CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP019186	Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 chromosome, complete genome	4 crisprs	PD-DExK,WYL,csa3,cas3,DEDDh,DinG	4	8
NZ_CP019188	Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 plasmid pATCC10729_02, complete sequence	0 crisprs	NA	0	1
NZ_CP019187	Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 plasmid pATCC10729_01, complete sequence	0 crisprs	csa3,DEDDh	0	6

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP019186_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019186_1

562572-562672

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAACGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019186_1

>merge|NZ_CP019186|1|562572-562672|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAAGGCGGTCGTAATTTCAGCGGAGAACGTCGTGAAGGTGGTCGTGGCGATGGTCGTCGCTTCAGCGGCGAACGTCGTGAA

>NZ_CP019186|1|1|562572-562672|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAA	GGCGGTCGTAATTTCAGCGGAGAACGTCGTGAAGGTGGTCGTGGCGATGGTCGTC
GCTTCAGCGGCGAACGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019186.1\|WP_010723222.1\|560769_560850_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP019186.1\|WP_001528113.1\|555928_556873_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP019186.1\|WP_000130432.1\|564220_565228_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP019186.1\|WP_001663052.1\|565404_566301_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP019186.1\|WP_000802069.1\|559779_560664_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP019186.1\|WP_001532495.1\|569938_570574_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP019186.1\|WP_000105461.1\|550621_551074_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP019186.1\|WP_000421309.1\|566291_567287_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP019186.1\|WP_000908562.1\|568021_568525_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP019186.1\|WP_001670767.1\|557534_559670_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP019186.1\|WP_000059465.1\|557023_557293_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP019186.1\|WP_001031038.1\|551101_552604_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP019186.1\|WP_001040208.1\|555527_555929_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP019186.1\|WP_000133064.1\|552628_555307_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP019186.1\|WP_000224373.1\|562885_564130_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP019186.1\|WP_076732669.1\|548650_550060_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP019186.1\|WP_000380407.1\|568866_569310_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP019186.1\|WP_000037599.1\|569289_569808_-\|protein/nucleic-acid-deglycase	unknown	unknown	gnl\|CDD\|153228
NZ_CP019186.1\|WP_000928379.1\|568511_568829_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP019186.1\|WP_000884721.1\|567503_568028_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696

Protein	Function_ID	Function_description	E-value
NZ_CP019186.1\|WP_010723222.1\|560769_560850_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.66225e-08
NZ_CP019186.1\|WP_001528113.1\|555928_556873_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP019186.1\|WP_000130432.1\|564220_565228_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP019186.1\|WP_001663052.1\|565404_566301_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP019186.1\|WP_000802069.1\|559779_560664_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP019186.1\|WP_001532495.1\|569938_570574_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.29768e-69
NZ_CP019186.1\|WP_000105461.1\|550621_551074_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79
NZ_CP019186.1\|WP_000421309.1\|566291_567287_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.77757e-116
NZ_CP019186.1\|WP_000908562.1\|568021_568525_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NZ_CP019186.1\|WP_001670767.1\|557534_559670_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP019186.1\|WP_000059465.1\|557023_557293_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54
NZ_CP019186.1\|WP_001031038.1\|551101_552604_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP019186.1\|WP_001040208.1\|555527_555929_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.271e-52
NZ_CP019186.1\|WP_000133064.1\|552628_555307_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP019186.1\|WP_000224373.1\|562885_564130_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP019186.1\|WP_076732669.1\|548650_550060_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP019186.1\|WP_000380407.1\|568866_569310_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.40078e-97
NZ_CP019186.1\|WP_000037599.1\|569289_569808_-\|protein/nucleic-acid-deglycase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	5.12939e-86
NZ_CP019186.1\|WP_000928379.1\|568511_568829_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.3214e-44
NZ_CP019186.1\|WP_000884721.1\|567503_568028_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.82299e-84

>NZ_CP019186.1|WP_010723222.1|560769_560850_+|protein-YrbN
MKIADQFHDELCRLAAINFEAHVLHG
>NZ_CP019186.1|WP_000802069.1|559779_560664_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NZ_CP019186.1|WP_001670767.1|557534_559670_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE
>NZ_CP019186.1|WP_000059465.1|557023_557293_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP019186.1|WP_001528113.1|555928_556873_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPIERMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDGKFIGMGEIDDEGRVAPRRLVVEYPA
>NZ_CP019186.1|WP_001040208.1|555527_555929_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIALILQREIKDPRVGMMTTVSGVEMSRDLAYAKVFVTFLNDQDEAAVKNGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NZ_CP019186.1|WP_000133064.1|552628_555307_+|translation-initiation-factor-IF-2
MTDVTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NZ_CP019186.1|WP_001031038.1|551101_552604_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP019186.1|WP_000105461.1|550621_551074_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP019186.1|WP_076732669.1|548650_550060_-|argininosuccinate-synthase
MHKNALKQKPISLSVNQAGFYSMTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEVVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKAK
>NZ_CP019186.1|WP_000224373.1|562885_564130_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNIVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFVPPIVGGLLWPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIALILVFGVGNAVIHILSSFNLLPVYQ
>NZ_CP019186.1|WP_000130432.1|564220_565228_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTQFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFWSPSEQYGVQQALSMSLVGDKAKVRHGLESILRETQADEIMVNGQIFDHQARLHSFDLAMDVKQELLG
>NZ_CP019186.1|WP_001663052.1|565404_566301_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVALSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPLPLASHSDCNGYWKRLAGLELQA
>NZ_CP019186.1|WP_000421309.1|566291_567287_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP019186.1|WP_000884721.1|567503_568028_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMKNSPETKQTSVGEPC
>NZ_CP019186.1|WP_000908562.1|568021_568525_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NZ_CP019186.1|WP_000928379.1|568511_568829_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>NZ_CP019186.1|WP_000380407.1|568866_569310_+|YhbP-family-protein
MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALYLLTDDKTRHAQMSGACAPVAGTVNGQPKTVTRIRGVQFKGVIRRLEGQESDAARKAYLRRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA
>NZ_CP019186.1|WP_000037599.1|569289_569808_-|protein/nucleic-acid-deglycase
MSKKIAVLITDEFEDSEFTSPAAEFRQAGHEVITIEKEAGKTVKGKKGEASVTIDKAIDDVRPDEFDALLLPGGHSPDYLRGDSRFVDFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>NZ_CP019186.1|WP_001532495.1|569938_570574_+|NAD(P)H-binding-protein
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMVVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAG

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Crispr_ID: NZ_CP019186_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019186_2

913074-913773

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

11 spacers

The CRISPR arrays of NZ_CP019186_2

>merge|NZ_CP019186|2|913074-913773|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCCAGAAAAGTTTGTTTAGGCAATCAAGCCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTATGAGGGCGCGCAACAGGCGATGCGTGAGTGTTCCCCGCGTCAGCGGGGATAAACCGCCGAAATACGATGCCGGAATATCGTAAACGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGGACGCTACTATCGGATTCGCTCCGGGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTTACTAAGGTCAACAAGGGATTGAATTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCATGCGCAGCACTGGATCGAGAGCGAAGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTGAGAACAGGGTGCATGGGAGGGAATAATTGTGTTTCCCGCGCCAGCGGGGATAAACCGCGTTACAGCCAGTTCATGGAAAGTTTCAGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCCAAAACATCTTTCCCTGGTTCCTCTCAGGTGTTCGCCGCGCCAGCGGGGATAAACCGGGGATCGCGTTGGCGGTCGCATCCGTTGCCGTGTGTTACCCGCGTCAGCGGGGATAAACCGTACCAACAATTCAGCGTTACGCCAACGGTAACGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP019186|2|1|913074-913712|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATGAGGGCGCGCAACAGGCGATGCGTGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CCGAAATACGATGCCGGAATATCGTAAACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGGACGCTACTATCGGATTCGCTCCGGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTACTAAGGTCAACAAGGGATTGAATTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATGCGCAGCACTGGATCGAGAGCGAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGAACAGGGTGCATGGGAGGGAATAATT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG

>NZ_CP019186|2|2|913074-913773|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATGAGGGCGCGCAACAGGCGATGCGTGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CCGAAATACGATGCCGGAATATCGTAAACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGGACGCTACTATCGGATTCGCTCCGGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTACTAAGGTCAACAAGGGATTGAATTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATGCGCAGCACTGGATCGAGAGCGAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGAACAGGGTGCATGGGAGGGAATAATT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP019186|2|1|913074-913773|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTATGAGGGCGCGCAACAGGCGATGCGTGA
GTGTTCCCCGCGTCAGCGGGGATAAACCG	CCGAAATACGATGCCGGAATATCGTAAACGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGGACGCTACTATCGGATTCGCTCCGGGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATTTACTAAGGTCAACAAGGGATTGAATTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATGCGCAGCACTGGATCGAGAGCGAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGAGAACAGGGTGCATGGGAGGGAATAATT
GTGTTTCCCGCGCCAGCGGGGATAAACCG	CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG
GTGTTCGCCGCGCCAGCGGGGATAAACCG	GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT
GTGTTACCCGCGTCAGCGGGGATAAACCG	TACCAACAATTCAGCGTTACGCCAACGGTAAC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019186.1\|WP_000046866.1\|902871_904167_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP019186.1\|WP_000080400.1\|919140_919875_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019186.1\|WP_000210867.1\|908951_910589_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019186.1\|WP_000490473.1\|922993_924040_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019186.1\|WP_000036734.1\|910671_911970_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP019186.1\|WP_000210909.1\|915553_917353_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019186.1\|WP_001173663.1\|926634_927240_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP019186.1\|WP_000372384.1\|924290_925199_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019186.1\|WP_000633744.1\|906859_907156_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP019186.1\|WP_001199956.1\|912105_912777_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019186.1\|WP_001667037.1\|913870_914668_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019186.1\|WP_000706486.1\|898871_900014_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP019186.1\|WP_000108312.1\|914755_915118_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019186.1\|WP_000210455.1\|907923_908724_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019186.1\|WP_000226837.1\|904218_906453_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP019186.1\|WP_000186399.1\|900057_902814_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP019186.1\|WP_001092269.1\|925208_926648_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019186.1\|WP_001145533.1\|919962_920916_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019186.1\|WP_001290665.1\|917352_919065_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019186.1\|WP_072102304.1\|906537_906894_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136

Protein	Function_ID	Function_description	E-value
NZ_CP019186.1\|WP_000046866.1\|902871_904167_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP019186.1\|WP_000080400.1\|919140_919875_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
NZ_CP019186.1\|WP_000210867.1\|908951_910589_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019186.1\|WP_000490473.1\|922993_924040_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019186.1\|WP_000036734.1\|910671_911970_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP019186.1\|WP_000210909.1\|915553_917353_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019186.1\|WP_001173663.1\|926634_927240_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP019186.1\|WP_000372384.1\|924290_925199_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019186.1\|WP_000633744.1\|906859_907156_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	6.68104e-12
NZ_CP019186.1\|WP_001199956.1\|912105_912777_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NZ_CP019186.1\|WP_001667037.1\|913870_914668_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.4605e-101
NZ_CP019186.1\|WP_000706486.1\|898871_900014_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP019186.1\|WP_000108312.1\|914755_915118_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
NZ_CP019186.1\|WP_000210455.1\|907923_908724_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.26268e-157
NZ_CP019186.1\|WP_000226837.1\|904218_906453_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP019186.1\|WP_000186399.1\|900057_902814_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP019186.1\|WP_001092269.1\|925208_926648_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019186.1\|WP_001145533.1\|919962_920916_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019186.1\|WP_001290665.1\|917352_919065_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019186.1\|WP_072102304.1\|906537_906894_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	7.81781e-20

>NZ_CP019186.1|WP_001199956.1|912105_912777_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019186.1|WP_000036734.1|910671_911970_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019186.1|WP_000210867.1|908951_910589_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPGNERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP019186.1|WP_000210455.1|907923_908724_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFTSIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP019186.1|WP_000633744.1|906859_907156_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MITVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP019186.1|WP_072102304.1|906537_906894_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDDNGKINAKGQ
>NZ_CP019186.1|WP_000226837.1|904218_906453_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP019186.1|WP_000046866.1|902871_904167_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVILTEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSITLQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCLPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATCAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP019186.1|WP_000186399.1|900057_902814_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP019186.1|WP_000706486.1|898871_900014_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIVQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP019186.1|WP_001667037.1|913870_914668_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019186.1|WP_000108312.1|914755_915118_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP019186.1|WP_000210909.1|915553_917353_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NZ_CP019186.1|WP_001290665.1|917352_919065_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP019186.1|WP_000080400.1|919140_919875_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019186.1|WP_001145533.1|919962_920916_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>NZ_CP019186.1|WP_000490473.1|922993_924040_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019186.1|WP_000372384.1|924290_925199_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019186.1|WP_001092269.1|925208_926648_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019186.1|WP_001173663.1|926634_927240_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS

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Crispr_ID: NZ_CP019186_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019186_3

922890-922977

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019186_3

>merge|NZ_CP019186|3|922890-922977|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCTTAACGGATTAGGTAGTAACCTGAAACAGGGTGTTCCCCGCGCCAGCGGGGATAAAC

>NZ_CP019186|3|3|922890-922977|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCCTTAACGGATTAGGTAGTAACCTGAAACAGG
GTGTTCCCCGCGCCAGCGGGGATAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019186.1\|WP_000080400.1\|919140_919875_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP019186.1\|WP_000210909.1\|915553_917353_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP019186.1\|WP_000490473.1\|922993_924040_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP019186.1\|WP_000517480.1\|927804_928116_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP019186.1\|WP_001145533.1\|919962_920916_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP019186.1\|WP_000210867.1\|908951_910589_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP019186.1\|WP_001173663.1\|926634_927240_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP019186.1\|WP_000372384.1\|924290_925199_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP019186.1\|WP_001199956.1\|912105_912777_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP019186.1\|WP_001667037.1\|913870_914668_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP019186.1\|WP_001221538.1\|930350_931112_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP019186.1\|WP_000741644.1\|928134_928845_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP019186.1\|WP_000108312.1\|914755_915118_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP019186.1\|WP_000210455.1\|907923_908724_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP019186.1\|WP_001219244.1\|928844_929324_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP019186.1\|WP_000134249.1\|929320_930370_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP019186.1\|WP_001092269.1\|925208_926648_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP019186.1\|WP_000036734.1\|910671_911970_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP019186.1\|WP_001290665.1\|917352_919065_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP019186.1\|WP_001118109.1\|927257_927614_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891

Protein	Function_ID	Function_description	E-value
NZ_CP019186.1\|WP_000080400.1\|919140_919875_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.30149e-138
NZ_CP019186.1\|WP_000210909.1\|915553_917353_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP019186.1\|WP_000490473.1\|922993_924040_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP019186.1\|WP_000517480.1\|927804_928116_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP019186.1\|WP_001145533.1\|919962_920916_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP019186.1\|WP_000210867.1\|908951_910589_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP019186.1\|WP_001173663.1\|926634_927240_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP019186.1\|WP_000372384.1\|924290_925199_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP019186.1\|WP_001199956.1\|912105_912777_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NZ_CP019186.1\|WP_001667037.1\|913870_914668_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	2.4605e-101
NZ_CP019186.1\|WP_001221538.1\|930350_931112_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP019186.1\|WP_000741644.1\|928134_928845_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.63431e-118
NZ_CP019186.1\|WP_000108312.1\|914755_915118_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
NZ_CP019186.1\|WP_000210455.1\|907923_908724_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.26268e-157
NZ_CP019186.1\|WP_001219244.1\|928844_929324_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP019186.1\|WP_000134249.1\|929320_930370_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP019186.1\|WP_001092269.1\|925208_926648_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP019186.1\|WP_000036734.1\|910671_911970_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP019186.1\|WP_001290665.1\|917352_919065_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP019186.1\|WP_001118109.1\|927257_927614_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49

>NZ_CP019186.1|WP_001145533.1|919962_920916_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKATVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>NZ_CP019186.1|WP_000080400.1|919140_919875_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNVQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP019186.1|WP_001290665.1|917352_919065_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP019186.1|WP_000210909.1|915553_917353_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NZ_CP019186.1|WP_000108312.1|914755_915118_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP019186.1|WP_001667037.1|913870_914668_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP019186.1|WP_001199956.1|912105_912777_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP019186.1|WP_000036734.1|910671_911970_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP019186.1|WP_000210867.1|908951_910589_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPGNERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP019186.1|WP_000210455.1|907923_908724_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFTSIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP019186.1|WP_000490473.1|922993_924040_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPEPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP019186.1|WP_000372384.1|924290_925199_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP019186.1|WP_001092269.1|925208_926648_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP019186.1|WP_001173663.1|926634_927240_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP019186.1|WP_001118109.1|927257_927614_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP019186.1|WP_000517480.1|927804_928116_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP019186.1|WP_000741644.1|928134_928845_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAALQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP019186.1|WP_001219244.1|928844_929324_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP019186.1|WP_000134249.1|929320_930370_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDSGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP019186.1|WP_001221538.1|930350_931112_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: NZ_CP019186_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP019186_4

3171163-3171252

Orphan

Consensus_repeat	Method
AAACAGTACTCGTCCGTAGGCCGGATAAGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP019186_4

>merge|NZ_CP019186|4|3171163-3171252|CRISPRCasFinder
AAACAGTACTCGTCCGTAGGCCGGATAAGACGCTTCGCGTCGCCATCCGGCAGTCACAAAACAGTACTCGCCCGTAGGCCGGATAAGACG

>NZ_CP019186|4|4|3171163-3171252|CRISPRCasFinder
AAACAGTACTCGTCCGTAGGCCGGATAAGACG	CTTCGCGTCGCCATCCGGCAGTCACA
AAACAGTACTCGCCCGTAGGCCGGATAAGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP019186.1\|WP_001189860.1\|3176998_3177376_-\|DUF454-family-protein	unknown	unknown	gnl\|CDD\|182520
NZ_CP019186.1\|WP_000178238.1\|3179187_3182550_-\|mechanosensitive-channel-MscK	unknown	unknown	gnl\|CDD\|236892
NZ_CP019186.1\|WP_001250078.1\|3169153_3170116_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NZ_CP019186.1\|WP_000670401.1\|3161743_3163396_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|236566
NZ_CP019186.1\|WP_000186618.1\|3161147_3161627_+\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	unknown	unknown	gnl\|CDD\|182634
NZ_CP019186.1\|WP_000467098.1\|3173877_3174207_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_CP019186.1\|WP_000546202.1\|3165003_3166680_+\|Kef-family-K(+)-transporter	unknown	unknown	gnl\|CDD\|182633
NZ_CP019186.1\|WP_000051161.1\|3177985_3178153_+\|pleiotropic-regulatory-protein-RsmS	unknown	unknown	gnl\|CDD\|182920
NZ_CP019186.1\|WP_001220237.1\|3170343_3170988_-\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NZ_CP019186.1\|WP_000926656.1\|3177456_3177972_+\|primosomal-replication-protein-N''	unknown	unknown	gnl\|CDD\|182236
NZ_CP019186.1\|WP_000121971.1\|3174252_3176181_-\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236138
NZ_CP019186.1\|WP_000127350.1\|3176294_3176846_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP019186.1\|WP_000801783.1\|3168185_3169157_+\|acetyl-esterase	unknown	unknown	gnl\|CDD\|236660
NZ_CP019186.1\|WP_000440514.1\|3178222_3179146_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|368098
NZ_CP019186.1\|WP_000671592.1\|3166728_3168033_-\|inosine/guanosine-kinase	unknown	unknown	gnl\|CDD\|185033
NZ_CP019186.1\|WP_001251593.1\|3163568_3164789_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP019186.1\|WP_001195023.1\|3173272_3173878_-\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP019186.1\|WP_001523272.1\|3171287_3173162_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP019186.1\|WP_000421868.1\|3160151_3160946_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226258
NZ_CP019186.1\|WP_000488535.1\|3159238_3160066_+\|DUF1311-domain-containing-protein	unknown	unknown	gnl\|CDD\|377758

Protein	Function_ID	Function_description	E-value
NZ_CP019186.1\|WP_001189860.1\|3176998_3177376_-\|DUF454-family-protein	gnl\|CDD\|182520	PRK10527, PRK10527, DUF454 family protein.	1.23989e-73
NZ_CP019186.1\|WP_000178238.1\|3179187_3182550_-\|mechanosensitive-channel-MscK	gnl\|CDD\|236892	PRK11281, PRK11281, mechanosensitive channel MscK.	0
NZ_CP019186.1\|WP_001250078.1\|3169153_3170116_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	1.57177e-165
NZ_CP019186.1\|WP_000670401.1\|3161743_3163396_-\|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	gnl\|CDD\|236566	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed.	0
NZ_CP019186.1\|WP_000186618.1\|3161147_3161627_+\|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK	gnl\|CDD\|182634	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK.	6.60949e-111
NZ_CP019186.1\|WP_000467098.1\|3173877_3174207_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.74574e-46
NZ_CP019186.1\|WP_000546202.1\|3165003_3166680_+\|Kef-family-K(+)-transporter	gnl\|CDD\|182633	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional.	0
NZ_CP019186.1\|WP_000051161.1\|3177985_3178153_+\|pleiotropic-regulatory-protein-RsmS	gnl\|CDD\|182920	PRK11038, PRK11038, hypothetical protein; Provisional.	8.73514e-19
NZ_CP019186.1\|WP_001220237.1\|3170343_3170988_-\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	1.31162e-134
NZ_CP019186.1\|WP_000926656.1\|3177456_3177972_+\|primosomal-replication-protein-N''	gnl\|CDD\|182236	PRK10093, PRK10093, primosomal replication protein N''; Provisional.	6.67593e-81
NZ_CP019186.1\|WP_000121971.1\|3174252_3176181_-\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236138	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP019186.1\|WP_000127350.1\|3176294_3176846_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	8.05731e-100
NZ_CP019186.1\|WP_000801783.1\|3168185_3169157_+\|acetyl-esterase	gnl\|CDD\|236660	PRK10162, PRK10162, acetyl esterase.	0
NZ_CP019186.1\|WP_000440514.1\|3178222_3179146_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|368098	pfam04754, Transposase_31, Putative transposase, YhgA-like. This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.	2.0344e-116
NZ_CP019186.1\|WP_000671592.1\|3166728_3168033_-\|inosine/guanosine-kinase	gnl\|CDD\|185033	PRK15074, PRK15074, inosine/guanosine kinase; Provisional.	0
NZ_CP019186.1\|WP_001251593.1\|3163568_3164789_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.44171e-112
NZ_CP019186.1\|WP_001195023.1\|3173272_3173878_-\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.38799e-120
NZ_CP019186.1\|WP_001523272.1\|3171287_3173162_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP019186.1\|WP_000421868.1\|3160151_3160946_+\|hypothetical-protein	gnl\|CDD\|226258	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown].	2.26283e-107
NZ_CP019186.1\|WP_000488535.1\|3159238_3160066_+\|DUF1311-domain-containing-protein	gnl\|CDD\|377758	pfam07007, LprI, Lysozyme inhibitor LprI. This family consists of several bacterial proteins of around 120 residues in length. Members of this family contain four highly conserved cysteine residues. Family members include lipoprotein LprI from Mycobacterium, which binds to and inhibits macrophage lysozyme, which may aid bacterial survival.	4.66242e-09

>NZ_CP019186.1|WP_001220237.1|3170343_3170988_-|adenylate-kinase
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIVVDYVLEFDVPDELIVDRIVGRRVHAASGRVYHVKFNPPKVEGKDDVTGEDLTTRKDDQEETVRKRLVEYHQMTAPLIGYYQKEAEAGNTKYAKVDGTQAVADVRAALEKILG
>NZ_CP019186.1|WP_001250078.1|3169153_3170116_-|ferrochelatase
MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTPRLLWWPLLRGVILPLRSPRVAKLYQSIWMDGGSPLMVYSREQQQALAARLPDTPVALGMSYGSPSLESAVDELLASDVDHIVVLPLYPQYSCSTVGAVWDELGRILARKRRIPGISFIRDYADDGAYIDALAKSARESFARHGEPDVLLLSYHGIPQRYADEGDDYPQRCRDTTRELVSALGLPPEKVMMTFQSRFGREPWLTPYTDETLKMLGEKGTGHIQVMCPGFAADCLETLEEIAEQNREIFLEAGGKKYAYIPALNATPEHIDMMLKLTAPYR
>NZ_CP019186.1|WP_000801783.1|3168185_3169157_+|acetyl-esterase
MKPENKIPVLTRLSDEMTAVVNFQQPDLPPWPADGDIETQRQYYLLERRFWNADAPSMTTRTCVVPTPYGDVTTRLYSPQPTSQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQARYPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYGLQDSVSRRLFGGAWDGLTREDLDTYEKAYLRNDEDRESPWYCLFNNDLTHDVPPCFIASAEFDPLIDDSRLLHQTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKTPR
>NZ_CP019186.1|WP_000671592.1|3166728_3168033_-|inosine/guanosine-kinase
MKFPGKRKSKHYFPVNARDPLLQQIQPEQETNASWVVGIDQTLVDIEAKVDDDFITRYGLSAGHSLVIEDEVAEKLYQELTRENLITHQFAGGTIGNTMHNYSVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQAVDGPIGRCFTLIGESGERTFAISPGHMNQLRAESIPEAVIAGASALVLTSYLVRCKPGEPMPDATMKAIEYAKKHNVPVVMTLGTKFVIADNPQWWQAFLKENVSILAMNEEEAEALTGENDPLLAADKALDWVDLVLCTAGPIGLYMAGFTEEEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCINPLRVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYSSLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR
>NZ_CP019186.1|WP_000546202.1|3165003_3166680_+|Kef-family-K(+)-transporter
MHHATPLITTIVGGLVLAFILGMIANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAVAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLLDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMVEKGDVGIASLAVDMGITIGKVVAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLVLIQQPLAVLATLAIIVFGKSIAAFFLVRMFGHSPRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLEKYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGFGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMNLAHLDCARWLLLTIPNGYEAGEIVASAREKSPDIEIIARAHYDDEVKYITERGANQVVMGEREIARAMLELLETPPAGEVVAS
>NZ_CP019186.1|WP_001251593.1|3163568_3164789_+|MFS-transporter
MAMSEPTQPLAGAPAAAAKARTSFGILGAISLSHLLNDMIQSLILAIYPLLQAEFSLTFVQIGLITLTFQLASSLLQPVVGYWTDKYPMPWSLPVGMCFTLSGLVLLAMAGSFGGVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFGSSLGPLLAAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYAAQHRIAKGKPKAIIANPLPRNKVVLAVSVLLLLIFSKYFYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLVLPYATLYWTGILTVIIGFILASAFSAILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLIADHTSIYLVYKICAFLPLLGILTIFLPDNRHKA
>NZ_CP019186.1|WP_000670401.1|3161743_3163396_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase
MKFLKRGVALALLAAFALTTQPAQAYEKDKTYKITILHTNDHHGHFWRSEYGEYGLAAQKTLVDSIRKEVAQEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYDAMAVGNHEFDNPLTVLRQQEKWAKFPFLSANIYQKSTGERLFKPWAIFTRQDIKIAVIGLTTDDTAKIGNPEYFTDIEFRKPAEEANVVIQELNMNEKPDVIIATTHMGHYDNGDHGSNAPGDVEMARSLPAGSLAMIVGGHSQDPVCMASENKKQVNYVPGTPCAPDKQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWDNGKSERVLYTPEIAENPQMLSLLTPFQNKGKAQLEVKIGSVNGLLEGDRSKVRFVQTNMGRVILAAQIARTGADFGVMSGGGIRDSIEAGDITYKSVLKVQPFGNIVVYADMSGKEVVDYLTAVAQMKPDSGAYPQFANVSFVAKAGKLTDLKIKGEPVDPAKTYRMATLSFNATGGDGYPRIDNKPGYVNTGFIDAEVLKEFIQQNSPLDAAAFTPKGEVSWL
>NZ_CP019186.1|WP_000186618.1|3161147_3161627_+|Cys-tRNA(Pro)/Cys-tRNA(Cys)-deacylase-YbaK
MTPAVKLLEKNKIPFNIHTYDHDPNETNFGDEVVRKLGLNADQVYKTLLVAVNGDMKQLAVAVTPVAGQLDLKKVAKALGAKKVDMADPMVAQRTTGYLVGGISPLGQKKRLPTLIDAPARTFATIYVSGGKRGLDIELAADDLAAILGAKFADIARRD
>NZ_CP019186.1|WP_000421868.1|3160151_3160946_+|hypothetical-protein
MELLNQLKRLWRALRGTSNSWPAIDLSLPGGRHLHLVGSIHMGTRDMAPLPAKLVKKLRQADALVVEADISGNETPFSNLPKCPPLVERLSAGQLSALEKRVSELGMPLIHFDNQPLWQIAMVLQATQSQRLGLRPDYGIDYQLLQAAREVSLPVQELEGAKHQLELLCDLPDGGMALLDDTLTHWHTNARLLQVMIGWWLEQPPTSVGASLPRTFSQPLYDVLMVKRNEAWRDALLALPPGRYVVAVGALHLYGEGNLPQILK
>NZ_CP019186.1|WP_000488535.1|3159238_3160066_+|DUF1311-domain-containing-protein
MFRKAVTLLFLLSPAVSYAGLFDSSPELKCGNDNAVTAAKEWIYNEALGRLQQSYIKAPSTLFFDIPQTQYEQQLRAIPVQFSDVITQNPQPENANLRTCSATVTIGIPQPFLKLMKDLPDTLSYISQENSQVINNTMTWKEVNYNIQLADNNKDIVVTPVKKIYKLTWSIYVMARMTVSGDNLIKKKNSSLIEIAAKKFESRDRELNQVWNSLPASARTALKQEQRVWVTKKEQQCGKLSDAKSEALPAEKRISIYKCQLEMTIARTAYLDGSE
>NZ_CP019186.1|WP_001523272.1|3171287_3173162_-|molecular-chaperone-HtpG
MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTIADNGVGMNRDEVIDHLGTIAKSGTKSFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDKPENGVFWESAGEGEYTVADITKNDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDGETVISWEKINKAQALWTRNKSEIKDDEYNEFYKHIAHDFTDPLTWSHNRVEGKQEYTSLLYIPSQAPWDLWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSNDLPLNVSREILQDSTVTRNLRSALTKRVLQMLEKLAKDDAEKYQTFWKQFGLVLKEGPAEDHANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKNSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKAFQSVAKADESIEKLADEVDENAKEAEKALEPFVERVKTLLGDRVKEVRLTHRLTDTPAIVTTDADEMSTQMAKLFAAAGQSVPEVKYIFELNPDHVLVKRTADTEDEAQFKEWVELLLDQALFAERGTLEDPNQFIRRMNQLLVS
>NZ_CP019186.1|WP_001195023.1|3173272_3173878_-|recombination-protein-RecR
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLASEKISELILATNPTVEGEATANYIAELCAEAGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIIF
>NZ_CP019186.1|WP_000467098.1|3173877_3174207_-|YbaB/EbfC-family-nucleoid-associated-protein
MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF
>NZ_CP019186.1|WP_000121971.1|3174252_3176181_-|DNA-polymerase-III-subunit-gamma/tau
MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIAMVQLSPAALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLIGRKELPWAPDRRMGVEMTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMTPPQVQQQSAPAPQTSPAPLPASTSQVLAARNQLQRAQGVTKTKKSEPAAASRARPVNNSALERLASVSERVQARPAPSALETAPVKKEAYRWKATTPVVQTKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEQNGNAVCLHLRSTQRHLNSSGAQQKLAQALSDLTGETVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI
>NZ_CP019186.1|WP_000127350.1|3176294_3176846_-|adenine-phosphoribosyltransferase
MTATAQQLEFLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYELEYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQRLEKQGITCYSLVPFPGH
>NZ_CP019186.1|WP_001189860.1|3176998_3177376_-|DUF454-family-protein
MQRTILIIIGWLAVVLGTLGVVLPLLPTTPFILLAAWCFARSSPRFHAWLLYRSWFGGYLRHWQRYRAMPPGAKPRAIALILLTFGISLWLVNMMWVRVLLLVILACLLIFMWRIPVIDEKQQKR
>NZ_CP019186.1|WP_000926656.1|3177456_3177972_+|primosomal-replication-protein-N''
MLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQGYLEEADANLATLRQAVKHEQLPQVAWLAEHLASQLEAISRETAAWSLRQWDTAAPGLGRWQRRRIQHQEFERRLLAMTQERKIRLAQATSLVEQQTLQKEVEIYEGRLARCRHALEKIENVLARLTR
>NZ_CP019186.1|WP_000051161.1|3177985_3178153_+|pleiotropic-regulatory-protein-RsmS
MSLENAPDEVKLAVDLIVLLEENRLPARTVLRALEIVMRDYENKLKSTEDDSQTE
>NZ_CP019186.1|WP_000440514.1|3178222_3179146_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MERLPTTPHDAVFRQMLMQKEVARDFLAIHLPEDFLAICDLDSLKLESGSFVEDNLRSRYSDILYSLHTQHGPGYVYALIEHQSKSDRLMAFRLMRYAIAAMQRHLDAGHDTLPLVVPILFYHGPESPWPYSLNWHNMFVKPDMAKALYSCEFALVDLTIMPDNQLLQHRRIAMLELLQKHIRQRDLSELLDPLITLLTQDHLTDTQLSVLINYMLKAGNATEPRALIRQLAQGAPQYKEQLMTIAEWLEEKGRTEGLRKGLEQGLAQGREAEARAIARKMLANGLEPGLIASVTGITPEELSTLSH
>NZ_CP019186.1|WP_000178238.1|3179187_3182550_-|mechanosensitive-channel-MscK
MTMLQLYKRSQHFVFITISVLIILLSCQSLAFARGQTNGDLPSKADVQNQLDTLNKQKDLSAQDKLVQQDLIDTLATLEKIERVKEETVQLRQKVAQAPEKMRQATAALNALSDVDNDDEMRKTLSALSLRQLELRVAQVLDDLQNSQNDLAAYNSQLVSLQTQPERVQNAMYTASQQIQQIRNRLDGNNVGEAALRPSQQVLLQAKQALLNAQIDQQRKSLEGNTVLQDTLQKQRDYVTANSNRLEHQLQLLQEAVNSKRLTLTEKTAQEAISPDETARIQANPLVKQELDINHQLSQRLIVATENGNMLMQQNIKVKNWLDRALQSERNIKEQIAVLKGSLLLSRILYQQQQTLPSADELEDMTNRIADLRLEQFEINQQRDALFQSDAFVDKLEEGHTSEVNDEVHDALLQVVEMRRELLDQLNKQLGNQLMMAINLQVNQQQLMSVSKNLKAILTQQIFWVNSNRPMDWDWLKAFPQTLKEQFSAMKITVNWQKAWPAVFIAFLAGLPLLLIAGLIRWRLKWLKAYQQKLAAAVGSLRNDSQLNTPKAILIDLIRALPVCLIILALGLILLTMQLNISDLLWAFSKKLAMFWLVFGLCWKVLEKEGVAIRHFGMPAQLTSHWRRQIVRISLALLPLHFWSVVAELSPLNLMDDVLGQAVIFLNLLVITLLVWPLCRESWRDKESHGIRLVTVTILSIIPVALMVLTATGYFYTTLRLAGRWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPQEEPAIALEQINQQTLRITMLLMLALFGVMFWAIWSDLITVFSYLDSITLWHYNGSEAGAAVVKSVTMGSLLFAIIAAMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYVIIAVGAMTVFGSLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGTYSGTVSKIRIRATTITDFDRKEVIIPNKAFVTERLINWSLSDTTTRLVIRLGVAYGSDLEKVKRVLLQAAMEHPKVMHDPEPAVFFTTFGASTLDHELRLYVRELRDRSHTVDELNRAIDRLCRENDINIAFNQLEVHLHNAKGDEVTEVKRDLNGGDLAPTAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP019186_4	4.1\|3171195\|26\|NZ_CP019186\|CRISPRCasFinder	3171195-3171220	26	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	641392-641417	4	0.846
NZ_CP019186_4	4.1\|3171195\|26\|NZ_CP019186\|CRISPRCasFinder	3171195-3171220	26	NC_009468	Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence	142307-142332	5	0.808
NZ_CP019186_2	2.10\|913652\|32\|NZ_CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	NZ_CP041606	Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence	6595-6626	6	0.812
NZ_CP019186_2	2.10\|913652\|32\|NZ_CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
NZ_CP019186_2	2.1\|913103\|32\|NZ_CP019186\|PILER-CR,CRISPRCasFinder,CRT	913103-913134	32	MK605244	Nodularia phage vB_NspS-kac65v162, complete genome	141954-141985	8	0.75
NZ_CP019186_2	2.1\|913103\|32\|NZ_CP019186\|PILER-CR,CRISPRCasFinder,CRT	913103-913134	32	MK605242	Nodularia phage vB_NspS-kac65v151, complete genome	141539-141570	8	0.75
NZ_CP019186_2	2.1\|913103\|32\|NZ_CP019186\|PILER-CR,CRISPRCasFinder,CRT	913103-913134	32	MK605243	Nodularia phage vB_NspS-kac65v161, complete genome	141656-141687	8	0.75
NZ_CP019186_2	2.10\|913652\|32\|NZ_CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	20537-20568	9	0.719
NZ_CP019186_2	2.10\|913652\|32\|NZ_CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	222471-222502	9	0.719
NZ_CP019186_2	2.10\|913652\|32\|NZ_CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	MT075871	Klebsiella phage vB_KleS-HSE3, complete genome	29026-29057	9	0.719
NZ_CP019186_2	2.3\|913225\|32\|NZ_CP019186\|PILER-CR,CRISPRCasFinder,CRT	913225-913256	32	NZ_AP019800	Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence	202595-202626	10	0.688
NZ_CP019186_2	2.10\|913652\|32\|NZ_CP019186\|PILER-CR,CRISPRCasFinder,CRT	913652-913683	32	MN694675	Marine virus AFVG_250M635, complete genome	6608-6639	10	0.688

1. spacer 4.1|3171195|26|NZ_CP019186|CRISPRCasFinder matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

cttcgcgtcgccatccggcagtcaca	CRISPR spacer
cctcgcgtcgccatccggccgacacc	Protospacer
*.***************** * ***

2. spacer 4.1|3171195|26|NZ_CP019186|CRISPRCasFinder matches to NC_009468 (Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence) position: , mismatch: 5, identity: 0.808

cttcgcgtcgccatccggcagtcaca	CRISPR spacer
tcatgcgtcgccatccggcagtcgca	Protospacer
.. .*******************.**

3. spacer 2.10|913652|32|NZ_CP019186|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041606 (Streptomyces sp. S1D4-14 plasmid pS1D4-14.2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcgttggaggtcgcctccgacgactt	Protospacer
************* ****** **** .* * *

4. spacer 2.10|913652|32|NZ_CP019186|PILER-CR,CRISPRCasFinder,CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgttggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

5. spacer 2.1|913103|32|NZ_CP019186|PILER-CR,CRISPRCasFinder,CRT matches to MK605244 (Nodularia phage vB_NspS-kac65v162, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

6. spacer 2.1|913103|32|NZ_CP019186|PILER-CR,CRISPRCasFinder,CRT matches to MK605242 (Nodularia phage vB_NspS-kac65v151, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

7. spacer 2.1|913103|32|NZ_CP019186|PILER-CR,CRISPRCasFinder,CRT matches to MK605243 (Nodularia phage vB_NspS-kac65v161, complete genome) position: , mismatch: 8, identity: 0.75

cccagaaaagtttgtttaggcaatcaagcccc	CRISPR spacer
ccagaaggtgtttgtataggcaaacaagcccc	Protospacer
** ..*.. ****** ******* ********

8. spacer 2.10|913652|32|NZ_CP019186|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcattgccggtcgcatcgatgacgac	Protospacer
********.*** ********** .* .* ..

9. spacer 2.10|913652|32|NZ_CP019186|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gtgatcgccttgccggtcgcatccgccgaaac	Protospacer
* ****** *** ************..*  ..

10. spacer 2.10|913652|32|NZ_CP019186|PILER-CR,CRISPRCasFinder,CRT matches to MT075871 (Klebsiella phage vB_KleS-HSE3, complete genome) position: , mismatch: 9, identity: 0.719

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
gggatcgcgtaggcggccgcatcgactacaag	Protospacer
********** *****.****** ..*.* .

11. spacer 2.3|913225|32|NZ_CP019186|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019800 (Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence) position: , mismatch: 10, identity: 0.688

ccgaaatacgatgccggaatatcgtaaacgga	CRISPR spacer
ccgaaatacgatgcccaaatatctgggttgat	Protospacer
*************** .******  .. .*.

12. spacer 2.10|913652|32|NZ_CP019186|PILER-CR,CRISPRCasFinder,CRT matches to MN694675 (Marine virus AFVG_250M635, complete genome) position: , mismatch: 10, identity: 0.688

gggatcgcgttggcggtcgcatccgttgccgt	CRISPR spacer
tttgctgaattggcggacgcatccattgccgt	Protospacer
   ...* .******* *******.*******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1600939 : 1610110

Enterobacteria_phage(66.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|1600939_1601887_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
WP_000824854.1\|1601870_1602602_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1602582_1602690_-	protein YohO	NA	NA	NA	NA
WP_001240416.1\|1602749_1603481_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272847.1\|1603703_1605389_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.8e-278	91.1
WP_000598637.1\|1605385_1606105_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950412.1\|1606151_1606619_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-74	90.3
WP_001221797.1\|1606675_1607206_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703136.1\|1607377_1607836_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
WP_000195336.1\|1608076_1610110_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_2

1677276 : 1685225

Klebsiella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001144950.1\|1677276_1678680_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.8e-21	26.3
WP_001606097.1\|1678831_1679827_+	NAD-dependent epimerase/dehydratase family protein	A0A1V0QG29	Shearwaterpox_virus	1.5e-09	25.6
WP_001667086.1\|1680053_1680947_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	6.2e-44	41.7
WP_000697847.1\|1681323_1682397_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.1e-103	54.7
WP_001667087.1\|1682398_1683262_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	2.4e-109	67.4
WP_001102659.1\|1683265_1683661_+	WxcM-like domain-containing protein	NA	NA	NA	NA
WP_000469855.1\|1683660_1684125_+	N-acetyltransferase	NA	NA	NA	NA
WP_000612010.1\|1684121_1685225_+	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	1.9e-42	30.7

DBSCAN-SWA_3

1763613 : 1770881

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|1763613_1764033_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457656.1\|1764035_1765304_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.9e-228	92.4
WP_000208509.1\|1765757_1765970_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131109.1\|1765980_1766169_+	hypothetical protein	NA	NA	NA	NA
WP_001080678.1\|1766429_1767641_-	porin	Q1MVN1	Enterobacteria_phage	8.9e-110	56.2
WP_000107430.1\|1768290_1768590_+	membrane protein	NA	NA	NA	NA
WP_000377035.1\|1768681_1769377_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	8.1e-07	27.1
WP_001157306.1\|1769450_1770881_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	58.1

DBSCAN-SWA_4

1875196 : 1884571

Salmonella_phage(37.5%)

integrase,tail

attL 1869639:1869653|attR 1880538:1880552

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1869639:1869653	attL	NA	NA	NA	NA
WP_000856225.1\|1875196_1875427_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
WP_001633679.1\|1875564_1875939_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000979685.1\|1875939_1876815_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000722368.1\|1876831_1877185_+	YebY family protein	NA	NA	NA	NA
WP_000087640.1\|1877567_1878647_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	8.7e-101	52.5
WP_001530910.1\|1878643_1879750_-	exodeoxyribonuclease 8 (exodeoxyribonuclease viii)	Q9QF34	Lambdoid_phage	3.3e-55	66.7
WP_001014089.1\|1879780_1880068_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.9e-39	95.1
WP_001050884.1\|1880064_1880598_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	5.4e-11	44.8
1880538:1880552	attR	NA	NA	NA	NA
WP_000789530.1\|1880854_1881022_-	lytic enzyme	NA	NA	NA	NA
WP_024134652.1\|1881086_1881269_-	hypothetical protein	NA	NA	NA	NA
WP_000348550.1\|1881323_1881815_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	7.6e-44	56.2
WP_001529204.1\|1883676_1883997_+	hypothetical protein	A0A0M4QWS3	Salmonella_phage	2.9e-44	79.2
WP_000143159.1\|1883986_1884571_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	5.8e-83	80.6

DBSCAN-SWA_5

2058921 : 2065583

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000230462.1\|2058921_2059728_-	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	4.6e-14	27.4
WP_001128869.1\|2059729_2060722_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA
WP_001146139.1\|2060721_2061612_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_001605114.1\|2062434_2063157_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	4.3e-35	38.9
WP_001096568.1\|2063627_2063810_+	hypothetical protein	S4TSR3	Salmonella_phage	1.0e-22	77.6
WP_001605117.1\|2064059_2064200_+	hypothetical protein	A0A0U2KD26	Escherichia_phage	6.5e-09	77.1
WP_001605118.1\|2064238_2064538_+	putative pertussis-like toxin subunit	A0A0U2KD26	Escherichia_phage	3.2e-13	54.3
WP_000727928.1\|2064464_2064890_+	peptidase	NA	NA	NA	NA
WP_077905325.1\|2065268_2065583_+	recombinase family protein	A0A1S6L009	Salmonella_phage	4.3e-40	86.1

DBSCAN-SWA_6

2515069 : 2523342

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000497451.1\|2515069_2515309_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
WP_001529135.1\|2516180_2516990_+	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_001277616.1\|2517062_2517440_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_000158845.1\|2517587_2518130_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_000733630.1\|2518313_2519042_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	1.6e-61	52.5
WP_000275698.1\|2519058_2519472_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	5.5e-19	37.7
WP_000917276.1\|2520520_2521645_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_000444508.1\|2522091_2523342_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6

DBSCAN-SWA_7

2771765 : 2779533

Enterobacteria_phage(16.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086013161.1\|2771765_2773020_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	2.2e-18	34.5
WP_000934064.1\|2773169_2775446_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|2775476_2775797_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|2776120_2776342_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125900.1\|2776471_2778418_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_001201743.1\|2778414_2779533_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_8

3826211 : 3835011

Enterobacteria_phage(50.0%)

capsid,integrase

attL 3820547:3820563|attR 3833691:3833707

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3820547:3820563	attL	NA	NA	NA	NA
WP_000980370.1\|3826211_3826763_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-35	73.1
WP_024134649.1\|3827345_3827534_-	hypothetical protein	NA	NA	NA	NA
WP_077905969.1\|3827446_3828307_+\|capsid	capsid protein	NA	NA	NA	NA
WP_000468231.1\|3828310_3828550_+	hypothetical protein	Q7M294	Enterobacteria_phage	2.4e-19	59.3
WP_000214425.1\|3828565_3829132_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.3e-60	65.4
WP_001184065.1\|3829456_3832210_+	AAA family ATPase	A0A1B1IUG5	uncultured_Mediterranean_phage	5.8e-24	25.6
WP_071645930.1\|3832258_3833521_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	8.2e-74	41.0
WP_000152559.1\|3833991_3835011_+	NAD(P)-dependent alcohol dehydrogenase	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	2.1e-43	30.1
3833691:3833707	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP019188

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1202 : 94563

106

Escherichia_phage(56.31%)

head,plate,tail,integrase,holin

attL 35316:35332|attR 85324:85340

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001345482.1\|1202_1805_-	hypothetical protein	Q1MVM6	Enterobacteria_phage	5.4e-100	100.0
WP_000580776.1\|1791_2235_-	hypothetical protein	A0A077SK09	Escherichia_phage	1.3e-82	100.0
WP_000887652.1\|2231_2561_-\|holin	holin	Q37876	Escherichia_phage	1.3e-52	100.0
WP_000145199.1\|2635_2899_-	hypothetical protein	Q71TD9	Escherichia_phage	1.1e-22	67.1
WP_001165547.1\|3334_3907_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.4e-83	85.0
WP_072262638.1\|4438_4867_+\|tail	tail fiber protein	K7PH60	Enterobacterial_phage	1.8e-49	69.3
WP_072254261.1\|4895_5354_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	3.2e-44	57.9
WP_062878274.1\|5364_5826_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	2.9e-53	68.9
WP_102040440.1\|5836_6340_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	1.2e-39	54.1
WP_023156927.1\|6350_6779_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	1.3e-39	54.9
WP_064768341.1\|6789_7296_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	3.2e-53	64.1
WP_001376654.1\|7306_7765_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	2.2e-45	58.0
WP_000367945.1\|7764_8376_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	3.6e-83	78.6
WP_102040441.1\|8381_10832_-\|tail	phage tail protein	A0A1B0V7G4	Salmonella_phage	3.4e-07	63.5
WP_001286325.1\|10843_11278_-	hypothetical protein	A0A077SLL3	Escherichia_phage	7.4e-75	99.3
WP_001189832.1\|11356_12193_-	hypothetical protein	A0A1B0V7F2	Salmonella_phage	1.4e-154	100.0
WP_000047923.1\|12192_13626_-	bleomycin hydrolase	A0A1B0VAD6	Salmonella_phage	3.7e-272	100.0
WP_000002800.1\|13622_13979_-	hypothetical protein	Q71TP1	Escherichia_phage	1.0e-61	100.0
WP_000440164.1\|13978_17371_-	transglycosylase SLT domain-containing protein	Q1MVL3	Enterobacteria_phage	0.0e+00	97.9
WP_000926346.1\|17452_18334_-	hypothetical protein	Q71TC9	Escherichia_phage	6.3e-174	99.7
WP_000523980.1\|18348_18960_-	hypothetical protein	Q71TN8	Escherichia_phage	2.9e-109	99.5
WP_000188919.1\|18970_19537_-	hypothetical protein	Q71TN7	Escherichia_phage	3.3e-99	98.9
WP_000846124.1\|19595_19865_-	hypothetical protein	NA	NA	NA	NA
WP_000120525.1\|20133_20808_-	hypothetical protein	Q71TC4	Escherichia_phage	6.8e-19	94.0
WP_000245712.1\|21206_21428_+	host cell division inhibitor Icd-like protein	A0A077SLM6	Escherichia_phage	1.3e-38	100.0
WP_000743161.1\|21424_22468_+	phage antirepressor Ant	Q71TN2	Escherichia_phage	1.6e-176	95.1
WP_001187872.1\|22632_23433_+	protein kilA	Q1MVK4	Enterobacteria_phage	9.2e-148	99.2
WP_001667233.1\|23462_24308_+	hypothetical protein	Q1MVK3	Enterobacteria_phage	1.1e-151	98.9
WP_001369095.1\|24358_24604_+	hypothetical protein	A0A1B0VDM5	Salmonella_phage	3.5e-13	45.0
WP_001313475.1\|24785_24941_+	type I toxin-antitoxin system toxin HokD	A0A1I9LJU7	Stx_converting_phage	1.0e-15	92.2
WP_000509939.1\|25057_25567_-	hypothetical protein	Q1MVJ9	Enterobacteria_phage	1.3e-91	100.0
WP_000035301.1\|25578_26160_-	hypothetical protein	Q1MVJ8	Enterobacteria_phage	7.3e-102	97.4
WP_000041772.1\|26195_27011_-	hypothetical protein	A0A1B0V835	Salmonella_phage	1.4e-111	98.5
WP_000085146.1\|27020_28610_-	hypothetical protein	A0A1B0V7E4	Salmonella_phage	4.0e-304	98.9
WP_000067710.1\|28670_30377_-	hypothetical protein	Q71TM1	Escherichia_phage	0.0e+00	100.0
WP_000038866.1\|30602_31604_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.7e-178	100.0
WP_001285362.1\|31620_32817_-	ParA family protein	A0A077SL49	Escherichia_phage	1.6e-225	100.0
WP_001113742.1\|34086_34971_-	RepB family plasmid replication initiator protein	A0A077SLP3	Escherichia_phage	2.1e-161	100.0
WP_001281114.1\|35305_35698_-	hypothetical protein	A0A1B0VBK3	Salmonella_phage	2.4e-72	100.0
35316:35332	attL	NA	NA	NA	NA
WP_000007769.1\|35875_36298_-	hypothetical protein	A0A1B0VCB0	Salmonella_phage	2.7e-58	100.0
WP_000890198.1\|36337_37126_-	hypothetical protein	A0A1B0V830	Salmonella_phage	7.3e-121	99.6
WP_001311689.1\|37134_37314_-	hypothetical protein	A0A1B0V758	Salmonella_phage	3.1e-27	100.0
WP_001177860.1\|37588_37873_+	hypothetical protein	Q71TA2	Escherichia_phage	3.5e-49	100.0
WP_000472529.1\|37865_38771_+	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	1.6e-159	99.7
WP_000660973.1\|38767_41032_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A077SL51	Escherichia_phage	0.0e+00	68.4
WP_000900640.1\|42786_43212_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	1.8e-70	100.0
WP_000234829.1\|43211_43376_+	DUF3927 family protein	A0A1B0VDU8	Salmonella_phage	1.2e-17	100.0
WP_029365170.1\|43843_45208_+	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	1.2e-253	100.0
WP_001198665.1\|45207_46206_+	hypothetical protein	A0A1B0VCH7	Salmonella_phage	1.1e-195	100.0
WP_000535202.1\|46252_46885_-\|plate	baseplate protein	Q71TK2	Escherichia_phage	6.9e-90	100.0
WP_000212024.1\|46877_47894_-	hypothetical protein	Q1MVH7	Enterobacteria_phage	1.0e-191	99.7
WP_000602717.1\|47895_48681_-	hypothetical protein	Q71T90	Escherichia_phage	4.6e-144	99.6
WP_000896799.1\|48667_49396_-	hypothetical protein	A0A077SK19	Escherichia_phage	1.0e-137	99.6
WP_001141915.1\|49399_50617_-	hypothetical protein	Q71T88	Escherichia_phage	1.4e-224	100.0
WP_000235786.1\|50626_51004_-	hypothetical protein	Q38620	Escherichia_phage	2.2e-67	100.0
WP_000840931.1\|51150_51396_+	hypothetical protein	Q71T86	Escherichia_phage	5.7e-40	100.0
WP_000943607.1\|51398_51977_+	norphogenetic protein	Q71T85	Escherichia_phage	5.7e-107	99.5
WP_000096174.1\|52043_52199_+	hypothetical protein	Q71TJ4	Escherichia_phage	7.0e-20	100.0
WP_000484110.1\|52700_53327_+	norphogenetic protein	Q71T82	Escherichia_phage	6.1e-123	100.0
WP_001354545.1\|53323_54001_+	calcineurin phosphoesterase	A0A077SLQ6	Escherichia_phage	7.6e-135	100.0
WP_000684842.1\|53997_54699_+	hypothetical protein	Q71TJ0	Escherichia_phage	4.6e-143	99.1
WP_000107675.1\|55000_56263_+	hypothetical protein	A0A1B0V7L1	Salmonella_phage	7.8e-234	99.3
WP_000021755.1\|56335_56842_+	hypothetical protein	A0A077SK53	Escherichia_phage	5.4e-93	98.8
WP_000675640.1\|57036_57762_+	hypothetical protein	Q71T76	Escherichia_phage	3.4e-141	100.0
WP_024134675.1\|57801_57993_+	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	9.5e-19	83.1
WP_000042974.1\|57989_58205_+	hypothetical protein	NA	NA	NA	NA
WP_001667236.1\|58197_58842_+	hypothetical protein	Q1MVG0	Enterobacteria_phage	1.7e-131	98.6
WP_000151165.1\|58838_59492_+	ead/Ea22-like family protein	A5VWB1	Enterobacteria_phage	2.3e-35	58.1
WP_001289898.1\|59488_60241_+	ead/Ea22-like family protein	Q1MVF9	Enterobacteria_phage	8.8e-108	89.0
WP_031607748.1\|60754_61279_+	hypothetical protein	G9L6B3	Escherichia_phage	6.1e-100	99.4
WP_000628748.1\|61275_61992_+	DUF551 domain-containing protein	A0A2D1GLX9	Escherichia_phage	9.3e-67	60.1
WP_000516536.1\|62074_62308_+	hypothetical protein	A0A1B0V7L5	Salmonella_phage	4.3e-37	98.7
WP_000269002.1\|62486_62780_+	hypothetical protein	A0A077SK23	Escherichia_phage	1.6e-44	91.8
WP_000988654.1\|62786_63161_+	hypothetical protein	A0A1B0VBU7	Salmonella_phage	7.5e-68	99.2
WP_000057458.1\|63142_63817_+	hypothetical protein	A0A077SK55	Escherichia_phage	1.2e-116	98.6
WP_001261545.1\|63813_64176_+	hypothetical protein	Q71TI4	Escherichia_phage	4.9e-56	99.2
WP_001667237.1\|64837_65089_+	DNA polymerase III subunit theta	Q71T70	Escherichia_phage	7.6e-40	100.0
WP_001133670.1\|65095_65668_-	hypothetical protein	Q71TH9	Escherichia_phage	6.7e-108	100.0
WP_000506724.1\|65842_66232_+	DNA repair protein	A0A077SK24	Escherichia_phage	6.4e-70	99.2
WP_001190712.1\|66304_66526_+	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_001216045.1\|66525_66906_+	type II toxin-antitoxin system death-on-curing family toxin	Q71T66	Escherichia_phage	1.9e-63	100.0
WP_000113018.1\|66910_67090_+	hypothetical protein	Q71TH5	Escherichia_phage	1.2e-23	98.3
WP_000648834.1\|67117_68161_+	DUF968 domain-containing protein	A0A077SLM1	Escherichia_phage	4.3e-206	99.4
WP_001326849.1\|68249_68702_+	late promoter-activating protein	Q71T63	Escherichia_phage	3.0e-79	100.0
WP_000219618.1\|68787_69981_+	hypothetical protein	A0A077SL59	Escherichia_phage	4.7e-180	99.7
WP_000124159.1\|69980_71465_+	hypothetical protein	Q5QBP2	Enterobacteria_phage	4.3e-292	99.8
WP_000611656.1\|71489_72341_-	hypothetical protein	A0A077SLM8	Escherichia_phage	6.1e-158	99.6
WP_000874154.1\|72451_72661_-	hypothetical protein	Q5XLQ8	Enterobacteria_phage	4.8e-32	100.0
WP_000542334.1\|73265_73487_+	hypothetical protein	Q5QBN7	Enterobacteria_phage	2.2e-35	98.6
WP_000067530.1\|73494_74526_+\|integrase	tyrosine-type recombinase/integrase	Q71TG5	Escherichia_phage	9.9e-195	100.0
WP_001224243.1\|74576_74888_+	hypothetical protein	Q5XLQ4	Enterobacteria_phage	1.3e-44	94.2
WP_000848363.1\|75135_75696_+	Ref family protein	Q71TG3	Escherichia_phage	1.2e-101	98.9
WP_001408825.1\|75884_76526_+	hypothetical protein	A0A077SK30	Escherichia_phage	2.5e-111	97.2
WP_000072647.1\|76724_77333_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000747846.1\|77415_77664_-	hypothetical protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
WP_000224043.1\|77660_78101_-	hypothetical protein	A0A077SLF0	Escherichia_phage	1.7e-79	100.0
WP_001038182.1\|78134_84902_-	N-6 DNA methylase	Q1MVN7	Enterobacteria_phage	0.0e+00	98.7
WP_000774702.1\|84977_86687_+	hypothetical protein	A0A1B0V850	Salmonella_phage	0.0e+00	99.5
85324:85340	attR	NA	NA	NA	NA
WP_000132942.1\|86679_87699_+\|head	head processing protein	Q1MVN5	Enterobacteria_phage	6.4e-178	97.3
WP_001774475.1\|87990_88548_-	lysozyme	Q71TF3	Escherichia_phage	1.0e-105	98.9
WP_000068867.1\|88717_89206_+	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	1.9e-87	99.4
WP_001062013.1\|89403_90081_+	DUF2829 domain-containing protein	A0A1B0VBT1	Salmonella_phage	4.9e-126	98.2
WP_000432102.1\|90087_90870_+	hypothetical protein	A0A1B0VDP8	Salmonella_phage	2.7e-144	99.2
WP_001165936.1\|90899_91208_-	hypothetical protein	O21974	Escherichia_phage	5.4e-48	97.1
WP_000058805.1\|91197_94185_-	hypothetical protein	A0A1B0VFX4	Salmonella_phage	0.0e+00	99.4
WP_000175482.1\|94197_94563_-	hypothetical protein	Q1MVM8	Enterobacteria_phage	2.3e-45	99.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP019187

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 10484

uncultured_Caudovirales_phage(60.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001277466.1\|1376_1742_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087807.1\|1738_1975_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001446012.1\|1958_2078_-	hypothetical protein	NA	NA	NA	NA
WP_000993245.1\|2040_2253_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001162012.1\|2382_2940_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_001138071.1\|2942_5915_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.0
WP_001114211.1\|6179_6533_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-24	49.6
WP_000855178.1\|6580_6943_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_001010162.1\|6960_8712_+	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_000922626.1\|8756_10046_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	8.7e-172	74.0
WP_000065805.1\|10058_10484_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.2e-50	70.7

DBSCAN-SWA_2

16462 : 17017

Wolbachia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077905963.1\|16462_17017_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.6e-18	34.5

DBSCAN-SWA_3

49429 : 50263

unidentified_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000080851.1\|49429_50263_-	SAM-dependent DNA methyltransferase	H7BVT3	unidentified_phage	4.5e-12	37.4

DBSCAN-SWA_4

56762 : 73236

Enterobacteria_phage(23.08%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000218312.1\|56762_57317_-	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	3.3e-51	74.0
WP_015062665.1\|57647_57869_+	hypothetical protein	NA	NA	NA	NA
WP_003830759.1\|57991_58309_-	hypothetical protein	NA	NA	NA	NA
WP_001667048.1\|58343_58604_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	5.3e-12	47.5
WP_000761848.1\|58790_58982_-	hypothetical protein	NA	NA	NA	NA
WP_000108571.1\|59024_59531_-	antirestriction protein	A0A1I9S7Y0	Rhodococcus_phage	3.7e-09	29.8
WP_000274510.1\|60768_61188_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001104877.1\|61198_61420_-	hypothetical protein	NA	NA	NA	NA
WP_000085947.1\|61419_62097_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.9e-29	37.4
WP_000334635.1\|62448_63120_+	DNA breaking-rejoining protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.5e-79	59.5
WP_000600201.1\|63299_63722_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
WP_000457553.1\|63721_64993_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	2.7e-157	64.2
WP_000756331.1\|65138_66110_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	9.6e-115	68.9
WP_000817638.1\|66106_67312_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	1.7e-206	90.5
WP_003830762.1\|67919_69746_+	AAA family ATPase	E5E3R2	Burkholderia_phage	1.5e-12	23.2
WP_000695683.1\|69917_70268_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	2.4e-20	55.2
WP_000725002.1\|70416_70848_-	hypothetical protein	NA	NA	NA	NA
WP_001230590.1\|71084_72563_-	Cu(+)/Ag(+) sensor histidine kinase	W8CYF6	Bacillus_phage	1.8e-27	31.0
WP_000697973.1\|72555_73236_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	1.9e-32	36.5

DBSCAN-SWA_5

76587 : 83832

Leptospira_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000574019.1\|76587_79734_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	2.3e-61	22.5
WP_000758233.1\|79820_80261_+	hypothetical protein	NA	NA	NA	NA
WP_003830763.1\|80379_82833_+	Ag(+)-translocating P-type ATPase SilP	E4ZFI9	Streptococcus_phage	1.3e-80	34.9
WP_000843500.1\|82863_83061_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_001667049.1\|83091_83832_-	peptidoglycan DD-metalloendopeptidase family protein	E5G070	Clostridium_phage	8.0e-13	33.3

DBSCAN-SWA_6

88914 : 95487

Bacillus_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001188929.1\|88914_89595_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	2.1e-31	35.4
WP_000671200.1\|89591_90992_+	sensor histidine kinase	W8CYF6	Bacillus_phage	8.3e-19	26.7
WP_000753365.1\|91200_91635_+	hypothetical protein	NA	NA	NA	NA
WP_000091963.1\|92047_92644_+	recombinase family protein	A0A219Y912	Aeromonas_phage	1.4e-20	35.4
WP_000728912.1\|92767_93697_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	1.9e-75	52.8
WP_000176304.1\|93693_94305_-	DUF2913 family protein	NA	NA	NA	NA
WP_000429587.1\|94301_94697_-	hypothetical protein	NA	NA	NA	NA
WP_000278333.1\|94749_95487_-	hypothetical protein	K7RFY5	Vibrio_phage	9.7e-27	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP019186

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP019188

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP019187

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection