YP_005220900.1\|84893_85328_-	hypothetical protein	A0A1V0E7W1	Vibrio_phage	9.5e-14	36.4
YP_005220901.1\|85486_86017_+	putative transcriptional regulator	J9Q6L0	Salmonella_phage	3.5e-71	84.5
YP_005220902.1\|86149_86329_+	hypothetical protein	NA	NA	NA	NA
YP_005220903.1\|86650_87301_+	hypothetical protein	J9Q754	Salmonella_phage	8.4e-107	91.7
YP_005220904.1\|87351_87555_+	hypothetical protein	J9Q7I3	Salmonella_phage	5.4e-28	95.5
YP_005220905.1\|88149_88632_-	hypothetical protein	J9Q805	Salmonella_phage	2.9e-64	70.0
YP_005220906.1\|88836_89034_-	hypothetical protein	J9Q753	Salmonella_phage	2.9e-26	81.5
YP_005220907.1\|88986_89139_+	hypothetical protein	NA	NA	NA	NA
YP_005220908.1\|89243_89663_-	hypothetical protein	NA	NA	NA	NA
YP_005220909.1\|89770_90070_-	hypothetical protein	J9Q7T7	Salmonella_phage	5.0e-30	70.7
YP_005220910.1\|90218_90431_-	hypothetical protein	J9Q804	Salmonella_phage	7.6e-25	74.3
YP_005220911.1\|90443_90662_-	hypothetical protein	J9Q6K7	Salmonella_phage	6.4e-27	81.9

DBSCAN-SWA_2

94608 : 122799

Salmonella_phage(82.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005220915.1\|94608_96165_+	type I restriction enzyme	A0A2H4PQP4	Staphylococcus_phage	5.8e-106	42.9
YP_005220916.1\|96161_97358_+	Restriction modification system DNA specificity domain protein	NA	NA	NA	NA
YP_005220917.1\|97433_97715_+	HsdR protein	NA	NA	NA	NA
YP_005220918.1\|97668_100164_+	putative type I restriction-modification enzyme R subunit	A0A220A398	Liberibacter_phage	4.8e-25	23.8
YP_005220919.1\|100259_100550_+	putative type I restriction-modification enzyme R subunit	NA	NA	NA	NA
YP_005220920.1\|100611_100827_-	putative DNA modification methylase	J9Q747	Salmonella_phage	1.2e-14	69.8
YP_005220921.1\|100955_101534_-	hypothetical protein	J9Q7H6	Salmonella_phage	5.1e-55	57.0
YP_005220922.1\|101661_101817_-	hypothetical protein	H6WZJ7	Escherichia_phage	1.7e-05	61.2
YP_005220923.1\|101816_102188_-	TciA	Q71TK7	Escherichia_phage	1.4e-50	82.9
YP_005220924.1\|102541_103204_-	hypothetical protein	J9Q6J9	Salmonella_phage	1.6e-28	46.5
YP_005220925.1\|103227_103896_-	putative ribonuclease H	J9Q745	Salmonella_phage	4.4e-119	93.2
YP_005220926.1\|104423_104657_-	hypothetical protein	J9Q7H5	Salmonella_phage	9.2e-32	85.5
YP_005220927.1\|104859_105453_-	hypothetical protein	J9Q7T2	Salmonella_phage	2.6e-107	94.9
YP_005220928.1\|105637_106471_-	hypothetical protein	J9Q7Z9	Salmonella_phage	1.1e-63	56.4
YP_005220929.1\|106596_107154_-	hypothetical protein	J9Q6J8	Salmonella_phage	1.4e-86	84.2
YP_005220930.1\|107163_107583_-	hypothetical protein	J9Q743	Salmonella_phage	1.9e-51	73.4
YP_005220931.1\|107646_108291_-	hypothetical protein	J9Q7H4	Salmonella_phage	6.8e-93	76.6
YP_005220932.1\|108290_108761_-	putative dihydrofolate reductase	J9Q7T1	Salmonella_phage	2.0e-70	78.7
YP_005220933.1\|108763_109159_-	hypothetical protein	J9Q7Z8	Salmonella_phage	2.6e-50	74.8
YP_005220934.1\|109178_110282_-	putative thymidylate synthase	J9Q6J6	Salmonella_phage	2.5e-180	79.8
YP_005220935.1\|110475_111351_-	hypothetical protein	J9Q742	Salmonella_phage	4.5e-140	84.7
YP_005220936.1\|111428_112571_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	9.0e-213	95.8
YP_005220937.1\|112701_115005_-	ribonucleotide-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	90.9
YP_005220938.1\|115080_115650_-	hypothetical protein	J9Q7Z7	Salmonella_phage	3.8e-95	90.5
YP_005220939.1\|115659_116370_-	hypothetical protein	J9Q6J5	Salmonella_phage	2.8e-71	57.6
YP_005220940.1\|116395_116980_-	RecF/RecN/SMC domain protein	J9Q741	Salmonella_phage	1.5e-91	91.1
YP_005220941.1\|116954_118313_-	putative exonuclease	J9Q741	Salmonella_phage	3.0e-199	81.8
YP_005220942.1\|118309_118543_-	hypothetical protein	J9Q7H1	Salmonella_phage	3.4e-18	66.1
YP_005220943.1\|118542_119628_-	putative exonuclease subunit 1	J9Q7S9	Salmonella_phage	2.0e-182	84.2
YP_005220944.1\|119626_119743_+	hypothetical protein	NA	NA	NA	NA
YP_005220945.1\|120126_120282_-	hypothetical protein	NA	NA	NA	NA
YP_005220946.1\|120280_120625_+	hypothetical protein	NA	NA	NA	NA
YP_005220947.1\|120647_121841_+	Chromosome segregation ATPase	X5JAC1	Clostridium_phage	5.0e-57	52.3
YP_005220948.1\|122154_122799_-	hypothetical protein	J9Q739	Salmonella_phage	8.3e-99	80.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_016839

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27996 : 48999

Escherichia_phage(25.0%)

integrase,transposase

attL 29554:29613|attR 49628:50827

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
YP_005221000.1\|27996_28701_+\|transposase	putative transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
YP_005221001.1\|29005_29563_+	hypothetical protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
29554:29613	attL	NA	NA	NA	NA
YP_005221002.1\|29745_30606_+	beta-lactamase	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
YP_005221003.1\|30775_31531_+	RmtB	NA	NA	NA	NA
YP_005221004.1\|31611_32160_-	putative Na(+)/H(+) antiporter	NA	NA	NA	NA
YP_005221005.1\|32195_32573_+\|integrase	GroEL-like/integrase protein	A0A2I7SAK5	Vibrio_phage	8.2e-22	58.1
YP_005221006.1\|32727_32886_-	hypothetical protein	NA	NA	NA	NA
YP_005221007.1\|32837_33491_+\|transposase	ISCR15b transposase	NA	NA	NA	NA
YP_005221008.1\|33487_34333_+\|transposase	transposase	NA	NA	NA	NA
YP_005221009.1\|34424_34904_-	putative LysR-type transcriptional regulator	NA	NA	NA	NA
YP_005221010.1\|34859_35138_+	hypothetical protein	NA	NA	NA	NA
YP_005221011.1\|35236_36412_-	tetracycline resistance protein	NA	NA	NA	NA
YP_005221012.1\|36515_37142_+	tetracycline repressor protein class G	NA	NA	NA	NA
YP_005221013.1\|37138_37321_-	hypothetical protein	NA	NA	NA	NA
YP_005221014.1\|37348_38563_-	putative chloramphenicol and florfenicol resistance protein (CmlA)	S4TR35	Salmonella_phage	9.8e-16	23.7
YP_005221015.1\|38779_39751_-	truncated dihydropteroate synthetase	NA	NA	NA	NA
YP_005221016.1\|39744_40092_-	Orf3/QacEdelta1 fusion protein	NA	NA	NA	NA
YP_005221017.1\|40255_41035_-	aminoglycoside adenylyltransferase	NA	NA	NA	NA
YP_005221018.1\|41092_41206_+	hypothetical protein	NA	NA	NA	NA
YP_005221019.1\|41219_41342_-	hypothetical protein	NA	NA	NA	NA
YP_005221020.1\|41493_41949_-	dihydrofolate reductase	A0A0A0PL85	Bacillus_phage	3.4e-22	41.0
YP_005221021.1\|42093_43107_+\|integrase	class I integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
YP_005221022.1\|43065_43245_-	putative transcriptional regulator	NA	NA	NA	NA
YP_005221023.1\|43381_44086_-	hypothetical protein	A0A077SL39	Escherichia_phage	1.8e-139	100.0
YP_005221024.1\|44076_44850_+	extended-spectrum beta-lactamase/aminoglycoside modifying enzyme fusion protein	NA	NA	NA	NA
YP_005221025.1\|44862_45405_+	hypothetical protein	NA	NA	NA	NA
YP_005221026.1\|45902_46076_-	hypothetical protein	NA	NA	NA	NA
YP_005221027.1\|46099_46327_+	hypothetical protein	NA	NA	NA	NA
YP_005221028.1\|46377_47514_+	hypothetical protein	NA	NA	NA	NA
YP_005221029.1\|47480_47630_-	hypothetical protein	NA	NA	NA	NA
YP_005221030.1\|47628_48999_+\|transposase	putative transposase	NA	NA	NA	NA
49628:50827	attR	NA	NA	NA	NA

DBSCAN-SWA_2

60211 : 91762

Salmonella_phage(50.0%)

integrase,transposase

attL 57750:57769|attR 98499:98518

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
57750:57769	attL	NA	NA	NA	NA
YP_005221050.1\|60211_61090_-\|integrase	integrase catalytic subunit	U5P429	Shigella_phage	2.6e-50	43.5
YP_005221051.1\|61086_61404_-\|transposase	transposase IS3/IS911 family protein	A9YX41	Burkholderia_phage	1.8e-09	39.0
YP_005221052.1\|61584_61803_+	hypothetical protein	NA	NA	NA	NA
YP_005221053.1\|61876_62434_+	pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component eukaryotic type beta subunit	NA	NA	NA	NA
YP_005221054.1\|62508_63360_+	NgrC	A0A219UQS0	Bacillus_phage	3.6e-09	29.4
YP_005221055.1\|63564_63711_+	hypothetical protein	NA	NA	NA	NA
YP_005221056.1\|63817_64204_+	hypothetical protein	NA	NA	NA	NA
YP_005221057.1\|64381_66109_+	hypothetical protein	A0A0P0ZFY3	Escherichia_phage	9.9e-14	32.6
YP_005221058.1\|66095_66374_+	hypothetical protein	NA	NA	NA	NA
YP_005221059.1\|66446_66686_+	permease	NA	NA	NA	NA
YP_005221060.1\|66695_66812_+	hypothetical protein	NA	NA	NA	NA
YP_005221061.1\|66932_67307_+	hypothetical protein	NA	NA	NA	NA
YP_005221062.1\|67420_68146_+	hypothetical protein	NA	NA	NA	NA
YP_005221063.1\|68120_68324_-	hypothetical protein	NA	NA	NA	NA
YP_005221064.1\|68386_72541_+	RhsD protein	A0A2H4JHK7	uncultured_Caudovirales_phage	5.7e-23	53.4
YP_005221065.1\|72537_72810_+	hypothetical protein	NA	NA	NA	NA
YP_005221066.1\|73104_73404_+	hypothetical protein	NA	NA	NA	NA
YP_005221067.1\|73570_74023_+	hypothetical protein	NA	NA	NA	NA
YP_005221068.1\|74038_74641_-	hypothetical protein	NA	NA	NA	NA
YP_005221069.1\|74902_75184_+	hypothetical protein	NA	NA	NA	NA
YP_005221070.1\|75482_76019_+	hypothetical protein	NA	NA	NA	NA
YP_005221071.1\|76021_77032_+\|integrase	integrase/recombinase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
YP_005221072.1\|77036_77906_+	exonuclease	A0A1S6L012	Salmonella_phage	3.5e-23	35.1
YP_005221073.1\|77902_78394_+	hypothetical protein	NA	NA	NA	NA
YP_005221074.1\|78439_78571_-	hypothetical protein	NA	NA	NA	NA
YP_005221075.1\|78720_79635_+	DNA replication terminus site-binding protein	NA	NA	NA	NA
YP_005221076.1\|79782_80814_-	hypothetical protein	A0A1B0VAH3	Salmonella_phage	1.2e-51	100.0
YP_005221077.1\|81014_82277_+\|transposase	transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
YP_005221078.1\|82257_82380_+	hypothetical protein	NA	NA	NA	NA
YP_005221079.1\|82526_83402_+	beta-lactamase CTX-M-14	A0A1B0VBP7	Salmonella_phage	6.1e-153	99.6
YP_005221080.1\|83481_84405_+\|transposase	transposase InsC for insertion sequence IS903	Q9MCT5	Escherichia_phage	2.2e-177	99.7
YP_005221081.1\|84446_84881_-	methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	1.6e-77	100.0
YP_005221082.1\|85034_85202_-	hypothetical protein	A0A1B0V7I9	Salmonella_phage	2.3e-24	98.2
YP_005221083.1\|85190_85751_+	Tn4653 resolvase	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
YP_005221084.1\|85754_88721_+\|transposase	transposase for transposon Tn1721	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
YP_005221085.1\|88923_89964_+	KfrA protein	NA	NA	NA	NA
YP_005221086.1\|90250_91762_+	putative DNA helicase	A0A2D1GN12	Pseudoalteromonas_phage	3.6e-44	30.7
98499:98518	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016845

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_016846

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_016838

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NC_016839

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection