CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_019903	Desulfitobacterium dichloroeliminans LMG P-21439, complete sequence	1 crisprs	RT,csa3,DEDDh,cas3,DinG	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_019903_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_019903_1

1465904-1466012

Orphan

Consensus_repeat	Method
GGGCAATATCAGTGGAACCAATACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_019903_1

>merge|NC_019903|1|1465904-1466012|CRISPRCasFinder
GGGCAATATCAGTGGAACCAATACTAATGTGGGTGGAGTAGTGGGGTATGTTAAAAGTGGTACAGTGGAGGGCTGTATCAGTCTGGGTAATATCAGTGGAACCAATACT

>NC_019903|1|1|1465904-1466012|CRISPRCasFinder
GGGCAATATCAGTGGAACCAATACT	AATGTGGGTGGAGTAGTGGGGTATGTTAAAAGTGGTACAGTGGAGGGCTGTATCAGTCT
GGGTAATATCAGTGGAACCAATACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_019903.1\|WP_015261924.1\|1455730_1456279_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_019903.1\|WP_015261929.1\|1462072_1462693_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_019903.1\|WP_015261922.1\|1452886_1454200_-\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NC_019903.1\|WP_015261938.1\|1473732_1474650_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_019903.1\|WP_015261935.1\|1471595_1472378_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378937
NC_019903.1\|WP_051015671.1\|1460307_1460493_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|366361
NC_019903.1\|WP_015261937.1\|1472994_1473363_+\|DUF488-family-protein	unknown	unknown	gnl\|CDD\|225730
NC_019903.1\|WP_015261936.1\|1472431_1472851_+\|DUF1801-domain-containing-protein	unknown	unknown	gnl\|CDD\|378058
NC_019903.1\|WP_015261926.1\|1459011_1460082_-\|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|227091
NC_019903.1\|WP_015261923.1\|1454250_1455333_-\|NAD/NADP-octopine/nopaline-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|376763
NC_019903.1\|WP_083879848.1\|1475130_1475376_+\|DUF2200-family-protein	unknown	unknown	gnl\|CDD\|337575
NC_019903.1\|WP_015261921.1\|1452096_1452591_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224248
NC_019903.1\|WP_015261927.1\|1460545_1460803_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NC_019903.1\|WP_015261925.1\|1457449_1458592_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226458
NC_019903.1\|WP_015261931.1\|1468668_1469271_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_019903.1\|WP_015261928.1\|1460795_1461131_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NC_019903.1\|WP_015261932.1\|1469367_1469748_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NC_019903.1\|WP_015261933.1\|1470056_1470662_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_019903.1\|WP_051015672.1\|1474694_1475123_+\|DUF1801-domain-containing-protein	unknown	unknown	gnl\|CDD\|227933
NC_019903.1\|WP_015261934.1\|1470654_1471599_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054

Protein	Function_ID	Function_description	E-value
NC_019903.1\|WP_015261924.1\|1455730_1456279_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.30843e-14
NC_019903.1\|WP_015261929.1\|1462072_1462693_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.51041e-14
NC_019903.1\|WP_015261922.1\|1452886_1454200_-\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	6.19601e-56
NC_019903.1\|WP_015261938.1\|1473732_1474650_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.38812e-62
NC_019903.1\|WP_015261935.1\|1471595_1472378_+\|ABC-transporter-permease	gnl\|CDD\|378937	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.30274e-11
NC_019903.1\|WP_051015671.1\|1460307_1460493_+\|VOC-family-protein	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	4.52132e-09
NC_019903.1\|WP_015261937.1\|1472994_1473363_+\|DUF488-family-protein	gnl\|CDD\|225730	COG3189, COG3189, Uncharacterized conserved protein [Function unknown].	4.99946e-39
NC_019903.1\|WP_015261936.1\|1472431_1472851_+\|DUF1801-domain-containing-protein	gnl\|CDD\|378058	pfam08818, DUF1801, Domain of unknown function (DU1801). This large family of bacterial proteins is uncharacterized. They contain a presumed domain about 110 amino acids in length.	5.13698e-17
NC_019903.1\|WP_015261926.1\|1459011_1460082_-\|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	gnl\|CDD\|227091	COG4748, COG4748, Uncharacterized conserved protein [Function unknown].	1.62593e-131
NC_019903.1\|WP_015261923.1\|1454250_1455333_-\|NAD/NADP-octopine/nopaline-dehydrogenase-family-protein	gnl\|CDD\|376763	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain. This group of enzymes act on the CH-NH substrate bond using NAD(+) or NADP(+) as an acceptor. The Pfam family consists mainly of octopine and nopaline dehydrogenases from Ti plasmids.	1.91467e-44
NC_019903.1\|WP_083879848.1\|1475130_1475376_+\|DUF2200-family-protein	gnl\|CDD\|337575	pfam09966, DUF2200, Uncharacterized protein conserved in bacteria (DUF2200). This domain, found in various hypothetical bacterial proteins, has no known function.	2.23849e-54
NC_019903.1\|WP_015261921.1\|1452096_1452591_+\|transcriptional-regulator	gnl\|CDD\|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	4.09364e-14
NC_019903.1\|WP_015261927.1\|1460545_1460803_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	1.18236e-07
NC_019903.1\|WP_015261925.1\|1457449_1458592_+\|hypothetical-protein	gnl\|CDD\|226458	COG3949, COG3949, Uncharacterized membrane protein [Function unknown].	2.32073e-18
NC_019903.1\|WP_015261931.1\|1468668_1469271_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.79314e-23
NC_019903.1\|WP_015261928.1\|1460795_1461131_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	7.843e-17
NC_019903.1\|WP_015261932.1\|1469367_1469748_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	1.93611e-37
NC_019903.1\|WP_015261933.1\|1470056_1470662_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.52287e-12
NC_019903.1\|WP_051015672.1\|1474694_1475123_+\|DUF1801-domain-containing-protein	gnl\|CDD\|227933	COG5646, COG5646, Uncharacterized conserved protein [Function unknown].	9.14751e-29
NC_019903.1\|WP_015261934.1\|1470654_1471599_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	8.86409e-85

>NC_019903.1|WP_015261929.1|1462072_1462693_-|TetR/AcrR-family-transcriptional-regulator
MKENKTNKRKIQGAETKKKLYEIAANLFAQHDYADVSVEDITDAAGITKGAFYVHFGSKDALIAELIAEQAARADIDYKNFVNTLPSDIPTSVAILALTEKIADVLIHSIGHENMKKVYQLLLEGAVDSDSVKGYNRELYALFSSIIAKGINQGEFKNTLSPEALSQHFVMTIRGACYEWCIRFPAYDLKDQAVEHCRLLIEGILA
>NC_019903.1|WP_015261928.1|1460795_1461131_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MNKILYSPEALNDIDEIWAYINNELQNSAAAQKIVSDTLDTIEKLRDFSELGPPLSSITEFESDYGFLVCGKYIVFYRVMGLDVHIDRVLYGRRNYMSILFGTLHNDDDSE
>NC_019903.1|WP_015261927.1|1460545_1460803_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MPKIKPISDLRNYNEVLRDVSVGGPVFLTRNGRGRYALVDIADYEKTQATIKLMSELTKGRKSGEEKGWLLHEDVKAHFAGKIYE
>NC_019903.1|WP_051015671.1|1460307_1460493_+|VOC-family-protein
MKMTDGRGFYSIGMDVEDLTSTLAELKSKGIKITKGPLPTTAGSLAFIEDPNGVRICLDCC
>NC_019903.1|WP_015261926.1|1459011_1460082_-|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein
MDFIDQLKQFAQRVQKLKDQISTEEATKTSLILPFFQLLGYDIFDPTEFVPEFTADVGIKKGEKVDYAIFQNENPTILIEAKWCGESLDKHGSQLFRYFGTTKAKFGILTNGIIYNFYTDLEEPNKMDEKPFMEINLLDIKEGLIPELKKFHKTTLDVDAVFNTASELKYSRLIKSLLMRQLQDPDEHFINYILGEIYEGKRTKAAIDKFKDVVKRSYNQFLNETMNDRIKAAIGQTESKPLEATIANDQTDFDNQVPESKIVTTLEEIEYFYAIKSVLSETVEPSRIFYRDTESYLGILLDDNKLKWICRVYLGSINKSIALPDEKKKQFKIPISSVDDIYKVAPQLQESVKRLL
>NC_019903.1|WP_015261925.1|1457449_1458592_+|hypothetical-protein
MEDTGNKTMRVGALMSFAGALMAYLIGSGTASGQESMQYFSSWGSVSGALIVAIVNFTIMFCTFMAYTYAGRHGATDLLSVCEFYVGKTVGKLFTAFAWIFNACALFFMISGFGNTLNQQWNLPLWIGYAIAVVLAVGTASLGLKGIVNIIGKVGPVIVAFLFLLGIISAFKYFPHIPEGIKLIQSGEVTVLQAGANPLFAGISFGGCSILLVAAYMSSIGRELGEYKKKYTAIICGIGAAAISVTVLILGLVHLGNVADSSTSAIPNLLIANQVFGAASGIFGTIFAIIILLSIYSTFCPILWTCVSTFIKDEESAKYKIACVLAGVVVFIVDLFIPYATLVNIIMTYAGYTGGIVFAVLTIRWIMVRIEDKKDAKQTL
>NC_019903.1|WP_015261924.1|1455730_1456279_-|helix-turn-helix-transcriptional-regulator
MNDFSAFGEKLKAIRDSRNLNLSNVSELTGISKAMLSKIERGESVPTITTVWKIANGLKVTLNSLAGEADSSYIIKDISNTTPLIDEGGLFKLYNIFPFSPLDGIQVFYGVFKAGYHYEPPMFIHESSGKEYCIVFKGELDVVIGSKTYHLEEGCGIDFDSQEEHGYINGGKEDAIVCFLLI
>NC_019903.1|WP_015261923.1|1454250_1455333_-|NAD/NADP-octopine/nopaline-dehydrogenase-family-protein
MKKIAVLGTGNIAQTLSVDFKAKGHEVRLFAPTHLISRIQKIVDTHEIECVGAFETRQKIDVVTSDIDEAIKGADYICICVPGNRHEEYAKILKGHTMVDQIVITFNGCMASLIYKNVWGDDKTCPIFVESTIPPFSTRRIEPGKVRMYDRHLAPIAFFPASASEKYFDQIREDIYEFPGVYADILECGLSLVNPTVHPGPCLVNLSNIEKPDFTFFLYEHGFQPSGLKIDVLLNKERLAIGKAFGYQIHALEDFAGVDKIDSWEALYAMGHGSHALTSIAGPNDINYRYLTEDIPIALVCWASIADQLGIDTPIMDAVITLTGVAHDTNWFENGRSATRLGLAGKSVAEIKNYVKAGSY
>NC_019903.1|WP_015261922.1|1452886_1454200_-|serine-dehydratase-subunit-alpha-family-protein
MSMSIFRELLDKEASPALGCTEPMMFALAGAITRKHATGTVKRVDMVGCGLMVTGVQAVGIPNTGGKTGAYLSAAVGIINGDADACKEVLHNIRPEDVVAAEELVKNAEFTLDMDNSTGKQVYFKLTLTTDQHVATVIFEDEHHTWTYLEVDNKVVVDNRKPAGEMLIPADGVDWNEFTIENIYNWCKTADISEFGRAREAVAMNTALAKDGIENPRGLQTARVLMQNIESGFVAGDELTHVLIWATAGADARMGGSDYPAMVSTASGNQGAMVVMGPWASAEYRKCSEEEGYRAVAFALLLNTYLKYLSREFVYMPPTCSCAATSAPAAAAGVAFIHGLNPQQINDMLCTSMIHMAGVVCDGAKPSCAFRMFTSLFGCIEAMMMAEKGIRASNVEGFVHDDLKVTVENLYRLQHDVLHNKVDSILWDIVKEQKVIH
>NC_019903.1|WP_015261921.1|1452096_1452591_+|transcriptional-regulator
MFKINQYIVYNSMGVYKIVDIRTEELITNEKIQYYVLEPAFKDNMTIKIPVGNDKVLMRGVISKEDAVSVIEAMPKTETVWISNNKARTDSFMKALRSNECGQLVELIKLLHEEKVERTSLGKKLWKKDEDIMKVAERNLYEEFAIALKISPAEVLPFIREHVS
>NC_019903.1|WP_015261931.1|1468668_1469271_-|class-I-SAM-dependent-methyltransferase
MNHIHHHNPLDQKLLNKIAFLDSRQREQLIPPEALISQMPIQKNHTLLDVGAGSGFFTIPMAESTSGKVYAMDPDKRMLSVIQDKAKEKGLANIELIQDYIESLSIPNSSVDFVMASLILHEVSSLTKALTNIFEILKPGGHLLCLEYEKDDLIIEGPPMSIRIGSEELEKALSSIGFEIVKKTKINDAIYTVLAIKKEQ
>NC_019903.1|WP_015261932.1|1469367_1469748_-|Rrf2-family-transcriptional-regulator
MKYTKATNYALHIMAYFVKQEGKDNLSLQPLASHMNISPTYLSKILTQLVKADLIQSTPGVNGGYSLRKPKTDISFYDVIQAIEGSGALFTCEMDENRGCHIEKVMRDAEEKMVNHLKEKYIIDIV
>NC_019903.1|WP_015261933.1|1470056_1470662_+|TetR/AcrR-family-transcriptional-regulator
MPTAFNENEIKFIKLKLIESAQECLSKYGVRKTTVDQITEMSGISKGSFYKFYPSKEILFFTVLENYQKSIIEEVNIQFSQMDGVTPERFTEAIYGLFQNVRQSFMMNIIEKQEFEYLIRKLPEELIIEHHSFDDLIAKNMFKNISIKKDIDIGVATTSLRAIFMTMLYVSEIGEKDFDKALKLLIRGLAQQILEGGSKDV
>NC_019903.1|WP_015261934.1|1470654_1471599_+|ABC-transporter-ATP-binding-protein
MCEAINTINLTKVYDNAHAVSNLNISVKKGEILGFLGLNGAGKTTTIRMLLGMVSPTSGQCYLQGKKVSARDASLWSEVGYIVETPYSYPELTVRENLEIVRGLRGVEDKTCVEWIINKLQLDGYASKTVKHLSLGNAQRLGIAKAIIHKPKILILDEPTNGLDPEGIIEVRDLLHDLAKNSGVTILVSSHKLDEIAKVATNIAIIHKGRLIKEVDGYGLARELKKSLILNGRDRPAMVSILLKAGYKVEMKDKNKSENSPVLCIEDEEVIGNPEQMVTLLVNKGYPPNLLKVEKEDLETYFIRVIKEAGGMIG
>NC_019903.1|WP_015261935.1|1471595_1472378_+|ABC-transporter-permease
MREIVTSLLVETKKFINSKVPLITLLAMLMVPFMGGFFMYILKDPDFAKEMGIISAKAQIMGTADWPSYLSLLSQAVSIGGILVFGFVTSWIFGREYSDRTIKDLLALPISRNIIVLSKFIVVFLWCSLLSVFIFMIGMLVGNSVDIPGWSPSIVSQGLTIFVICSLLTILLSTPVAFFASFGRGYLSPLGFMIFTLVIAQIVASTGYGHLFPWSIPAIVSQSAGGFNIKLEYISVIIVLLTSFGGLIGTLLWWRFADQN
>NC_019903.1|WP_015261936.1|1472431_1472851_+|DUF1801-domain-containing-protein
MYEAKTKVNDNSVSEYIEKVENPKKREDAYRLLDVFSETTGLEAKMWGDSMIGFGSYHYKYASGHEGDAFLVGFSPRKAKISLYLDLWDRESEILLNELGKHTKGKSCVYVNKLSDIDTEILKKLITLSIKLVREKYPE
>NC_019903.1|WP_015261937.1|1472994_1473363_+|DUF488-family-protein
MALQIKRVYDSFQESDGMRLLVDRLWPRGITKENAHLDGWVKELAPSHQLRIWFGHRAENFEKFAMLYQEELDATTEAQAAARQVILQSKENKVTLLYGAKDPQVNHAIILKEYLEAKVLSL
>NC_019903.1|WP_015261938.1|1473732_1474650_+|RluA-family-pseudouridine-synthase
MTQDEDNKKSKTIANAEFVVTESSDLFDFLTLKLIHQSRNNIKSLLIHKQVTVDGGVVTQHDFPLKEKQRVGIVRSVIRGQKENEQLQIIYEDTDLIVINKPAGLLAIADHKNGLSAYHLLTDYVRRTNPKARIFIVHRLDRDTSGVLMFAKNEKLKRALQDNWGSLVSLRGYVAMVEGRLREKSGRIHSWLKETKTLLVYSSQKAGGGLEAITNYQVVDETPNYSLLNIQLETGRKNQIRVHMKELGHSVVGDTKYGAKTNPLKRLGLHAHKLELRHPFSNQLLFFETEVPENFKTLAAKGNSR
>NC_019903.1|WP_051015672.1|1474694_1475123_+|DUF1801-domain-containing-protein
MWKCPKCSRVFKSMDQGHFCGKPNNIDEYIAAQQEDLRPLLQSIRETIRAAAPEATEKISWQMPTFWQGENLIHFAAFKKHIGLYPGGEATSHFGERLAGYKTSKGAIQLPLGKPIDYELITDIVRWRVMEGGAQRAHQIRG
>NC_019903.1|WP_083879848.1|1475130_1475376_+|DUF2200-family-protein
MCWLTGYNDSSLETQIAKNNDYETFFKEAPQINPNATKITGVICGHRVEEIEDPLMQKIRWLDKLVDELAKGKPMEKIFRS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1251372 : 1262835

Synechococcus_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015261725.1\|1251372_1255218_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	3.4e-38	24.3
WP_015261726.1\|1255252_1255744_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.7e-25	45.9
WP_015261727.1\|1255907_1257203_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	5.3e-20	34.1
WP_015261728.1\|1257273_1257990_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	8.8e-41	40.2
WP_015261729.1\|1258101_1259520_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.1e-57	34.9
WP_015261730.1\|1259614_1260634_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F0L1	Synechococcus_phage	5.0e-74	47.1
WP_015261731.1\|1260633_1261236_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	5.7e-25	38.2
WP_041219306.1\|1261272_1262835_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	9.4e-80	52.3

DBSCAN-SWA_2

2611633 : 2652571

Bacillus_phage(25.0%)

bacteriocin,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015262964.1\|2611633_2612518_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_015262965.1\|2612504_2613479_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
WP_015262966.1\|2613468_2613846_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_015262967.1\|2613869_2616689_-	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	3.9e-23	25.6
WP_015262968.1\|2616732_2617029_-	L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA
WP_015262969.1\|2617025_2617292_-	YlxR family protein	NA	NA	NA	NA
WP_015262970.1\|2617301_2618750_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_015262971.1\|2618811_2619270_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_015262972.1\|2619543_2620365_-	TIGR03915 family putative DNA repair protein	NA	NA	NA	NA
WP_015262973.1\|2620343_2621651_-	putative DNA modification/repair radical SAM protein	NA	NA	NA	NA
WP_015262974.1\|2621859_2623587_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_172635940.1\|2623586_2624660_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_015262976.1\|2624684_2625749_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_015262977.1\|2625854_2626997_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_015262978.1\|2627104_2628202_-	sporulation integral membrane protein YtvI	NA	NA	NA	NA
WP_015262979.1\|2628206_2628989_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_015262980.1\|2628999_2629770_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	5.6e-25	46.7
WP_015262981.1\|2629850_2630408_-	ribosome recycling factor	NA	NA	NA	NA
WP_015262982.1\|2630407_2631130_-	UMP kinase	NA	NA	NA	NA
WP_015262983.1\|2631225_2631879_-	translation elongation factor Ts	NA	NA	NA	NA
WP_015262984.1\|2632039_2632777_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_015262985.1\|2632931_2633375_-	hypothetical protein	NA	NA	NA	NA
WP_015262986.1\|2633407_2634196_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_015262987.1\|2634277_2635654_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	4.9e-40	28.5
WP_172635941.1\|2635665_2636202_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_015262989.1\|2636295_2637192_-	tyrosine recombinase XerC	A0A0K2CP59	Brevibacillus_phage	3.4e-34	32.9
WP_015262990.1\|2637236_2638550_-\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_015262991.1\|2638551_2640642_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	1.4e-107	37.9
WP_041219955.1\|2640786_2641950_-	DNA-protecting protein DprA	S6BFL3	Thermus_phage	5.1e-30	41.3
WP_015262993.1\|2642192_2642750_-	hypothetical protein	NA	NA	NA	NA
WP_015262994.1\|2643113_2643716_-	DUF3786 domain-containing protein	NA	NA	NA	NA
WP_015262995.1\|2643847_2644678_-	TIM barrel protein	NA	NA	NA	NA
WP_015262996.1\|2644890_2645070_+	small, acid-soluble spore protein, alpha/beta type	NA	NA	NA	NA
WP_015262997.1\|2645153_2645585_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_015262998.1\|2645888_2646383_+	CarD family transcriptional regulator	NA	NA	NA	NA
WP_041219471.1\|2646534_2649384_-\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	W8CYL7	Bacillus_phage	3.1e-36	25.4
WP_015263000.1\|2649422_2651600_-\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	1.5e-30	25.5
WP_015263001.1\|2651632_2652571_-\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA

DBSCAN-SWA_3

3205715 : 3233555

Tupanvirus(22.22%)

transposase,integrase

attL 3228556:3228589|attR 3233614:3233647

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015263514.1\|3205715_3206972_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.7e-31	26.3
WP_015263515.1\|3207618_3209196_-	LysM peptidoglycan-binding domain-containing protein	A0A1V0DZX0	Clostridioides_phage	6.3e-07	55.8
WP_015263516.1\|3209398_3210403_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_015263517.1\|3210929_3212270_+	Ig-like domain-containing protein	A0A288TYF3	Enterococcus_phage	7.0e-15	40.9
WP_015263518.1\|3212395_3212629_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015263519.1\|3212806_3213922_+	alanine dehydrogenase	NA	NA	NA	NA
WP_015263520.1\|3214036_3214789_-	Fic family protein	NA	NA	NA	NA
WP_015263521.1\|3214988_3215981_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	4.2e-49	34.0
WP_041220019.1\|3216336_3216576_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_041220020.1\|3216590_3216881_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_015263524.1\|3216971_3217688_-	SWIM zinc finger family protein	NA	NA	NA	NA
WP_015263525.1\|3217684_3220360_-	DEAD/DEAH box helicase	A0A0N7D8L3	Dasychira_pudibunda_nucleopolyhedrovirus	1.1e-35	27.4
WP_015263526.1\|3220783_3222079_+	ATP-binding protein	NA	NA	NA	NA
WP_041220021.1\|3222489_3223344_+	DUF3102 domain-containing protein	NA	NA	NA	NA
WP_015263528.1\|3223582_3224596_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.6e-78	45.2
WP_015263529.1\|3224617_3224830_-	hypothetical protein	NA	NA	NA	NA
WP_015263530.1\|3224833_3225295_-	VanZ family protein	NA	NA	NA	NA
WP_015263531.1\|3225312_3226305_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	4.0e-52	36.3
WP_015263532.1\|3226427_3226853_-	hypothetical protein	NA	NA	NA	NA
3228556:3228589	attL	NA	NA	NA	NA
WP_015263533.1\|3228704_3229640_+\|integrase	tyrosine-type recombinase/integrase	A0A1J1J900	Escherichia_phage	2.7e-05	23.2
WP_015263534.1\|3229626_3230604_+\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	7.9e-08	24.4
WP_051015683.1\|3230606_3231290_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_015263535.1\|3231327_3232974_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_083879903.1\|3233186_3233555_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
3233614:3233647	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage