CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016791	Clostridium sp. BNL1100, complete sequence	2 crisprs	cas3,RT,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,c2c10_CAS-V-U3,DinG,Cas14u_CAS-V,csa3,WYL	0	5	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016791_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016791_1

1450296-1451654

TypeI

I-C

Consensus_repeat	Method
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	PILER-CR
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CRT

20 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_016791_1

>merge|NC_016791|1|1450296-1451654|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAATCGTAGTTGCTTGAAGGTATGAACAGTTTTACTTTGAGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATTGACATAATGCGAGACATTAGAGACGAACTTGGAGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATCATCTCATCCTCCGATTTAGCAAACATTAGCCCGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATACCTGTGAAGAATAGTGCCAATATGCCTGTAACAAGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATAGAAATTATGTAAGCGGTATTGGACACCCCAGAGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATCAGAACGTATAACAGTTCCATCATCATATATACTGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATCACTTACTACTTTTGCAATTGTACTCATATGTAAAGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATCAGTTATAACTTACAACTGACAACATAACAACAATGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATCTCAATTAATTCAGCCATTTACACTCCCTCCCCTGGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATTGTACATTTATACCTATATACCTTTTTAAAAAAAAGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATGTCATTTGTAGCGCCTTTTGCAATTTGGCTTTTAGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATAAATACTTGCGCATTACCCTGGATCACACCCACAGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATTCGCCTTTTGACTGTTTTAGATAGCTTTGCAATACGTCGCTCCTCTCGTAGGGGCGTGGATTGAAATATCTCTATGGATCCTGAAGACTTTGAGTATTATCTGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATAAACTGAACTCTGAATCTCTAGCTCTGGCCAAAGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATAAGTTGTCGGAGTGTTTGTTATAGCAATGCTTGCGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATTTAACTTCGATAATTAGCAGGTTATCGTTATCATCGTAGCTCCTCTCGTAGGAGCGTGGATTGAAATTTTACTATAAATAGCTACATAATGATAATTATTGTCGCTTCTCTCGTAGGAGCGTGGATTGAAATCCTCATCAACAAACGCTTGTGCTGCATCAAATAAGTCGCTCCTCTCGTAGGAGCGTGGATTGAAATACCATAACCCCAATATGTTGATATTTAATCAAATAGTCGCTCCTTTCGCAGGAGCGTGGATTGAAAT

>NC_016791|1|1|1450296-1451587|PILER-CR
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CGTAGTTGCTTGAAGGTATGAACAGTTTTACTTTGA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TGACATAATGCGAGACATTAGAGACGAACTTGGA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CATCTCATCCTCCGATTTAGCAAACATTAGCCC
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	ACCTGTGAAGAATAGTGCCAATATGCCTGTAACAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AGAAATTATGTAAGCGGTATTGGACACCCCAGA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CAGAACGTATAACAGTTCCATCATCATATATACT
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CACTTACTACTTTTGCAATTGTACTCATATGTAAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CAGTTATAACTTACAACTGACAACATAACAACAAT
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CTCAATTAATTCAGCCATTTACACTCCCTCCCCTG
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TGTACATTTATACCTATATACCTTTTTAAAAAAAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	GTCATTTGTAGCGCCTTTTGCAATTTGGCTTTTA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AAATACTTGCGCATTACCCTGGATCACACCCACA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TCGCCTTTTGACTGTTTTAGATAGCTTTGCAATAC
GTCGCTCCTCTCGTAGGGGCGTGGATTGAAAT	ATCTCTATGGATCCTGAAGACTTTGAGTATTATCT
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AAACTGAACTCTGAATCTCTAGCTCTGGCCAAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AAGTTGTCGGAGTGTTTGTTATAGCAATGCTTGC
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TTAACTTCGATAATTAGCAGGTTATCGTTATCATC
GTAGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TTTACTATAAATAGCTACATAATGATAATTATT
GTCGCTTCTCTCGTAGGAGCGTGGATTGAAAT	CCTCATCAACAAACGCTTGTGCTGCATCAAATAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT

>NC_016791|1|1|1450296-1451654|CRISPRCasFinder
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CGTAGTTGCTTGAAGGTATGAACAGTTTTACTTTGA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TGACATAATGCGAGACATTAGAGACGAACTTGGA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CATCTCATCCTCCGATTTAGCAAACATTAGCCC
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	ACCTGTGAAGAATAGTGCCAATATGCCTGTAACAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AGAAATTATGTAAGCGGTATTGGACACCCCAGA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CAGAACGTATAACAGTTCCATCATCATATATACT
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CACTTACTACTTTTGCAATTGTACTCATATGTAAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CAGTTATAACTTACAACTGACAACATAACAACAAT
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CTCAATTAATTCAGCCATTTACACTCCCTCCCCTG
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TGTACATTTATACCTATATACCTTTTTAAAAAAAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	GTCATTTGTAGCGCCTTTTGCAATTTGGCTTTTA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AAATACTTGCGCATTACCCTGGATCACACCCACA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TCGCCTTTTGACTGTTTTAGATAGCTTTGCAATAC
GTCGCTCCTCTCGTAGGGGCGTGGATTGAAAT	ATCTCTATGGATCCTGAAGACTTTGAGTATTATCT
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AAACTGAACTCTGAATCTCTAGCTCTGGCCAAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AAGTTGTCGGAGTGTTTGTTATAGCAATGCTTGC
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TTAACTTCGATAATTAGCAGGTTATCGTTATCATC
GTAGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TTTACTATAAATAGCTACATAATGATAATTATT
GTCGCTTCTCTCGTAGGAGCGTGGATTGAAAT	CCTCATCAACAAACGCTTGTGCTGCATCAAATAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	ACCATAACCCCAATATGTTGATATTTAATCAAATA
GTCGCTCCTTTCGCAGGAGCGTGGATTGAAAT

>NC_016791|1|1|1450296-1451654|CRT
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CGTAGTTGCTTGAAGGTATGAACAGTTTTACTTTGA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TGACATAATGCGAGACATTAGAGACGAACTTGGA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CATCTCATCCTCCGATTTAGCAAACATTAGCCC
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	ACCTGTGAAGAATAGTGCCAATATGCCTGTAACAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AGAAATTATGTAAGCGGTATTGGACACCCCAGA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CAGAACGTATAACAGTTCCATCATCATATATACT
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CACTTACTACTTTTGCAATTGTACTCATATGTAAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CAGTTATAACTTACAACTGACAACATAACAACAAT
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	CTCAATTAATTCAGCCATTTACACTCCCTCCCCTG
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TGTACATTTATACCTATATACCTTTTTAAAAAAAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	GTCATTTGTAGCGCCTTTTGCAATTTGGCTTTTA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AAATACTTGCGCATTACCCTGGATCACACCCACA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TCGCCTTTTGACTGTTTTAGATAGCTTTGCAATAC
GTCGCTCCTCTCGTAGGGGCGTGGATTGAAAT	ATCTCTATGGATCCTGAAGACTTTGAGTATTATCT
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AAACTGAACTCTGAATCTCTAGCTCTGGCCAAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	AAGTTGTCGGAGTGTTTGTTATAGCAATGCTTGC
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TTAACTTCGATAATTAGCAGGTTATCGTTATCATC
GTAGCTCCTCTCGTAGGAGCGTGGATTGAAAT	TTTACTATAAATAGCTACATAATGATAATTATT
GTCGCTTCTCTCGTAGGAGCGTGGATTGAAAT	CCTCATCAACAAACGCTTGTGCTGCATCAAATAA
GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	ACCATAACCCCAATATGTTGATATTTAATCAAATA
GTCGCTCCTTTCGCAGGAGCGTGGATTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_016791.1\|WP_041700181.1\|1452737_1454393_+\|peptidoglycan-glycosyltransferase	unknown	unknown	gnl\|CDD\|274573
NC_016791.1\|WP_014312886.1\|1454482_1455187_-\|peptidase-M15	unknown	unknown	gnl\|CDD\|350615
NC_016791.1\|WP_014312879.1\|1445332_1447270_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_016791.1\|WP_014312880.1\|1447283_1448141_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NC_016791.1\|WP_014312877.1\|1442186_1444598_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_016791.1\|WP_014312882.1\|1448792_1449824_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_016791.1\|WP_014312893.1\|1469141_1469519_+\|hypothetical-protein	unknown	unknown	unknown
NC_016791.1\|WP_148265094.1\|1469529_1469742_+\|hypothetical-protein	unknown	unknown	unknown
NC_016791.1\|WP_014312881.1\|1448127_1448796_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NC_016791.1\|WP_014312883.1\|1449833_1450124_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_016791.1\|WP_041700180.1\|1444608_1445346_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NC_016791.1\|WP_014312874.1\|1438588_1439863_+\|endolytic-transglycosylase-MltG	unknown	unknown	gnl\|CDD\|376862
NC_016791.1\|WP_014312884.1\|1452188_1452644_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_016791.1\|WP_014312889.1\|1455961_1456312_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_016791.1\|WP_187288927.1\|1455794_1455959_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	unknown
NC_016791.1\|WP_014312890.1\|1456682_1463453_+\|HYR-domain-containing-protein	unknown	unknown	gnl\|CDD\|376425
NC_016791.1\|WP_014312887.1\|1455179_1455476_-\|hypothetical-protein	unknown	unknown	unknown
NC_016791.1\|WP_041700385.1\|1439967_1440609_+\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NC_016791.1\|WP_014312876.1\|1440629_1441850_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NC_016791.1\|WP_014312892.1\|1467984_1468668_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_016791.1\|WP_041700181.1\|1452737_1454393_+\|peptidoglycan-glycosyltransferase	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	3.46688e-115
NC_016791.1\|WP_014312886.1\|1454482_1455187_-\|peptidase-M15	gnl\|CDD\|350615	cd14814, Peptidase_M15, Metalloproteases including zinc D-Ala-D-Ala carboxypeptidase, L-Ala-D-Glu peptidase, L,D-carboxypeptidase, bacteriophage endolysins, and related proteins. This family summarizes zinc-binding metallopeptidases which are mostly carboxypeptidases and dipeptidases, and includes zinc-dependent D-Ala-D-Ala carboxypeptidases, VanX, L-Ala-D-Glu peptidase, L,D-carboxypeptidase and bacteriophage endolysins, amongst other family members. These peptidases belong to MEROPS family M15 which are involved in bacterial cell wall biosynthesis and metabolism.	1.05159e-06
NC_016791.1\|WP_014312879.1\|1445332_1447270_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_016791.1\|WP_014312880.1\|1447283_1448141_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	6.62244e-120
NC_016791.1\|WP_014312877.1\|1442186_1444598_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.00188e-53
NC_016791.1\|WP_014312882.1\|1448792_1449824_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_016791.1\|WP_014312881.1\|1448127_1448796_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	5.95582e-31
NC_016791.1\|WP_014312883.1\|1449833_1450124_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.09979e-31
NC_016791.1\|WP_041700180.1\|1444608_1445346_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.26344e-90
NC_016791.1\|WP_014312874.1\|1438588_1439863_+\|endolytic-transglycosylase-MltG	gnl\|CDD\|376862	pfam02618, YceG, YceG-like family. This family of proteins is found in bacteria. Proteins in this family are typically between 332 and 389 amino acids in length. This family was previously incorrectly annotated and names as aminodeoxychorismate lyase. The structure of YceG was solved by X-ray crystallography.	2.91241e-101
NC_016791.1\|WP_014312884.1\|1452188_1452644_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.19973e-14
NC_016791.1\|WP_014312890.1\|1456682_1463453_+\|HYR-domain-containing-protein	gnl\|CDD\|376425	pfam00942, CBM_3, Cellulose binding domain.	2.76416e-16
NC_016791.1\|WP_014312889.1\|1455961_1456312_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.17748e-05
NC_016791.1\|WP_041700385.1\|1439967_1440609_+\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	2.79957e-67
NC_016791.1\|WP_014312876.1\|1440629_1441850_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.46919e-151

>NC_016791.1|WP_014312883.1|1449833_1450124_+|CRISPR-associated-endonuclease-Cas2
MMVLITYDVNTESEGGKKRLRRVAKQCVNYGQRVQNSVFECVMDAAKCREVKNKLEKIIDKEKDSLRFYYLGNNYQNKVEHIGTKESFDVEGTLII
>NC_016791.1|WP_014312882.1|1448792_1449824_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTVYITSPDSYLSLDGENLVVLKRDKEAARLPLHNLESIIAFGYTGASPALMGACAKRNTSLSFMTQSGKFLSRVVGEVRGNVTLRKAQYRLSDNMEESTKIARNFIFGKIYNGRWVIERATRDYSERLDVNKLKRVSEGLAKALNLVLNCGNLDELRGFEGESATQYFSVFDDLILQQKENFFFHGRNKRPPLDNVNAMLSFVYTLLAHDTAAALETVGLDPYVGFMHRDRPGRISLALDLMEELRCVYADRFVISLINKRVVNFNGFTQKEDGAVIMDDDTRRTILQAWQSRKQEKITHPFLQEKLEWGLVPYAQAMLLARFIRGDLDEYPPFLWK
>NC_016791.1|WP_014312881.1|1448127_1448796_+|CRISPR-associated-protein-Cas4
MTEYNEEDFLLLSGIQHFAFCRRQWALIHIEQQWQENLRTVEGNILHEKAHDDGFSEKRGDVIISRGMAVFSKTLGVSGVCDIVELHKCADGVNIFGRDGLYRPVPIEYKRGKPKENDADILQLCGQAMCLEEMLLCEIKEAYMFYGETKHRLKIILDNALRERVRDVIQEMHELFERKYTPKVKPSKSCKACSLADICMPRLCKNTSVSKYIRDSLKEAEQ
>NC_016791.1|WP_014312880.1|1447283_1448141_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSTLKNKIDFAVIISVKNANPNGDPLNGNRPRENYDGYGEISDVCIKRKIRNRLQDTNKEIFVQSDERRTDGFRSLKDRADGCQELKKLIKDKEKYAEYACSKWIDVRSFGQVFAFKAGEDNSVSIGIRGPVSIHSGVSASPIEISSMQITKSVNGETGKDPDKKSADTMGMKHRVDFGVYVIYGSINTQLASKTGFSEEDSELIKEALRTLFENDCSSARPDGSMEVHKLYWWKHNCEIGQYSSAKVHRTLNIKANVDVPKCINDYSIYSNDLEGLELKVYDGI
>NC_016791.1|WP_014312879.1|1445332_1447270_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MGWINKLYDTYENCISEVGKPRTDKKTPLLPVGHSTQNAQIGVVIDIEGNFRRARILDKNEQVTIIPVTEDSATRSSGISPHPLCDKLPYVAGDFSQYVNKEKGKDFFNKYIEQLEDWCSSEDKNKKVCAVFDYLKKKQLIADLVEQKVLYCDESGNLKKDIKLGTVSQIDAFIRFVVEDTGNSSSETAVWLDNEVYKSYIKYYLKKQNGADICYIKGEKIPYSEKHPSKVRNSGDKAKLISANDESGFTYRGRFSDKKQVIIVSYEVSQKAHNALRWLIDIQGYRFGNPKDGEEVIVAWGTNNQKVPPLLEDTDDIFGEEGDSLTIVSTQKEYARRLNKAISGYGCELDTNADIVIMGLNSATTGRLSITYFRELKGPDFLNRIEKWHNTCSWRHSYKRIQDGTDEKGKNKYKTIEFIGAPAPKEIVRAAFGIERNERLEVDDKLMKSTIERLLPCIIDGARLPYDIVNSAVNRASNPISMNPFNWEKSLSIACSLVKKYRNDKYQKEEWDMALDENQNDRSYLFGRLLAIAQEIESWAISTTGERRETNAERLMHQFKLHPYKTWGTITNKLRPYIARLGEKGKKYVELKTKVNSMISYEDFTSSEPLKDSYILGYYCQRQVFIDEMNRKIAEKNEKKLENLN
>NC_016791.1|WP_041700180.1|1444608_1445346_+|type-I-C-CRISPR-associated-protein-Cas5
MERANSVEFKVSGRYALFSDPINRIGGEKISYQIPTYQAIKGILESVYWKPTFIWYIDELRVMKYIKTQSQGIRPINYTGGNTLSIYSYLTDVEYQVKAHFEWNYNRKDLGKDRNENKHFIVANRMIERGGRRDIFLGTRECQGYVEPCKFGEGKGDYDNYGEISFGIMFHGFDYPDEAYDESGRDKLVARLWYTKMEDGYIKFIRPENCEIKREIKTMKMKEFKNSNFSGLKEFEEGGEILGLD
>NC_016791.1|WP_014312877.1|1442186_1444598_+|CRISPR-associated-helicase/endonuclease-Cas3
MFIAHIREDGTEQSVREHLENVSLLCAKACKKISLENTGRLIGLLHDMGKETIEFKNYIKYSFLHPEDKSMKGKIDHATAGAKFIYKTYYCSKDPYEKLTAQIICLVICSHHGGLIDCIDLELRDKFTSRINRDDLQINYDEAINNFFEDCREMNEIQRLLMEAVQEIKDILTRIRLVYDKKPFGKFSMGLIVKLLFSCLIDADRYDTYSFMVSKDITDNENDIFKNCLWTGLSEHLNKKLEGLPKLSHIDLLRNEISQSCKSFAKNKTGIYKLLVPTGGGKTLSSLRYALEHARKFKKDRIVYIIPFTTIIDQNSKEIKDFLDREDIILEHHSNLIIDNENEDYKLLTERWDSPIILSTMVQFLNTLFNGGTQSVRRLHNLVNSIIIFDEIQAIPIKCISMFNYAINFLSKICNTTVILCTATQPMLSMTDRPLFIEENTDIISNVGEKFRDFKRTKVIPKIKSGGYSIQDLKDFSSGLMEQVNSTLIILNTKKAAKELFKGINEENSKLSKDKRALVFHLSTNMCPAHRIESLDKIRKVLGKKKVICVSTQLIEAGVNISFECVVRSLAGLDSIAQAAGRCNRHAESSCGNVYVINMDAGSENVSRLLEIKTGRDKTLRFFEEFKQNPEAFDSDLLSPKAIDKYFEYYFNELKLQMNYTLPKPYADKTMFDLLSENKQAVQDYIDRNQVKPDLMLYNSFKTAGDYFKVIDQNTVGVIVPYGKGEELITNINGKCNIKDLKKYLKEAQQYSVNLYDQEYRNLNDLGAFIQLNNGGVITLRKEFYDEQVGITDENQQMEFLNY
>NC_016791.1|WP_014312876.1|1440629_1441850_+|U32-family-peptidase
MNKVELLAPAGNLEKLKMAIMYGADAVYIGGQKFGLRASADNFSLEDIKEGLSFAHQRDCKVYVTVNIIPHNEDLEGLPEYIKQLDELGIDAVIVSDPGIFDIVRENAPDMEIHISTQANNTNYSSAMFWYRHGAKRIVTARELSLQEISEIRSKTPDDLDLEAFIHGAMCISYSGRCLLSSYMAGRDSNRGACSHPCRWKYHLVEEKRPGEYYPVYEDEKGTYIYNSKDLCMIEHIPELVKAGIYSFKIEGRMKSSFYVATVVSAYRQAIDAYLADPDNYRFDPEWLKELSKASHREYTTGFYFNKTTGADQIYNTSSYIREYDFVGMVLEYDKTTGIAKIEQRNRMIVGDEIEVVSPRKGYFTQTIKEMHNEDGESIRTAPHAQMIVYMPINEEVGPYTILRRK
>NC_016791.1|WP_041700385.1|1439967_1440609_+|O-methyltransferase
MINYEYITQYIRKTIKPNTGLLAELEEYASKNHVPIIQPEVAALLKVIGSMKRPARILEVGTAIGYSSILFSGFLQQKGIIDTIERNEEMIEVARKNIKRAGLQGTINVIAGDALEVLTCLDKSYDMIFIDAAKGQYGEFFEHCKRMLASDGIIVSDNVLYKGMTASDELVVRRKRTIVNRMRSFLKELCEDESFETGIIPIGDGVALSYNKQ
>NC_016791.1|WP_014312874.1|1438588_1439863_+|endolytic-transglycosylase-MltG
MDRRLKVSLTGILTVIVGILLSIPNIMNYFGTLLKGFDAKFGLLNAAFTAVGLTLVLFGLFIISAGLRKMSFWLTIFIVFVFIFTVGAVITFRSTVSTDTSETVTKEVKIKADAEGAKMVDIPMGSDTKTIAGILANEGIISKPQIFTIVSKINGFDGKYQAGTHVLKSGLEFNTIMTILTGKPESKKVTIPEGLSYRQIVNTFVKKELATIDKFDYAMKYQKYDYDFVKDIKDSNNREFKLEGYLFPDTYEFAMNASEKTIINVMLENFKNKITKEHYKRAKELGMSMDEVITLASIIEREANNTKDRRLVSAVFHRRLKSRDLNKLQSCATIQYVFLNKEGKVHEKLTYEDTKITSPYNTYIHPGLPPGPICSPGMDSINAALYPDEDTDYMFFIAGPDGSTKFSKTYQEHLKAMKQYGLAK
>NC_016791.1|WP_014312884.1|1452188_1452644_+|GNAT-family-N-acetyltransferase
MPNNIIKLQPQDYFKCSNIWDMNRNSENAKKWYDELVKGIRIIFVYTENGEFIGEGALVLHNSDPDYTIPGKRVYLSRMVVKTKYRNRGIGGIILDFLINYAKVLGFEEISLGVDIDNIVAKHLYEKKGFTNIIFEGEDELGKYIKILKKI
>NC_016791.1|WP_041700181.1|1452737_1454393_+|peptidoglycan-glycosyltransferase
MTKRIKTILFIFMATFALLVTRLFYIQVVVGPGYSKEASSQRVNNVNIENSRGDFLDKNGIKLTGRTPKVTVVLKPSLLRGQNEAVDNICRILGLDPEKTKESLQRKNTPIIMEVDSETKDVLSQLNYEGISFVNTLSRYNTDTRAKHLLGYLNKVDQVGSFGLEKIYEKTLNYGKTDSIGVITDGGNNLLGGLGYRIIEENSENKKLDIRLTLDYHIQSIIEKVLDEKGLTGAIVVEDVATGDIVGMCSKPDFDPNDIENYLLNNKKPLFNRAVAQYNIGSVFKLIDLAAVFEKDQDYNMVFNCPGYIQIGDTEFKCSSYNTGGHGTIDINSALAKSCNAYFINMSLELGAEPIISMCEKLGLGKFTGLSKQGIEEAKGVIPAITDLQNPGDVANVSIGQGQTMATPVQIADMIATIANGGIKNNVNVVDCIVNEEGNKVRDLKETDQKRVLSKATSDRIKNLMEGVVNTGTGKKASIDEYGGAGGKTGSAETGQYVDGQKVVQAWFAGYFPAKSPKYSVAVFIEDGRSGGESAAPIFAEIGKEIMKKGL
>NC_016791.1|WP_014312886.1|1454482_1455187_-|peptidase-M15
MHSVKFKHPDQAYIFPKLLDAVNRVCNDFQKDAECSAGYRSLECQKATAKLVLAQNKGSYQLNDGSVYIGTGSNRRCLAAAYGKSNHCFCIAMDMNGWFEELTNSQLKKYGLVKPMSYEPWHVQLIEHIGISEDQKIAIRNSCLKGVNCTMNIKDFQSMTGLVNDGIPGPNTKYKAKEVLQVCQEILGHDFTNAEDIIKRTQSNPEYWLPKLKEIKYFDSFIMNIVKVLGCKAK
>NC_016791.1|WP_014312887.1|1455179_1455476_-|hypothetical-protein
MQLNILITCVAAVCGIIFGYITMQARIKGESKQSGIEAGQLKADIDYIKRSSDTTLLEIRCLNNTVNNHADRLARVEESAKQAHLRINEIREELVKDA
>NC_016791.1|WP_187288927.1|1455794_1455959_-|helix-turn-helix-domain-containing-protein
MVKKAQQGDKECMDKILDYFNADIEYLSRYIMLPREDAIQTLKIELMSIIHYQL
>NC_016791.1|WP_014312889.1|1455961_1456312_-|sigma-70-family-RNA-polymerase-sigma-factor
MYTNDDISVENCRKLLRRAAWRIQYKARVQQAKECQIIFENQAYNCGFETEILSKLYVKELLDTIPWEKCRFILEKTIIDEMTEKEVALELHMTQQGVNKWKKKGLELLRKNLMDF
>NC_016791.1|WP_014312890.1|1456682_1463453_+|HYR-domain-containing-protein
MKEKKSPFAAKSKSISMLHKWVCCILLGVLSFSLAVVLSDGQAYSADTSGSALYAVSPLRQQMMLSQPSPAVTGGRGFMMPLTVVAKDAEGKPLAGIPVTFEVSDSKIVIAQMRGYESRFITATTDANGMASCVNTYTGYVGEGYQLYSLITGSIENLQVKASVPGLNTITFTVQVGTYRANLVDNTPPLMSVSAKDDTGAEYIAGKWTNHTVTVTYEAKDTMSAIKSCTPEQVFSDDGANMTSTGTAVDSANNTSTLTFSPICVDKSPPSTNATLPNAEAFGWYNKNVPISFGGTDSYSGVESIYYRIGNGEEIKLPGPSATAVVELEGSQEIYFYAVDKAGNIESTKTVYTKLDKSPPEVACSVSPESYENGWNDTNVTVTLKATDIYSNVKEIHYKIGETGTENIVQGTQKSFMINTEGITDVIYWAIDRVGNSSTQQCTQVKIDKTNPAVYPPKDITVEATAVKTPLNIGIATVEDMSDVELTNDAPVDGFPVGVTFVTWKARDKVGNMTSAVQTITVKDTIAPVLTVQGDIVVEATGVGTKVSLPPAKATDIFPVAISNDSPEEFPVGETLVTWTAEDANKNITKATEKVIVIDSTKPVLTVPDNMTIEAIGRRTPVNIGQALATDIFKVDITNNAPIDYPVGKATVTWKATDANGNVTTKDQIITVQDTKAPDLVIPEDITIEATDRKMVLDIGQATATDIFNVTVSSNAPEYYTIGTTHVIWKAVDENGNVTTKVQNITVTDKTKPVITRPADIKVEATGILTPVQIQVPEAYDIFPIVISSNCPETKLFPIGTTIIKWKVIDENGNESIIEQRITVVDTTKPLLTVPKDVKVEATGIRTPVNIGQAIASDIFSVDIKNNAPNDYPIGTTKVIWTATDANGNITIGYQNVTVEDTTKPVLSVPGDKKVEATAIRTPVDPGIATAKDIFPVTIKNDAPADYPIGTTPITWTATDENQNADTKVQNITIVDTTKPLLIIPDDITIEATQVRTPVDIGKAEAKDIFPVEIKNNAPADFPVGITKVIWTATDANGNQSEALQNVIVKDTTKPVLTIPNDITLEATAKLTPVDIGKADAKDIFPVEIKNNAPEAYPLGTTVVTWTATDANGNAITKTQNITITDKTCPILEVPEDITKEATAILTPADIGQAIATDIFDPSTKNDAPQAYPLGTTVVTWTATDTNGNTTTKTQRIRIVDTTPPELNIPGDITKEATAILTPVDIGQASAKDIFDVKVANNIPEAYPVGTTEVTWTATDANGNSTTKVQKITITDTTKPTLKVPEDIKTEATAINTPVDVGIAEATDIFEVNVKNDAPETFPIGTTEVTWTATDANGNVTTAVQKVTIQDTTKPLLLIPDDITTEATAVNTPVAVGDPKATDIFKVEVKNNAPEAFPIGLTEVTWTATDENGNVTTAVQKVTIQDTTKPLLLIPDDITTEATAVNTPVVIGTAEATDIFKVEVKNNAPEAFPIGLTEVTWTATDENGNVTTAVQKVTIQDTTKPLLLIPDDITTEATAVNTPVAVGDATATDIFKVEVKSDAPETFPIGTTEVTWTATDENGNVTTAVQKVTIQDTTKPLLLKPDDITTEATAVNTPVIIAEATATDIFKVEVKSDAPETFPIGLTEVTWTATDENGNVTTAVQKVTVQDTTKPELVIPKDITTEATAVNTPVTVGTAEATDIFKVEVKSDAPETFPIGLTEVTWTATDENGNEATAVQKVTIQDTTKPELVIPKDITTEATAVNTPVVIGTAEATDIFKVEVKSDAPEAFPIGTTEVTWTATDENGNAATAVQKVTIQDTTKPVISVPQDITTEATAVNTPVPIGTAEATDIFKVEVKNNAPEAFPIGTTEVTWTATDENGNAATAVQKVTIQDTTKPVMSVPQEITTEATAIKTPVEIGKATAYDIFHVDITNDGLLDYPINTTKVTWTATDANGNVTTGYQNVTIIDTTKPKLTVPENITVEATAVRTPVSIGRATATDIFPIMLMNDAPKDYPIGKTIVTWMARDINGNESQAEQYITVKDTTPPVLKIPADITVAATGSRTKVLIGTATATDIFGANVTNDAPADFPVGKTAVTWTATDANGNITKAVQYINVVQKYVIKSFNANTNTTSNAIEPKILLENTGDTQLKLSDLKIRYYFTSEGDKYQLYWCDYAQIAGTAGSRNVTSCVKGSFAKLSGTQCDHYLEISFSNSTEVLKPGEKVVVQGRFAKIDWSSYTQTNDYSFNPTARDYTETSKITVYSSGNLIGGIEP
>NC_016791.1|WP_014312892.1|1467984_1468668_+|hypothetical-protein
MGEIEEELKDLPKEWVELLNFMPSIKAQFIRDKKLNRDEMISPYFFSYFIDDYKRCEPFFLCFESGKEVFDNFYELYGKEEPIITEDKTLNQDELSQLLTKHIYGMNYLLEIGGEETYDIHEMKIKELSEEDFLNQYDSDDIENEDIKGCCSQVMRLNILPDENINPIVEFEEALYELTLDYNLIFYILWPLGKVDDVENPYKPYVELWKKEIKPYIINKNLLVAVR
>NC_016791.1|WP_014312893.1|1469141_1469519_+|hypothetical-protein
MAKAVDGLFAGLQKLYKAVMAGIKKFLTMDFKKIFGAILEAAEIAAEIALAFATGGGSVLIQIVKWLATTLLQLLRTAGSVMNFVNTIKSIKLKDILKLLSAAGIAGNIGSNTGTACTVNEVNSQ
>NC_016791.1|WP_148265094.1|1469529_1469742_+|hypothetical-protein
MVLNFIISHPPSALIKAVFKGIEAIAGKSIVELVRQYIPFADKLFDKIAGSGPVQSLMKPLQGPIANPPI

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Crispr_ID: NC_016791_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016791_2

2063114-2063186

Orphan

Consensus_repeat	Method
TGTAAAGTAAAAATACTTGACAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016791_2

>merge|NC_016791|2|2063114-2063186|CRISPRCasFinder
TGTAAAGTAAAAATACTTGACAATATACTATGATTGTTTTAAAATAAGCTGTAAAGTAAAAATACTTGACAAT

>NC_016791|2|2|2063114-2063186|CRISPRCasFinder
TGTAAAGTAAAAATACTTGACAAT	ATACTATGATTGTTTTAAAATAAGC
TGTAAAGTAAAAATACTTGACAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_016791.1\|WP_014313370.1\|2063225_2063582_+\|YlxM-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NC_016791.1\|WP_014313364.1\|2054397_2056710_+\|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl\|CDD\|235937
NC_016791.1\|WP_031341788.1\|2065399_2065630_+\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|179040
NC_016791.1\|WP_014313361.1\|2052659_2053637_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NC_016791.1\|WP_014313375.1\|2066207_2066897_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NC_016791.1\|WP_014313360.1\|2050725_2052606_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NC_016791.1\|WP_014313368.1\|2060240_2061893_-\|OPT/YSL-family-transporter	unknown	unknown	gnl\|CDD\|224216
NC_016791.1\|WP_014313369.1\|2062333_2063110_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350237
NC_016791.1\|WP_014313376.1\|2067081_2067252_+\|YezD-family-protein	unknown	unknown	gnl\|CDD\|378371
NC_016791.1\|WP_014313366.1\|2057412_2059299_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293739
NC_016791.1\|WP_014313377.1\|2067387_2068296_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|273539
NC_016791.1\|WP_014313374.1\|2065698_2066208_+\|16S-rRNA-processing-protein-RimM	unknown	unknown	gnl\|CDD\|234650
NC_016791.1\|WP_014313379.1\|2068688_2069567_+\|nitrogenase-iron-protein	unknown	unknown	gnl\|CDD\|349759
NC_016791.1\|WP_014313362.1\|2053663_2053885_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226852
NC_016791.1\|WP_014313367.1\|2059372_2060218_-\|type-II-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237346
NC_016791.1\|WP_014313359.1\|2047638_2050470_+\|UPF0182-family-protein	unknown	unknown	gnl\|CDD\|377101
NC_016791.1\|WP_014313371.1\|2063617_2064964_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NC_016791.1\|WP_014313378.1\|2068324_2068672_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238432
NC_016791.1\|WP_187288916.1\|2056778_2057288_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|274161
NC_016791.1\|WP_014313372.1\|2065006_2065252_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588

Protein	Function_ID	Function_description	E-value
NC_016791.1\|WP_014313370.1\|2063225_2063582_+\|YlxM-family-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	5.50079e-29
NC_016791.1\|WP_014313364.1\|2054397_2056710_+\|anaerobic-ribonucleoside-triphosphate-reductase	gnl\|CDD\|235937	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NC_016791.1\|WP_031341788.1\|2065399_2065630_+\|KH-domain-containing-protein	gnl\|CDD\|179040	PRK00468, PRK00468, KH domain-containing protein.	5.3755e-29
NC_016791.1\|WP_014313361.1\|2052659_2053637_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.60603e-69
NC_016791.1\|WP_014313375.1\|2066207_2066897_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.01601e-156
NC_016791.1\|WP_014313360.1\|2050725_2052606_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.67088e-29
NC_016791.1\|WP_014313368.1\|2060240_2061893_-\|OPT/YSL-family-transporter	gnl\|CDD\|224216	COG1297, COG1297, Predicted membrane protein [Function unknown].	2.95864e-43
NC_016791.1\|WP_014313369.1\|2062333_2063110_+\|NYN-domain-containing-protein	gnl\|CDD\|350237	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains. This N-terminal LabA-like PIN domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain), has been shown to play a role in cyanobacterial circadian timing. The LabA-like C-terminal domains characteristic of this subfamily may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains). The function of the N-terminal domain is unknown. The LabA-like PIN domain family also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	6.42065e-66
NC_016791.1\|WP_014313376.1\|2067081_2067252_+\|YezD-family-protein	gnl\|CDD\|378371	pfam10055, DUF2292, Uncharacterized small protein (DUF2292). Members of this family of hypothetical bacterial proteins have no known function.	1.85054e-09
NC_016791.1\|WP_014313366.1\|2057412_2059299_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	1.15721e-56
NC_016791.1\|WP_014313377.1\|2067387_2068296_+\|radical-SAM-protein	gnl\|CDD\|273539	TIGR01290, FeMo_cofactor_biosynthesis_protein_NifB, nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. NifB belongs to the radical SAM family, and the FeMo cluster biosynthesis process requires S-adenosylmethionine. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	7.00434e-86
NC_016791.1\|WP_014313374.1\|2065698_2066208_+\|16S-rRNA-processing-protein-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	4.04422e-66
NC_016791.1\|WP_014313379.1\|2068688_2069567_+\|nitrogenase-iron-protein	gnl\|CDD\|349759	cd02040, NifH, nitrogenase component II NifH. NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.	4.08387e-156
NC_016791.1\|WP_014313362.1\|2053663_2053885_+\|hypothetical-protein	gnl\|CDD\|226852	COG4443, COG4443, Uncharacterized protein conserved in bacteria [Function unknown].	4.6165e-32
NC_016791.1\|WP_014313367.1\|2059372_2060218_-\|type-II-pantothenate-kinase	gnl\|CDD\|237346	PRK13317, PRK13317, pantothenate kinase; Provisional.	4.40101e-105
NC_016791.1\|WP_014313359.1\|2047638_2050470_+\|UPF0182-family-protein	gnl\|CDD\|377101	pfam03699, UPF0182, Uncharacterized protein family (UPF0182). This family contains uncharacterized integral membrane proteins.	0
NC_016791.1\|WP_014313371.1\|2063617_2064964_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NC_016791.1\|WP_014313378.1\|2068324_2068672_+\|hypothetical-protein	gnl\|CDD\|238432	cd00852, NifB, NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.	1.05786e-25
NC_016791.1\|WP_187288916.1\|2056778_2057288_+\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|274161	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism, Protein fate, Protein modification and repair].	4.9561e-54
NC_016791.1\|WP_014313372.1\|2065006_2065252_+\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	3.95116e-46

>NC_016791.1|WP_014313369.1|2062333_2063110_+|NYN-domain-containing-protein
MSPDEMRLAVLIDAENVPYSNVKGIMEEIARHGTPTIKRIYADWTKPTMSGWKNVLLENAITPIQQYSYTSGKNSSDSAMIIDAMDILYSDQVEGFCIISSDSDFTRLVTRLREAGKKVYGIGERKTPSPFIAACDKFTYIEIISASLQNSRTFDNGAKKEEITEKEQRSGTISIGKDIINLISVSINDVEDENGWAFLGDVGNLIIKKQPDFDPRNFGFYKLTHLIRKLKEFEIEERDTNNSKIKHIYVRNRSKRTD
>NC_016791.1|WP_014313368.1|2060240_2061893_-|OPT/YSL-family-transporter
MNNQERKFMGVEQLSLRSLVTGSLGSCVITASSMYVALRMSALPWPTIFVAVLSMGLLKLFGKTTNNEINITQTAMSAGAMVAGGLAFTLPGLWIMGIWKGSAGFSSNYIKVLAIAVAGMLLGSVTSYILRYRYIVKNALPFPIGQAAAETIKAGDEGGKKSAVLFGTMLISTVYTFLRDQVRLVPDAFMFNKNSNLGVWNSPMAVGMGYILGTLYTGVWFLGALFSNAFIIPFGPKLGLFTDKTAASSFTTSAGIGLLVGTGLGVLVGIIYSYVKKLKGRQKGIYSEKAENFKNKNNIFNPSRILIVSGTVIAFIFTVAGGIPVLPSVLLIIGIYVVSLMAATITGQTGINPMEIFGIIVLLAIRIFVKIDAMDALMVAACTAIASGFSGDLFNDYKAGQMLGTNPKAQLISQIVGGVVGTVVASLALFAIINQFGEVGSKTALPAAQAVGVSAMINGIGNPIVFGIAVGIGAVLYLFGLPTATLGIGVFLPFTISSAVFIGGVIRFIADRVRSKSSSDDTGTVAASGLLGGEGITGVGIALVKMFTRG
>NC_016791.1|WP_014313367.1|2059372_2060218_-|type-II-pantothenate-kinase
MGKVIGIDLGGSTTKIVGFDGKTMISPFLVRANDPIASVYGAFGKFLSINSFKIEDIEQIMVTGVGSSFVDSRLFGIPTAKVDEFMAIGLGGLFLSNLKKAIIVSMGTGTALVKAENNTAVHLGGTGIGGGTLLGLSNRMLNVRHFDELIETAAGGDLSNVDLTIGDISKEALETLPSETTASNFGKISDLVTKADLALGIINLVFQTIGMVAVFNTRIDNIRDVVLTGNLTNVPQAQNIFDQLSALYNVNFQIPEHAEYATAVGAAICFNTEGISMREVL
>NC_016791.1|WP_014313366.1|2057412_2059299_+|sulfatase-like-hydrolase/transferase
MVNLFSAKSKKKIELGYIWTFLLIAVFTVFLTVTGFLLQPNDFHTIAANVLKHPSLFILNGFPVFAGILFFYLVFNNVFFSVSLVSTVFHVASLINRFKIIFRDDPFVPQDVFLGAEAANIMSDTKMKLDVTLISLVLFFSLAMLVLGVFIKFKKIKVPIKIAGCVAILGIAILSNSYVYSSRKIYDRMPSKSKAYVAGVFNDVGFNYCFLYNMSAYKMEVPENYSKSAAEKLVKKYTKSKAIPKVKASVIIVMNEAFSDISLDKAFKFSSDDDPLKNFKVISKEKNSVSGHLVVPNFGGGTANTEFDVMTGMQTLNLNTVPTSSFRLIHRNIKSIAGLFGGDSYKKYFMHPGDSWFYNRANVYRFLGVENQTFIDQFKKPEDLKGSLISDKAAGKKIISLYEKNTDSGKNPVFNYNVTIQNHMPYTSNKYNGLKVKEVPTDKQLSPQAKTLLSNYFEGVRDEDKLLKTLTDYFRNRQEPVILVFFGDHKPSLGDSYLAYKEAGIDINESGTIEQAMNSREVPYIIWANESAGNSLDFASSARNLGLPEDNTISANYLGAIVLQLIGYDGYDPYFDFLNELRKELPVITRYNFKTKNGYTDKLTEKQQAMVQDLRIWQYYRMTSDKAD
>NC_016791.1|WP_187288916.1|2056778_2057288_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MSKQIRISGIINESIVDGPGIRMVIFAQGCRHNCKGCHNPQTHSFDGGELIEIEGIVEKIRKNPLLDGVTFSGGEPFEQADTFAVLAKEIKELGLNVMVYSGYTFEQLIENSNYRKGWMELLNNTKILVDGPFIQEQKDLLLKFRGSANQRIIDIEKSLASGNIELADL
>NC_016791.1|WP_014313364.1|2054397_2056710_+|anaerobic-ribonucleoside-triphosphate-reductase
MITKIRKRDGREVPFNIEKIANAIFKAASATGGKDYRTAMELAERVVDFIESSLDRRVPSVEEIQDAVEKVLIETGHAKTAKEFILYRADRTKVREMNTRLMKVYEELTFKDAKDNDLKRENANIDSDTAMGTMLKYGSEGAKQFYEMYVLKPEHAQAHNNADIHIHDLDFLTLTTTCCQIDIQKLFRGGFSTGHGYLREPNDISSYSALACIAIQSNQNDQHGGQSIPNFDYGMSMGVAKTFEKGYKQNLKKSLELLIGNDFSNEIAEAREEIYKEFGIRPALNRMEAYIKAEKKILLKYIPDESLLEKAQTFAVKKTEEETDRITYQAMEAFVHNLNTMHSRAGAQTPFSSINYGTDTSPEGRLVVKNLLLATEEGLGNGETPIFPIHIFKVKDGINYKESDPNYDLFKLACRVSAKRLFPNFSFIDAPYNLRYYKDGEPNTEIAYMGCRTRVIGNTYDPDREVIFGRGNLSFTTINLPRIALRSNKNLNIFFEELDKKIDLVTDQLYERYLIQAKKKVKNFPFLMGQGVWIDSENLNWEDEVGEVLKHGTLTMGFIGLAECLKALIGRHHGESEQAQNLGLEIVGYMRKRMDEASEKYNMNFSLIATPAEGTSGRFVKYDKNVFGNIDGVTDKEYYTNSFHVPVYYKINAMDKIKTEAPYHELTNGGHITYVEVDGDPLNNLEAFEKIIRAMKESGIGYGSINHPVDRDPVCGYTGIIGDTCPRCGREEDDDRHFERIRRITGYLVGTLDRFNDAKKAEVRDRVKHM
>NC_016791.1|WP_014313362.1|2053663_2053885_+|hypothetical-protein
MAEIKFEITENIGTLSESGKGWYKELNLVSWNDRDPKYDIRDWSPDHEKMGKGVTLTKEELVELKKLLNSLDI
>NC_016791.1|WP_014313361.1|2052659_2053637_+|ROK-family-protein
MKYTIGIELGVKNIVAGILDKNGKLIRRDTVPTNKDREFQEIIKDVCALIRKITADEDIEIKNIKYIGVGCPGVTDNKRGIVLKNYSLNFTNAHVRNEIQKHINLPVFVENDANCVAIAEYLLGAAYGTESSLTIKVGVGIGGGIIIDGSIYNGFNFGGTEFGHMVIEYNGRPCSCGRKGCWEQYVSGSSLINQTKQLAAENPDSILGKMVMNNVAQITELTIFEAAKAGDEKAKKLCSEFVEYFAEGLTNIVNILMPEVVIIAGPISKLGNAIVNPLVELLKDRIYSKELNLPEFKMAEMGNAGIVVGAAMLGSFKDEKLDDLV
>NC_016791.1|WP_014313360.1|2050725_2052606_+|APC-family-permease
MFKKVRRILVGKPLKNEALKDQKMGVLWGLPILSSDAISSVAYAGQEVLMVLIPAVGMLAFRQLSYISIAIICLLMILMLSYRQVIDSYPNGGGAYVVAKENLGILAGVTAGAALSVDYVMTVAVSISSGVEQFTTAFKGFKPYSVIIAVAMVILLMIGNLRGIRESSRVFGIPAYAFIIGMVVMIAAGFAKVAGGYVPPPAQDMPDIVKPLTLMLVLTAFSNGCAAVTGVEAVSNAVPNFKNPSTKYAKRVLFLLSMVILVLFGGSSIIANIYHVNPSHGNAMLVMIAGEIFHNTKFDFMFYYITATTFIILVLAANTAYSGFPMLISIMAKDGYAPRQLSMRGDRLSYDNGIILLSVLASALMIVFKADVSKLIGLYAIGVFISFTLSQTGMFIKWKKSKEKGWKHKAIINGTGAVVSGIVVIIIAFTKFREGAWLVVILIPILILLIFKVKKHYEAVMRQLRLKPEEIANFDINKAVYRNRVIVPIESINRSSLRALRYAKTISDNITAFSVVIDEADAKKIKEKYNALNMDIPIVVKYSPFRKVVDPMLKFIESAEYDYQNGDMITVILPQFAVKKWWHRFLHNNTRYYVEKELLKHKHIVVSVMPLQLRDDDFVLNSHKYD
>NC_016791.1|WP_014313359.1|2047638_2050470_+|UPF0182-family-protein
MEEVYDYYKEKDKRQKSGKGRKGKITALIVFALIVVAAIIGSSIYMELIQLKELNPNADYTTVYTKNLLYKTVFFIISFVFITLFVFITNKVMGKNLKKYFTNNNLEQRKLINAPVALVIGIIGAFLTKEFFFNKALLFLNSANFGIKDPQFGQDIGYYMFQRPFYMSLFNFISNLWLFLVFYTAAYYLIVLMAALNSTLSTKDLKDKTILRHNLINIAIFFVLKTISFKFQRESLLFSNFTNKNITGAGYVDTNIWIKYYTIAPVIVLVIVLLTGFFMWKGKLKKSAVVIAAFPALFILLTLVSTIIQNAIVGPNEIEFEDKYLKNNMTETRTAFGLDKIQPYDFSKIDELTPEIINNNRNTVDNIRVVDYTPTLNSNKQLQSNTNFYTFHNGDILNYTVNGKEIPVLISAREINSNYLRNQNFVNKTFKYTHGYGVVVNPINKLTAQGQVDFLISGLKMDTVDKVNLKVTEPRIYYGQLTNNYVIVNPKSAGKLSEIDYDGTTFSYFDEQGNKYEKIKMNLLNRILFSIKYADTNLLVSSNISSNSKILLNRNVVERAQKGIPFLKVDSDPALNITADGKLVWVLDAYSISNNYPYSQYYYTQSEDDDLQALNGINYIRNSVKITVDAYDGTVKYYVIDKEDPIIKAYQSVYPGLFAKDEFPQDLASHVRYPETLFKLQTEVLKKYHLDPKKEDNISIFYTGQDEWNIAKYPDPNNESGARDIDAYYNMVKLPGDIGKNEELILMRPFTPSGEKHNMVSWLAVRNDMANYGKMILFNFPKNTNILGPDQFEVNINQISEISEDMTLWGQGGSRVFKGSLLVIPIENSILYVEPIYIQANSASSIPQVKRVVVGYQQGADFKHGIGDNLDSAINNLFGGNVKPADKPEPNNQNQQDEDNTTAPPADESQSLDRQKLDELQQKLDQLMKQSQEINDLLKSLRN
>NC_016791.1|WP_014313370.1|2063225_2063582_+|YlxM-family-DNA-binding-protein
MNKIYETSLLLDFYGQLLTDRQYEILDLHYNNDFTLTEIAEQLNISRQGVYDNEKRGRALLIEYENKLGLLGKFSQQKQKAQNVLEMMKKLKHGELGKENTDIIKKVITEIEDLANNI
>NC_016791.1|WP_014313371.1|2063617_2064964_+|signal-recognition-particle-protein
MSVFEGLSGKLQETIKKIRGQGRVSEKDVKDMMREIKLALLEADVNFKVVKEFISKVSERAVGSDVLESLTPGQQVVKIVHEELIELLGREQSKVTFAPKPPTIFMMAGLQGAGKTTTAGKLANLLRKQGKNPLLVACDVYRPAAIKQLQVLGNQLNIPVFTLENNQNPVQIAKEAVSFAEMKQHDLVIIDTAGRLHIDEKLMDELLNIKNSVKPHEILLVVDSMTGQDAVNVSETFNEKLGIDGVVLTKLDGDTRGGAALSVKSVTGKPIKFAAMGEKLNDIEPFFPDRMASRILGMGDVLSLIEKAQEAYDEKKAIELEKKMRTMTFTLEDFLDQMQQIKKMGPIGDLLGMMPGVDSKALKDIDIDEKQMGRTEAIIQSMTRKERLDPSIINGSRRKRISAGSGTTIQEVNALLKQFEQMKKMMKMMSDMGKKGKKGGLGKFKMPF
>NC_016791.1|WP_014313372.1|2065006_2065252_+|30S-ribosomal-protein-S16
MAVKIRLKRMGAKKNPFYRVVVADSRYPRDGRFIEEIGTYNPVVEPAQIKIDAEKAQKWIKNGAQPTDTVKSLLKKQGIVE
>NC_016791.1|WP_031341788.1|2065399_2065630_+|KH-domain-containing-protein
MKELLESIARALVDFPDEVFVNEIQNEKSIILELKVAKDDMGKVIGKQGRIAKAIRTVVKAAAVKDNRRVVVDIIQ
>NC_016791.1|WP_014313374.1|2065698_2066208_+|16S-rRNA-processing-protein-RimM
MLEYLIVGQLVNTHGVKGELKATAQTDDPQRFKKLKWVYIDKNGSLEKYNISGVKFFKQFVIIKFEGIDSIEEAEKLKGFYIKVDRANAVKLPKNSFFITDIIGLKVYDENNQLLGELKDVIQTGSNDVYVVRDSESKEILIPALKSVVKEISIEEGKISVILPKGLLD
>NC_016791.1|WP_014313375.1|2066207_2066897_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKFDVLTLFPELFVSVMGESIIGRAQKNGLVEINAVNIRDYSKDKHKKVDDYPFGGGNGMVMMCQPVIDAYKAITEGREQKPKVLYMSPQGKVLTQEMAKELSTQEHLILLCGHYEGIDERIIEEIVDEEISIGDYVLTGGELPAMVLIDCVSRLIPGVLSTEGSFSDESHFNGLLEYPQYTRPADYNGNKVPDVLLSGHHANIEKWRMQQSLDRTREKRPDLYEKFKK
>NC_016791.1|WP_014313376.1|2067081_2067252_+|YezD-family-protein
MSQQQQSIEQLKVPISEQDIQKLYDMAKSLRYGSITLVFQDGNLIQLEKNEKVRVK
>NC_016791.1|WP_014313377.1|2067387_2068296_+|radical-SAM-protein
MTNCCKVEIEEIQTDQKFNHLLGKHPCFSARAHFKYGRIHLPVSPTCNIQCKFCKRCINKIENRPGVAAKVLTPKEAIKIVAKALELCPEISVVGIAGPGETLATADALETFEMLNTEYPDLIKCLSTNGLMLDKYSERIINAGIKMVSVTVNAVEPEILQNICSGIFWNGSYLNGYEGAEKLIQEQIKGIEKLSGKGIAVKVNTVLIPDLNYEHIEEIARVVLKAGASIINIIPLIPQHEMKSFRPPDCNELNNAREWAGKYLNVFRHCRQCRADACGIPGKGKELGNLLYDFPMETFSHG
>NC_016791.1|WP_014313378.1|2068324_2068672_+|hypothetical-protein
MAYKIAIASSDGKVVNQHFGHCRQFLIFENDETGRWKFVERRNTFPACKAGEHSEASMQYVVTLLEDCKAVAAAQIGLGAVQALTLAQIRAFCAVGLIEQVLEKVNETLNIKTES
>NC_016791.1|WP_014313379.1|2068688_2069567_+|nitrogenase-iron-protein
MAKKIKQIAIYGKGGIGKSTTTSNISAALSAAGYKVMQFGCDPKSDSTNTLRGGNYIPTVLDTLREKNTVKAHEVIFEGFNGIYCVEAGGPAPGVGCAGRGIITAVQLFKQQNIFEELDLDFVIYDVLGDVVCGGFAVPIREGIAEHVFTVSSADFMAVYAANNLFKGIHKYSNSGGALLGGVIANSINAPYAKDIIDDFAKQTHTQVVEYVPRSVTVTQSELQGKTTIEAAPDSQQAKIYKALAAKIAGHEESKVPSPLDVKELRNWAARWGDYLLALETGEIRTVAAGNL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016791_2	2.1\|2063138\|25\|NC_016791\|CRISPRCasFinder	2063138-2063162	25	NZ_CP039041	Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence	184699-184723	4	0.84
NC_016791_2	2.1\|2063138\|25\|NC_016791\|CRISPRCasFinder	2063138-2063162	25	NZ_CP008919	Providencia stuartii strain ATCC 33672 plasmid unnamed, complete sequence	38594-38618	5	0.8
NC_016791_1	1.10\|1450926\|35\|NC_016791\|PILER-CR,CRISPRCasFinder,CRT	1450926-1450960	35	NZ_LN831028	Fusobacterium nucleatum subsp. polymorphum strain NCTC10562 plasmid 2, complete sequence	2903-2937	7	0.8
NC_016791_1	1.9\|1450859\|35\|NC_016791\|PILER-CR,CRISPRCasFinder,CRT	1450859-1450893	35	MH203383	Ecterococcus phage vB_EfaS_AL3, complete genome	25782-25816	8	0.771
NC_016791_1	1.9\|1450859\|35\|NC_016791\|PILER-CR,CRISPRCasFinder,CRT	1450859-1450893	35	NC_042126	Enterococcus phage vB_EfaS_AL3, complete genome	25782-25816	8	0.771
NC_016791_1	1.5\|1450594\|33\|NC_016791\|PILER-CR,CRISPRCasFinder,CRT	1450594-1450626	33	LC168164	Tenacibaculum phage pT24 DNA, complete genome	105647-105679	9	0.727
NC_016791_1	1.19\|1451522\|34\|NC_016791\|PILER-CR,CRISPRCasFinder,CRT	1451522-1451555	34	NZ_CP025992	Lactobacillus plantarum subsp. plantarum strain LB1-2 plasmid pLB1-2A, complete sequence	3571-3604	11	0.676

1. spacer 2.1|2063138|25|NC_016791|CRISPRCasFinder matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.84

atactatgattgttttaaaataagc	CRISPR spacer
aaactatcattgttttaaaataaat	Protospacer
* ***** ***************..

2. spacer 2.1|2063138|25|NC_016791|CRISPRCasFinder matches to NZ_CP008919 (Providencia stuartii strain ATCC 33672 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.8

atactatgattgttttaaaataagc	CRISPR spacer
tcactatgattgttttaaaatcaca	Protospacer
 .******************* *

3. spacer 1.10|1450926|35|NC_016791|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN831028 (Fusobacterium nucleatum subsp. polymorphum strain NCTC10562 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.8

-tgtacatttatacctatatacctttttaaaaaaaa-----	CRISPR spacer
ctata-atttatacctatataccttt-----aaaaacttta	Protospacer
 *.** ********************     *****

4. spacer 1.9|1450859|35|NC_016791|PILER-CR,CRISPRCasFinder,CRT matches to MH203383 (Ecterococcus phage vB_EfaS_AL3, complete genome) position: , mismatch: 8, identity: 0.771

ctcaat--taattcagccatttacactccctcccctg	CRISPR spacer
--taattgtaattcagccatttacatttcctccaata	Protospacer
  .***  *****************.*.*****  *.

5. spacer 1.9|1450859|35|NC_016791|PILER-CR,CRISPRCasFinder,CRT matches to NC_042126 (Enterococcus phage vB_EfaS_AL3, complete genome) position: , mismatch: 8, identity: 0.771

ctcaat--taattcagccatttacactccctcccctg	CRISPR spacer
--taattgtaattcagccatttacatttcctccaata	Protospacer
  .***  *****************.*.*****  *.

6. spacer 1.5|1450594|33|NC_016791|PILER-CR,CRISPRCasFinder,CRT matches to LC168164 (Tenacibaculum phage pT24 DNA, complete genome) position: , mismatch: 9, identity: 0.727

agaaattatgtaagcggtattggacaccccaga	CRISPR spacer
ggaaattatgtaaacggtataggacatgatgca	Protospacer
.************.****** *****.  .. *

7. spacer 1.19|1451522|34|NC_016791|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025992 (Lactobacillus plantarum subsp. plantarum strain LB1-2 plasmid pLB1-2A, complete sequence) position: , mismatch: 11, identity: 0.676

cctcatcaacaaacgcttgtgctgcatcaaataa	CRISPR spacer
gcttatcaacaaacgcttgagctgctttggtatc	Protospacer
 **.*************** ***** *...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

561166 : 617467

Clostridium_phage(27.59%)

tail,protease,portal,terminase,integrase,holin,tRNA,head

attL 546911:546928|attR 612439:612456

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
546911:546928	attL	NA	NA	NA	NA
WP_014312161.1\|561166_561619_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_014312162.1\|561631_562345_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_014312163.1\|562337_562790_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_014312164.1\|562833_565248_+	ATP-binding protein	NA	NA	NA	NA
WP_014312165.1\|565357_565912_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_014312166.1\|565908_566475_+	zf-HC2 domain-containing protein	NA	NA	NA	NA
WP_014312167.1\|566471_567377_+	hypothetical protein	NA	NA	NA	NA
WP_014312168.1\|567456_567714_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_014312169.1\|567884_569726_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_014312170.1\|569747_570449_+	metallophosphoesterase	NA	NA	NA	NA
WP_014312171.1\|570685_571972_+	trigger factor	NA	NA	NA	NA
WP_004620762.1\|572077_572662_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.9e-51	52.6
WP_014312172.1\|572675_573971_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.1e-145	61.1
WP_014312173.1\|574125_575808_+\|protease	ATP-dependent protease LonB	A0A0R6PGP8	Moraxella_phage	1.0e-15	25.8
WP_014312174.1\|575924_577838_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_014312175.1\|577824_578589_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.5e-33	37.6
WP_014312176.1\|578696_579725_-	sensor histidine kinase	NA	NA	NA	NA
WP_014312177.1\|579721_580396_-	response regulator transcription factor	NA	NA	NA	NA
WP_014312178.1\|580535_581204_+	thermonuclease family protein	V5UN65	Mycobacterium_phage	2.8e-09	33.3
WP_014312179.1\|581461_581653_+\|holin	holin	NA	NA	NA	NA
WP_187288904.1\|581835_582888_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.3e-66	40.9
WP_187288922.1\|583158_583557_-	lytic transglycosylase domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	2.3e-35	60.5
WP_014312182.1\|583973_584279_-	hypothetical protein	NA	NA	NA	NA
WP_014312183.1\|584463_584946_+	DUF402 domain-containing protein	NA	NA	NA	NA
WP_014312184.1\|585015_585873_+	PHP domain-containing protein	NA	NA	NA	NA
WP_014312185.1\|585992_586457_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.9e-42	56.8
WP_014312187.1\|588550_589057_-	ImmA/IrrE family metallo-endopeptidase	A0A0A8WEK1	Clostridium_phage	1.5e-15	30.1
WP_014312188.1\|589214_590630_+	type II restriction endonuclease	NA	NA	NA	NA
WP_014312189.1\|590907_592107_-	DNA (cytosine-5-)-methyltransferase	A0A1P8CX13	Bacillus_phage	1.1e-24	37.4
WP_014312190.1\|592370_593684_+	hypothetical protein	NA	NA	NA	NA
WP_014312191.1\|593683_595633_+	DEAD/DEAH box helicase	A0A2H5BHF5	Acinetobacter_phage	1.4e-11	22.6
WP_014312192.1\|595684_596146_-	hypothetical protein	NA	NA	NA	NA
WP_041700141.1\|596147_597089_-	hypothetical protein	NA	NA	NA	NA
WP_014312194.1\|597273_597621_-	helix-turn-helix transcriptional regulator	A0A0A8WE28	Clostridium_phage	1.6e-11	40.6
WP_014312195.1\|597716_597914_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_050814159.1\|598069_598357_-	helix-turn-helix transcriptional regulator	A0A1L2BY72	Clostridium_phage	1.0e-11	39.3
WP_014312197.1\|598554_598785_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014312198.1\|598799_599024_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014312199.1\|599013_599274_+	hypothetical protein	NA	NA	NA	NA
WP_014312200.1\|599385_599895_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014312201.1\|599910_600048_+	hypothetical protein	NA	NA	NA	NA
WP_014312202.1\|600171_600423_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	1.9e-19	63.8
WP_014312203.1\|600498_601398_+	hypothetical protein	A0A2I7RK25	Vibrio_phage	7.7e-18	39.3
WP_014312204.1\|601390_601591_+	hypothetical protein	NA	NA	NA	NA
WP_014312205.1\|601750_602434_-	hypothetical protein	Q7Y4L3	Streptococcus_phage	4.3e-29	40.5
WP_014312206.1\|602637_603174_+	hypothetical protein	I2E8Y5	Clostridium_phage	6.4e-20	36.4
WP_014312207.1\|603307_603856_+\|integrase	tyrosine-type recombinase/integrase	E2ELN7	Clostridium_phage	1.1e-48	53.8
WP_014312208.1\|604029_604320_+	HNH endonuclease	A0A0S2SXR6	Bacillus_phage	2.0e-20	55.7
WP_014312209.1\|604391_604772_+\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_014312210.1\|604764_606573_+\|terminase	terminase large subunit	A0A0S2SXJ7	Bacillus_phage	1.3e-245	71.5
WP_014312211.1\|606583_607774_+\|portal	phage portal protein	A6XMJ5	Bacillus_virus	1.6e-95	45.4
WP_014312212.1\|607763_608339_+\|head,protease	HK97 family phage prohead protease	A0A0S2SXJ4	Bacillus_phage	2.3e-52	55.9
WP_014312214.1\|609606_609882_+	hypothetical protein	A0A0S2SXS0	Bacillus_phage	4.6e-14	46.2
WP_014312215.1\|609868_610210_+	hypothetical protein	NA	NA	NA	NA
WP_014312216.1\|610206_610578_+	hypothetical protein	A0A2H4JAH8	uncultured_Caudovirales_phage	1.1e-10	39.0
WP_014312217.1\|610574_610898_+	hypothetical protein	Q0H234	Geobacillus_phage	8.9e-17	42.3
WP_014312218.1\|610902_611448_+	hypothetical protein	NA	NA	NA	NA
WP_014312219.1\|611497_611794_+	hypothetical protein	NA	NA	NA	NA
WP_041700354.1\|611796_612063_+	hypothetical protein	NA	NA	NA	NA
WP_014312221.1\|612065_614168_+	hypothetical protein	A0A0A8WET6	Clostridium_phage	9.2e-30	27.7
612439:612456	attR	NA	NA	NA	NA
WP_014312222.1\|614169_615024_+\|tail	phage tail family protein	E2ELJ6	Clostridium_phage	1.9e-45	39.6
WP_014312223.1\|615025_616060_+	siphovirus ReqiPepy6 Gp37-like family protein	H7BUP3	unidentified_phage	8.8e-66	40.8
WP_014312224.1\|616063_617467_+	hypothetical protein	E2ELJ8	Clostridium_phage	3.6e-54	48.3

DBSCAN-SWA_2

1316739 : 1407331

100

Bacillus_phage(25.0%)

tail,protease,portal,terminase,integrase,capsid,tRNA,head

attL 1327884:1327902|attR 1369925:1369943

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014312749.1\|1316739_1317750_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_014312750.1\|1317847_1318417_+	manganese efflux pump	NA	NA	NA	NA
WP_014312751.1\|1318562_1320536_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_014312752.1\|1320535_1320886_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_014312753.1\|1320882_1321578_+	LrgB family protein	NA	NA	NA	NA
WP_014312754.1\|1321654_1322347_+	hypothetical protein	NA	NA	NA	NA
WP_014312755.1\|1322438_1324169_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.1e-141	46.4
WP_014312756.1\|1324227_1325037_-	metallophosphoesterase	NA	NA	NA	NA
WP_014312757.1\|1325410_1326463_+	HD domain-containing protein	NA	NA	NA	NA
WP_014312758.1\|1326518_1327748_-	hypothetical protein	NA	NA	NA	NA
1327884:1327902	attL	NA	NA	NA	NA
WP_014312759.1\|1327938_1328118_-	hypothetical protein	NA	NA	NA	NA
WP_014312760.1\|1328513_1329050_+	XRE family transcriptional regulator	O64078	Bacillus_phage	9.9e-05	35.6
WP_014312762.1\|1330000_1330543_-	DUF5317 domain-containing protein	NA	NA	NA	NA
WP_014312763.1\|1330539_1331151_-	accessory gene regulator B family protein	NA	NA	NA	NA
WP_014312764.1\|1331233_1332226_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4J4W0	uncultured_Caudovirales_phage	1.8e-23	40.6
WP_014312765.1\|1332421_1332712_-	helix-turn-helix transcriptional regulator	Q5YAA4	Bacillus_phage	3.3e-15	49.0
WP_014312766.1\|1332979_1333174_+	DNA-binding protein	NA	NA	NA	NA
WP_014312767.1\|1333185_1333353_+	hypothetical protein	NA	NA	NA	NA
WP_014312768.1\|1333388_1333637_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A0K2CZ86	Paenibacillus_phage	3.1e-17	48.2
WP_014312769.1\|1333688_1333835_+	hypothetical protein	NA	NA	NA	NA
WP_014312770.1\|1333815_1334133_-	hypothetical protein	NA	NA	NA	NA
WP_014312771.1\|1334195_1334366_+	hypothetical protein	NA	NA	NA	NA
WP_014312772.1\|1334389_1334785_+	hypothetical protein	NA	NA	NA	NA
WP_014312773.1\|1334771_1335500_+	hypothetical protein	NA	NA	NA	NA
WP_014312774.1\|1335502_1335763_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_014312775.1\|1335763_1336711_+	DUF4373 domain-containing protein	A0A0H4TKJ7	Bacillus_phage	3.4e-24	43.4
WP_014312776.1\|1336714_1336867_+	hypothetical protein	NA	NA	NA	NA
WP_014312777.1\|1337041_1337896_+	DNA (cytosine-5-)-methyltransferase	A0A0C5ABP5	Bacteriophage	9.1e-69	48.7
WP_041700379.1\|1337907_1338795_+	radical SAM protein	A0A0A7S0B8	Clostridium_phage	2.6e-103	62.2
WP_041700380.1\|1338844_1339564_+	site-specific DNA-methyltransferase	W8EBG5	Geobacillus_phage	4.1e-78	57.9
WP_083826363.1\|1339588_1339810_+	hypothetical protein	NA	NA	NA	NA
WP_014312780.1\|1339835_1340081_+	hypothetical protein	NA	NA	NA	NA
WP_014312782.1\|1340281_1340587_+	DUF1599 domain-containing protein	A0A2H4J4N1	uncultured_Caudovirales_phage	1.1e-21	57.3
WP_014312783.1\|1340576_1340843_+	hypothetical protein	NA	NA	NA	NA
WP_014312784.1\|1340829_1341291_+	hypothetical protein	B4XYT8	Lactobacillus_phage	1.7e-05	45.8
WP_014312785.1\|1341292_1341832_+	hypothetical protein	A0A160DH61	Gordonia_phage	7.4e-08	48.8
WP_148265061.1\|1341851_1342046_+	hypothetical protein	NA	NA	NA	NA
WP_187288907.1\|1342326_1342491_+	hypothetical protein	NA	NA	NA	NA
WP_014312787.1\|1342530_1342740_+	hypothetical protein	NA	NA	NA	NA
WP_014312789.1\|1343093_1343507_+	sigma-70 region 4 domain-containing protein	NA	NA	NA	NA
WP_148265062.1\|1343657_1344395_+\|integrase	tyrosine-type recombinase/integrase	F6K8Q2	Clostridium_phage	4.7e-29	40.7
WP_050814162.1\|1344640_1345120_+	hypothetical protein	A0A0A7RTX1	Clostridium_phage	8.9e-13	32.8
WP_157833833.1\|1345335_1345548_+	hypothetical protein	A0A2H4J3B4	uncultured_Caudovirales_phage	2.3e-05	60.5
WP_014312793.1\|1345663_1346131_+\|terminase	phage terminase small subunit P27 family	A0A0A7RUQ4	Clostridium_phage	7.5e-33	52.7
WP_014312794.1\|1346127_1347852_+\|terminase	terminase	A0A0A7RUM0	Clostridium_phage	1.0e-172	53.4
WP_014312795.1\|1348019_1349300_+\|portal	phage portal protein	A6M949	Geobacillus_virus	1.0e-92	45.2
WP_014312796.1\|1349271_1349547_+	hypothetical protein	NA	NA	NA	NA
WP_014312797.1\|1349521_1350256_+\|protease	Clp protease ClpP	A0A0A7RTN2	Clostridium_phage	7.3e-75	60.8
WP_014312798.1\|1350300_1351455_+\|capsid	phage major capsid protein	A0A288WG01	Bacillus_phage	3.8e-78	44.6
WP_014312799.1\|1351515_1351707_+	hypothetical protein	NA	NA	NA	NA
WP_014312800.1\|1351654_1351942_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J6E5	uncultured_Caudovirales_phage	1.4e-18	51.1
WP_014312801.1\|1351938_1352289_+\|head	phage head closure protein	NA	NA	NA	NA
WP_148265093.1\|1352299_1352728_+	hypothetical protein	NA	NA	NA	NA
WP_014312803.1\|1352730_1353141_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_014312804.1\|1353133_1353838_+\|tail	phage major tail protein, phi13 family	NA	NA	NA	NA
WP_014312805.1\|1353889_1354183_+	hypothetical protein	NA	NA	NA	NA
WP_014312806.1\|1354167_1354497_+	hypothetical protein	NA	NA	NA	NA
WP_014312807.1\|1354667_1358093_+	tape measure protein	H7BVG7	unidentified_phage	9.8e-29	27.2
WP_014312808.1\|1358105_1358951_+\|tail	phage tail family protein	NA	NA	NA	NA
WP_014312809.1\|1358943_1360719_+\|tail	phage tail protein	A0A2K5B298	Erysipelothrix_phage	3.6e-11	22.4
WP_014312810.1\|1360743_1361061_-	hypothetical protein	NA	NA	NA	NA
WP_014312811.1\|1361167_1362832_+	hypothetical protein	NA	NA	NA	NA
WP_014312812.1\|1363119_1363410_+	hypothetical protein	A0A0S2GM64	Bacillus_phage	6.8e-08	38.7
WP_014312813.1\|1363412_1364144_+	C40 family peptidase	NA	NA	NA	NA
WP_014312814.1\|1364143_1364314_+	hypothetical protein	NA	NA	NA	NA
WP_014312815.1\|1364383_1365343_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_014312816.1\|1365484_1366936_-	hypothetical protein	NA	NA	NA	NA
WP_014312817.1\|1367294_1367567_-	hypothetical protein	NA	NA	NA	NA
WP_014312818.1\|1367957_1368251_-	hypothetical protein	NA	NA	NA	NA
WP_014312819.1\|1368474_1369947_+	recombinase family protein	A0A0A7RTP8	Clostridium_phage	1.2e-100	45.9
1369925:1369943	attR	NA	NA	NA	NA
WP_014312820.1\|1370205_1370571_+	hypothetical protein	NA	NA	NA	NA
WP_014312821.1\|1370614_1372015_+	hypothetical protein	NA	NA	NA	NA
WP_014312822.1\|1372056_1374675_+	dynamin family protein	NA	NA	NA	NA
WP_014312823.1\|1374676_1375450_+	hypothetical protein	NA	NA	NA	NA
WP_014312824.1\|1375484_1376657_-	MFS transporter	NA	NA	NA	NA
WP_014312825.1\|1376815_1377271_-	TM2 domain-containing protein	A0A060AN66	Enterococcus_phage	8.4e-05	46.3
WP_014312826.1\|1377350_1378481_-	SPFH domain-containing protein	NA	NA	NA	NA
WP_014312827.1\|1378554_1379223_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_014312828.1\|1379354_1380923_+	hydroxylamine reductase	NA	NA	NA	NA
WP_014312829.1\|1381233_1381653_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_014312830.1\|1381729_1382713_-\|protease	serine protease	A0A0E3T7R5	Bacillus_phage	1.6e-40	63.7
WP_187288908.1\|1382847_1382997_+	hypothetical protein	NA	NA	NA	NA
WP_014312831.1\|1383102_1383921_+	ZIP family metal transporter	NA	NA	NA	NA
WP_014312832.1\|1383928_1384777_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_014312833.1\|1384988_1386734_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.6e-49	29.0
WP_014312834.1\|1386734_1388513_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.8e-53	28.4
WP_014312835.1\|1388597_1389662_+	galactose mutarotase	NA	NA	NA	NA
WP_004617411.1\|1389716_1389893_-	zinc-ribbon domain-containing protein	NA	NA	NA	NA
WP_014312836.1\|1390344_1392312_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	9.0e-19	25.9
WP_014312837.1\|1393017_1394637_-	peptide chain release factor 3	A0A2K9L6L3	Tupanvirus	8.7e-12	30.9
WP_014312838.1\|1394884_1396543_+	nucleoside kinase	NA	NA	NA	NA
WP_014312839.1\|1396643_1396967_+	hypothetical protein	NA	NA	NA	NA
WP_014312840.1\|1396998_1397796_+	RNA methyltransferase	NA	NA	NA	NA
WP_014312841.1\|1397892_1398906_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_014312842.1\|1398983_1401338_+	glycosyl transferase	NA	NA	NA	NA
WP_014312843.1\|1401376_1401724_-	hypothetical protein	NA	NA	NA	NA
WP_014312844.1\|1401745_1402690_-	hypothetical protein	NA	NA	NA	NA
WP_014312845.1\|1402747_1403461_-	hypothetical protein	NA	NA	NA	NA
WP_014312846.1\|1403905_1404937_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.8e-26	33.1
WP_014312847.1\|1404949_1407331_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA

DBSCAN-SWA_3

1473157 : 1491917

Bacillus_phage(50.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014312898.1\|1473157_1474702_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	1.8e-70	33.8
WP_014312899.1\|1474724_1475168_+\|tail	phage tail protein	NA	NA	NA	NA
WP_014312900.1\|1475373_1475742_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_014312901.1\|1475738_1475924_+	hypothetical protein	NA	NA	NA	NA
WP_014312902.1\|1475933_1476407_+\|tail	phage tail protein	NA	NA	NA	NA
WP_014312903.1\|1476433_1477735_+	hypothetical protein	NA	NA	NA	NA
WP_014312904.1\|1477734_1478349_+	hypothetical protein	NA	NA	NA	NA
WP_014312905.1\|1478360_1479407_+	phage late control D family protein	NA	NA	NA	NA
WP_014312906.1\|1479403_1480126_+	type IV secretion protein Rhs	NA	NA	NA	NA
WP_014312907.1\|1480172_1480568_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_014312908.1\|1480632_1481028_+	GPW/gp25 family protein	V5UTT0	Synechococcus_phage	7.8e-07	36.6
WP_014312909.1\|1481027_1484642_+\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_014312910.1\|1484695_1485565_+	hypothetical protein	NA	NA	NA	NA
WP_014312911.1\|1485564_1486302_+\|tail	tail protein	NA	NA	NA	NA
WP_014312912.1\|1486350_1488972_+\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_014312913.1\|1488998_1489175_+	hypothetical protein	NA	NA	NA	NA
WP_014312914.1\|1489235_1491917_+\|tail	tail fiber domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_4

3222204 : 3231458

Streptococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014314323.1\|3222204_3223155_-	aldolase catalytic domain-containing protein	E5EQ69	Micromonas_sp._RCC1109_virus	1.9e-14	25.7
WP_014314324.1\|3223306_3224191_-	ABC transporter permease	NA	NA	NA	NA
WP_014314325.1\|3224184_3225105_-	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	2.3e-17	30.0
WP_014314326.1\|3225659_3226559_+	SDR family oxidoreductase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	2.3e-54	43.0
WP_014314327.1\|3226605_3226947_-	DUF3221 domain-containing protein	NA	NA	NA	NA
WP_014314328.1\|3227036_3227909_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_014314329.1\|3227954_3228716_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.6e-88	61.3
WP_014314330.1\|3228702_3229377_-	Vat family streptogramin A O-acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	4.3e-29	46.3
WP_014314331.1\|3229522_3230524_+	nucleotidyltransferase domain-containing protein	H7BUW2	unidentified_phage	2.7e-88	47.9
WP_014314332.1\|3230612_3231458_-	AraC family transcriptional regulator	A0A1B0RXG1	Streptococcus_phage	1.7e-22	43.6

DBSCAN-SWA_5

4036087 : 4079411

Erysipelothrix_phage(90.0%)

tail,protease,portal,terminase,holin,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014315043.1\|4036087_4037650_-	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	7.6e-239	81.2
WP_014315044.1\|4037651_4038068_-	recombinase	A0A2K5B2B3	Erysipelothrix_phage	1.7e-60	86.1
WP_014315045.1\|4038068_4039634_-	recombinase family protein	A0A2K5B2B2	Erysipelothrix_phage	5.3e-240	79.5
WP_014315046.1\|4039695_4039911_-	hypothetical protein	A0A2K5B2B1	Erysipelothrix_phage	5.1e-21	71.4
WP_014315047.1\|4039966_4041955_-	DNA polymerase	A0A2K5B2B0	Erysipelothrix_phage	0.0e+00	83.2
WP_014315048.1\|4042029_4042581_-	DUF2815 family protein	A0A2K5B2A9	Erysipelothrix_phage	4.8e-95	92.9
WP_014315049.1\|4042586_4043723_-	DUF2800 domain-containing protein	A0A2K5B2A8	Erysipelothrix_phage	7.6e-196	87.0
WP_014315050.1\|4043715_4044033_-	hypothetical protein	A0A2K5B2A7	Erysipelothrix_phage	1.4e-38	81.0
WP_014315051.1\|4044007_4044226_-	hypothetical protein	A0A2I4R673	Erysipelothrix_phage	1.2e-25	77.8
WP_014315052.1\|4044355_4045249_-	N-acetylmuramoyl-L-alanine amidase	H7BVK7	unidentified_phage	1.9e-45	43.7
WP_014315054.1\|4046803_4047244_-\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	4.1e-49	69.6
WP_014315055.1\|4047329_4049801_-	hypothetical protein	NA	NA	NA	NA
WP_014315056.1\|4049812_4050316_-	hypothetical protein	A0A1C9LWP9	Streptomyces_phage	4.8e-09	37.3
WP_014315058.1\|4052271_4053123_-\|tail	phage tail family protein	NA	NA	NA	NA
WP_014315059.1\|4053137_4055558_-	hypothetical protein	A0A2K5B297	Erysipelothrix_phage	2.5e-23	52.0
WP_014315060.1\|4055572_4055713_-	hypothetical protein	NA	NA	NA	NA
WP_014315061.1\|4055760_4056147_-	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	1.5e-42	72.6
WP_014315062.1\|4056158_4056749_-\|tail	phage tail protein	A0A2K5B294	Erysipelothrix_phage	2.2e-74	71.0
WP_014315063.1\|4056752_4057094_-	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	1.9e-30	54.1
WP_041700509.1\|4057090_4057522_-	HK97 gp10 family phage protein	A0A2K5B292	Erysipelothrix_phage	6.7e-44	60.1
WP_014315065.1\|4057527_4057866_-\|head,tail	head-tail adaptor protein	A0A2K5B291	Erysipelothrix_phage	3.6e-29	58.7
WP_014315066.1\|4057867_4058185_-\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	3.1e-38	78.0
WP_014315067.1\|4058207_4058423_-	Head fiber protein	A0A2K5B289	Erysipelothrix_phage	7.0e-18	67.6
WP_014315068.1\|4058435_4059644_-\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	4.7e-196	83.8
WP_014315069.1\|4059659_4060358_-\|protease	Clp protease ClpP	A0A2K5B288	Erysipelothrix_phage	5.5e-96	78.9
WP_014315070.1\|4060354_4061611_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	7.3e-224	90.6
WP_014315071.1\|4061682_4062048_-	hypothetical protein	NA	NA	NA	NA
WP_041700510.1\|4062133_4063735_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	8.0e-292	92.1
WP_014315073.1\|4063849_4064029_-	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_014315074.1\|4064021_4064471_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_014315075.1\|4064506_4065406_-	amidoligase family protein	A0A2K9V489	Faecalibacterium_phage	2.2e-49	39.2
WP_014315077.1\|4065760_4066564_-	hypothetical protein	A0A2K5B280	Erysipelothrix_phage	2.5e-52	46.6
WP_148265105.1\|4066663_4068526_-	DNA cytosine methyltransferase	A0A2K9V3X0	Faecalibacterium_phage	3.0e-32	59.0
WP_014315079.1\|4068518_4069763_-	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	2.7e-194	79.0
WP_014315080.1\|4069737_4070916_-	methionine adenosyltransferase	A0A2K5B278	Erysipelothrix_phage	2.0e-191	85.3
WP_014315081.1\|4070934_4071486_-\|terminase	P27 family phage terminase small subunit	A0A2K5B277	Erysipelothrix_phage	2.4e-94	90.7
WP_014315082.1\|4071589_4071949_-	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	7.5e-57	82.4
WP_014315083.1\|4072084_4072510_-	DUF1492 domain-containing protein	A0A2K5B275	Erysipelothrix_phage	2.5e-67	87.9
WP_014315084.1\|4072506_4072731_-	hypothetical protein	A0A2K5B274	Erysipelothrix_phage	2.2e-27	80.8
WP_014315085.1\|4074081_4074369_-	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	3.6e-38	82.1
WP_014315086.1\|4074518_4076867_-	P-loop ATPase	A0A2K5B271	Erysipelothrix_phage	0.0e+00	87.3
WP_041700511.1\|4076867_4077467_-	hypothetical protein	A0A2I4R669	Erysipelothrix_phage	2.0e-99	83.9
WP_014315088.1\|4077472_4077907_-	DUF4406 domain-containing protein	A0A2K5B270	Erysipelothrix_phage	7.6e-72	89.6
WP_014315089.1\|4077893_4078115_-	hypothetical protein	A0A2K5B269	Erysipelothrix_phage	3.3e-31	84.9
WP_014315090.1\|4078129_4078798_-	Rha family transcriptional regulator	A0A2K5B268	Erysipelothrix_phage	2.7e-100	81.8
WP_014315091.1\|4078862_4079411_-	sigma-70 family RNA polymerase sigma factor	A0A2K5B267	Erysipelothrix_phage	4.6e-58	62.3

DBSCAN-SWA_6

4257037 : 4310473

Clostridium_phage(47.83%)

tail,portal,plate,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014315258.1\|4257037_4257583_-	DUF2313 domain-containing protein	X5J9Z9	Clostridium_phage	1.2e-26	39.0
WP_014315259.1\|4257575_4258631_-\|plate	baseplate J/gp47 family protein	A0A0A8WJT7	Clostridium_phage	4.7e-115	56.1
WP_014315260.1\|4258631_4259033_-	DUF2634 domain-containing protein	A0A0A8WFW6	Clostridium_phage	5.1e-30	47.5
WP_014315261.1\|4259029_4259347_-	DUF2577 domain-containing protein	A0A0A8WJ65	Clostridium_phage	6.7e-09	34.3
WP_014315262.1\|4259339_4260296_-	hydrolase	H7BVH4	unidentified_phage	5.4e-102	55.9
WP_014315263.1\|4260288_4260936_-	LysM peptidoglycan-binding domain-containing protein	A0A0A7RVP5	Clostridium_phage	3.1e-21	31.4
WP_014315264.1\|4260935_4262909_-	hypothetical protein	H7BWD9	unidentified_phage	6.1e-84	39.1
WP_014315265.1\|4263261_4263690_-\|portal	phage portal protein	X5JAB6	Clostridium_phage	7.8e-37	53.4
WP_014315266.1\|4263712_4264183_-\|tail	phage tail tube protein	A0A0A8WJ62	Clostridium_phage	1.2e-57	69.5
WP_014315267.1\|4264204_4265506_-\|tail	phage tail sheath family protein	X5JAJ1	Clostridium_phage	3.6e-149	59.1
WP_014315268.1\|4265621_4266056_-	hypothetical protein	A0A0A8WJT3	Clostridium_phage	4.0e-20	35.5
WP_014315269.1\|4266206_4266662_-	hypothetical protein	NA	NA	NA	NA
WP_014315270.1\|4266900_4267227_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014315271.1\|4267514_4267946_-	RNA-binding protein S1	NA	NA	NA	NA
WP_014315272.1\|4268065_4268344_-	septum formation initiator family protein	NA	NA	NA	NA
WP_014315273.1\|4268420_4268960_-	spore cortex biosynthesis protein YabQ	NA	NA	NA	NA
WP_014315274.1\|4268983_4269268_-	sporulation protein YabP	NA	NA	NA	NA
WP_014315275.1\|4269398_4269638_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_004618565.1\|4269776_4270052_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	1.9e-20	57.3
WP_014315276.1\|4270088_4270883_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_014315277.1\|4271005_4271377_-	single-stranded DNA-binding protein	Q8SBL5	Clostridium_phage	2.1e-17	43.2
WP_014315278.1\|4271735_4272290_-	stage V sporulation protein T	A0A2I7SC16	Paenibacillus_phage	5.6e-11	70.6
WP_014315279.1\|4272491_4273583_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_014315280.1\|4273667_4277192_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_014315281.1\|4277213_4277783_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_014315282.1\|4277881_4278841_-	ribose-phosphate diphosphokinase	A0A2K9L8D8	Tupanvirus	6.3e-42	35.4
WP_014315283.1\|4278880_4280053_-	UDP-N-acetylglucosamine pyrophosphorylase	NA	NA	NA	NA
WP_014315284.1\|4280248_4280500_-	septation regulator SpoVG	NA	NA	NA	NA
WP_014315285.1\|4280627_4281440_-	pur operon repressor	NA	NA	NA	NA
WP_014315286.1\|4281724_4283128_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_014315287.1\|4283462_4283891_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_014315288.1\|4283996_4285148_-	phosphodiester glycosidase family protein	NA	NA	NA	NA
WP_014315289.1\|4285134_4285524_-	rod-binding protein	NA	NA	NA	NA
WP_014315290.1\|4285541_4286354_-	flagellar hook-basal body protein	NA	NA	NA	NA
WP_014315291.1\|4286403_4287201_-	flagellar hook-basal body protein	NA	NA	NA	NA
WP_187288899.1\|4287335_4288373_-	rod shape-determining protein	NA	NA	NA	NA
WP_014315293.1\|4288547_4289738_-	[FeFe] hydrogenase H-cluster maturation GTPase HydF	NA	NA	NA	NA
WP_014315294.1\|4289754_4291167_-	[FeFe] hydrogenase H-cluster radical SAM maturase HydG	NA	NA	NA	NA
WP_014315295.1\|4291226_4291472_-	iron-only hydrogenase system regulator	NA	NA	NA	NA
WP_014315296.1\|4291774_4292167_+	hypothetical protein	NA	NA	NA	NA
WP_014315297.1\|4292184_4292352_-	hypothetical protein	NA	NA	NA	NA
WP_014312332.1\|4292595_4294185_-\|transposase	IS1182 family transposase	Q9MBP7	Staphylococcus_prophage	8.2e-63	31.9
WP_014315298.1\|4294420_4295626_-	cation:proton antiporter	NA	NA	NA	NA
WP_014315299.1\|4295625_4296117_-	cation:proton antiporter regulatory subunit	NA	NA	NA	NA
WP_014315300.1\|4296828_4298133_-	carbohydrate-binding protein	NA	NA	NA	NA
WP_004618537.1\|4298341_4298590_-	sporulation transcriptional regulator SpoIIID	M9Q261	Clostridium_phage	3.7e-15	52.0
WP_014315301.1\|4298774_4299338_-	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_014315302.1\|4299455_4300670_+	glycosyl transferase	A0A0E3URP0	Lambdina_fiscellaria_nucleopolyhedrovirus	6.5e-12	24.3
WP_014315303.1\|4300694_4301405_+	hydrolase	NA	NA	NA	NA
WP_014315304.1\|4301493_4302771_-\|tRNA	serine--tRNA ligase	A0A1V0SK42	Klosneuvirus	7.0e-49	29.6
WP_014315305.1\|4303120_4303681_-	hydrolase	NA	NA	NA	NA
WP_014315306.1\|4303720_4304896_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_014315307.1\|4305145_4306078_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	3.8e-92	58.6
WP_014315308.1\|4306253_4307048_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA
WP_014315309.1\|4307049_4307586_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	A0A1V0QGA1	Shearwaterpox_virus	2.1e-26	41.0
WP_014315310.1\|4307642_4308680_+	[FeFe] hydrogenase H-cluster radical SAM maturase HydE	NA	NA	NA	NA
WP_014315311.1\|4308905_4309562_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	1.3e-54	50.7
WP_148265090.1\|4309582_4310473_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	3.0e-99	75.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016791

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection