CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_018017	Desulfitobacterium dehalogenans ATCC 51507, complete sequence	2 crisprs	csa3,DEDDh,RT,DinG,cas3,cas6	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_018017_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018017_1

3369513-3369674

Unclear

Consensus_repeat	Method
AGTTTCAATTCCTTATAGGTAAGCTAAGAACC	PILER-CR
GTTTCAATTCCTTATAGGTAAGCTAAGAACC	CRISPRCasFinder

2 spacers

cas6

The CRISPR arrays of NC_018017_1

>merge|NC_018017|1|3369513-3369674|PILER-CR,CRISPRCasFinder
AGTTTTAATTCCTTATAGGTAAGCTAAGAACGTTCTTCTCCTGTTATCTTCATATTCTTCACACCAGTTTCAATTCCTTATAGGTAAGCTAAGAACCATTGATACTAAGTCCATAAAACATGTTGATTTACGTTTCAATTCCTTATAGGTAAGCTAAGAACC

>NC_018017|1|1|3369513-3369674|PILER-CR
AGTTTTAATTCCTTATAGGTAAGCTAAGAACG	TTCTTCTCCTGTTATCTTCATATTCTTCACACC
AGTTTCAATTCCTTATAGGTAAGCTAAGAACC	ATTGATACTAAGTCCATAAAACATGTTGATTTA
CGTTTCAATTCCTTATAGGTAAGCTAAGAACC

>NC_018017|1|1|3369514-3369674|CRISPRCasFinder
GTTTTAATTCCTTATAGGTAAGCTAAGAACG	TTCTTCTCCTGTTATCTTCATATTCTTCACACCA
GTTTCAATTCCTTATAGGTAAGCTAAGAACC	ATTGATACTAAGTCCATAAAACATGTTGATTTAC
GTTTCAATTCCTTATAGGTAAGCTAAGAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018017.1\|WP_014795137.1\|3368287_3368797_-\|GyrI-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|227169
NC_018017.1\|WP_014795141.1\|3371872_3372163_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224583
NC_018017.1\|WP_014795132.1\|3363725_3364580_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
NC_018017.1\|WP_014795130.1\|3361619_3361790_+\|hypothetical-protein	unknown	unknown	unknown
NC_018017.1\|WP_014795129.1\|3361281_3361515_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_018017.1\|WP_014795131.1\|3361895_3363623_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273816
NC_018017.1\|WP_014795133.1\|3364921_3365176_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378913
NC_018017.1\|WP_014795142.1\|3372445_3372949_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240054
NC_018017.1\|WP_083838568.1\|3377748_3377958_-\|hypothetical-protein	unknown	unknown	unknown
NC_018017.1\|WP_014795134.1\|3365293_3365884_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_018017.1\|WP_014795128.1\|3358878_3360927_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226482
NC_018017.1\|WP_014795135.1\|3366759_3367206_-\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239824
NC_018017.1\|WP_014795144.1\|3374400_3375006_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|273579
NC_018017.1\|WP_014795148.1\|3378215_3381392_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_018017.1\|WP_014795138.1\|3370216_3370942_-\|DUF1835-domain-containing-protein	unknown	unknown	gnl\|CDD\|378848
NC_018017.1\|WP_172637628.1\|3367238_3368171_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_018017.1\|WP_014795147.1\|3376774_3377596_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
NC_018017.1\|WP_174270178.1\|3375858_3376785_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NC_018017.1\|WP_014795143.1\|3373448_3374189_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
NC_018017.1\|WP_014795145.1\|3375057_3375786_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695

Protein	Function_ID	Function_description	E-value
NC_018017.1\|WP_014795137.1\|3368287_3368797_-\|GyrI-like-domain-containing-protein	gnl\|CDD\|227169	COG4832, COG4832, Uncharacterized conserved protein [Function unknown].	5.94122e-15
NC_018017.1\|WP_014795141.1\|3371872_3372163_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	3.8551e-23
NC_018017.1\|WP_014795132.1\|3363725_3364580_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.22246e-17
NC_018017.1\|WP_014795129.1\|3361281_3361515_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.3973e-11
NC_018017.1\|WP_014795131.1\|3361895_3363623_-\|FAD-binding-protein	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	5.6157e-82
NC_018017.1\|WP_014795133.1\|3364921_3365176_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378913	pfam12674, Zn_ribbon_2, Putative zinc ribbon domain. This domain appears to be a zinc binding DNA-binding domain.	3.49888e-14
NC_018017.1\|WP_014795142.1\|3372445_3372949_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240054	cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.57841e-17
NC_018017.1\|WP_014795134.1\|3365293_3365884_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.91132e-11
NC_018017.1\|WP_014795128.1\|3358878_3360927_-\|AAA-family-ATPase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	2.32558e-115
NC_018017.1\|WP_014795135.1\|3366759_3367206_-\|YbaK/EbsC-family-protein	gnl\|CDD\|239824	cd04332, YbaK_like, YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).	7.43385e-30
NC_018017.1\|WP_014795144.1\|3374400_3375006_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|273579	TIGR01367, Orotate_phosphoribosyltransferase, orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis].	2.64356e-77
NC_018017.1\|WP_014795148.1\|3378215_3381392_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_018017.1\|WP_014795138.1\|3370216_3370942_-\|DUF1835-domain-containing-protein	gnl\|CDD\|378848	pfam12395, DUF3658, Protein of unknown function. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam08874. There are two completely conserved residues (D and R) that may be functionally important.	1.30746e-19
NC_018017.1\|WP_172637628.1\|3367238_3368171_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.68295e-13
NC_018017.1\|WP_014795147.1\|3376774_3377596_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	2.50781e-98
NC_018017.1\|WP_174270178.1\|3375858_3376785_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	8.76197e-167
NC_018017.1\|WP_014795143.1\|3373448_3374189_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.9983e-35
NC_018017.1\|WP_014795145.1\|3375057_3375786_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	7.51394e-116

>NC_018017.1|WP_014795137.1|3368287_3368797_-|GyrI-like-domain-containing-protein
MAGKKGIPVLIEKEGQLMAVVSTKGDPNEVMEKAMQALFGSVYGLKFQLKKQGIEFKVGKLIGRWPDAHLVPKDQWTGIWGLPVPQGTTELPQKSAEFPVRLEHWDYGTVAEILHIGPYTEEGPTIQTLHTFIEESGYEIVGVHEEEYLTKPTSKVVKTVIRYPVKQKS
>NC_018017.1|WP_172637628.1|3367238_3368171_-|GNAT-family-N-acetyltransferase
MNRSCTMSEIIIRNLSEESMEETVKFISSCQTVDESFIAWLGYSPEEIKSQLMNITPSFTESCLIAIDRGVICGFLGIYVSEEQSVLRLLGPYVSTQKSWTEIALKLLSVFKAKIPKNINLAKVAFYDANVNCKRVYEANYFNVYNAEKTLIMDKKSLISALEVSSQKINVRYYKSSDFDDFIKLHPRTAYFTGPEVISRLNQYNQLIVAEADNHVIGYVYFEMLISDGYAEICFLNVSSEFRSRGIGSQLINRVIIEAFKYDWVNHIQISVRVNNKEAERLYTRIGFEEKNVIIALQRDLKVYPWGDFT
>NC_018017.1|WP_014795135.1|3366759_3367206_-|YbaK/EbsC-family-protein
MENLQALLKETNVPFELINHDIEIRTAQEGAAYFKINVGQTAPTLILKTDKGFFALIMSGDRAHVDLDEVARILGCKKVKLAGAREVEKVTGCTVGSVSMVGHNLPCIIDKRLFQYSNIYGGSGKATCTLKINPNALGKLNKIVATLE
>NC_018017.1|WP_014795134.1|3365293_3365884_-|TetR-family-transcriptional-regulator
MKKSNRQLQKEQTKETLLNAAYQLFSKQGIMNTRMSDIAQAAGVSHGTVFAHFQTQEMLITEVIETYGEKIALHTHEAASTCEHMEELLAAHLTGIGEFELFYTRLVIENRLLPPGARDVWISIQSAISFHFSQVAQREIGTGQSIDLPLYFLFNTWIGLVHHYLANGDLFAPEGNVVGRYGDTLVDNYVKMIRRG
>NC_018017.1|WP_014795133.1|3364921_3365176_-|AraC-family-transcriptional-regulator
MKTCIACGMPMTKAADYALGDENKEYCLYCARPDGSMQSYPEKVEGMTDFLTRTQGLDKEAARQMAIRTLAKLPAWKDREITSC
>NC_018017.1|WP_014795132.1|3363725_3364580_+|MerR-family-transcriptional-regulator
MKVTIRKFADCIGVTPETIRHYREIGLLNPKVRENGYYDYTVNDALTALLTREMRTYGMQLESIRDSYDSIGEYNKLLADREAELKRDMEMIRLELSRMHETRIYASCGVRILNKVEEFEGPPTWAVATINRKEGFLPNRGMEQWVKQFPFTYVSATIPLEELNSRKGLDLYDIQIGLGALIHYVEKFQLPLGGRSYYQPGGRFIRTCITTRDLFSLSPQDISPLLEYAEAQGYVFASCTGGRLLYIDRTEKGPLFYLLVWVRVDPKSNPLAEAGKLEETLAQA
>NC_018017.1|WP_014795131.1|3361895_3363623_-|FAD-binding-protein
MKKTKVISILSVFLCLTLGLSGCTAAPAGAGSSAQGGIVPGDYLGVGNGRNGPIVVKVTLGKDSIDAIKVVSEKETHNTGSVPIKQYPDLIVQNQTLDLDIVSGATVSSAAFLNAVRNAITQAGGDPAQFTGKVIADVPHEDTTADVVVVGAGGAGMTAAISAANEGKKVILLEKLGLVGGTSNYSVESFGAVGDKTHIALGSDVTAEEQAAILTKQNPNGTAEAFSVLTHNNGAAADWLRSIGAQLTVASGQVSSTSAREVGEFGNTIVSALKAECEKTGVDVRVNSKATELVMKDGVVDGVKVSTKQGDYTISAKAVVIASGGFAANNDMVAEYAPTLKGYKSSPSPGGTGDGHLMAQAAGADLKNMDYIRVNFTYTTAENGYYYYMGSLFNTGAIFVNKDGQRFVNDQGAYGVGPQVVQQGGSGWAIFDNSLVEGVKDVREYEKLGLFVSANTIEELADKIGVNKENLVKTINNYKGYVANGKDEEFGRAMLNMTFDEAPFYAAPMTCRIQGTFGGINTDVNTQVLKTDGNAIPGLFAAGECANDGTWGANPAAVNVVFGRIAGQNAAAYVK
>NC_018017.1|WP_014795130.1|3361619_3361790_+|hypothetical-protein
MADYKKMYFALFNAVTTAINHLQDAQRDGESEYIETQDSSLTILPISADEKPKATE
>NC_018017.1|WP_014795129.1|3361281_3361515_-|helix-turn-helix-transcriptional-regulator
MGQNIKADKSIGDNIRKWRNAKGMTQEELSAQLQIHGCDISRGTLAKIEAGIRHISLDELHAIKTILEITYDDFFMR
>NC_018017.1|WP_014795128.1|3358878_3360927_-|AAA-family-ATPase
MFNQKESDEREYLGEVQRKLKTALEHMKETIDHYSREILETKRYIYENQLDLAEKAANRIAVHDSVTFGEKAIKERGKLQKLIQSPYFGRIDFAETKEGKGDPFYIGVHAFADPATSHNIIFDWRAPISSMFYDFEIGPAFYVAPVGKIDGVLTLKRQYRIRQTQMEYMIESSLNIGDEILQKELSQNSDDKMKNIVATIQREQNAIIRNDSAKVLILQGAAGSGKTSIALHRVAFLLYRYKETLTSKDLLIISPNKVFGNYISNVLPELGEENMAEISFDDIATSMLGKYHYQSFSEQVESLLADEDAEAIARIEFKATNLFVEQLQSYLEYADENYFVPTDLALGSFFVSKETLLSNYHALKRLPMKKRLRKIADDLIEKYKRHTNKKMDAAISRQIRDSIQKMFQFTDTLLLYQNFYRYLGRDDLFRFIRKNTLEFCDVYPFIYVKMYFEGEEQDYKSIQHLLVDEMQDYTPIQYAVLAKLFSCKMTILGDSYQSVNPYSSSSAEKIQPYFAGCDCMELCRSYRSTIEITGFTQKILENKKLIPIERHGDKPTITVCQTQKEQLGKIRHLIEQFRQSAQASLGIICKSQKQARLLFEQLHTAYDTMILLSFGSSEFQDGIVITSVHMSKGLEFDQVIVPDVSDDLYKTQLDRSLLYIACTRAMHKLDLTCCGKKTKFLN
>NC_018017.1|WP_014795138.1|3370216_3370942_-|DUF1835-domain-containing-protein
MDIEALTLALDIGDISDMDTGVNVHQKLLDELFAEFPGVPDGIGETNKHALVRLQEVKATQEPIRMWVCASNPEELCGLYYACHLLVDALAPLSVVRVPEQIEKDNGIISYHSTRDIVPEAFGAYTACEEPISELRRRVYANTWVGLVHENAPLRAVINGSLMGLPKDFYDFALRANMPDGKFKVAQLIGKTLGQIPGVGDRWLFLRVKAMLESGELIRVSAATEDYPYSEVVKRNFAYRQ
>NC_018017.1|WP_014795141.1|3371872_3372163_-|nucleotidyltransferase-family-protein
MQVINYIMAKRDQIVSIASHYKFSNVRLFGSVLREEEKAESDIDFLVECSDDCSLFDLISLKYDLEEILGRKIDVVTQDSIHWTLKDKIFQEARPI
>NC_018017.1|WP_014795142.1|3372445_3372949_-|NUDIX-domain-containing-protein
MELLAKPGVGGIIEHTLNEVHYILLQERYKDDAPLESGMIEIPAGKIREFENIFDCLRREIFEETGLEVTEIEGEHESIIIEMNGYKVVTYTPFACSQNIKGDYPIMVETFICRVQGNIITQSNETKNVRWVSLETLKEMMLKHEGCFYPMHITTLKRYIIYRESRR
>NC_018017.1|WP_014795143.1|3373448_3374189_-|CRISPR-associated-endoribonuclease-Cas6
MNLEIYFKPLREPVVLPIHYNYLVQAALYNSIDQELAAFLHEKGYSDGTRAFKLFCFSLIQGTYQMDRVKKTIAFEGEIKLTVSSPLQDFCQSLVNVLLTKGVMRLGAQELEIDRINVRQYEVRQNKVMVRTLSPVVLYSTLLRPDGRKYTVYFQPGETDYTRLFNENLRKKYRALYGTGEPEGEVEIRPIGTQRMKIINYKNTVIKGYAGKLLLIGPKELLQLAVDGGIGSKNSQGFGCVEVLDG
>NC_018017.1|WP_014795144.1|3374400_3375006_-|orotate-phosphoribosyltransferase
MTVSNTSLSPEEVLNLFKESEALLEGHFRLTSGRHSRQYMQCAKVLQYPHHAARLGEALAESFRDQGIDLVIGPAMGGILVAHEVGKALGTMAIFTERENGEMKLRRGFELQPGMKVLVVEDVITTGGSVREVIEVVKSYGAEPVGVGVLVNRSGGKADFGVPLASLLEIEIESFDPESCPLCAQGIPAIKPGSRAVPTGK
>NC_018017.1|WP_014795145.1|3375057_3375786_-|orotidine-5'-phosphate-decarboxylase
MELERTVSEYNRKVMVAMDVDSREKALALADQIQGSGCWLKVGMELYNAAGAGIIRDLKEKGFPIFLDLKLHDIPNTVESAVRVLAGYGADMLTIHCSGGYDMMARAVQATHEVKKQRNAEERMKIIGITVLTSLDEERLQKDLGVGRTLQDQVVALAELGQKAGIDGVVASAQESSILRQHSGPDFLVITPGIRPKGSETHDQARTLTPREALEAGSSYLVVGRPITQAPDPRQALEQLWN
>NC_018017.1|WP_174270178.1|3375858_3376785_-|dihydroorotate-dehydrogenase
MNNEMAKVNLEVNLGPLTLRNPVLTCSGTYGFGEEYAPYCPVDKLGGITLKGLTPEPRLGNPLPRLAETPAGMLNSVGLENPGLEEFLHSYLPNVRELPTTVIANISGFSLQDYEMMAGAFQSGSGIDALEVNISCPNVRHGGMHFGTHPESAEEVIALVKGKTDLPVIAKLSPNVTDIVEMAKAVERGGADIISMINTLLGMSIDIERRRPLLANKVGGLSGPAIRPVAVRMVWQVAQAVDIPIIGMGGILTWQDAVEFMLAGAKAVSIGTGNFVNPLAPLEVIEGIEEYCRRQGFASVEEIVGLAL
>NC_018017.1|WP_014795147.1|3376774_3377596_-|dihydroorotate-dehydrogenase-electron-transfer-subunit
MLDKAQVVSHQIMGDPRYKIMKLVLRTGIAREGQPGQFVHVQVSTGLDPLLRRPISIADIDREARELTLLYRIKGKGTELLAQARVGESLSLMGPLGNGFTLPEQGALILVAGGIGVFPLLPLAKAARKKNIPVRLYWGGEDEGFFTGAGLGLWQDAGVPVFLSSMDGSIGTKGNVLDLIRKDSAGSGTGQGSESSVAICGPQVMMKAVSEYFLQSGAAVEVSLEERMGCAVGACLGCVCTLKDEIGGRIRRGKVCQDGPVFQGKEVLWDDEQ
>NC_018017.1|WP_083838568.1|3377748_3377958_-|hypothetical-protein
MGLSQSSEKILEKPPKDFALRQRTDSKRAGKQSSRKDCSGVGLETGRFQPPIEQERFGREPDAAEVLSD
>NC_018017.1|WP_014795148.1|3378215_3381392_-|carbamoyl-phosphate-synthase-large-subunit
MKNKKWNKVLVIGSGPIVIGQAAEFDYAGTQACRALQEEGVEVVLVNSNPATIMTDQEVADRIYIEPLTSEFLERIIERERPDGIIPTMGGQTGLNLAFQLAEKGILQRCGVQLMGTSLESITKAEDREHFRSLMRELGEPVPPSVIVSDLEGALSFAEEIGYPVIVRPAYTLGGTGGGIAHHREELREISKSGLQASLIGQILVEKSVAGWKEIEYEVLRDGQGNCITICNMENMDPVGVHTGDSIVVAPCQTLTDREIQALRTSARRIVEALGIEGGCNVQYALHPERLEYVVIEVNPRLSRSSALASKATGYPIAKVAAKIALGYTLPELTNAVTGKTTACFEPALDYVVVKIPRWPFDKFSDADRRLGTQMKATGEVMGLGRNLETALQKAVRSLEIKAFGLLLPEFQELSDEEILERCRKPDDQLLFILAEGLRRGLSLEQIQQASRWNLYFLTAIQRIVRMSETLQSSPWDEDLLLKAKRMGFADRELARLWQTTEKEIYAYRQEKGLHPVFKMVDTCAGEFEALTPYFYSSYDQESEGIPSRNRKVVVLGSGPIRIGQGIEFDYCSVHSVLALKKAGVETIIINNNPETVSTDFDTADRLYFEPLTLEDVSAVLDREQPEGVIVQFGGQTAIGLAKPLAERGYKILGTSIEDIDRAEERGQFDEVLSTIGAKRPKGGQASSLAEAREVAARIGYPLMVRPSFVLGGRAMEIVYSSSELEKVVNRAMADFPGQELWMDQYLVGTEVEVDAISDGNNVSLPGIMEHLERAGVHSGDSIAVYPPLTLSESLIERITLLTTEIARALNVVGLLNIQYVIFQDEVYVIEVNPRSSRTVPFISKVTGLPIVDYATDVILGKTLTELKLPLGLWPVPERVAVKVPVFSFSKLHRVEPSLGPEMKSTGEVMGVDRTYEKALYKALLAGGFNMSAHGSLLVTLADRDKQEGIPLVKKFADLGFRILATEGTANILREEGIQVAPVAKLHQGSTEITDAIRQGVIQCVLNTTTHNKKQESDGFAIRRTAVEQGIPCFTSLDTASAWVHVLRSFLPSLMSLK

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Crispr_ID: NC_018017_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018017_2

3373138-3373301

Unclear

Consensus_repeat	Method
GTTTCAATTCCTCATAGGTAAGCTAAAAAC	CRISPRCasFinder

2 spacers

cas6

The CRISPR arrays of NC_018017_2

>merge|NC_018017|2|3373138-3373301|CRISPRCasFinder
TGTTTCATTCCTTATAGGTAAGCTAAAAACCAATATAGAGTAACGGATGTTGAAAAATATCGATTGTTTCAATTCCTCATAGGTAAGCTAAAAACGATAGGCCGAATTAATATCGTAGTCCCAAAGAGACTGTCGTTTCAATTCCTCATAGGTAAGCTAAAAAC

>NC_018017|2|2|3373138-3373301|CRISPRCasFinder
TGTTTCATTCCTTATAGGTAAGCTAAAAAC	CAATATAGAGTAACGGATGTTGAAAAATATCGATT
GTTTCAATTCCTCATAGGTAAGCTAAAAAC	GATAGGCCGAATTAATATCGTAGTCCCAAAGAGACTGTC
GTTTCAATTCCTCATAGGTAAGCTAAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_018017.1\|WP_014795141.1\|3371872_3372163_-\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224583
NC_018017.1\|WP_014795137.1\|3368287_3368797_-\|GyrI-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|227169
NC_018017.1\|WP_014795132.1\|3363725_3364580_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
NC_018017.1\|WP_014795131.1\|3361895_3363623_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273816
NC_018017.1\|WP_014795133.1\|3364921_3365176_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378913
NC_018017.1\|WP_014795151.1\|3383843_3384782_-\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NC_018017.1\|WP_014795142.1\|3372445_3372949_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240054
NC_018017.1\|WP_083838568.1\|3377748_3377958_-\|hypothetical-protein	unknown	unknown	unknown
NC_018017.1\|WP_014795134.1\|3365293_3365884_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_018017.1\|WP_014795144.1\|3374400_3375006_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|273579
NC_018017.1\|WP_014795135.1\|3366759_3367206_-\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239824
NC_018017.1\|WP_014795149.1\|3381429_3382521_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NC_018017.1\|WP_014795150.1\|3382552_3383857_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NC_018017.1\|WP_014795148.1\|3378215_3381392_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_018017.1\|WP_014795138.1\|3370216_3370942_-\|DUF1835-domain-containing-protein	unknown	unknown	gnl\|CDD\|378848
NC_018017.1\|WP_172637628.1\|3367238_3368171_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_018017.1\|WP_014795147.1\|3376774_3377596_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
NC_018017.1\|WP_174270178.1\|3375858_3376785_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NC_018017.1\|WP_014795143.1\|3373448_3374189_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|224499
NC_018017.1\|WP_014795145.1\|3375057_3375786_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695

Protein	Function_ID	Function_description	E-value
NC_018017.1\|WP_014795141.1\|3371872_3372163_-\|nucleotidyltransferase-family-protein	gnl\|CDD\|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	3.8551e-23
NC_018017.1\|WP_014795137.1\|3368287_3368797_-\|GyrI-like-domain-containing-protein	gnl\|CDD\|227169	COG4832, COG4832, Uncharacterized conserved protein [Function unknown].	5.94122e-15
NC_018017.1\|WP_014795132.1\|3363725_3364580_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.22246e-17
NC_018017.1\|WP_014795131.1\|3361895_3363623_-\|FAD-binding-protein	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	5.6157e-82
NC_018017.1\|WP_014795133.1\|3364921_3365176_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378913	pfam12674, Zn_ribbon_2, Putative zinc ribbon domain. This domain appears to be a zinc binding DNA-binding domain.	3.49888e-14
NC_018017.1\|WP_014795151.1\|3383843_3384782_-\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	0
NC_018017.1\|WP_014795142.1\|3372445_3372949_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240054	cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.57841e-17
NC_018017.1\|WP_014795134.1\|3365293_3365884_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.91132e-11
NC_018017.1\|WP_014795144.1\|3374400_3375006_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|273579	TIGR01367, Orotate_phosphoribosyltransferase, orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis].	2.64356e-77
NC_018017.1\|WP_014795135.1\|3366759_3367206_-\|YbaK/EbsC-family-protein	gnl\|CDD\|239824	cd04332, YbaK_like, YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).	7.43385e-30
NC_018017.1\|WP_014795149.1\|3381429_3382521_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	3.79046e-171
NC_018017.1\|WP_014795150.1\|3382552_3383857_-\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NC_018017.1\|WP_014795148.1\|3378215_3381392_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_018017.1\|WP_014795138.1\|3370216_3370942_-\|DUF1835-domain-containing-protein	gnl\|CDD\|378848	pfam12395, DUF3658, Protein of unknown function. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam08874. There are two completely conserved residues (D and R) that may be functionally important.	1.30746e-19
NC_018017.1\|WP_172637628.1\|3367238_3368171_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.68295e-13
NC_018017.1\|WP_014795147.1\|3376774_3377596_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	2.50781e-98
NC_018017.1\|WP_174270178.1\|3375858_3376785_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	8.76197e-167
NC_018017.1\|WP_014795143.1\|3373448_3374189_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|224499	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.9983e-35
NC_018017.1\|WP_014795145.1\|3375057_3375786_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	7.51394e-116

>NC_018017.1|WP_014795142.1|3372445_3372949_-|NUDIX-domain-containing-protein
MELLAKPGVGGIIEHTLNEVHYILLQERYKDDAPLESGMIEIPAGKIREFENIFDCLRREIFEETGLEVTEIEGEHESIIIEMNGYKVVTYTPFACSQNIKGDYPIMVETFICRVQGNIITQSNETKNVRWVSLETLKEMMLKHEGCFYPMHITTLKRYIIYRESRR
>NC_018017.1|WP_014795141.1|3371872_3372163_-|nucleotidyltransferase-family-protein
MQVINYIMAKRDQIVSIASHYKFSNVRLFGSVLREEEKAESDIDFLVECSDDCSLFDLISLKYDLEEILGRKIDVVTQDSIHWTLKDKIFQEARPI
>NC_018017.1|WP_014795138.1|3370216_3370942_-|DUF1835-domain-containing-protein
MDIEALTLALDIGDISDMDTGVNVHQKLLDELFAEFPGVPDGIGETNKHALVRLQEVKATQEPIRMWVCASNPEELCGLYYACHLLVDALAPLSVVRVPEQIEKDNGIISYHSTRDIVPEAFGAYTACEEPISELRRRVYANTWVGLVHENAPLRAVINGSLMGLPKDFYDFALRANMPDGKFKVAQLIGKTLGQIPGVGDRWLFLRVKAMLESGELIRVSAATEDYPYSEVVKRNFAYRQ
>NC_018017.1|WP_014795137.1|3368287_3368797_-|GyrI-like-domain-containing-protein
MAGKKGIPVLIEKEGQLMAVVSTKGDPNEVMEKAMQALFGSVYGLKFQLKKQGIEFKVGKLIGRWPDAHLVPKDQWTGIWGLPVPQGTTELPQKSAEFPVRLEHWDYGTVAEILHIGPYTEEGPTIQTLHTFIEESGYEIVGVHEEEYLTKPTSKVVKTVIRYPVKQKS
>NC_018017.1|WP_172637628.1|3367238_3368171_-|GNAT-family-N-acetyltransferase
MNRSCTMSEIIIRNLSEESMEETVKFISSCQTVDESFIAWLGYSPEEIKSQLMNITPSFTESCLIAIDRGVICGFLGIYVSEEQSVLRLLGPYVSTQKSWTEIALKLLSVFKAKIPKNINLAKVAFYDANVNCKRVYEANYFNVYNAEKTLIMDKKSLISALEVSSQKINVRYYKSSDFDDFIKLHPRTAYFTGPEVISRLNQYNQLIVAEADNHVIGYVYFEMLISDGYAEICFLNVSSEFRSRGIGSQLINRVIIEAFKYDWVNHIQISVRVNNKEAERLYTRIGFEEKNVIIALQRDLKVYPWGDFT
>NC_018017.1|WP_014795135.1|3366759_3367206_-|YbaK/EbsC-family-protein
MENLQALLKETNVPFELINHDIEIRTAQEGAAYFKINVGQTAPTLILKTDKGFFALIMSGDRAHVDLDEVARILGCKKVKLAGAREVEKVTGCTVGSVSMVGHNLPCIIDKRLFQYSNIYGGSGKATCTLKINPNALGKLNKIVATLE
>NC_018017.1|WP_014795134.1|3365293_3365884_-|TetR-family-transcriptional-regulator
MKKSNRQLQKEQTKETLLNAAYQLFSKQGIMNTRMSDIAQAAGVSHGTVFAHFQTQEMLITEVIETYGEKIALHTHEAASTCEHMEELLAAHLTGIGEFELFYTRLVIENRLLPPGARDVWISIQSAISFHFSQVAQREIGTGQSIDLPLYFLFNTWIGLVHHYLANGDLFAPEGNVVGRYGDTLVDNYVKMIRRG
>NC_018017.1|WP_014795133.1|3364921_3365176_-|AraC-family-transcriptional-regulator
MKTCIACGMPMTKAADYALGDENKEYCLYCARPDGSMQSYPEKVEGMTDFLTRTQGLDKEAARQMAIRTLAKLPAWKDREITSC
>NC_018017.1|WP_014795132.1|3363725_3364580_+|MerR-family-transcriptional-regulator
MKVTIRKFADCIGVTPETIRHYREIGLLNPKVRENGYYDYTVNDALTALLTREMRTYGMQLESIRDSYDSIGEYNKLLADREAELKRDMEMIRLELSRMHETRIYASCGVRILNKVEEFEGPPTWAVATINRKEGFLPNRGMEQWVKQFPFTYVSATIPLEELNSRKGLDLYDIQIGLGALIHYVEKFQLPLGGRSYYQPGGRFIRTCITTRDLFSLSPQDISPLLEYAEAQGYVFASCTGGRLLYIDRTEKGPLFYLLVWVRVDPKSNPLAEAGKLEETLAQA
>NC_018017.1|WP_014795131.1|3361895_3363623_-|FAD-binding-protein
MKKTKVISILSVFLCLTLGLSGCTAAPAGAGSSAQGGIVPGDYLGVGNGRNGPIVVKVTLGKDSIDAIKVVSEKETHNTGSVPIKQYPDLIVQNQTLDLDIVSGATVSSAAFLNAVRNAITQAGGDPAQFTGKVIADVPHEDTTADVVVVGAGGAGMTAAISAANEGKKVILLEKLGLVGGTSNYSVESFGAVGDKTHIALGSDVTAEEQAAILTKQNPNGTAEAFSVLTHNNGAAADWLRSIGAQLTVASGQVSSTSAREVGEFGNTIVSALKAECEKTGVDVRVNSKATELVMKDGVVDGVKVSTKQGDYTISAKAVVIASGGFAANNDMVAEYAPTLKGYKSSPSPGGTGDGHLMAQAAGADLKNMDYIRVNFTYTTAENGYYYYMGSLFNTGAIFVNKDGQRFVNDQGAYGVGPQVVQQGGSGWAIFDNSLVEGVKDVREYEKLGLFVSANTIEELADKIGVNKENLVKTINNYKGYVANGKDEEFGRAMLNMTFDEAPFYAAPMTCRIQGTFGGINTDVNTQVLKTDGNAIPGLFAAGECANDGTWGANPAAVNVVFGRIAGQNAAAYVK
>NC_018017.1|WP_014795143.1|3373448_3374189_-|CRISPR-associated-endoribonuclease-Cas6
MNLEIYFKPLREPVVLPIHYNYLVQAALYNSIDQELAAFLHEKGYSDGTRAFKLFCFSLIQGTYQMDRVKKTIAFEGEIKLTVSSPLQDFCQSLVNVLLTKGVMRLGAQELEIDRINVRQYEVRQNKVMVRTLSPVVLYSTLLRPDGRKYTVYFQPGETDYTRLFNENLRKKYRALYGTGEPEGEVEIRPIGTQRMKIINYKNTVIKGYAGKLLLIGPKELLQLAVDGGIGSKNSQGFGCVEVLDG
>NC_018017.1|WP_014795144.1|3374400_3375006_-|orotate-phosphoribosyltransferase
MTVSNTSLSPEEVLNLFKESEALLEGHFRLTSGRHSRQYMQCAKVLQYPHHAARLGEALAESFRDQGIDLVIGPAMGGILVAHEVGKALGTMAIFTERENGEMKLRRGFELQPGMKVLVVEDVITTGGSVREVIEVVKSYGAEPVGVGVLVNRSGGKADFGVPLASLLEIEIESFDPESCPLCAQGIPAIKPGSRAVPTGK
>NC_018017.1|WP_014795145.1|3375057_3375786_-|orotidine-5'-phosphate-decarboxylase
MELERTVSEYNRKVMVAMDVDSREKALALADQIQGSGCWLKVGMELYNAAGAGIIRDLKEKGFPIFLDLKLHDIPNTVESAVRVLAGYGADMLTIHCSGGYDMMARAVQATHEVKKQRNAEERMKIIGITVLTSLDEERLQKDLGVGRTLQDQVVALAELGQKAGIDGVVASAQESSILRQHSGPDFLVITPGIRPKGSETHDQARTLTPREALEAGSSYLVVGRPITQAPDPRQALEQLWN
>NC_018017.1|WP_174270178.1|3375858_3376785_-|dihydroorotate-dehydrogenase
MNNEMAKVNLEVNLGPLTLRNPVLTCSGTYGFGEEYAPYCPVDKLGGITLKGLTPEPRLGNPLPRLAETPAGMLNSVGLENPGLEEFLHSYLPNVRELPTTVIANISGFSLQDYEMMAGAFQSGSGIDALEVNISCPNVRHGGMHFGTHPESAEEVIALVKGKTDLPVIAKLSPNVTDIVEMAKAVERGGADIISMINTLLGMSIDIERRRPLLANKVGGLSGPAIRPVAVRMVWQVAQAVDIPIIGMGGILTWQDAVEFMLAGAKAVSIGTGNFVNPLAPLEVIEGIEEYCRRQGFASVEEIVGLAL
>NC_018017.1|WP_014795147.1|3376774_3377596_-|dihydroorotate-dehydrogenase-electron-transfer-subunit
MLDKAQVVSHQIMGDPRYKIMKLVLRTGIAREGQPGQFVHVQVSTGLDPLLRRPISIADIDREARELTLLYRIKGKGTELLAQARVGESLSLMGPLGNGFTLPEQGALILVAGGIGVFPLLPLAKAARKKNIPVRLYWGGEDEGFFTGAGLGLWQDAGVPVFLSSMDGSIGTKGNVLDLIRKDSAGSGTGQGSESSVAICGPQVMMKAVSEYFLQSGAAVEVSLEERMGCAVGACLGCVCTLKDEIGGRIRRGKVCQDGPVFQGKEVLWDDEQ
>NC_018017.1|WP_083838568.1|3377748_3377958_-|hypothetical-protein
MGLSQSSEKILEKPPKDFALRQRTDSKRAGKQSSRKDCSGVGLETGRFQPPIEQERFGREPDAAEVLSD
>NC_018017.1|WP_014795148.1|3378215_3381392_-|carbamoyl-phosphate-synthase-large-subunit
MKNKKWNKVLVIGSGPIVIGQAAEFDYAGTQACRALQEEGVEVVLVNSNPATIMTDQEVADRIYIEPLTSEFLERIIERERPDGIIPTMGGQTGLNLAFQLAEKGILQRCGVQLMGTSLESITKAEDREHFRSLMRELGEPVPPSVIVSDLEGALSFAEEIGYPVIVRPAYTLGGTGGGIAHHREELREISKSGLQASLIGQILVEKSVAGWKEIEYEVLRDGQGNCITICNMENMDPVGVHTGDSIVVAPCQTLTDREIQALRTSARRIVEALGIEGGCNVQYALHPERLEYVVIEVNPRLSRSSALASKATGYPIAKVAAKIALGYTLPELTNAVTGKTTACFEPALDYVVVKIPRWPFDKFSDADRRLGTQMKATGEVMGLGRNLETALQKAVRSLEIKAFGLLLPEFQELSDEEILERCRKPDDQLLFILAEGLRRGLSLEQIQQASRWNLYFLTAIQRIVRMSETLQSSPWDEDLLLKAKRMGFADRELARLWQTTEKEIYAYRQEKGLHPVFKMVDTCAGEFEALTPYFYSSYDQESEGIPSRNRKVVVLGSGPIRIGQGIEFDYCSVHSVLALKKAGVETIIINNNPETVSTDFDTADRLYFEPLTLEDVSAVLDREQPEGVIVQFGGQTAIGLAKPLAERGYKILGTSIEDIDRAEERGQFDEVLSTIGAKRPKGGQASSLAEAREVAARIGYPLMVRPSFVLGGRAMEIVYSSSELEKVVNRAMADFPGQELWMDQYLVGTEVEVDAISDGNNVSLPGIMEHLERAGVHSGDSIAVYPPLTLSESLIERITLLTTEIARALNVVGLLNIQYVIFQDEVYVIEVNPRSSRTVPFISKVTGLPIVDYATDVILGKTLTELKLPLGLWPVPERVAVKVPVFSFSKLHRVEPSLGPEMKSTGEVMGVDRTYEKALYKALLAGGFNMSAHGSLLVTLADRDKQEGIPLVKKFADLGFRILATEGTANILREEGIQVAPVAKLHQGSTEITDAIRQGVIQCVLNTTTHNKKQESDGFAIRRTAVEQGIPCFTSLDTASAWVHVLRSFLPSLMSLK
>NC_018017.1|WP_014795149.1|3381429_3382521_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MAFLVLQDGTTFEGEGFGAWPADNTMETQAGEVVFNTSMSGYQEMITDLSCTGQILVLTHPQIGNYGWHDEENEADKILLKGLVVRELSQGEGSGHKDRSLEEFCRLHKIWGLKGIDTRALTRHIRNQGTLPGVFAQTREQGMNYWGEYADNLQHREKEPHWVYQATIKESYEIPGSGPYVAVLDCGGKRNILRTLQQRGLRIRVFPAWSSAEEILATSPKGVFISNGPGDPSGLSEIIQTARALLPELPMMGICLGHQILALAAGGKTYKLPFGHRGGNHPVQDLRTGKTTMTAQNHGYAVAEDSLAGTGFQVILRNLNDGTVEGMEHTRYPIFSVQYHPEGAPGPEENKELFERFFAAVGA
>NC_018017.1|WP_014795150.1|3382552_3383857_-|dihydroorotase
MWWIKNAQVIDPAQNISDIRDVLIGEGKILELKQGITEAEAKAKSGGTEWQEIEAGGCYLFPGLIDVHTHLREPGREDKEDIASGSRAAVRGGFTTILAMPNTTPVLDQKALIEYVVNQGEKVGLARIHPIAAITKGQEGKELVEMAELAAAGAMGFSDDGRGVQRGEMMRLALEYAKLTSCPVISHCEDESLAHKGVMHRGIVSTRLGLRGIPSSSESVMVARDLLLAEESRGKLHLAHISAKESVDLIREAKKRGVDVSAEVNPHHLLYTDEAIARTPYSTSYKVNPPLRTEEDRQALIEGLLDGTIDMLATDHAPHTWEEKTNPFDEAPFGISGLETALAATWQEMVITGILPQELLIKAWSMNPAQRFNLSGGTLKVGAPADLILFDPEHTELIDTDYLASKGKNTPFLGQRLKGFPIKVWVDGCLVHEI
>NC_018017.1|WP_014795151.1|3383843_3384782_-|aspartate-carbamoyltransferase-catalytic-subunit
MGWSRKDLLHIEDLKPEEIQLILNTAKPMKDIMSRAVKKLPTFRGKSVYNLFFESSTRTRTSFETAAKILGADTTSLAVAQSSLNKGETLLDTVRTLQAMKPDIVVIRHSSSGAAQFLAKELKAGVINAGDGQHEHPTQALLDVYTMQERLGSVEGRKILLVGDILHSRVARSNVWALRNLGAEVVLVGPPTLLPPEIHSWGVKTTFNLDEELPGTDVIMALRLQLERQQSGLLPSLREYSQLYGITAERVKKTDKQTLIMHPGPVNRGVEIESSIVNSSQSVIEEQVTNGVAVRMAIMYLLMGGGTGYVVD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_018017_2	2.1\|3373168\|35\|NC_018017\|CRISPRCasFinder	3373168-3373202	35	NZ_KT149389	Lactobacillus plantarum strain BM4 plasmid pBM3, complete sequence	3690-3724	9	0.743
NC_018017_2	2.1\|3373168\|35\|NC_018017\|CRISPRCasFinder	3373168-3373202	35	NC_021227	Lactobacillus plantarum subsp. plantarum P-8 plasmid LBPp5, complete sequence	1172-1206	9	0.743
NC_018017_2	2.1\|3373168\|35\|NC_018017\|CRISPRCasFinder	3373168-3373202	35	NZ_CP028981	Lactobacillus plantarum strain LQ80 plasmid pLQ804, complete sequence	13372-13406	9	0.743
NC_018017_2	2.1\|3373168\|35\|NC_018017\|CRISPRCasFinder	3373168-3373202	35	NZ_CP035025	Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pE	3464-3498	9	0.743
NC_018017_2	2.1\|3373168\|35\|NC_018017\|CRISPRCasFinder	3373168-3373202	35	NZ_CP035025	Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pE	19577-19611	9	0.743
NC_018017_2	2.1\|3373168\|35\|NC_018017\|CRISPRCasFinder	3373168-3373202	35	NZ_CP012660	Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK06, complete sequence	15700-15734	9	0.743
NC_018017_2	2.1\|3373168\|35\|NC_018017\|CRISPRCasFinder	3373168-3373202	35	NC_021520	Lactobacillus plantarum 16 plasmid Lp16L, complete sequence	4626-4660	9	0.743
NC_018017_2	2.1\|3373168\|35\|NC_018017\|CRISPRCasFinder	3373168-3373202	35	NZ_CP046667	Lactobacillus plantarum strain 83-18 plasmid p83-18.7, complete sequence	2883-2917	9	0.743

1. spacer 2.1|3373168|35|NC_018017|CRISPRCasFinder matches to NZ_KT149389 (Lactobacillus plantarum strain BM4 plasmid pBM3, complete sequence) position: , mismatch: 9, identity: 0.743

caatatagagtaacggatgttgaaaaatatcgatt	CRISPR spacer
tggtatagaggaacggatgttcaaaaatatgcaag	Protospacer
...******* ********** ********  *

2. spacer 2.1|3373168|35|NC_018017|CRISPRCasFinder matches to NC_021227 (Lactobacillus plantarum subsp. plantarum P-8 plasmid LBPp5, complete sequence) position: , mismatch: 9, identity: 0.743

caatatagagtaacggatgttgaaaaatatcgatt	CRISPR spacer
tggtatagaggaacggatgttcaaaaatatgcaag	Protospacer
...******* ********** ********  *

3. spacer 2.1|3373168|35|NC_018017|CRISPRCasFinder matches to NZ_CP028981 (Lactobacillus plantarum strain LQ80 plasmid pLQ804, complete sequence) position: , mismatch: 9, identity: 0.743

caatatagagtaacggatgttgaaaaatatcgatt	CRISPR spacer
tggtatagaggaacggatgttcaaaaatatgcaag	Protospacer
...******* ********** ********  *

4. spacer 2.1|3373168|35|NC_018017|CRISPRCasFinder matches to NZ_CP035025 (Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pE) position: , mismatch: 9, identity: 0.743

caatatagagtaacggatgttgaaaaatatcgatt	CRISPR spacer
tggtatagaggaacggatgttcaaaaatatgcaag	Protospacer
...******* ********** ********  *

5. spacer 2.1|3373168|35|NC_018017|CRISPRCasFinder matches to NZ_CP035025 (Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pE) position: , mismatch: 9, identity: 0.743

caatatagagtaacggatgttgaaaaatatcgatt	CRISPR spacer
tggtatagaggaacggatgttcaaaaatatgcaag	Protospacer
...******* ********** ********  *

6. spacer 2.1|3373168|35|NC_018017|CRISPRCasFinder matches to NZ_CP012660 (Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK06, complete sequence) position: , mismatch: 9, identity: 0.743

caatatagagtaacggatgttgaaaaatatcgatt	CRISPR spacer
tggtatagaggaacggatgttcaaaaatatgcaag	Protospacer
...******* ********** ********  *

7. spacer 2.1|3373168|35|NC_018017|CRISPRCasFinder matches to NC_021520 (Lactobacillus plantarum 16 plasmid Lp16L, complete sequence) position: , mismatch: 9, identity: 0.743

caatatagagtaacggatgttgaaaaatatcgatt	CRISPR spacer
tggtatagaggaacggatgttcaaaaatatgcaag	Protospacer
...******* ********** ********  *

8. spacer 2.1|3373168|35|NC_018017|CRISPRCasFinder matches to NZ_CP046667 (Lactobacillus plantarum strain 83-18 plasmid p83-18.7, complete sequence) position: , mismatch: 9, identity: 0.743

caatatagagtaacggatgttgaaaaatatcgatt	CRISPR spacer
tggtatagaggaacggatgttcaaaaatatgcaag	Protospacer
...******* ********** ********  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1060033 : 1115701

Brevibacillus_phage(36.84%)

portal,capsid,plate,terminase,tail,integrase

attL 1051573:1051587|attR 1076826:1076840

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1051573:1051587	attL	NA	NA	NA	NA
WP_014792958.1\|1060033_1061323_+	homocysteine synthase	A0A0B5JD48	Pandoravirus	3.8e-10	24.0
WP_014792959.1\|1061469_1062507_-	putative sulfate exporter family transporter	NA	NA	NA	NA
WP_014792960.1\|1062637_1063549_+	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	6.0e-10	43.5
WP_014792962.1\|1063719_1064655_+	cysteine synthase A	C3U2M1	Lactococcus_phage	2.1e-79	53.4
WP_014792963.1\|1064973_1066092_-\|integrase	tyrosine-type recombinase/integrase	H7BV31	unidentified_phage	4.1e-53	33.2
WP_014792964.1\|1066123_1066591_-	ImmA/IrrE family metallo-endopeptidase	S6B1N5	Thermus_phage	2.9e-37	52.1
WP_014792965.1\|1066612_1067020_-	helix-turn-helix transcriptional regulator	A0A2P1JU09	Anoxybacillus_phage	3.7e-28	49.3
WP_014792966.1\|1067190_1067406_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014792967.1\|1067459_1068062_-	hypothetical protein	NA	NA	NA	NA
WP_014792968.1\|1068147_1068384_+	hypothetical protein	NA	NA	NA	NA
WP_014792969.1\|1068380_1068785_+	hypothetical protein	NA	NA	NA	NA
WP_014792970.1\|1068777_1068936_+	hypothetical protein	NA	NA	NA	NA
WP_014792971.1\|1068958_1069111_+	hypothetical protein	NA	NA	NA	NA
WP_014792972.1\|1069112_1069382_-	hypothetical protein	NA	NA	NA	NA
WP_014792973.1\|1069466_1069952_+	hypothetical protein	NA	NA	NA	NA
WP_014792974.1\|1070238_1070616_+	hypothetical protein	NA	NA	NA	NA
WP_014792975.1\|1070712_1071078_+	hypothetical protein	A0A0K2CZF3	Paenibacillus_phage	7.2e-15	44.7
WP_014792976.1\|1071098_1071818_+	hypothetical protein	A0A2I7SC22	Paenibacillus_phage	2.2e-47	44.1
WP_014792977.1\|1071948_1072470_+	hypothetical protein	NA	NA	NA	NA
WP_041917214.1\|1072476_1072755_+	hypothetical protein	NA	NA	NA	NA
WP_014792979.1\|1072768_1073062_+	hypothetical protein	NA	NA	NA	NA
WP_014792980.1\|1073084_1073837_+	hypothetical protein	A0A2K9V306	Faecalibacterium_phage	1.1e-14	28.8
WP_014792981.1\|1073817_1075272_+	AAA family ATPase	A7KV18	Bacillus_phage	1.3e-27	30.7
WP_148269942.1\|1075280_1075556_+	hypothetical protein	NA	NA	NA	NA
WP_014792983.1\|1075558_1076221_+	hypothetical protein	A7KV15	Bacillus_phage	1.3e-22	38.4
WP_148269903.1\|1076223_1077276_+	metallophosphoesterase family protein	NA	NA	NA	NA
1076826:1076840	attR	NA	NA	NA	NA
WP_158309856.1\|1077256_1077409_+	hypothetical protein	NA	NA	NA	NA
WP_158309857.1\|1077395_1077818_+	hypothetical protein	NA	NA	NA	NA
WP_014792986.1\|1077790_1080034_+	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	1.6e-67	30.9
WP_014792987.1\|1080100_1083079_+	DNA primase	NA	NA	NA	NA
WP_148269905.1\|1083111_1083390_+	hypothetical protein	NA	NA	NA	NA
WP_174270140.1\|1083448_1083946_+	hypothetical protein	NA	NA	NA	NA
WP_014792989.1\|1083949_1085119_+	hypothetical protein	NA	NA	NA	NA
WP_014792990.1\|1085120_1085639_+	Holliday junction DNA helicase	Q6J7Y5	Actinoplanes_phage	3.4e-10	30.9
WP_014792991.1\|1085645_1085930_+	hypothetical protein	NA	NA	NA	NA
WP_014792992.1\|1085946_1086375_+	hypothetical protein	NA	NA	NA	NA
WP_083838581.1\|1086755_1086971_+	hypothetical protein	A0A0Y0ATQ5	Bacillus_phage	3.6e-14	52.9
WP_014792994.1\|1087211_1087640_+	transcriptional regulator	NA	NA	NA	NA
WP_014792995.1\|1088014_1088176_-	hypothetical protein	NA	NA	NA	NA
WP_014792998.1\|1088665_1088920_+	hypothetical protein	NA	NA	NA	NA
WP_014792999.1\|1088992_1089919_+\|terminase	terminase small subunit	E5DV49	Deep-sea_thermophilic_phage	2.0e-53	41.6
WP_014793000.1\|1089902_1091186_+\|terminase	PBSX family phage terminase large subunit	E5DV50	Deep-sea_thermophilic_phage	4.1e-174	68.8
WP_014793001.1\|1091203_1092688_+\|portal	phage portal protein	A0A0K2CNK4	Brevibacillus_phage	1.6e-161	59.8
WP_014793002.1\|1092671_1093376_+	AP2 domain-containing protein	A0A2R4P8H7	Staphylococcus_phage	4.6e-42	44.4
WP_014793004.1\|1094916_1095204_+	hypothetical protein	NA	NA	NA	NA
WP_014793005.1\|1095653_1096292_+	phage scaffolding protein	A0A0K2CP96	Brevibacillus_phage	2.4e-45	52.3
WP_014793006.1\|1096312_1096681_+	hypothetical protein	A0A0K2CNR0	Brevibacillus_phage	2.2e-40	70.5
WP_014793007.1\|1096709_1097756_+\|capsid	major capsid protein	A0A0K2CP76	Brevibacillus_phage	2.3e-170	86.9
WP_014793008.1\|1097808_1097991_+	hypothetical protein	NA	NA	NA	NA
WP_014793009.1\|1097992_1098373_+	hypothetical protein	A0A0K2CNK9	Brevibacillus_phage	1.3e-30	53.3
WP_014793010.1\|1098374_1098734_+	hypothetical protein	S5MBV4	Brevibacillus_phage	2.9e-32	54.6
WP_014793011.1\|1098735_1099284_+	HK97 gp10 family phage protein	A0A0K2CNR5	Brevibacillus_phage	2.9e-52	57.5
WP_014793012.1\|1099288_1099741_+	hypothetical protein	A0A0A7RTI2	Clostridium_phage	3.9e-26	44.8
WP_014793013.1\|1099733_1099913_+	hypothetical protein	NA	NA	NA	NA
WP_014793014.1\|1099912_1101229_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7RTT5	Clostridium_phage	1.1e-121	51.3
WP_014793015.1\|1101248_1101716_+\|tail	phage tail tube protein	A0A0A7RVP1	Clostridium_phage	8.8e-50	59.4
WP_014793016.1\|1101824_1102505_+	Rha family transcriptional regulator	A0A0K0N5U2	Gordonia_phage	1.0e-06	35.6
WP_014793017.1\|1102501_1102924_-	hypothetical protein	NA	NA	NA	NA
WP_014793018.1\|1103066_1103480_+	hypothetical protein	A0A0A7RTN3	Clostridium_phage	1.5e-45	65.9
WP_014793019.1\|1103730_1104240_+	hypothetical protein	NA	NA	NA	NA
WP_014793020.1\|1104301_1106311_+	hypothetical protein	A0A0K2CP22	Brevibacillus_phage	2.5e-64	31.9
WP_014793021.1\|1106329_1106503_+	hypothetical protein	NA	NA	NA	NA
WP_014793022.1\|1106543_1107215_+	LysM peptidoglycan-binding domain-containing protein	A0A0K2CNM3	Brevibacillus_phage	7.9e-60	52.3
WP_014793023.1\|1107227_1108214_+	hypothetical protein	S5MNC9	Brevibacillus_phage	7.7e-104	57.5
WP_014793024.1\|1108228_1108588_+	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	1.1e-26	56.0
WP_014793025.1\|1108584_1108986_+	DUF2634 domain-containing protein	S5MTX3	Brevibacillus_phage	2.1e-23	44.7
WP_014793026.1\|1108985_1110065_+\|plate	baseplate J/gp47 family protein	A0A0K2CP27	Brevibacillus_phage	2.3e-93	50.8
WP_014793027.1\|1110057_1110645_+	DUF2313 domain-containing protein	A0A0K2CNM8	Brevibacillus_phage	1.6e-40	46.8
WP_014793028.1\|1110641_1110923_+	hypothetical protein	NA	NA	NA	NA
WP_014793029.1\|1110925_1114600_+	hypothetical protein	A0A076G7I6	Bacillus_phage	2.7e-16	28.9
WP_014793030.1\|1114612_1115137_+	hypothetical protein	NA	NA	NA	NA
WP_014793031.1\|1115140_1115281_+	hypothetical protein	NA	NA	NA	NA
WP_014793032.1\|1115404_1115701_+	hypothetical protein	A0A0S2GM64	Bacillus_phage	8.7e-11	35.2

DBSCAN-SWA_2

1335741 : 1348796

Brevibacillus_phage(41.67%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014793242.1\|1335741_1337379_+	chaperonin GroEL	A0A240F779	uncultured_virus	4.5e-165	56.8
WP_014793243.1\|1337530_1337872_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041917225.1\|1338348_1338561_+	hypothetical protein	NA	NA	NA	NA
WP_014793245.1\|1338544_1338973_+	transcriptional regulator	NA	NA	NA	NA
WP_014793246.1\|1339323_1339629_+	hypothetical protein	NA	NA	NA	NA
WP_014793247.1\|1339625_1340087_+	hypothetical protein	A0A0K2CP81	Brevibacillus_phage	1.5e-25	43.6
WP_014793248.1\|1340079_1340256_+	hypothetical protein	NA	NA	NA	NA
WP_014793249.1\|1340258_1341575_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7RTT5	Clostridium_phage	4.6e-120	51.1
WP_014793250.1\|1341594_1342062_+\|tail	phage tail tube protein	A0A0A7RVP1	Clostridium_phage	4.8e-48	58.2
WP_014793251.1\|1342207_1342621_+	hypothetical protein	A0A0A7RTN3	Clostridium_phage	3.7e-44	62.2
WP_041917354.1\|1343082_1344669_+	hypothetical protein	A0A0A7S091	Clostridium_phage	7.9e-66	32.7
WP_014793253.1\|1344708_1345374_+	LysM peptidoglycan-binding domain-containing protein	A0A0K2CNM3	Brevibacillus_phage	1.6e-49	48.4
WP_014793254.1\|1345388_1346360_+	hypothetical protein	S5MTN3	Brevibacillus_phage	8.4e-95	51.1
WP_014793255.1\|1346379_1346739_+	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	8.9e-26	52.6
WP_014793256.1\|1346735_1347137_+	DUF2634 domain-containing protein	S6B9X2	Thermus_phage	7.6e-18	40.0
WP_014793257.1\|1347136_1348216_+\|plate	baseplate J/gp47 family protein	A0A0K2CP27	Brevibacillus_phage	6.5e-96	51.7
WP_014793258.1\|1348208_1348796_+	DUF2313 domain-containing protein	A0A0K2CNM8	Brevibacillus_phage	3.2e-33	42.6

DBSCAN-SWA_3

1362139 : 1377754

Prochlorococcus_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014793276.1\|1362139_1363672_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.5e-21	29.4
WP_014793277.1\|1363824_1363944_-	DUF4023 family protein	NA	NA	NA	NA
WP_014793278.1\|1364038_1365973_-	cell wall-binding repeat-containing protein	NA	NA	NA	NA
WP_014793279.1\|1366643_1370453_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	4.1e-36	26.2
WP_014793280.1\|1370503_1371010_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.3e-24	43.9
WP_014793281.1\|1371013_1372309_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	4.8e-21	31.3
WP_014793282.1\|1372371_1373088_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	2.8e-39	40.4
WP_014793283.1\|1373106_1374525_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.1e-62	35.8
WP_014793284.1\|1374566_1375586_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F0L1	Synechococcus_phage	2.3e-74	44.8
WP_041917227.1\|1375585_1376185_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.4e-29	40.3
WP_014793286.1\|1376203_1377754_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.2e-82	53.5

DBSCAN-SWA_4

2276451 : 2286066

Staphylococcus_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014794091.1\|2276451_2277306_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.6e-12	37.2
WP_014794092.1\|2277740_2278298_+	GNAT family N-acetyltransferase	A0A0N9SKF6	Staphylococcus_phage	4.3e-11	27.4
WP_174270146.1\|2278579_2279698_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	9.5e-50	37.4
WP_014794094.1\|2279721_2280366_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.9e-41	43.7
WP_014794095.1\|2280393_2281602_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.0e-113	52.4
WP_014794096.1\|2281645_2282110_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.1e-39	53.6
WP_014794097.1\|2282226_2282847_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_014794098.1\|2282919_2283183_-	DUF2007 domain-containing protein	NA	NA	NA	NA
WP_014794099.1\|2283179_2283359_-	hypothetical protein	NA	NA	NA	NA
WP_014794100.1\|2283471_2286066_-	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	4.5e-119	32.3

DBSCAN-SWA_5

3429620 : 3437423

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014795184.1\|3429620_3431024_-	PAS domain-containing protein	W8CYF6	Bacillus_phage	1.3e-32	37.7
WP_172637666.1\|3431027_3431714_-	response regulator	W8CYM9	Bacillus_phage	8.2e-44	41.4
WP_014795186.1\|3431713_3432532_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_005811353.1\|3432686_3432959_-	YlmC/YmxH family sporulation protein	NA	NA	NA	NA
WP_014795188.1\|3433147_3433921_-	RNA polymerase sporulation sigma factor SigG	A0A0Y0AU18	Bacillus_phage	1.4e-47	44.1
WP_014795189.1\|3434046_3434775_-	RNA polymerase sporulation sigma factor SigE	A0A2H4JC68	uncultured_Caudovirales_phage	6.7e-20	43.6
WP_028305611.1\|3434774_3435677_-	sigma-E processing peptidase SpoIIGA	NA	NA	NA	NA
WP_014795191.1\|3436006_3436711_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.8e-15	26.6
WP_014795192.1\|3436703_3437423_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-17	27.8

DBSCAN-SWA_6

4196415 : 4208723

Clostridium_phage(22.22%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014795847.1\|4196415_4197486_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7S0D2	Clostridium_phage	7.2e-71	41.2
WP_014795848.1\|4197801_4198197_+\|tail	phage tail tube protein	A0A1V0DZX1	Clostridioides_phage	1.2e-26	43.1
WP_014795849.1\|4198196_4198565_+	hypothetical protein	NA	NA	NA	NA
WP_014795850.1\|4198738_4200769_+	tape measure protein	A0A2I7S9D9	Vibrio_phage	1.4e-11	29.3
WP_014795851.1\|4200952_4201591_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_014795852.1\|4201600_4202608_+	hypothetical protein	A0A1V0DZX6	Clostridioides_phage	1.5e-38	33.1
WP_014795853.1\|4202658_4203039_+	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_014795854.1\|4203035_4203452_+	DUF2634 domain-containing protein	J9QE34	Clostridium_phage	2.5e-27	46.3
WP_014795855.1\|4203444_4204485_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	1.3e-48	37.6
WP_014795856.1\|4204484_4205030_+	YmfQ family protein	S6BFJ0	Thermus_phage	6.3e-31	41.2
WP_014795857.1\|4205029_4205431_+	hypothetical protein	NA	NA	NA	NA
WP_014795858.1\|4205454_4206213_+	hypothetical protein	A0A2I5ARA7	Synechococcus_phage	1.0e-15	40.7
WP_148269958.1\|4206420_4208022_+	hypothetical protein	NA	NA	NA	NA
WP_014795860.1\|4208036_4208723_+	hypothetical protein	A0A0H3UZ49	Geobacillus_virus	7.5e-05	26.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_018017

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection