CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017033	Frateuria aurantia DSM 6220, complete sequence	2 crisprs	cas3,DinG,DEDDh,csa3,WYL	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017033_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017033_1

2111027-2111139

Orphan

Consensus_repeat	Method
TGGAACACCTGGAACACCTTGGAACAC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NC_017033_1

>merge|NC_017033|1|2111027-2111139|CRISPRCasFinder
TGGAACACCTGGAACACCTTGGAACACGTCAGGTGTTCCAAAGTGTGACGCTCATAAATGGCTCAACGGTGCGACCTCCCAGCCACTGGAACACCTGGAACACCTGGAACACC

>NC_017033|1|1|2111027-2111139|CRISPRCasFinder
TGGAACACCTGGAACACCTTGGAACAC	GTCAGGTGTTCCAAAGTGTGACGCTCATAAATGGCTCAACGGTGCGACCTCCCAGCCAC
TGGAACACCTGGAACACCTGGAACACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_017033.1\|WP_014403388.1\|2122517_2123819_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NC_017033.1\|WP_014403375.1\|2107899_2108520_-\|hypothetical-protein	unknown	unknown	unknown
NC_017033.1\|WP_052317875.1\|2108656_2109352_+\|hypothetical-protein	unknown	unknown	unknown
NC_017033.1\|WP_014403373.1\|2106550_2107522_-\|KilA-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|367917
NC_017033.1\|WP_041270516.1\|2101068_2102040_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NC_017033.1\|WP_014403379.1\|2112856_2113216_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NC_017033.1\|WP_014403385.1\|2118731_2119295_-\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NC_017033.1\|WP_014403378.1\|2111218_2112439_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|170049
NC_017033.1\|WP_014403368.1\|2102597_2104394_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|336282
NC_017033.1\|WP_014403380.1\|2113230_2113998_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_017033.1\|WP_014403369.1\|2104374_2105307_-\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|226990
NC_017033.1\|WP_014403372.1\|2106012_2106468_-\|hypothetical-protein	unknown	unknown	unknown
NC_017033.1\|WP_014403387.1\|2121536_2122223_+\|DUF2461-domain-containing-protein	unknown	unknown	gnl\|CDD\|274138
NC_017033.1\|WP_014403386.1\|2120061_2121516_+\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NC_017033.1\|WP_052317993.1\|2117817_2118702_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|183230
NC_017033.1\|WP_014403383.1\|2116387_2117773_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|236787
NC_017033.1\|WP_014403371.1\|2105668_2106016_-\|hypothetical-protein	unknown	unknown	unknown
NC_017033.1\|WP_014403382.1\|2115452_2116391_-\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NC_017033.1\|WP_014403370.1\|2105303_2105672_-\|hypothetical-protein	unknown	unknown	unknown
NC_017033.1\|WP_156803395.1\|2107521_2107746_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848

Protein	Function_ID	Function_description	E-value
NC_017033.1\|WP_014403369.1\|2104374_2105307_-\|toprim-domain-containing-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	9.19059e-45
NC_017033.1\|WP_014403368.1\|2102597_2104394_-\|DUF927-domain-containing-protein	gnl\|CDD\|336282	pfam06048, DUF927, Domain of unknown function (DUF927). Family of bacterial proteins of unknown function. The C-terminal half of this family contains a P-loop motif. The N-terminal domain appears to have a unique fold, which contains three Helices and two strands. Structural analyses show that helicases containing this domain form a hexameric ring with a positively charged central pore threading a single DNA strand through suggestive of a replicative function for this helicase.	1.05693e-101
NC_017033.1\|WP_014403387.1\|2121536_2122223_+\|DUF2461-domain-containing-protein	gnl\|CDD\|274138	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.	5.26535e-82
NC_017033.1\|WP_014403373.1\|2106550_2107522_-\|KilA-N-domain-containing-protein	gnl\|CDD\|367917	pfam04383, KilA-N, KilA-N domain. The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.	2.11294e-18
NC_017033.1\|WP_041270516.1\|2101068_2102040_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.7918e-33
NC_017033.1\|WP_014403379.1\|2112856_2113216_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	1.22479e-16
NC_017033.1\|WP_014403385.1\|2118731_2119295_-\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	1.34676e-117
NC_017033.1\|WP_014403378.1\|2111218_2112439_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	1.65588e-81
NC_017033.1\|WP_014403383.1\|2116387_2117773_-\|phosphoglucosamine-mutase	gnl\|CDD\|236787	PRK10887, glmM, phosphoglucosamine mutase; Provisional.	0
NC_017033.1\|WP_014403380.1\|2113230_2113998_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.40241e-122
NC_017033.1\|WP_052317993.1\|2117817_2118702_-\|dihydropteroate-synthase	gnl\|CDD\|183230	PRK11613, folP, dihydropteroate synthase; Provisional.	3.76819e-113
NC_017033.1\|WP_014403386.1\|2120061_2121516_+\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NC_017033.1\|WP_014403388.1\|2122517_2123819_-\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.24886e-78
NC_017033.1\|WP_014403382.1\|2115452_2116391_-\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	1.65259e-79
NC_017033.1\|WP_156803395.1\|2107521_2107746_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.12687e-18

>NC_017033.1|WP_052317875.1|2108656_2109352_+|hypothetical-protein
MLGLAIQQAGVLPKMTMTDHLSRFSVTLSDGTDMTPQLQRFAEIIGLDRIAPERYSLLLLLGLYGAKESGKQNPFKIIQEIKALEDPQIASNLKPATQFKHPPLKGLWHKHYLQDGIASMALNLRKGMDRYKLPWVEQRIAEAKAANEKRFFSMEDAAHIARDAVSDNWKRLTRDSVLTGEWLIYARYQNANYYLCLGKHQNDDAELRRQIDAICLHEFPFLSQILDQTAN
>NC_017033.1|WP_014403375.1|2107899_2108520_-|hypothetical-protein
MSGCSTEPCKHMTPSGHAYQIIESVAGSLIDLGFYDDDESFQRELLSKLVDVCCQGVTAAGLDKYHEKVLAMPESEQPEGPIHYGVISLMRCIYALRSDRFGNSTEAWNYVIEARFYADAILSQRCDVHAVKQSRTAVAKSGSKARHESSPHAEVKPLVRSAWAEWRGGAVSYRSTAAFCRDVVKQYPVIADPRTVARWVAEWDGQ
>NC_017033.1|WP_156803395.1|2107521_2107746_-|AlpA-family-phage-regulatory-protein
MMSHLVSQQAPVARLIRIAEVERTTGLKRASIYRHMAAGTFPASIKLSPACTAWSEAEVQAWIAQRIAASREAA
>NC_017033.1|WP_014403373.1|2106550_2107522_-|KilA-N-domain-containing-protein
MDGLSIASTSIRMDKAGRYCLNDLHQAAGGEQRHRPKYWLENQQTQDLVAEIEKGGITPIASKQRIGTYVIKQLAIAYATWVSPAFYLRVINAYEASTHRTDDWRRQRHVAASSHKIQAAMLQTVRAAQGKETEPHHYMNEAKLINWVVTGKFAGRDRDQMTMAELDLVGRLEGLNIMLLGQGIPYEDRKQRLMDLAASHRALPGTAGQTGGMRLVTEIQRAPDTKKAHPKASPIASISRIDDTSTAAQRHRMLQALRFGPVSTMYARRHLNIMMPGARIKELREAGHLIDTRLQAMTDDQGRKHPRVAIYTLRIASSTPEAA
>NC_017033.1|WP_014403372.1|2106012_2106468_-|hypothetical-protein
MQNRLTIACASAHHSHVPAQSGAGFGDPTYSRRNAPTRRFFVASCPAYGGVQWEAYGPAGFLEYRFANPLHPAAHGLATVRGGSNLSRNPTMAHHAQGASARTCTISHTSRFSFRPSGWLHVSSTDLDIFAAFVAGVVLSTCAFMAVEVLR
>NC_017033.1|WP_014403371.1|2105668_2106016_-|hypothetical-protein
MSAVTVPGFDPLNTPTYRGLRDVFVKLWTVLDEASFRSAILAKRASLTADDARAEFQTLATMTDQRTVYGQMQRLLVEAGANYDDERTELRATVRQLMAENQALRAAAAGGEVPR
>NC_017033.1|WP_014403370.1|2105303_2105672_-|hypothetical-protein
MKRYFVVSIMGDIRTSQVGRLSREYADMVRAADHRSLAGLPSPLPGVSILYLCNVWATDRAAAERMAALNRSQGSASRVLTSWPHDVSDWQQIKLNDDPGEFHFNPSTVADMARVIAGEVLA
>NC_017033.1|WP_014403369.1|2104374_2105307_-|toprim-domain-containing-protein
MSRYTGNLLADLVAAMRQHGITPTDPTRLRLDGVLCRFHDEGDRRDKRNGWAVVYVDTERPVAVFGSWRKGGQHTVVLGQSGRTMTADELERQRIAIEQARAARDAEQRHRQRRAAGSAFDEWQRASPASPRHPYLQRKGVTADGLREAGGKLLVPMHDAEGRLVNLQRIRGDGDKRFLPGGMVRGAYCLLGKVRDGLLIAEGVATAKSLHASTGQAVAVAFSAGNLLAVALVMRDRYPDLPITICADNDAKPDGSNPGVQAATQAACAIGAALAVPPIPGDFNDYATTLAAQGGTPESIEVKNHVQLHD
>NC_017033.1|WP_014403368.1|2102597_2104394_-|DUF927-domain-containing-protein
MSSSTIEAAESLPPLALVVSNAEPPAGPGFEVVERGKGRRHGVYFSDPHSDKPATWICAPLYVEAETRNADGGEWGRLLAFTDRDGKAHRWAMPCAMLATDGAELRAELLGQGLVIANSQHARKLLMDYIAQANPTQKARSVSRTGWHGEVFALPDRTFGPTAAEAVIFQTTAPGAAQVATGGTLEGWTDSVAKVCIGHSRLVLAVSMAFSAPCLDLAGMDGGGVHLRGSSSTGKTTAVLVASSVYGPPAYMRTWRQTDNALEGVATLHNDLMLPLDELGQLEPKDASRVAYMLANGQGKGRSDRSGRARPVATWRTAFLSSGEVSMGDLMVESGGRRRAGHEVRVIDVAADAGMGHGMFESVPVGSSASAVAEQLKRAAATHYGHPLLSFLEQLTADQRASRRRIEASMTDMLADLVPEDAGGQVRRVARRFALIGAAGELATAYGITGWPEGEAAQAIRICFRQWLADRGGPADAERAALLSQVKAFIEAHGDSRFEPEDHDNERRPVAHRVGFRRKLQVGEPGAEDRREQYLVMPEAFEELVRGFNPKAAAQTLIAAGWLQPGKDGKASQSVRVRGLSKGRFYVLEGAAVFSAEG
>NC_017033.1|WP_041270516.1|2101068_2102040_-|site-specific-integrase
MASITKRGTNWRAQVMVHGQRVSKSFSTKTEAQRWSLRQEAEGKQAPAQKMLVEDALKRLLDEHVNAGKSRGDIARVKRLMLDPIAEVRIPEVSKDHLIRYRDARLQEVSEASVRREMNELRGLFRRCREEWGWMTHNPFEGFAAPKSPESRKRRLTDDEIECVRQAFGVGYELRAESLANRVGLCFLFAIETAMRSGEIVGLTWNHVHLDKRYVHIPITKNGDKRDVPLSTFAAEILQALPRDGDQPCFGMNDAQRDAIWRKYRDRAAVEDLHFHDTRAEGIWRLSKKLDVLQLARVIGHRDIKSLLIYYRESATDMAAKLG
>NC_017033.1|WP_014403378.1|2111218_2112439_-|tyrosine-type-recombinase/integrase
MPLTDTAARKAAPRDKSYRLPDGGGMYLEVMPNGSRYWRLKYRFGGKEKRLALGVYPGISLADARKRREDARRLLADGIDPGAARKEAKQEATAEAGGAVTFEQVARQWLARQDVAEVTANKNQWLLEEYLFPSIGQRPIADITPRELLAALRETEDKGLLETARRSKIKAGQVFRYAIIEGLCEADPMASLRGALKTTRNRHHAAITDPVQIGGLMRAMDGFAGTFTVRCALLLSALLFVRPGELRKAEWAEMDLDGAMWRIPGEKMKMGAPHLVPLSEQALAILRDLHGLTGHARYVFSGLRTDSRPMSENTVNTALRALGYDKATMTAHGFRSMAATRLNEMGWNADAIERQLAHAESNKVRDAYTSQAQYLPERQKMMQAWADYLDSLKAGGTVVAFKSKAG
>NC_017033.1|WP_014403379.1|2112856_2113216_-|preprotein-translocase-subunit-SecG
MFAIFSVFYILIAASMIVLILMQRGAGAEAGSGFGGGASATVFGARGSSNFLTRATGVLATAFFLMSLGMGMYLSRHGAGQASDSSLMSAAPTAASVPAASQPAGNGAVPAATGSSATH
>NC_017033.1|WP_014403380.1|2113230_2113998_-|triose-phosphate-isomerase
MRKKLVAGNWKMHGSQALTRELCAATAAAKPQDVDVVVFPPSLYLREAVQVLAAGGAVGVGAQDVSIHAGEGAYTGEISAAMVADCGAGWAIVGHSERRADFRESDHDVGRKFSAARQAGLKPVLCVGETHADHVAGRTLEVIERQLAAVLDHNPIEAFVSAVIAYEPVWAIGSGLSATPEQAQQVHAFIRSQIRKKDANISPLTRLLYGGSVKAVNAAELFAQPDVDGGLVGGASLNAEEFASICQAAGRQDKR
>NC_017033.1|WP_014403382.1|2115452_2116391_-|isopenicillin-N-synthase-family-oxygenase
MKHVPTLDIRRFDTDREAFVAELGAAYREFGFCGIRGHGIDPALIDGAYQAFQALFALPDAVKRQYHLSGAGGARGYTPFKVETAKDSRHPDLKEFWHIGREIDRGHVYAERMPPNIWPPEVPALREYGYGLYQALDQLGRRVLQALALHIELPIDFFEDKVQFGNSILRPLHYPPLPEGEVPNVRAGAHEDINLITLLVGASAAGLEVLGRDGEWLPITTQGDAIVVNIGDMLQRLTNHVYPSTTHRVVNPPGEAGRQSRYSVPFFLHPNPDVVLDPLPQTITADNPNRYPESITAHDYLMQRLREIKLIA
>NC_017033.1|WP_014403383.1|2116387_2117773_-|phosphoglucosamine-mutase
MTSRKYFGTDGIRGLVGQWPISADFMLRLGRAAGIVLARHGGRQKPVVVIGKDTRVSGYMFESALEAGLVAAGVDVRLLGPMPTPAVAFLTRSLRADAGIVISASHNPHHDNGIKFFSAAGEKLSDALELEIEAEVDADFATVASEQLGKAVRIDDAVARYAEFCKATVAEDFSLRGLKLVLDCAHGATYQVAPKVFRELGADVITIGDHPDGFNINNGVGSTHPEALQRAVLDAGADLGIAFDGDGDRVQLVDRHGMLADGDDILYVLARHWQRLGQLHGPVVGTLMSNFGLQLALREEGIELLRAQVGDRYVLQQMKAHGSVLGGETSGHVLCLDRATTGDGIVAALAVLEALVGEGKDLAAARGGLTKLPQLMLNVRVEGAREALDSDIVQNACALVEAELAGRGRVVLRASGTEPLVRVTIEAADADEVERLAHRLAEAVQDAAAEHVSSLLTTDAP
>NC_017033.1|WP_052317993.1|2117817_2118702_-|dihydropteroate-synthase
MDCGGRVVVLDRPCVVGIVNVTPDSFSDGGRFDSLDKAVAHGLALAEAGAGMLDIGGESTRPGAPAVSLDEELSRVIPVIEALAARCSLPLAIDTHKPEVMRAAAAAGVGMINDIYALRREGALEAVADLGLPVCIMHMQGEPGTMQQAPDYSDVVGEVQRFLAERLLACEFAGIDKRKVLVDPGFGFGKSVEHNLQLLSHLQQFQDMAGGLYVGLSRKSVLGAVTGRAAPAQRAAASVAAALIAAQRGARWIRVHDVAETVDALAVWAAVAGHDRAAASVSTRPAAPVWPDDD
>NC_017033.1|WP_014403385.1|2118731_2119295_-|oligoribonuclease
MRSHNDDNLIWIDLEMTGLDTDNDSILEIATIVTDKELNILAEGPVFAISHELARLEAMDAWNVGQHSRSGLWQQVLDSTTGHAEAEQATLEFLREWLSSGASPMCGNSICQDRRFLHRQMPRLERFFHYRNLDVSTVKELARRWAPEVAAGIRKTSAHTALSDIRDSIDELKYYRSFMGVLGGQSL
>NC_017033.1|WP_014403386.1|2120061_2121516_+|exodeoxyribonuclease-I
MTEPTFFWHDYETFGADPRRDRPVQFAGIRTDMELNIIEEPVMFYGLPPKDMPPHPEACLITRITPQLAAREGIREAEFAARVQEQLGRPGTCGVGYNSLRFDDEVTRQLLYRNFFDPYAREWEHGNARWDLIDLVRMCEALRPDGIQWPSREDGAPSFKLEQLATANALEQAQAHDALSDVRALIGLAQLIRQRQPRLWDWYYQLRRKQQVQSLLDPIAMTPLVHISSRYPASRHCLAIIVPLAEHPSRPGEMIIYDLDHDPDDWLALDAQSIADRVFVARADLPEGIERVPLRTLRSNRAPALAPMSVLRPVDLERLQLNPDIQLAHLEKLRRAPDLVSKVRDIFGHASDFPPAGDPELALYDGFAARADKPLLVKVRTSPPEALAGLASAFKDPRYPELLFRYRARNWPETLSAEETARWRAFLQDRLSGRSPTVELSLAEYFQRIASLREERTAPADQLLLDQLQVWGESLGEDLSLPIA
>NC_017033.1|WP_014403387.1|2121536_2122223_+|DUF2461-domain-containing-protein
MATPYFSPASFQFLSRLERHNQREWFHQHKDEYERHLREPFQRLIVDLQVPLAAISPHFRADPRKVGGSLFRIHRDTRYAHDKDPYKTWQGARFFHERHRQIQAPSFYVQLQPGDCFAGAGIWSPEPPTLKSLREFIADNPAAWKRATHNVDFRQRFVFWGESLKRPPRGYDPDHELIEDLKRKHFAAGREFDESLACSAELLPWLIEQYQALAPMVDYLCAARELDF
>NC_017033.1|WP_014403388.1|2122517_2123819_-|MFS-transporter
MSAVGSPAVPHDLARNDAKTLILSALGGALEFYDFVVFVFFTKVLGQLFFPAGMSPWLAQFQVFGIFAAGYLARPLGGVAMAHFGDRLGRKRMFSLSVLLMALPTLCIGLLPDYARAGVVAPLLLLLLRVLQGVAIGGEMPGAWVFVAEHAPRRSVGFGLSSLTCGITAGILMGSLMAAWISHHFSNGDIHRYAWRIPFLLGGVFGLLSVWMRRWLSETPVFEAMRANRELSEGLPLKQVVVGHGRGIAISMLVTWLLTAAIVVLILMTPTLVQTAFHLPAAEAFTGSSLAAACLMVGTLVSGWFVDRLGRPLTMALFLVALIVMSKWLFLDLQAGGQHFLLLYALTGLSVGVVGVVPAVMVAAFPAAIRYSGIAFAYNLAYALSGAVTPPLIASLSKIYGPMAAANYVIGVAVLGLVTAVYLACSRRRDFER

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Crispr_ID: NC_017033_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017033_2

2525823-2526175

Orphan

Consensus_repeat	Method
GNNTGGGACAAGACCAAGGANGG	CRT

5 spacers

The CRISPR arrays of NC_017033_2

>merge|NC_017033|2|2525823-2526175|CRT
GGTTATGACAAGACCAAGGACGGTACGGTCTCGGCTTACGACAAGACCAAGGAAGGCAGCAAGAAGCTTTGGGACAAGACCAAGAGCGGAACCGAAAAGGCTTACGACAAGACCAAGGACGGTTCCGAAAAAGCCTGGGACAAGACCAAGGAAGGCACCACCAAGGCCTGGGACAAGACCAAGGAAAAGTCGACCAAAGCCTGGGACAAGACCAAGGAAAAGAGCCAGGAAATCTCCGACAAGAGCAAGAACGGCGGTGACACCGCCTGGGACAAGACCAAGGAAGGTACTACCAAGGCCTGGGACAAGACCAAGGAGGGTACCACCAAGGCTTGGGACAAAACCAAGGAAGG

>NC_017033|2|1|2525823-2526175|CRT
GGTTATGACAAGACCAAGGACGG	TACGGTCTCGGCTTACGACAAGACCAAGGAAGGCAGCAAGAAG
CTTTGGGACAAGACCAAGAGCGG	AACCGAAAAGGCTTACGACAAGACCAAGGACGGTTCCGAAAAA
GCCTGGGACAAGACCAAGGAAGG	CACCACCAAGGCCTGGGACAAGACCAAGGAAAAGTCGACCAAA
GCCTGGGACAAGACCAAGGAAAA	GAGCCAGGAAATCTCCGACAAGAGCAAGAACGGCGGTGACACC
GCCTGGGACAAGACCAAGGAAGG	TACTACCAAGGCCTGGGACAAGACCAAGGAGGGTACCACCAAG
GCTTGGGACAAAACCAAGGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_017033.1\|WP_014403747.1\|2535140_2537888_+\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
NC_017033.1\|WP_041270562.1\|2534745_2534952_-\|hypothetical-protein	unknown	unknown	unknown
NC_017033.1\|WP_014403733.1\|2511285_2513874_+\|UDP-forming-cellulose-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|236918
NC_017033.1\|WP_174269760.1\|2540408_2541365_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_017033.1\|WP_014403736.1\|2519832_2520867_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NC_017033.1\|WP_014403743.1\|2528150_2529530_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NC_017033.1\|WP_014403740.1\|2525042_2525435_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183165
NC_017033.1\|WP_014403734.1\|2513943_2516214_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	unknown	unknown	gnl\|CDD\|236851
NC_017033.1\|WP_014403732.1\|2510582_2511293_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368976
NC_017033.1\|WP_014403741.1\|2526414_2527044_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NC_017033.1\|WP_014403739.1\|2523397_2524894_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99735
NC_017033.1\|WP_014403748.1\|2537977_2540182_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227114
NC_017033.1\|WP_014403745.1\|2530946_2531984_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176103
NC_017033.1\|WP_014403738.1\|2521561_2522776_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_017033.1\|WP_014403731.1\|2510376_2510586_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371309
NC_017033.1\|WP_014403735.1\|2516273_2519807_+\|cellulose-biosynthesis-protein-BcsC	unknown	unknown	gnl\|CDD\|183140
NC_017033.1\|WP_014403744.1\|2529655_2530888_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NC_017033.1\|WP_014403746.1\|2532138_2534730_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NC_017033.1\|WP_014403737.1\|2520962_2521565_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_017033.1\|WP_014403742.1\|2527136_2528096_-\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316

Protein	Function_ID	Function_description	E-value
NC_017033.1\|WP_014403747.1\|2535140_2537888_+\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NC_017033.1\|WP_014403733.1\|2511285_2513874_+\|UDP-forming-cellulose-synthase-catalytic-subunit	gnl\|CDD\|236918	PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional.	0
NC_017033.1\|WP_174269760.1\|2540408_2541365_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.76029e-89
NC_017033.1\|WP_014403736.1\|2519832_2520867_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NC_017033.1\|WP_014403743.1\|2528150_2529530_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	3.98812e-116
NC_017033.1\|WP_014403740.1\|2525042_2525435_+\|hypothetical-protein	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	5.6053e-09
NC_017033.1\|WP_014403734.1\|2513943_2516214_+\|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB	gnl\|CDD\|236851	PRK11114, PRK11114, cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB.	0
NC_017033.1\|WP_014403732.1\|2510582_2511293_+\|hypothetical-protein	gnl\|CDD\|368976	pfam06564, CBP_BcsQ, Cellulose biosynthesis protein BcsQ. This is a family of bacterial proteins involved in cellulose biosynthesis. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)). A second component of the extracellular matrix of the multicellular morphotype (rdar) of Salmonella typhimurium and Escherichia coli is cellulose. The family does contain a P-loop sequence motif suggesting a nucleotide binding function, but this has not been confirmed.	2.5244e-52
NC_017033.1\|WP_014403741.1\|2526414_2527044_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	5.19416e-124
NC_017033.1\|WP_014403739.1\|2523397_2524894_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99735	cd00610, OAT_like, Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.	1.06619e-45
NC_017033.1\|WP_014403748.1\|2537977_2540182_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	0
NC_017033.1\|WP_014403745.1\|2530946_2531984_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176103	cd08411, PBP2_OxyR, The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily. OxyR senses hydrogen peroxide and is activated through the formation of an intramolecular disulfide bond. The OxyR activation induces the transcription of genes necessary for the bacterial defense against oxidative stress. The OxyR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The C-terminal domain also contains the redox-active cysteines that mediate the redox-dependent conformational switch. Thus, the interaction between the OxyR-tetramer and DNA is notably different between the oxidized and reduced forms. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.73815e-36
NC_017033.1\|WP_014403738.1\|2521561_2522776_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.74863e-49
NC_017033.1\|WP_014403731.1\|2510376_2510586_+\|hypothetical-protein	gnl\|CDD\|371309	pfam10945, CBP_BcsR, Cellulose biosynthesis protein BcsR. CBP_BcsR is a family of bacterial cellulose biosynthesis proteins. Cellulose is necessary for biofilm formation in bacteria. Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation).	7.08934e-18
NC_017033.1\|WP_014403735.1\|2516273_2519807_+\|cellulose-biosynthesis-protein-BcsC	gnl\|CDD\|183140	PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional.	0
NC_017033.1\|WP_014403744.1\|2529655_2530888_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NC_017033.1\|WP_014403746.1\|2532138_2534730_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NC_017033.1\|WP_014403737.1\|2520962_2521565_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.15855e-64
NC_017033.1\|WP_014403742.1\|2527136_2528096_-\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	6.05533e-165

>NC_017033.1|WP_014403740.1|2525042_2525435_+|hypothetical-protein
MFLRTSLAVAALAVAASSAFVAPVSAKTLTAQQQRMATCAKESTGKKGAEHRAFMSSCLKGKTAASSAFSTAEKAKDEISTTTGKTEAAVTGTGKSTDQRAKMTECNVQAKAKSLKGAERKSFMSSCLKG
>NC_017033.1|WP_014403739.1|2523397_2524894_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MSVIEQLQELRDFGGKALTWGLDDASIAHFAAGDPQLGLAIAAALETHRRLQTDDAEFLRLDEAEQIRQAQSGFVNFYPDDAINRYLPAAAQGPWIVTLKGAVLHDNGGYGMLGFGHNDPAILSALARPQVMANIMTPSVAQRHFAKALQQELGHRRGGSPYARLLCLNSGSEAVSLACRIADIHAKHLTDPDGRHAGRRIKRLAVKGAFHGRTDRPALYSDSSHAVYRQHLASYREQDSLLTVEPYDLEQLQAVFAEADRQGWFIEAMFLEPVMGEGDPGRAVTPEFYAAARQLTADHGSLLLVDSIQAGLRAHGVLSLVDYPGFETLPPPDFETFSKALNGGQYPLSILAVGEQAAGLYRKGVYGNTMTGNPRALEVAIATLGQLNDSVRQNIRERGEEVLQRLNQLKEELPGLITKVQGTGLLFSCELAEAYKCYGEDSIEEYMRSHGVGVIHGGTRSLRFTPHFRISSAEIGLVIDKLRHALLHGPRQTDTDRS
>NC_017033.1|WP_014403738.1|2521561_2522776_-|sensor-histidine-kinase
MTRSDAAMPKSGSIWRCWLTPAPGSDAAANMARGISPWVDLIHLLWSLWIVVVPWLNHDFSRAWWLSTSLSFPLFLVLFLASFLRPRTQVNRFSWGTLILSLLVAGWNSGASGTYFMFACMTLDADGGRWRGWRAFATQLLLMIGLFVLVCTRHHYPEVLLLWMSGAALVASIIVQVMKSMNRKADRLRMSESEVRRLAGLAERERIGRDLHDLLGHTLSTITLKLELSRRLSESDPERSARERDEAEIIAREALAEVRAAVTGIRATDLAAELASARLLLAAAGVALEHDVLPTGLPPAMERSVALVVREALTNIARHAAAARAKVSFRQDTDGLHVEVRDDGHGIRGMAGHGLSGMRERVEAHGGRLQLDTGPAGTRVISLWPFGHDPSGPAIGVGLQQAPA
>NC_017033.1|WP_014403737.1|2520962_2521565_-|response-regulator-transcription-factor
MIRVVLAEDQGMVRGALSALLNLEADIEVTATAIDGEAAWRELQHGRADVLVTDIEMPGLSGLELAQRVQRHALPIKVVIVTTFAREGFLRRALEAGVSGYLLKDAPAERLAEALRLVHRGGRAIDPQLALAAWSGGDPLTERERQVLRLVGEGMASGDIARRLNLSQGTVRNYLSEAIGKLGVGNRIEAWRLARQKGWL
>NC_017033.1|WP_014403736.1|2519832_2520867_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MDKSDFDFELPPGLIAQAPLAQRSASRLLWLNPDDGHIEDKVFRDLPTFCQPGDLLVFNNTKVLPARLHGHKPSGGAVEIMIERVCGTHEVIAQLRASKKPREGGEIVLADGSRATMQGREGSFFRLRFDTALDDLLPRVGKMPLPPYITRQADDSDDSRYQTVYAREPGAVAAPTAGLHFDQALLDQLSGQGIEFGYVTLHVGAGTFQPVREGRLEDHVMHREYLEVDTDLVERIAATRARGNRVIAVGTTVVRALESATVDGKLGAYAGETQIFIYPGYRITSIDGLVTNFHLPQSTLLMLISALAGRDRIMQAYQHAVAAGYRFFSYGDAMLILPGSAAEV
>NC_017033.1|WP_014403735.1|2516273_2519807_+|cellulose-biosynthesis-protein-BcsC
MSRLLILLASGLTAHASLAASLSDQQRIWLLSQIRLGMATARPELASDAWQRLQMLAPEDPAILQQGVLLAMSQHRGDDARRYFEQLQHLTRDPELLEPARQALALDQPQVQAALHRARLFETAGQNAQAIASFRSIFGDRPPTLDLAVEYWSLLTRDPAQREQAIARLQVLNDDYPGYAPLRWALIGPLFAAGHPQQAIMVLHQLASTPGNREVASEREFAYLKSLPVDASTIRLWQSFLATYPGVSAWEQARQILDRQQHLAGDPAWRDGQRGMTLSQNGRDQALAQSLLQRALQHYPDDPKLLGYYALSLFQSARYDQAAIYFKKATMLEDDPYFMTKWRTLHQDTLYWQELRHADQALSRQQLDAATRLYTLAHQQRPDNINARLGMADVAIARRQWPRAIELLNAVRTLHPGDDGALRRLLNIHAEMGSSSLHDFLATLPAPVAARYRPREMALRRDELSRRAGEARQHGDMALAIRLLQQAHAATPDDPWLSLQLARTLQDQGRNTEAEQVFARVSVDSPIELRYARALYLDGSGRDPQALILLQTMHGARMTAEMQQLEHQIRIRQLTRRVWSELQARHFGIASDLVKQLPDTLDTWRLQAELARQQGHHDTQLAIDRRLLAQWPQRIDLRLDEIDALLQLQRTGEARSRLEPLAAASLAPSASDRRRMARDWSQLGEPRRAAAQMRAALADEAHPSALDLRDLARWERKDDPARALQDDARALQQLRLLPATITTPADPAQLTRATRARDSDDWLRQSLRSDIAEYYQRTDPVLTLDEGLNSRSNGQAGATDLRNQTQMLDYAFPWVTGRAFVRLEHQQLDAGSFRLNSGGRYLDDFGSCLFAGLDSLGRYQQLPGCSNRQHQHADGVLLAGGWQSADGRVQADIGHSPFGYAVGNWLGGISWRGDLGWLGWRLTGSRRPMDNSLISLAGAIDPRTGQRWGGVTANGATLGLSVDQGGSDGAWASLGAHLMLGRNVPSNFRQTAMAGWYHRFVERTHLQIRSGLSLMYWGYRHNQDYFSLGNGDYYSPSRYTSIGLPLTIAWRSADWSALIDASASWSWAGLDPSRRFPIERLIRTPLAALQAQASPATIDTAQWLNAGGRSQGPGARLHLALERRLGAHWVLGTSFTVQHSQDYAPSYGRLYIRYSFHPWEGDLPMPVTPLTPYDNFR
>NC_017033.1|WP_014403734.1|2513943_2516214_+|cellulose-biosynthesis-cyclic-di-GMP-binding-regulatory-protein-BcsB
MLGLAITSACPLQATPLPLKKPAAPVAAASTQATPVVTDIDWQQTQSFAQLGQNGDLMLSGLAPDGTINFMLRRDRVGTQASLKLDLTPSPALLPGLSQLQIFLNDQLAEVIPFRTEDLGRHILRQITLDPKLLANFNHLRFHLIGHYTNSCEYPAHTSLWLALGQNSELQLAGSSLDMRNDLAFLPLPFFDPEGGRRLNLPVVLPDQPGALQIQASAVAGSYFAQHLGWWRSSHLQAMYGRLPAEGNAVVLMDNAQRQSLFPDLPPVDTPTIEMLDRPDRLPGKILLLTGRDDAQVLIAAQTLASGNVQFRGSQVRIDSFQLPPRRQPYDAPTWVQTRHPVHFGELVTAPYQLQASGTESPEVNLSLNLPPDLFVWGDAGIPMKLHTRVSPPPAHDQPSWLEVKVNNQIMATLGVPDSDHTSFMSRLRIPLVNRLGELDRSVPIPALEIGSRNLMQFRFDINAQPSGAGGNPCVPVSLPLIQAEVLKDSSLDLSGYQHYIGLPNLSVFAQSGFPFSRQADLADTIAVMPPHPSEADTTLLLSAVAAITSETGYPALRLQVSTDFDAASRLDADLLVIGAGTGHLEGKMPVELQLDGNHSRLRGGQPGSAIRAEGQAAQGAMSSLGDAGTSSITASGAIAGVVQMQAPHHPQRSIVVLEASPGSGQSLLQGVLDDPTQRTELRGSATILRDSGASPQFTGVHYYIGHLSWWALLWFHFSNHPLVLGSLAALLTLMVAGLLWRVLRWQARRRLEGHD
>NC_017033.1|WP_014403733.1|2511285_2513874_+|UDP-forming-cellulose-synthase-catalytic-subunit
MADPRRWPCRRNQAFRLAGHGRLAACCLTVVTAMAWLLFPLESDAWKSFVKDYRRWYPQLDQAGSSRPGRLLRILLQTPALLLLQPRSRHPGQMLRKQLRRGRHRLRLLASLPTQWIRRWRRRIAHSQRYHDARGYLTKRYHALPAKIQQRLAWLALAAAAGLAAICISQPLSYPAQAVFALTLLLTAQVIYRIPGRFAGLLIAVLSIVVSSRYLWWRYTSTLHWNRSLDLMFGIGLLLAETYSFVVLLMGHVQAIWPLQRKPVSLPDSLESWPSVDVLIPTYNEDLDMVRNTIFAAQGIDWPADKLKIWVLDDGDRDTYRDFCAEIGVGYLRRAEHKHAKAGNLNHALTQTDGELLAIFDADHVPCRSFLQMTVGWLLRDPKMALVQTPHHFFSADPFERNLDEFRSSPNEGDLFYGLLQDGNDTWDATFFCGSCAVIRRSAIMSIGGFATETVTEDAHTSLRMHRHGWRSAYLRLPQAAGIATGSLAAHINQRIRWARGMTQIFRLDNPMLGQGLSLFQRLCYLNAMMHFLAGLPRLVFLTAPLAFLIFHIEIIYAPAVAITLFVLPHMAHSAIANARQKSRVRAPFRGEIYETVLSWYTARATTSALINPYRGNFNVTAKNELQQRNWIDWRIAAPYFLLAGLNLCGIGFAVWRIRFGPQNEIHTTWLAAAWTVYNLIVLGASIRVAMEIRQQRQRHRIATNQPAAIQFEDGRIYACELRDYAGGGVGIRLEGMVDAPVGSRVQIILDRAGDPSSFPAMIRRHAGQYLGMEMQLSHVQMVEFIRCTFGRADAWINWHDSRPKRHFIGEVFDFVLMGLGAYPRLLCYLPAPVRRLGRHSVHLVRWLLSFMPRRPLAASPT
>NC_017033.1|WP_014403732.1|2510582_2511293_+|hypothetical-protein
MIRAGLRGMRGGAGCTSLTAGLAYSLSLLGKSVLCVDMCASNQLRLHFNHPLQAVEGWSRRDGTDVRSACFELSSKLAVLPHGGHRDADITAQGPGPELEALTAGFDWVLFDLGSSSPAPARPDLSLDIELRVLPLDVAAVMRLDRADLQADAPPLLINRYNPTRPLQRDLVTLLDSFSDLATVSQKVHEDPAFEEALASKMPVGYYASQSMACQDLTGLATWCLSHAAHGSAPRG
>NC_017033.1|WP_014403731.1|2510376_2510586_+|hypothetical-protein
MSQTPKSAIEAAVHRTDDIARLKQHLHASGMVYHDFAREQRQTSVVHRWPLLGELAARLTDTPSVKEQP
>NC_017033.1|WP_014403741.1|2526414_2527044_+|uracil-phosphoribosyltransferase
MKIVEVAHPLIQHKIGLMRKAGISTKDFRELASEVASLLTYEATKDLETVETTIDGWAGPIKVRRIAGKKVTIVPILRAGLGMLPGVLEMIPAARVSVVGLQRDEETLEAVPYYEKLTGQMGERTALIVDPMLATAGTLIATVDMLKAAGSKCIKALFLVAAPEGLKRVEQVHPDVEIYTASIDERLNEQGYILPGLGDAGDKIFGTKA
>NC_017033.1|WP_014403742.1|2527136_2528096_-|prolyl-aminopeptidase
MTTARGLEALYPAIEPFDQNHLAVSSLHSLYYEQSGNPQGKPVVFLHGGPGGGSHPRCRQFFDPAIYRIVLFDQRGCGRSTPHAELRDNTTWDLVADIERLREHLGIEQWQVFGGSWGSTLALAYAQTHPLRVSELVLRGIFMLRRSELEWFYQKGADSLFPDAWESYLAAIPEVERGDLMSAYHRRLTGTDRAQQLAAAKAWSVWEGSTSHLHQDPGHMAATGEDEFALAFARIECHYFVHGGFFDHDDQLLRHVDRIRHIPATIVQGRYDVVCPIRSAWDLHRAWPEADLRIVADAGHSAFEPGIAEQLVAATDRYA
>NC_017033.1|WP_014403743.1|2528150_2529530_-|FAD-binding-oxidoreductase
MSDLREALLRDLPDIRLLTAPAELEHYGRDWTRRWNPAPLAIALPADTSEVQQLVRWAARHQVCVVPSGGRTGLSGGAVAAHGELVISLDRMRQVLAFDAAARLLTVQPGLPLQAVHEAAAGHGLIYPVDFAARGSCSIGGNIATNAGGIRVIRYGNTREWVAGLKVVTAKGELLDLNRGLVKNSSGYDLRHLMIGSEGTLGIVVEATLRLTDPPPPSQVMLLALPDMAALMQVFELFQHRLPLQAFEFFTDVALRHVLAHGASRALDGDYPYYAVCEFDAATEAAEEVALQAFEKAMEQGWLLDGVLAQSEAQAAALWRLREGITESLAPYQPYKNDVSVRISAVPAFLADMQDLLGREYPHIEVVWFGHIGDGNLHINVLRPADMAAEDFIGQCERVTKLLAATLQRHGGSISAEHGIGLVKRDYLGSTRSAAEIALMQGIRRAFDPDGLLNPGKLF
>NC_017033.1|WP_014403744.1|2529655_2530888_+|phosphoglycerate-dehydrogenase
MKTSFPKEDIRVLLLEGVSQSAVDTFRNAGYTQIEYHKKALPEAELIESISQAHIIGIRSRSQLTAEVFQHAKRLIAVGCFCIGTNQVDLDAAERLGIPVFNAPYSNTRSVAELVLAEAIMLMRGIPQKNAECHRGGWSKSAAGSYEVRGKTLGVVGYGHIGTQISVLAEALGMQVLFHDIEAKLSLGNAQPTASLDELLQRSDIVTLHVPETPATRMMIQAPQLAAMKPGAILLNASRGTVIDIDALADSLRSGHLGGAAIDVFPVEPKGNGDAFVSPLIGMDNVILTPHIGGSTLEAQDNIGIEVAAKLVRYSDNGSTLSAVNFPEVSLPEHADSRRLLHIHQNVPGVLSRINELFSAGNLNINAQFLQTRPALGYVVIDVAADEATTQELRDRLSAITGTLRTRVLY
>NC_017033.1|WP_014403745.1|2530946_2531984_-|LysR-family-transcriptional-regulator
MISTALSVVSLRDLALVQAVHRHGSFNSAARSMHISPSGLSHQVQKVEQALGVPLFERGGRKIGVTGAGKGLLKQIDALLLGADQLQQAARAGQVAFGGELKLGLPISLGPYLLPHLIDPFPQRFPGARLSISEGKPRGLLRRLHEGELDAVLAPPALGAVPSGIAVQEIFFEPWELMLGAGHPLAGQASISLDQLDPAEAVLMEESHAEDLLDCPQGCQQVQDVSLESLAGLISLHGGYALVPALARQRLESFPNVAISRLKGRAAGRRILLYWRDANPWTEDLAHLTAMLKSMAAAMPVLRELSPSKRPARTSESACGTAASPDGLEGGQAAPLAMVAAGRHA
>NC_017033.1|WP_014403746.1|2532138_2534730_-|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLTSYRQHAAERAALGIPPLPLSATQTAELVELLKSPPAGEEAFLLDLITHRVPAGVDDAAKVKASYLAAVALGSEKCPLITPAKATELLGTMLGGYNIHPLIELLDHAELAPIAADALKKTLLVFDAFHDVKEKADQGNAPAKAVLQSWADAEWFTSRPEVPESLTVTVFKVPGETNTDDLSPAPDATTRPDIPLHALAMLKNQREGAPFKPEEDGKRGPIAFLESLKEKGHPVAYVGDVVGTGSSRKSATNSVLWWTGEDIPFIPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVSAMDMGDVIELRPYEGKALKDGKVIAEFQVKSEVLFDEVRAGGRIPLIIGRGLTAKAREALGLAPSTLFRLPHDPADTGKGYTLAQKMVGRACGLPEGKGIRAGTYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVKTHHTLPAFISNRGGISLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKLQPGVTLRDLVNAIPLYAIKQGLLTVAKQGKKNIFSGRILEIEGLPDLKVEQAFELSDASAERSAAGCTVRLNKEPIIEYLNSNIVLLKWMIAQGYQDARSLARRVEKMESWLADPQLLEPDADAEYAAVIEIDLADVHEPIVACPNDPDDVKTLSDVAGAKIDEVFIGSCMTNIGHFRAAAKLLEGKRDIPTRLWVAPPTKMDASELTNEGVYGTFGAAGARMEMPGCSLCMGNQAQVHEGATVFSTSTRNFPNRLGRNTFVYLGSAELAAICSRLGRIPTKQEYMEDIGVINANGDKIYRYLNFDKISDYTDMAKGVAA
>NC_017033.1|WP_041270562.1|2534745_2534952_-|hypothetical-protein
MQIFEWTRKQSFGLREFPADWHNPWLKTLSLRASGTAFPRVVAELILIQKVSRSAGITEFRKQWFSAY
>NC_017033.1|WP_014403747.1|2535140_2537888_+|aconitate-hydratase-AcnA
MKDSFSTRDTLDLNGQSYQIASLARLGQHFDLRRLPYSLKILLENLLRHEDGINVTAREIEQVAQWQPEREPDTEIAFMPARVVLQDFTGVPCVVDLAAMRDAVVKLGGSAERINPLVPVELVIDHSVQVDAYGNAQALERNVEIEFQRNRERYSFLRWGQKAFDNFKVVPPRTGIVHQVNLEHLARVVFTTEVDGELWAYPDTVFGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQASSMLIPQVVGFKLDGQLAEGVTATDLVLTVTQMLRKLGVVGKFVEFFGPGLAHLALADRATIGNMAPEYGATCGIFPIDQEALNYLRLSGRDEAQIALVEAYAKAQQLWHDANTPHPQYTTVLELDLDQVRPSLAGPKRPQDKVLLDQVQASYRQAVAGLTQGRPPRHVDDDFAAEGGASAIGNDANDIVDGGVRVQKDGQSFSLKDGAVVIAAITSCTNTSNPAVMLAAGLLAKKAAARGLQSRPWVKTSIGPGSKVVTDYLQQTGLLTELEKLGFYIAGYGCTTCIGNSGPLPDAISKGIAKGDLAVASVLSGNRNFEGRVHPEVKMNYLASPPLVVAYALAGTLDIDLSTDPLGKDPAGDPVFLRDIWPDNREISDIMAHAIHPDMFRKNYADVFKGDDRWSAIASPDGSVYRWDPSTYIKHPPYFDGMTAQPAAFEDIHDARVLSLFGDSITTDHISPAGAIKKDSPAGRFLVSHGVEPGDFNSYGSRRGNDDIMVRGTFANIRIRNRMLDNVEGGYTLHIPSGDTLAIYDAAMRYREEDTPLVVIAGKEYGTGSSRDWAAKGTLLLGVKAVIAESFERIHRSNLVGMGVLPLQFEPGQSAASLGLTGRETFTITGLEGGESKSASVKAVREDGSELDFRLKVLLLTPKEREFFRHGGILQYVLRQLAEKKPA
>NC_017033.1|WP_014403748.1|2537977_2540182_-|TonB-dependent-siderophore-receptor
MRHRFCARQCASWLLLSMASTVPVLAQTATADQDTVAGQGGHKSVIRSKPASKTLEQVKVEGQTSSTYSSDDTNAATRLPLSLLDTPQSVSIMSRQRMTDQQLNSVRAVLDNTTGVQSNAYDSERVVYWSRGFQIENMAYDGVPVASGLNVSSVDGSLDTSVYDRVEVVRGATGLLSGSGSPSAMVNFVRKQADSKTAQADISVSYGSWATKRLTADGSTPLNKSGTVRGRLVVTHEDGNTYQTRARNNKNVLYGVVDWDISPKTLLSVGYEYQRSMPRGITWGSFPVLYADGGQIPLPRNFNPAARWTYWNNMTQSAFIDLKHEFANGWQIHGEVDHRKTNADSVLFYSYGFPDRTTGEGITPYAYKSYQSGRQNMFDLYASGPVWAFGREHELVGGIYTSDFNTDSYQFPTDTDLGTIDFNHWNGNYPYPDFSSQKQMVTLTHIKQEGAYIAARIQLADPLKLVTGARYTRWSNDTNDATYGVYNETKGKVVPYAGLIYNILPDLTAFASYTKIFDPQTNRGANGAYLEPMVGTSSEVGIKSRNFNGALNTSLTFFNTRESNVAQAIPGEYLADGITQVYEPLNGTRSRGFEFETSGSITDNWNATLGISHYNIKAPGYGNVHPSLPRATIRSFTTYTLPGAWSGLSVGGGVNWQNATNIPVADVDNLTRTIHQRSVMLLGLMARYAFNNRMSLQINGDNLLHKKYFIADDSSDFAFGQPASFMVTFNYKFF
>NC_017033.1|WP_174269760.1|2540408_2541365_-|LysR-family-transcriptional-regulator
MQSYQKQVTIRNTVSFRLTMIQLEDMRLLTQTLDSGSFTAAAERAGVSKQYISRRIMALEAQLGTQLLIRTTRHLRPTDLGRAYADQARAILQQVAELEQSITGASQSPRGHLRVTAPMSFGTLHLSGLLARFLGAHPEVSIEIELNDRVVDLHGEGYDLAIRIGALADSSLIARRIAPMEMVACCSPSYLRYRDAPKVPSDLQQHDCLLYGHGSLVEWHFGARGHEKIRLQGRLRANNGELVRDAAVQGMGIAYLPTFIVDPELASGQLVTILDDYRLASSAVYAVYPQHRQSSPLLSAFCDFLSQELSIRSGKSMS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1053147 : 1094910

uncultured_Caudovirales_phage(31.43%)

transposase,tail,portal,plate,terminase,capsid,integrase,head

attL 1053019:1053075|attR 1099372:1099428

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1053019:1053075	attL	NA	NA	NA	NA
WP_014402425.1\|1053147_1054167_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.3e-106	58.8
WP_014402426.1\|1054168_1054387_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_014402427.1\|1054386_1054635_-	hypothetical protein	NA	NA	NA	NA
WP_041270370.1\|1054636_1054864_-	hypothetical protein	NA	NA	NA	NA
WP_014402428.1\|1054856_1055138_-	hypothetical protein	NA	NA	NA	NA
WP_014402429.1\|1055134_1055392_-	hypothetical protein	NA	NA	NA	NA
WP_014402430.1\|1055388_1056072_-	HNH endonuclease	NA	NA	NA	NA
WP_014402431.1\|1056068_1056419_-	hypothetical protein	NA	NA	NA	NA
WP_169314776.1\|1056714_1057197_-	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	2.0e-36	61.0
WP_041270371.1\|1057193_1057496_-	hypothetical protein	NA	NA	NA	NA
WP_156803335.1\|1057581_1057803_-	hypothetical protein	NA	NA	NA	NA
WP_169314748.1\|1058141_1059326_+	diguanylate cyclase	G3MA91	Bacillus_virus	3.0e-09	25.1
WP_041270372.1\|1059392_1059671_+	hypothetical protein	NA	NA	NA	NA
WP_041270373.1\|1060094_1060526_-	hypothetical protein	NA	NA	NA	NA
WP_014402438.1\|1061138_1061330_+	hypothetical protein	NA	NA	NA	NA
WP_083841220.1\|1061395_1061506_+	hypothetical protein	NA	NA	NA	NA
WP_014402439.1\|1061474_1061768_+	BrnA antitoxin family protein	A0A2H4J5Y5	uncultured_Caudovirales_phage	8.3e-06	49.0
WP_041270374.1\|1061875_1062043_-\|transposase	transposase	NA	NA	NA	NA
WP_156803484.1\|1061960_1062221_+\|transposase	transposase	A0A1B0Z042	Pseudomonas_phage	2.0e-11	62.3
WP_156803336.1\|1062408_1062666_+	hypothetical protein	NA	NA	NA	NA
WP_014402440.1\|1062671_1063235_+	hypothetical protein	NA	NA	NA	NA
WP_156803337.1\|1063218_1063665_+	hypothetical protein	NA	NA	NA	NA
WP_041270375.1\|1063879_1064323_-	serine hydrolase	NA	NA	NA	NA
WP_014402442.1\|1064739_1065435_-	helix-turn-helix transcriptional regulator	E7C9R0	Salmonella_phage	1.2e-18	30.4
WP_083841123.1\|1065506_1065731_+	hypothetical protein	NA	NA	NA	NA
WP_014402443.1\|1065730_1065943_+	hypothetical protein	NA	NA	NA	NA
WP_041270378.1\|1066042_1066615_-	hypothetical protein	A0A127KNL4	Pseudomonas_phage	4.1e-17	36.6
WP_052317791.1\|1066613_1067204_+	hypothetical protein	NA	NA	NA	NA
WP_014402446.1\|1067200_1068190_+	YdaU family protein	A0A2H4FS76	Methylophilaceae_phage	1.7e-13	35.0
WP_014402447.1\|1068176_1068839_+	hypothetical protein	Q3HQZ7	Burkholderia_phage	2.5e-42	43.6
WP_014402448.1\|1068835_1069036_+	hypothetical protein	NA	NA	NA	NA
WP_014402449.1\|1069032_1069539_+	hypothetical protein	NA	NA	NA	NA
WP_014402450.1\|1069535_1069925_+	Ref family protein	NA	NA	NA	NA
WP_083841124.1\|1070086_1070419_+	DUF1364 domain-containing protein	K7P7Y2	Enterobacteria_phage	1.1e-14	47.1
WP_014402452.1\|1070421_1070799_+	VRR-NUC domain-containing protein	A0A0N7MKQ1	Acinetobacter_phage	7.2e-18	40.3
WP_156803485.1\|1071040_1071658_+	hypothetical protein	C8CLH7	Xylella_phage	6.7e-21	39.1
WP_014402454.1\|1071771_1072077_-	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.2e-10	43.5
WP_014402455.1\|1072057_1072372_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	3.6e-23	57.0
WP_014402456.1\|1072432_1072939_+	Rha family transcriptional regulator	A0A192Y918	Salmonella_phage	2.9e-14	48.2
WP_014402457.1\|1073002_1073221_+	hypothetical protein	NA	NA	NA	NA
WP_014402458.1\|1073204_1073681_+	lysozyme	A0A0U4JP67	Pseudomonas_phage	7.9e-22	42.2
WP_156803338.1\|1073680_1074163_+	hypothetical protein	NA	NA	NA	NA
WP_156803339.1\|1074219_1074501_+	hypothetical protein	NA	NA	NA	NA
WP_014402461.1\|1074714_1075245_+\|terminase	terminase small subunit	R9TRM5	Vibrio_phage	2.6e-21	46.3
WP_014402462.1\|1075219_1077124_+\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	1.6e-219	57.5
WP_014402463.1\|1077124_1077361_+	hypothetical protein	NA	NA	NA	NA
WP_014402464.1\|1077360_1078962_+\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	3.1e-102	43.1
WP_156803486.1\|1078964_1080191_+	S49 family peptidase	A0A219YB02	Aeromonas_phage	7.0e-54	46.5
WP_014402466.1\|1080190_1080607_+\|head	head decoration protein	NA	NA	NA	NA
WP_014402467.1\|1080671_1081673_+\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	8.5e-66	40.8
WP_041270856.1\|1081669_1081981_+	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	4.7e-15	42.3
WP_014402469.1\|1081977_1082574_+	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	6.8e-47	50.7
WP_014402470.1\|1082570_1083152_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	2.0e-22	35.1
WP_014402471.1\|1083126_1083714_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	8.6e-26	50.0
WP_014402472.1\|1083724_1084081_+	hypothetical protein	NA	NA	NA	NA
WP_041270858.1\|1084080_1084407_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.1e-29	57.4
WP_014402474.1\|1084403_1085288_+\|plate	baseplate J/gp47 family protein	D5LGZ3	Escherichia_phage	5.7e-58	45.1
WP_014402475.1\|1085280_1085826_+\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.2e-45	48.6
WP_014402476.1\|1085825_1087793_+	hypothetical protein	V9IQX0	Stenotrophomonas_phage	4.0e-35	46.5
WP_014402477.1\|1087793_1088279_+	hypothetical protein	NA	NA	NA	NA
WP_014402478.1\|1088348_1089569_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	1.9e-123	59.3
WP_014402479.1\|1089578_1090082_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	3.5e-60	67.5
WP_014402480.1\|1090091_1090415_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_014402481.1\|1090521_1092840_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	3.5e-62	32.5
WP_014402482.1\|1092843_1093686_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	5.4e-74	52.5
WP_014402483.1\|1093660_1093867_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.9e-13	55.2
WP_014402484.1\|1093857_1094910_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	5.7e-113	57.4
1099372:1099428	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1573593 : 1611389

uncultured_Caudovirales_phage(26.92%)

tail,plate,terminase,capsid,protease,integrase

attL 1589516:1589533|attR 1608820:1608837

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014402901.1\|1573593_1573941_+	DUF1364 domain-containing protein	A0A2H4JIC4	uncultured_Caudovirales_phage	3.1e-23	48.2
WP_014402902.1\|1573937_1574111_+	hypothetical protein	NA	NA	NA	NA
WP_014402903.1\|1574110_1574446_+	hypothetical protein	I6WLM9	Burkholderia_virus	2.1e-21	52.9
WP_014402904.1\|1574448_1575066_+	hypothetical protein	C8CLH7	Xylella_phage	2.4e-18	35.6
WP_041270447.1\|1575158_1575422_-	hypothetical protein	NA	NA	NA	NA
WP_014402905.1\|1575503_1576007_+	hypothetical protein	A0A2H4JFP9	uncultured_Caudovirales_phage	1.2e-31	51.4
WP_014402906.1\|1575997_1576297_+	hypothetical protein	NA	NA	NA	NA
WP_014402907.1\|1576293_1576560_+	hypothetical protein	NA	NA	NA	NA
WP_041270449.1\|1576556_1576907_+	hypothetical protein	NA	NA	NA	NA
WP_156803373.1\|1576959_1577097_+	hypothetical protein	NA	NA	NA	NA
WP_014402909.1\|1577110_1577446_+	hypothetical protein	NA	NA	NA	NA
WP_014402910.1\|1577457_1577721_+	Head fiber protein	NA	NA	NA	NA
WP_014402911.1\|1577733_1578405_+	hypothetical protein	A0A077KBY7	Edwardsiella_phage	4.5e-39	50.3
WP_041270451.1\|1578355_1579906_+\|terminase	phage terminase large subunit	A0A291LBL3	Klebsiella_phage	1.9e-117	47.4
WP_174269768.1\|1579947_1581441_+	DUF1073 domain-containing protein	A0A0P0I486	Acinetobacter_phage	7.0e-149	58.2
WP_052317978.1\|1581367_1582051_+\|capsid	minor capsid protein	A9YWZ8	Burkholderia_phage	1.6e-52	48.0
WP_156803374.1\|1582188_1582368_+	hypothetical protein	NA	NA	NA	NA
WP_014402915.1\|1582428_1583739_+	DUF2213 domain-containing protein	A0A0P0IRE1	Acinetobacter_phage	4.4e-62	41.4
WP_014402916.1\|1583748_1584243_+	hypothetical protein	A0A0P0I8F3	Acinetobacter_phage	4.5e-36	52.5
WP_014402917.1\|1584320_1585328_+	DUF2184 domain-containing protein	A0A0N7IRF2	Acinetobacter_phage	7.1e-121	65.3
WP_014402918.1\|1585338_1585563_+	hypothetical protein	NA	NA	NA	NA
WP_014402919.1\|1585540_1585936_+	DUF4054 domain-containing protein	A9YX25	Burkholderia_phage	3.5e-31	52.0
WP_014402920.1\|1585932_1586475_+	hypothetical protein	A0A0M4S631	Salmonella_phage	1.7e-36	49.2
WP_014402921.1\|1586474_1586858_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	2.2e-22	49.2
WP_014402922.1\|1586850_1587405_+	hypothetical protein	A9YX29	Burkholderia_phage	4.1e-38	48.9
WP_014402923.1\|1587408_1588893_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	2.6e-119	50.5
WP_014402924.1\|1588901_1589342_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	1.2e-37	52.7
WP_014402925.1\|1589352_1589742_+	hypothetical protein	NA	NA	NA	NA
1589516:1589533	attL	NA	NA	NA	NA
WP_014402926.1\|1589935_1592188_+\|tail	phage tail protein	A0A2H4J9N7	uncultured_Caudovirales_phage	9.1e-76	38.8
WP_041270932.1\|1592226_1592805_+	hypothetical protein	A0A0P0IKS1	Acinetobacter_phage	1.9e-14	38.8
WP_014402928.1\|1592808_1593123_+	hypothetical protein	NA	NA	NA	NA
WP_014402929.1\|1593119_1594067_+	hypothetical protein	A9YX04	Burkholderia_phage	8.6e-52	42.3
WP_083841227.1\|1594117_1594726_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	4.2e-36	41.7
WP_014402931.1\|1594728_1595076_+	hypothetical protein	A9YX11	Burkholderia_phage	1.4e-31	64.1
WP_083841228.1\|1595159_1596251_+\|plate	baseplate J/gp47 family protein	A0A2H4J915	uncultured_Caudovirales_phage	5.8e-76	47.1
WP_014402933.1\|1596247_1596832_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	3.4e-43	45.5
WP_014402934.1\|1596898_1598707_+	hypothetical protein	A9YX14	Burkholderia_phage	2.7e-06	35.6
WP_014402935.1\|1598707_1599193_+	hypothetical protein	NA	NA	NA	NA
WP_014402937.1\|1599509_1600481_-\|integrase	site-specific integrase	A0A1B1P9F9	Acinetobacter_phage	1.1e-65	42.6
WP_014402938.1\|1601230_1603057_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_014402939.1\|1603040_1604036_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_014402940.1\|1604032_1604227_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_014402941.1\|1604231_1605011_+	thiazole synthase	NA	NA	NA	NA
WP_014402942.1\|1605007_1605622_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_083841138.1\|1605654_1606524_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_014402944.1\|1606658_1607282_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_014402946.1\|1607934_1608399_+	DUF3574 domain-containing protein	NA	NA	NA	NA
WP_014402947.1\|1608440_1610048_+	hypothetical protein	NA	NA	NA	NA
1608820:1608837	attR	NA	NA	NA	NA
WP_014402948.1\|1610142_1610673_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_014402949.1\|1610738_1611389_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

1899601 : 1953087

uncultured_Caudovirales_phage(20.0%)

integrase,plate,protease

attL 1907096:1907113|attR 1957510:1957527

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014403197.1\|1899601_1900150_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_014403198.1\|1900149_1902012_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_014403199.1\|1902008_1903199_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_014403200.1\|1903214_1905731_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	6.7e-19	34.7
WP_014403201.1\|1905758_1908356_+	DUF2169 domain-containing protein	NA	NA	NA	NA
1907096:1907113	attL	NA	NA	NA	NA
WP_014403202.1\|1908352_1909411_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_014403203.1\|1909454_1910114_+	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_014403204.1\|1910126_1910516_+	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_014403205.1\|1910529_1911042_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_014403206.1\|1911042_1912419_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_014403207.1\|1912477_1913758_+	type VI secretion system protein TssL	NA	NA	NA	NA
WP_041270496.1\|1913767_1917358_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_014403209.1\|1917401_1918274_+	hypothetical protein	NA	NA	NA	NA
WP_014403210.1\|1918283_1918802_-	transcription elongation factor GreB	NA	NA	NA	NA
WP_014403211.1\|1918798_1919347_-	DUF1523 family protein	NA	NA	NA	NA
WP_052317872.1\|1919680_1921198_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_014403213.1\|1921397_1922246_-	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_014403214.1\|1922407_1923331_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_014403215.1\|1923398_1924487_+	chorismate synthase	A0A291AU41	Pandoravirus	2.2e-75	42.0
WP_014403216.1\|1924604_1925657_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_052317873.1\|1925662_1926289_+	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_014403218.1\|1926322_1927594_+	hypothetical protein	NA	NA	NA	NA
WP_014403219.1\|1927590_1927929_+	hypothetical protein	NA	NA	NA	NA
WP_169314777.1\|1927978_1930327_+	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_052317988.1\|1930378_1931176_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_014403222.1\|1931126_1932245_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_156803506.1\|1932313_1933270_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_014403224.1\|1933266_1934016_+	ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	4.6e-16	27.1
WP_014403225.1\|1934607_1935138_+	cupin domain-containing protein	NA	NA	NA	NA
WP_014403226.1\|1935139_1936045_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_041271000.1\|1936191_1936989_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	1.7e-08	25.3
WP_041270498.1\|1936981_1938667_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
WP_014403229.1\|1938659_1939487_+	aspartate dehydrogenase	NA	NA	NA	NA
WP_014403230.1\|1939506_1940997_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_014403231.1\|1941009_1941978_+	VOC family protein	NA	NA	NA	NA
WP_014403232.1\|1942061_1943486_+	MFS transporter	NA	NA	NA	NA
WP_014403233.1\|1943661_1944261_+	nitroreductase family protein	NA	NA	NA	NA
WP_014403234.1\|1944482_1944872_-	VOC family protein	NA	NA	NA	NA
WP_014403235.1\|1945111_1946515_+	coniferyl aldehyde dehydrogenase	NA	NA	NA	NA
WP_014403236.1\|1946815_1947673_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-52	40.6
WP_014403237.1\|1948327_1949029_+	hypothetical protein	NA	NA	NA	NA
WP_014403238.1\|1949340_1950657_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_169314755.1\|1950909_1951080_+	hypothetical protein	NA	NA	NA	NA
WP_156803507.1\|1951080_1951326_+	hypothetical protein	NA	NA	NA	NA
WP_169314756.1\|1951632_1953087_-\|protease	aspartyl protease family protein	NA	NA	NA	NA
1957510:1957527	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3053821 : 3061567

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014404174.1\|3053821_3054544_-	ABC transporter ATP-binding protein	A7J887	Paramecium_bursaria_Chlorella_virus	1.9e-06	24.4
WP_014404175.1\|3054547_3055372_-	ABC transporter permease	NA	NA	NA	NA
WP_014404176.1\|3055359_3056526_-	cystathionine gamma-synthase	NA	NA	NA	NA
WP_014404177.1\|3056744_3057794_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	7.7e-78	45.3
WP_014404178.1\|3057790_3058678_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	4.8e-97	59.9
WP_014404179.1\|3058674_3059232_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.5e-48	51.7
WP_014404180.1\|3059228_3060146_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.5e-21	31.2
WP_014404181.1\|3060154_3061567_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.3e-56	31.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017033

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection