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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_021171 Bacillus sp. 1NLA3E, complete sequence 8 crisprs DEDDh,DinG,RT,csa3,cas14j,cas14k,cas3,PrimPol 3 4 3 0

Results visualization

1. NC_021171
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021171_1 546062-546158 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021171_2 1258560-1258635 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021171_3 1743341-1743414 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021171_4 2189080-2189589 Orphan NA
8 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021171_5 2701110-2701220 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021171_6 2712752-2712846 TypeV NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021171_7 2771384-2771977 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_021171_8 3332153-3332229 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_021171_7 7.5|2771702|18|NC_021171|CRT 2771702-2771719 18 NC_021171.1 2771378-2771395 0 1.0
NC_021171_7 7.7|2771810|18|NC_021171|CRT 2771810-2771827 18 NC_021171.1 2771978-2771995 1 0.944
NC_021171_8 8.1|3332179|25|NC_021171|CRISPRCasFinder 3332179-3332203 25 NC_021171.1 3190885-3190909 2 0.92

1. spacer 7.5|2771702|18|NC_021171|CRT matches to position: 2771378-2771395, mismatch: 0, identity: 1.0

tcgctctactcgtcgctc	CRISPR spacer
tcgctctactcgtcgctc	Protospacer
******************

2. spacer 7.7|2771810|18|NC_021171|CRT matches to position: 2771978-2771995, mismatch: 1, identity: 0.944

ccggtctactcgtcgctc	CRISPR spacer
ccggtctacccgtcgctc	Protospacer
*********.********

3. spacer 8.1|3332179|25|NC_021171|CRISPRCasFinder matches to position: 3190885-3190909, mismatch: 2, identity: 0.92

gggaaccaaagattcgctatgatga	CRISPR spacer
gggaatcaaagagtcgctatgatga	Protospacer
*****.****** ************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_021171_3 3.1|1743364|28|NC_021171|CRISPRCasFinder 1743364-1743391 28 MN657122 Psychrobacter sp. strain ANT_H56B plasmid pA56BH4, complete sequence 2727-2754 5 0.821
NC_021171_4 4.5|2189422|30|NC_021171|CRT 2189422-2189451 30 MH588544 Caulobacter phage CcrBL10, complete genome 89975-90004 6 0.8
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 NZ_CP049794 Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence 1213335-1213364 6 0.8
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 NZ_CP049792 Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence 994811-994840 6 0.8
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 NZ_CP049790 Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence 1458514-1458543 6 0.8
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 NZ_CP016915 Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence 2055174-2055203 6 0.8
NC_021171_7 7.2|2771462|30|NC_021171|CRT 2771462-2771491 30 NZ_AP014706 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence 379897-379926 6 0.8
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 JX681814 Burkholderia phage phiX216, complete genome 15430-15459 8 0.733
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 CP008753 Burkholderia phage BEK, complete genome 9336-9365 8 0.733
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 NC_009236 Burkholderia phage phiE12-2 chromosome, complete genome 27820-27849 8 0.733
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 CP000623 Burkholderia phage phiE202, complete genome 26816-26845 8 0.733
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 DQ087285 Burkholderia pseudomallei phage phi52237, complete genome 28726-28755 8 0.733
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 CP000624 Burkholderia phage phiE12-2, complete genome 27820-27849 8 0.733
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 NC_007145 Burkholderia prophage phi52237, complete genome 28726-28755 8 0.733
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 NC_009234 Burkholderia phage phiE202 chromosome, complete genome 26816-26845 8 0.733
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 NC_019408 Caulobacter phage CcrRogue, complete genome 91045-91074 8 0.733
NC_021171_4 4.7|2189506|30|NC_021171|CRT 2189506-2189535 30 NC_019408 Caulobacter phage CcrRogue, complete genome 91240-91269 8 0.733
NC_021171_4 4.5|2189422|30|NC_021171|CRT 2189422-2189451 30 NZ_CP049244 Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence 1204878-1204907 9 0.7

1. spacer 3.1|1743364|28|NC_021171|CRISPRCasFinder matches to MN657122 (Psychrobacter sp. strain ANT_H56B plasmid pA56BH4, complete sequence) position: , mismatch: 5, identity: 0.821

taagaataaacgctattttgagaatatg	CRISPR spacer
ttatcataagcgctattatgagaatatg	Protospacer
* *  ****.******* **********

2. spacer 4.5|2189422|30|NC_021171|CRT matches to MH588544 (Caulobacter phage CcrBL10, complete genome) position: , mismatch: 6, identity: 0.8

----gagccgtcgttcaaaccgccgttcgagccg	CRISPR spacer
tgaagag----cgttcgacccgccgttcgagccg	Protospacer
    ***    *****.* ***************

3. spacer 4.7|2189506|30|NC_021171|CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcactgtcgttccagccgtcgtgcaggccg	Protospacer
. .*.******* ********* *******

4. spacer 4.7|2189506|30|NC_021171|CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcactgtcgttccagccgtcgtgcaggccg	Protospacer
. .*.******* ********* *******

5. spacer 4.7|2189506|30|NC_021171|CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcactgtcgttccagccgtcgtgcaggccg	Protospacer
. .*.******* ********* *******

6. spacer 4.7|2189506|30|NC_021171|CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcactgtcgttccagccgtcgtgcaggccg	Protospacer
. .*.******* ********* *******

7. spacer 7.2|2771462|30|NC_021171|CRT matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 6, identity: 0.8

ccgatctactcgtcggtctactcaccgatc	CRISPR spacer
acgatctactcttcggcctactcaccctgc	Protospacer
 ********** ****.*********   *

8. spacer 4.7|2189506|30|NC_021171|CRT matches to JX681814 (Burkholderia phage phiX216, complete genome) position: , mismatch: 8, identity: 0.733

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcatcgttgttcgtgccgtcgttcaggcaa	Protospacer
. ..***.***** ************** .

9. spacer 4.7|2189506|30|NC_021171|CRT matches to CP008753 (Burkholderia phage BEK, complete genome) position: , mismatch: 8, identity: 0.733

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcatcgttgttcgtgccgtcgttcaggcaa	Protospacer
. ..***.***** ************** .

10. spacer 4.7|2189506|30|NC_021171|CRT matches to NC_009236 (Burkholderia phage phiE12-2 chromosome, complete genome) position: , mismatch: 8, identity: 0.733

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcatcgttgttcgtgccgtcgttcaggcaa	Protospacer
. ..***.***** ************** .

11. spacer 4.7|2189506|30|NC_021171|CRT matches to CP000623 (Burkholderia phage phiE202, complete genome) position: , mismatch: 8, identity: 0.733

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcatcgttgttcgtgccgtcgttcaggcaa	Protospacer
. ..***.***** ************** .

12. spacer 4.7|2189506|30|NC_021171|CRT matches to DQ087285 (Burkholderia pseudomallei phage phi52237, complete genome) position: , mismatch: 8, identity: 0.733

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcatcgttgttcgtgccgtcgttcaggcaa	Protospacer
. ..***.***** ************** .

13. spacer 4.7|2189506|30|NC_021171|CRT matches to CP000624 (Burkholderia phage phiE12-2, complete genome) position: , mismatch: 8, identity: 0.733

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcatcgttgttcgtgccgtcgttcaggcaa	Protospacer
. ..***.***** ************** .

14. spacer 4.7|2189506|30|NC_021171|CRT matches to NC_007145 (Burkholderia prophage phi52237, complete genome) position: , mismatch: 8, identity: 0.733

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcatcgttgttcgtgccgtcgttcaggcaa	Protospacer
. ..***.***** ************** .

15. spacer 4.7|2189506|30|NC_021171|CRT matches to NC_009234 (Burkholderia phage phiE202 chromosome, complete genome) position: , mismatch: 8, identity: 0.733

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
gcatcgttgttcgtgccgtcgttcaggcaa	Protospacer
. ..***.***** ************** .

16. spacer 4.7|2189506|30|NC_021171|CRT matches to NC_019408 (Caulobacter phage CcrRogue, complete genome) position: , mismatch: 8, identity: 0.733

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
tgaagagcgttcgagccgtcgttcgagccg	Protospacer
 *.  . *****************..****

17. spacer 4.7|2189506|30|NC_021171|CRT matches to NC_019408 (Caulobacter phage CcrRogue, complete genome) position: , mismatch: 8, identity: 0.733

aggccgtcgttcgagccgtcgttcaggccg	CRISPR spacer
cgaagagcgttcgagccgtcgttcgagccg	Protospacer
 *.  . *****************..****

18. spacer 4.5|2189422|30|NC_021171|CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

gagccgtcgttcaaaccgccgttcgagccg	CRISPR spacer
ggcggttcgttcaaacagccgttcgagaaa	Protospacer
*.    ********** **********  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 221385 : 272511 67 Bacillus_phage(26.67%) tRNA,protease,portal,integrase,capsid,terminase attL 225635:225653|attR 268672:268690
DBSCAN-SWA_2 346610 : 356572 9 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_3 3583108 : 3644239 59 uncultured_Mediterranean_phage(14.29%) transposase,protease,coat,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage