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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_016826 Streptococcus infantarius subsp. infantarius CJ18, complete sequence 2 crisprs DEDDh,csa3,cas3,DinG,csm6,csn2,cas1,cas9 0 10 10 0
NC_016837 Streptococcus infantarius subsp. infantarius CJ18 plasmid pSICJ18-1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NC_016826
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016826_1 178363-178458 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_016826_2 1273106-1273801 TypeII II-A
10 spacers
csn2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_016826_2 2.5|1273408|29|NC_016826|CRISPRCasFinder 1273408-1273436 29 MK448931 Streptococcus phage Javan414, complete genome 20008-20036 0 1.0
NC_016826_2 2.15|1273408|30|NC_016826|CRT,PILER-CR 1273408-1273437 30 MK448931 Streptococcus phage Javan414, complete genome 20007-20036 0 1.0
NC_016826_2 2.7|1273540|29|NC_016826|CRISPRCasFinder 1273540-1273568 29 MK448877 Streptococcus phage Javan220, complete genome 33531-33559 2 0.931
NC_016826_2 2.17|1273540|30|NC_016826|CRT,PILER-CR 1273540-1273569 30 MK448877 Streptococcus phage Javan220, complete genome 33531-33560 2 0.933
NC_016826_2 2.1|1273143|30|NC_016826|CRISPRCasFinder 1273143-1273172 30 MK448931 Streptococcus phage Javan414, complete genome 17500-17529 4 0.867
NC_016826_2 2.11|1273143|31|NC_016826|CRT 1273143-1273173 31 MK448931 Streptococcus phage Javan414, complete genome 17499-17529 4 0.871
NC_016826_2 2.16|1273474|30|NC_016826|CRT,PILER-CR 1273474-1273503 30 NC_010523 Tetragenococcus halophilus plasmid pHDC DNA, complete sequence 23620-23649 6 0.8
NC_016826_2 2.16|1273474|30|NC_016826|CRT,PILER-CR 1273474-1273503 30 NC_015257 Tetragenococcus halophilus plasmid pHDC-I DNA, complete sequence 19977-20006 6 0.8
NC_016826_2 2.16|1273474|30|NC_016826|CRT,PILER-CR 1273474-1273503 30 NC_024991 Tetragenococcus halophilus plasmid pTDC-B DNA, complete sequence, strain: TyrB 440-469 6 0.8
NC_016826_2 2.16|1273474|30|NC_016826|CRT,PILER-CR 1273474-1273503 30 NC_024990 Tetragenococcus halophilus plasmid pTDC-A DNA, complete sequence, strain: TyrA 440-469 6 0.8
NC_016826_2 2.6|1273474|29|NC_016826|CRISPRCasFinder 1273474-1273502 29 NC_015257 Tetragenococcus halophilus plasmid pHDC-I DNA, complete sequence 19977-20005 7 0.759
NC_016826_2 2.6|1273474|29|NC_016826|CRISPRCasFinder 1273474-1273502 29 NC_024991 Tetragenococcus halophilus plasmid pTDC-B DNA, complete sequence, strain: TyrB 440-468 7 0.759
NC_016826_2 2.6|1273474|29|NC_016826|CRISPRCasFinder 1273474-1273502 29 NC_010523 Tetragenococcus halophilus plasmid pHDC DNA, complete sequence 23621-23649 7 0.759
NC_016826_2 2.6|1273474|29|NC_016826|CRISPRCasFinder 1273474-1273502 29 NC_024990 Tetragenococcus halophilus plasmid pTDC-A DNA, complete sequence, strain: TyrA 440-468 7 0.759
NC_016826_2 2.5|1273408|29|NC_016826|CRISPRCasFinder 1273408-1273436 29 NC_041979 Escherichia coli O157 typing phage 1, complete genome 549-577 8 0.724
NC_016826_2 2.5|1273408|29|NC_016826|CRISPRCasFinder 1273408-1273436 29 NC_012749 Enterobacteria phage WV8, complete genome 41176-41204 8 0.724
NC_016826_2 2.5|1273408|29|NC_016826|CRISPRCasFinder 1273408-1273436 29 LC519489 Escherichia phage SP22 DNA, complete genome 41597-41625 8 0.724
NC_016826_2 2.5|1273408|29|NC_016826|CRISPRCasFinder 1273408-1273436 29 EU877232 Enterobacteria phage WV8, complete sequence 41176-41204 8 0.724
NC_016826_2 2.5|1273408|29|NC_016826|CRISPRCasFinder 1273408-1273436 29 KP869113 Escherichia coli O157 typing phage 15, partial genome 18017-18045 8 0.724
NC_016826_2 2.5|1273408|29|NC_016826|CRISPRCasFinder 1273408-1273436 29 KP869106 Escherichia coli O157 typing phage 8, partial genome 60027-60055 8 0.724
NC_016826_2 2.5|1273408|29|NC_016826|CRISPRCasFinder 1273408-1273436 29 KP869109 Escherichia coli O157 typing phage 11, complete genome 39207-39235 8 0.724
NC_016826_2 2.5|1273408|29|NC_016826|CRISPRCasFinder 1273408-1273436 29 KP869110 Escherichia coli O157 typing phage 12, complete genome 75018-75046 8 0.724
NC_016826_2 2.10|1273736|29|NC_016826|CRISPRCasFinder 1273736-1273764 29 NZ_CP028945 Vibrio sp. dhg plasmid unnamed1, complete sequence 42116-42144 8 0.724
NC_016826_2 2.15|1273408|30|NC_016826|CRT,PILER-CR 1273408-1273437 30 NC_012749 Enterobacteria phage WV8, complete genome 41176-41205 8 0.733
NC_016826_2 2.15|1273408|30|NC_016826|CRT,PILER-CR 1273408-1273437 30 LC519489 Escherichia phage SP22 DNA, complete genome 41597-41626 8 0.733
NC_016826_2 2.15|1273408|30|NC_016826|CRT,PILER-CR 1273408-1273437 30 EU877232 Enterobacteria phage WV8, complete sequence 41176-41205 8 0.733
NC_016826_2 2.15|1273408|30|NC_016826|CRT,PILER-CR 1273408-1273437 30 KP869106 Escherichia coli O157 typing phage 8, partial genome 60027-60056 8 0.733
NC_016826_2 2.15|1273408|30|NC_016826|CRT,PILER-CR 1273408-1273437 30 KP869109 Escherichia coli O157 typing phage 11, complete genome 39207-39236 8 0.733
NC_016826_2 2.15|1273408|30|NC_016826|CRT,PILER-CR 1273408-1273437 30 NC_041979 Escherichia coli O157 typing phage 1, complete genome 548-577 8 0.733
NC_016826_2 2.15|1273408|30|NC_016826|CRT,PILER-CR 1273408-1273437 30 KP869113 Escherichia coli O157 typing phage 15, partial genome 18016-18045 8 0.733
NC_016826_2 2.15|1273408|30|NC_016826|CRT,PILER-CR 1273408-1273437 30 KP869110 Escherichia coli O157 typing phage 12, complete genome 75017-75046 8 0.733
NC_016826_2 2.20|1273736|30|NC_016826|CRT,PILER-CR 1273736-1273765 30 NZ_CP028945 Vibrio sp. dhg plasmid unnamed1, complete sequence 42115-42144 9 0.7

1. spacer 2.5|1273408|29|NC_016826|CRISPRCasFinder matches to MK448931 (Streptococcus phage Javan414, complete genome) position: , mismatch: 0, identity: 1.0

actgtttcagcaacaatgctaatcaaatc	CRISPR spacer
actgtttcagcaacaatgctaatcaaatc	Protospacer
*****************************

2. spacer 2.15|1273408|30|NC_016826|CRT,PILER-CR matches to MK448931 (Streptococcus phage Javan414, complete genome) position: , mismatch: 0, identity: 1.0

actgtttcagcaacaatgctaatcaaatca	CRISPR spacer
actgtttcagcaacaatgctaatcaaatca	Protospacer
******************************

3. spacer 2.7|1273540|29|NC_016826|CRISPRCasFinder matches to MK448877 (Streptococcus phage Javan220, complete genome) position: , mismatch: 2, identity: 0.931

gtattaagcgcatttatcaccgcaagtca	CRISPR spacer
gtactaagcgcatttatcaccgcaagcca	Protospacer
***.**********************.**

4. spacer 2.17|1273540|30|NC_016826|CRT,PILER-CR matches to MK448877 (Streptococcus phage Javan220, complete genome) position: , mismatch: 2, identity: 0.933

gtattaagcgcatttatcaccgcaagtcaa	CRISPR spacer
gtactaagcgcatttatcaccgcaagccaa	Protospacer
***.**********************.***

5. spacer 2.1|1273143|30|NC_016826|CRISPRCasFinder matches to MK448931 (Streptococcus phage Javan414, complete genome) position: , mismatch: 4, identity: 0.867

cacatactttgcgctatcattaccagacaa	CRISPR spacer
aacatactttgcgctatcgttgccagacac	Protospacer
 *****************.**.******* 

6. spacer 2.11|1273143|31|NC_016826|CRT matches to MK448931 (Streptococcus phage Javan414, complete genome) position: , mismatch: 4, identity: 0.871

cacatactttgcgctatcattaccagacaat	CRISPR spacer
aacatactttgcgctatcgttgccagacact	Protospacer
 *****************.**.******* *

7. spacer 2.16|1273474|30|NC_016826|CRT,PILER-CR matches to NC_010523 (Tetragenococcus halophilus plasmid pHDC DNA, complete sequence) position: , mismatch: 6, identity: 0.8

catgagatgcttatcgtgactaaaagtgta-	CRISPR spacer
aatgatatgcttatcgtgac-aaaattagac	Protospacer
 **** ************** **** *. * 

8. spacer 2.16|1273474|30|NC_016826|CRT,PILER-CR matches to NC_015257 (Tetragenococcus halophilus plasmid pHDC-I DNA, complete sequence) position: , mismatch: 6, identity: 0.8

catgagatgcttatcgtgactaaaagtgta-	CRISPR spacer
aatgatatgcttatcgtgac-aaaattagac	Protospacer
 **** ************** **** *. * 

9. spacer 2.16|1273474|30|NC_016826|CRT,PILER-CR matches to NC_024991 (Tetragenococcus halophilus plasmid pTDC-B DNA, complete sequence, strain: TyrB) position: , mismatch: 6, identity: 0.8

catgagatgcttatcgtgactaaaagtgta-	CRISPR spacer
aatgatatgcttatcgtgac-aaaattagac	Protospacer
 **** ************** **** *. * 

10. spacer 2.16|1273474|30|NC_016826|CRT,PILER-CR matches to NC_024990 (Tetragenococcus halophilus plasmid pTDC-A DNA, complete sequence, strain: TyrA) position: , mismatch: 6, identity: 0.8

catgagatgcttatcgtgactaaaagtgta-	CRISPR spacer
aatgatatgcttatcgtgac-aaaattagac	Protospacer
 **** ************** **** *. * 

11. spacer 2.6|1273474|29|NC_016826|CRISPRCasFinder matches to NC_015257 (Tetragenococcus halophilus plasmid pHDC-I DNA, complete sequence) position: , mismatch: 7, identity: 0.759

catgagatgcttatcgtgactaaaagtgt	CRISPR spacer
aatgatatgcttatcgtgacaaaattaga	Protospacer
 **** ************** ***   * 

12. spacer 2.6|1273474|29|NC_016826|CRISPRCasFinder matches to NC_024991 (Tetragenococcus halophilus plasmid pTDC-B DNA, complete sequence, strain: TyrB) position: , mismatch: 7, identity: 0.759

catgagatgcttatcgtgactaaaagtgt	CRISPR spacer
aatgatatgcttatcgtgacaaaattaga	Protospacer
 **** ************** ***   * 

13. spacer 2.6|1273474|29|NC_016826|CRISPRCasFinder matches to NC_010523 (Tetragenococcus halophilus plasmid pHDC DNA, complete sequence) position: , mismatch: 7, identity: 0.759

catgagatgcttatcgtgactaaaagtgt	CRISPR spacer
aatgatatgcttatcgtgacaaaattaga	Protospacer
 **** ************** ***   * 

14. spacer 2.6|1273474|29|NC_016826|CRISPRCasFinder matches to NC_024990 (Tetragenococcus halophilus plasmid pTDC-A DNA, complete sequence, strain: TyrA) position: , mismatch: 7, identity: 0.759

catgagatgcttatcgtgactaaaagtgt	CRISPR spacer
aatgatatgcttatcgtgacaaaattaga	Protospacer
 **** ************** ***   * 

15. spacer 2.5|1273408|29|NC_016826|CRISPRCasFinder matches to NC_041979 (Escherichia coli O157 typing phage 1, complete genome) position: , mismatch: 8, identity: 0.724

actgtttcagcaacaatgctaatcaaatc	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaa	Protospacer
. ** ************* ******    

16. spacer 2.5|1273408|29|NC_016826|CRISPRCasFinder matches to NC_012749 (Enterobacteria phage WV8, complete genome) position: , mismatch: 8, identity: 0.724

actgtttcagcaacaatgctaatcaaatc	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaa	Protospacer
. ** ************* ******    

17. spacer 2.5|1273408|29|NC_016826|CRISPRCasFinder matches to LC519489 (Escherichia phage SP22 DNA, complete genome) position: , mismatch: 8, identity: 0.724

actgtttcagcaacaatgctaatcaaatc	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaa	Protospacer
. ** ************* ******    

18. spacer 2.5|1273408|29|NC_016826|CRISPRCasFinder matches to EU877232 (Enterobacteria phage WV8, complete sequence) position: , mismatch: 8, identity: 0.724

actgtttcagcaacaatgctaatcaaatc	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaa	Protospacer
. ** ************* ******    

19. spacer 2.5|1273408|29|NC_016826|CRISPRCasFinder matches to KP869113 (Escherichia coli O157 typing phage 15, partial genome) position: , mismatch: 8, identity: 0.724

actgtttcagcaacaatgctaatcaaatc	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaa	Protospacer
. ** ************* ******    

20. spacer 2.5|1273408|29|NC_016826|CRISPRCasFinder matches to KP869106 (Escherichia coli O157 typing phage 8, partial genome) position: , mismatch: 8, identity: 0.724

actgtttcagcaacaatgctaatcaaatc	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaa	Protospacer
. ** ************* ******    

21. spacer 2.5|1273408|29|NC_016826|CRISPRCasFinder matches to KP869109 (Escherichia coli O157 typing phage 11, complete genome) position: , mismatch: 8, identity: 0.724

actgtttcagcaacaatgctaatcaaatc	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaa	Protospacer
. ** ************* ******    

22. spacer 2.5|1273408|29|NC_016826|CRISPRCasFinder matches to KP869110 (Escherichia coli O157 typing phage 12, complete genome) position: , mismatch: 8, identity: 0.724

actgtttcagcaacaatgctaatcaaatc	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaa	Protospacer
. ** ************* ******    

23. spacer 2.10|1273736|29|NC_016826|CRISPRCasFinder matches to NZ_CP028945 (Vibrio sp. dhg plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

accatttgaagaatgaatattggatgttg	CRISPR spacer
cgaatttgaagaaggaatattcgatggat	Protospacer
   ********** ******* ****   

24. spacer 2.15|1273408|30|NC_016826|CRT,PILER-CR matches to NC_012749 (Enterobacteria phage WV8, complete genome) position: , mismatch: 8, identity: 0.733

actgtttcagcaacaatgctaatcaaatca	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaaa	Protospacer
. ** ************* ******    *

25. spacer 2.15|1273408|30|NC_016826|CRT,PILER-CR matches to LC519489 (Escherichia phage SP22 DNA, complete genome) position: , mismatch: 8, identity: 0.733

actgtttcagcaacaatgctaatcaaatca	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaaa	Protospacer
. ** ************* ******    *

26. spacer 2.15|1273408|30|NC_016826|CRT,PILER-CR matches to EU877232 (Enterobacteria phage WV8, complete sequence) position: , mismatch: 8, identity: 0.733

actgtttcagcaacaatgctaatcaaatca	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaaa	Protospacer
. ** ************* ******    *

27. spacer 2.15|1273408|30|NC_016826|CRT,PILER-CR matches to KP869106 (Escherichia coli O157 typing phage 8, partial genome) position: , mismatch: 8, identity: 0.733

actgtttcagcaacaatgctaatcaaatca	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaaa	Protospacer
. ** ************* ******    *

28. spacer 2.15|1273408|30|NC_016826|CRT,PILER-CR matches to KP869109 (Escherichia coli O157 typing phage 11, complete genome) position: , mismatch: 8, identity: 0.733

actgtttcagcaacaatgctaatcaaatca	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaaa	Protospacer
. ** ************* ******    *

29. spacer 2.15|1273408|30|NC_016826|CRT,PILER-CR matches to NC_041979 (Escherichia coli O157 typing phage 1, complete genome) position: , mismatch: 8, identity: 0.733

actgtttcagcaacaatgctaatcaaatca	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaaa	Protospacer
. ** ************* ******    *

30. spacer 2.15|1273408|30|NC_016826|CRT,PILER-CR matches to KP869113 (Escherichia coli O157 typing phage 15, partial genome) position: , mismatch: 8, identity: 0.733

actgtttcagcaacaatgctaatcaaatca	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaaa	Protospacer
. ** ************* ******    *

31. spacer 2.15|1273408|30|NC_016826|CRT,PILER-CR matches to KP869110 (Escherichia coli O157 typing phage 12, complete genome) position: , mismatch: 8, identity: 0.733

actgtttcagcaacaatgctaatcaaatca	CRISPR spacer
ggtggttcagcaacaatggtaatcaccaaa	Protospacer
. ** ************* ******    *

32. spacer 2.20|1273736|30|NC_016826|CRT,PILER-CR matches to NZ_CP028945 (Vibrio sp. dhg plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

accatttgaagaatgaatattggatgttgc	CRISPR spacer
cgaatttgaagaaggaatattcgatggatt	Protospacer
   ********** ******* ****   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 366057 : 376719 11 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 396843 : 406151 8 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_3 589826 : 600009 10 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 792424 : 829694 51 Streptococcus_phage(72.5%) holin,capsid,portal,transposase,terminase,integrase,head,tail attL 792344:792387|attR 830068:830111
DBSCAN-SWA_5 857282 : 865793 8 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_6 903185 : 913350 10 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_7 1127928 : 1148058 19 Bacillus_phage(42.86%) tRNA NA
DBSCAN-SWA_8 1500762 : 1510613 12 Streptococcus_phage(75.0%) NA NA
DBSCAN-SWA_9 1713027 : 1802369 67 Bacillus_phage(41.67%) bacteriocin,transposase,tRNA NA
DBSCAN-SWA_10 1963966 : 1972163 9 Staphylococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage