CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016907	Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence	0 crisprs	csa3	0	0	0	0
NC_016906	Gordonia polyisoprenivorans VH2, complete sequence	4 crisprs	casR,csa3,cas3,WYL,DinG,DEDDh,cas4,cas2,cas1,csb2gr5,cas7,cas8u1,c2c9_V-U4,RT	1	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016906_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016906_1

1389980-1390151

Orphan

Consensus_repeat	Method
NCGATGGTCGAGGTNCNNGNG	CRT

4 spacers

The CRISPR arrays of NC_016906_1

>merge|NC_016906|1|1389980-1390151|CRT
CCGGTGGTGACGTTCCGTTGGCGCCGACGCCCTTCGACCGATGGTCGAGGTTCCCGTGGCGTCGGTTCCTTTGGATCGATGGTCGAGGTTCCCGTGGCGCCGCCGCCGTTCAACCGATGGTCGAGGTTCCCGTGGCGCCGGTTTCTTTGGATCGATGGTCGAGGTGCGAGGA

>NC_016906|1|1|1389980-1390151|CRT
CCGGTGGTGACGTTCCGTTG	GCGCCGACGCCCTTCGAC
CGATGGTCGAGGTTCCCGTG	GCGTCGGTTCCTTTGGAT
CGATGGTCGAGGTTCCCGTG	GCGCCGCCGCCGTTCAAC
CGATGGTCGAGGTTCCCGTG	GCGCCGGTTTCTTTGGAT
CGATGGTCGAGGTGCGAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016906.1\|WP_014359150.1\|1390420_1391665_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
NC_016906.1\|WP_014359149.1\|1387955_1389959_+\|acetoacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|235134
NC_016906.1\|WP_014359158.1\|1400888_1401755_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673
NC_016906.1\|WP_085950243.1\|1379859_1381401_+\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
NC_016906.1\|WP_014359151.1\|1391819_1393487_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378390
NC_016906.1\|WP_020172141.1\|1373965_1374424_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_016906.1\|WP_014359142.1\|1376040_1379577_-\|indolepyruvate-ferredoxin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|237279
NC_016906.1\|WP_014359147.1\|1385354_1386251_+\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NC_016906.1\|WP_014359152.1\|1393584_1394220_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NC_016906.1\|WP_014359155.1\|1396745_1399475_-\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|237512
NC_016906.1\|WP_014359154.1\|1395953_1396700_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_016906.1\|WP_014359145.1\|1383636_1384782_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173847
NC_016906.1\|WP_014359144.1\|1381490_1383596_+\|acetyl/propionyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl\|CDD\|227111
NC_016906.1\|WP_043457012.1\|1386282_1387959_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236236
NC_016906.1\|WP_014359156.1\|1399530_1399758_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
NC_016906.1\|WP_014359146.1\|1384778_1385297_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239535
NC_016906.1\|WP_014359153.1\|1394216_1395821_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_016906.1\|WP_014359140.1\|1374420_1374876_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319924
NC_016906.1\|WP_014359157.1\|1399769_1400531_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NC_016906.1\|WP_014359159.1\|1401761_1402820_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270278

Protein	Function_ID	Function_description	E-value
NC_016906.1\|WP_014359150.1\|1390420_1391665_+\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	2.63765e-07
NC_016906.1\|WP_014359149.1\|1387955_1389959_+\|acetoacetate--CoA-ligase	gnl\|CDD\|235134	PRK03584, PRK03584, acetoacetate--CoA ligase.	0
NC_016906.1\|WP_014359158.1\|1400888_1401755_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.06341e-59
NC_016906.1\|WP_085950243.1\|1379859_1381401_+\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NC_016906.1\|WP_014359151.1\|1391819_1393487_+\|hypothetical-protein	gnl\|CDD\|378390	pfam10101, DUF2339, Predicted membrane protein (DUF2339). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00863721
NC_016906.1\|WP_020172141.1\|1373965_1374424_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	7.021e-27
NC_016906.1\|WP_014359142.1\|1376040_1379577_-\|indolepyruvate-ferredoxin-oxidoreductase-family-protein	gnl\|CDD\|237279	PRK13030, PRK13030, indolepyruvate ferredoxin oxidoreductase family protein.	0
NC_016906.1\|WP_014359147.1\|1385354_1386251_+\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	3.29948e-71
NC_016906.1\|WP_014359152.1\|1393584_1394220_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	1.04945e-87
NC_016906.1\|WP_014359155.1\|1396745_1399475_-\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|237512	PRK13800, PRK13800, fumarate reductase/succinate dehydrogenase flavoprotein subunit.	0
NC_016906.1\|WP_014359154.1\|1395953_1396700_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	4.33148e-17
NC_016906.1\|WP_014359145.1\|1383636_1384782_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	5.87671e-157
NC_016906.1\|WP_014359144.1\|1381490_1383596_+\|acetyl/propionyl-CoA-carboxylase-subunit-alpha	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NC_016906.1\|WP_043457012.1\|1386282_1387959_+\|AMP-binding-protein	gnl\|CDD\|236236	PRK08315, PRK08315, AMP-binding domain protein; Validated.	0
NC_016906.1\|WP_014359156.1\|1399530_1399758_-\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	3.94636e-09
NC_016906.1\|WP_014359146.1\|1384778_1385297_+\|MaoC-family-dehydratase	gnl\|CDD\|239535	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.	3.00254e-67
NC_016906.1\|WP_014359153.1\|1394216_1395821_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_016906.1\|WP_014359140.1\|1374420_1374876_+\|VOC-family-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	9.08245e-41
NC_016906.1\|WP_014359157.1\|1399769_1400531_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	8.21208e-44
NC_016906.1\|WP_014359159.1\|1401761_1402820_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270278	cd13560, PBP2_taurine, Taurine-binding periplasmic protein; the type 2 periplasmic binding protein fold. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.83908e-85

>NC_016906.1|WP_014359149.1|1387955_1389959_+|acetoacetate--CoA-ligase
MTDGVGSVITTDKRSQMDEFVDAVSRQYGIDVSGYPELWAWSTSEPAAFWRSVWEFFELSEIAAPLAAGDAAVLASADMPGASWFPEIRLNYVDQVLRHARAVETGAAADRAAVVGIGESGDRTAIAWSELPQMIGALAATLADLGVGVGDVVAAYLPDVPEAVIAFLATASLGAIWSGCGQDYAPEGASARLGQLHPKVLFSADGYRYNGKDIDKTSDSAELAAALPELTGHIVVGGTDHRSESGPRVLSYASAISGAATVTPVPVAFDHPLWVLFSSGTTGRPKGIVHGHGGVVVEHLKAAALHADLDESDVFFWQTALSWMMWNFQIAGLLCGSTIVCYSGSPLYPDADRLWQIVAAEKVTYFGTSPGQLQASRKAGLVPGRDHDLSALRTIGSTGSSLAGDLFEWIDDNVAHGLPVSSISGGTDVVTAFAGGSVGEPVVPGELSVRYLGVALQSWAPDCTPVIDEVGEMVITTPMPSMPVGFWNDPDGSRYRAAYFEHEWSSVGPTTPVWRHGDWVTVTDRGSLIIHGRSDATLNRHGIRMGSADIYEVVESIDEIAEAFVLGVDGPDGAYWMPLFVTLVPGAELDDDLRTRVVAEIRSRLSPRHVPDELIVAPAIPHTRTGKKLEVPVTSVLAGRSVDIDPRSVDDYSLIAWYEEQGAKHAW
>NC_016906.1|WP_043457012.1|1386282_1387959_+|AMP-binding-protein
MTESVSTRDDSELSYARGDAAPPLLTETIGATLARITERHGDRMALIDAPTGAQWTYAEFRRDVLALAAGLCRLGVAAGDRVGLWSPNRAEWVLTQYATAEIGAILVNLNPAYRQHEIEYALTQSGASVVVAAERYKDSDYAGMLAAARPAAPDLREVVLFESPQWAELTAQPTPDELAAVADRAAGLTADDPINIQYTSGTTGFPKGATLSHRNIGNNGYLVGELLDYSADDRICIPVPFYHCFGMVMGNLAATSHGATMVIPSPTFDPEAALRAVADHKCTSLYGVPTMFIAELALLDSGAEFDLSTLRTGIMAGSPCPEHVMRQVVDRMHMGQVSICYGMTETSPVSTQTRMDDPLELRVGTVGRVGPHLEVKVIDPVSGETLRRGETGEFCTRGYSVMSGYWNQPDKSAEVLIPEPTDPQGSPWMRTGDLAVMDPNGYVRITGRIKDMVIRGGENIYPREIEEFLYTHPDILDAQVIGVPDEKYGEELMAWIRLRDGASELTADDVREFATGKIARHKIPRFVHVVKEFPMTVTGKVRKVQMREESVEILGTLR
>NC_016906.1|WP_014359147.1|1385354_1386251_+|CoA-ester-lyase
MTLPVAESFGNAWAPAGPAMLFCPADRPERYQKAADRADVVILDLEDAVAPENRVAAREALIAHPLDPDRTVVRINPAGTGDYRRDLAALSDTNYRVVMQAKAETVESITETALQTIALIETPTGVVRVDDIAAGVNCIGLMWGAEDLVAGLGGESSRFGPDEPRSGTYRDVARYARSAVRLAAAASGKFAVDSVHIDFRDIDGLRDEVTDAVALGYAATACIHPSQVDIIRAGYSPSDEELQWARRVIDGAAEFGGGVFSIDGQMIDGPVFRQAEAVLSRAAASEASSTETSPAPTT
>NC_016906.1|WP_014359146.1|1384778_1385297_+|MaoC-family-dehydratase
MSENAEATSTPVRVVQRGLWFEEFAEGTIYEHRPGRTVTEADNVLFTTLTMNTQALHLDAAWSATQPGFGGQRLINSMFTLSTIVGLSVAQLTQGTLVANLGFSEVAFPAPLFAGDTLYAETECTGKRESRSRPGEGVVHLTHIGRNQDGVIVARAARATLVRRRPSDSSPT
>NC_016906.1|WP_014359145.1|1383636_1384782_+|acyl-CoA-dehydrogenase-family-protein
MELTQEYTDLIATVRDFAQSVVAPVSAKHDAEHSFPYDVIAQMGKMGLFGLPFPEEEGGMGGDYFALALALEELGKIDQSVAITLEAGVSLGAMPIHKYGTPEQKERWLPDLTAGRALAGFGLTEPGAGSDAGATATTARDDGDSWIINGAKQFITNSGTDITSLVTVTAVTGVKDNGRKEISTIVVPSGTPGFVAEPAYNKVGWNASDTHPLTFTDVRVPKENLLGERGRGYANFLSILDEGRIAIAALATGVAQGCVDESVKYAKERQSFGKPIGEYQSVSFAIARMEARAHVARTAYYDAAAKMLAGKPFKKEASIAKMIASEAAMDNARMATQIHGGYGFMNEYPVARHYRDSKILEIGEGTTEVQLMLIARELGFS
>NC_016906.1|WP_014359144.1|1381490_1383596_+|acetyl/propionyl-CoA-carboxylase-subunit-alpha
MVTPIRTVLVANRGEIACRVIATLRRLGLRSVAIYTDPDAHARHVREADTAVHLGSLVAPGEPRSAGNYLDIAAVVRAAQATGADAVHPGYGFLSEKQQFADALANAGIAFIGPPASAIATMGDKITARAAVTERGVPVVPGLSRPGLTDDDLIAAAPEIGFPVLIKPSAGGGGKGMHRVEHPDALPDALARARREASAAFGDDALFLEHFVDTPRHIEVQVLADSHGHVIHLGERECSLQRRHQKVIEEAPSALLDAATRERIGQAACDAARSVGYTGAGTVEFIVSAHRPDEFFFMEMNTRLQVEHPVTEMVTGIDLVEQQIRVARGEVLAIAQEDVTLVGHAIEARVYAEDPANGFLPTGGEIVSLAEPDTAAGQGVRVDSAMLPGLVVGSDYDPMLAKVIAHGGDRAEAIERLDHALSETRVLGVVTNIDFCRFVLARPEVREARLDTELLDRLAAGYAAPEPVPEALALVGLARVGNRRADDVWDSQVGFRLGAHAPVVSRLSAGTHRREVSAEVHGADERWITADVTITTTPDPDEGTPAADETAADENTAQPWTARVEYVAQHATTSGRTARLIVDGISQQWSLAEIGDQWWASGPAGTWIVELTRTVLDADAGQTAGTIVSPMPGTVVAVSAATGDEVGAGTAIVVVEAMKMEHTLTAPIDGTATVSVAVGDKVSAGQQLAHIDSPAPTPDAA
>NC_016906.1|WP_085950243.1|1379859_1381401_+|methylcrotonoyl-CoA-carboxylase
MANVAALRQALATAARGGGERARERHVSRGKLLPRDRVDGLLDVGSPFLEVAPLAADAMYEGKVPSAGVVAGVGRIAGRECMIIANDATVSGGTYYPMTVKKHLRAQEIAAANCLPCIYLVDSGGAMLLQQDEVFPDREHFGRIFFNQATMSAAGIPQISAVLGSSTAGGAYVPAMSDETVIVRNQGTIFLAGPPLVKAATGEDVSAEDLGGGAMHSSVSGVTDHLVDNDEQALAKVREIVATLGPRDPAQWELTAARSSTRPQTDIYDVVPTDPRTPYDVRSVIEILVDAGEFTEFKANYGTTLVTAFAHLHGHPVGIIANNGVLFSESALKGAHFIELCDQRRIPLIFLQNITGFMVGRAYEEGGIAKNGAKMVNAVACARVPKLTVMIGGSFGAGNYSMCGRAYSPRFLWSWPNARISVMGGPQAADTLATVRRNQIERSGGEWSTDEEETFKQPIREQFEQQSDAYYSTARLWDDGIIDPADTRTVLGLALEACRYAPLTEPRYGVFRM
>NC_016906.1|WP_014359142.1|1376040_1379577_-|indolepyruvate-ferredoxin-oxidoreductase-family-protein
MTLAPHAPATSGLEDRYVRESGTVFLGGIAALVRMVRDRALVDRRMNQRTASFISGYEGSPLAGYDLELAKRRALLEPLDIVHRPGLNEELAATSVMGSQVAAQVTGLAPDNAGKPRSGVVGYWYGKAPGLDRASDALRHANIIGTHPDGGAVALVGDDPGAKSSTVPCASEMALADLYIPILYPADSQDILDLGVHAAHLSRVSGLWTSLKISAHVADGASTVQLDPTRITPEYGGLGRSPHVPSGRLLGANLMELEQNQLTIRMPRAHEYARLNGLNRITVRSSDDRIGIVAAGKTYLDVREALHLMGLTEADLNRLGIRILKLGMVYPLEQEILRRFITDTASGRLDEVIVVEEKRDFIETMMRDILFRDPIAPHIVGKVNEDGSTLFSRFGELDVDAVTRGLAMRLARHHHVDAAIDWLDRSSRRRTRIELPLAVRTPYFCSGCPHNSSTHVAENTLVGAGIGCHAMVLLMDPHQVGDVAGVTQMGGEGAQWLGMAPFVEADHFVQNIGDGTFTHSGSLAIRAAVAAGANITYKLLYNGTVAMTGGQDPVGGFSLTEITNLLLAEGVGRIVITSDDPSRTKANALPSGVSVRDRSELADVQRELAAVEGVTVLIHDQACAAEKRRKRKRGTLDTPTTRVMINERICEGCGDCGEKSNCLSVHPVPTEFGRKTRIDQSSCNLDYSCLKGDCPSFVTVTPGTTDRTQNATAAELAADSLPRPTVTRALTGPGTDVATLRITGIGGTGVVTISQILATAATLDGHAARTVDMTGLAQKGGAVVSDVKISNRPIELAAKVASGTCDLYLACDSLVAADAVNLKVTAPDRTTAVVSTTRIPTGSMVVDTSVGFPSDAQIHDVIDSRVARAVYLDPGALSTELFGHEQYANMLAVGAAYQAGALPISAESVERAISLNGVAVAANTQAFRRGRQVVADPDAVRTEIARLHPVVTAPEPSAWAQAQVAALGSIDDELAHTIALRVDDLVGYADERYAREYLDAVARVHRSSAGDELTDAVARNLYKLMAYKDEYEVARLTADPTFAAQVTDQYGADAKVAVRLHPPTLRAMGMKEKMSLGAWAKPGLGTLAKMKRLRGTRLDPFGYNEIRRTERALIGEYRSLVDSIVAAWESGSVTPQQYSSIVELAALPDMVRGYEGIKMANVARYRETVAEMRSTLGL
>NC_016906.1|WP_014359140.1|1374420_1374876_+|VOC-family-protein
MITSVAIHSIFVLDHQEALDFYVGALGFEVSSDVDMGFMRWLTIAPPAQPDREILLTVPGPPATTPQAAEAIRDLLTQGALGTAAILGTDDCRATYADLVAKGVEFTQEPQEQPYGIDCALRDPFGNHIRITQHTDERPVDDRDIKRWSAS
>NC_016906.1|WP_020172141.1|1373965_1374424_+|helix-turn-helix-transcriptional-regulator
MNRSVMSAREDENRRLLRARDAIDRHHARRLDVDELARIAVMSSAHFSRRFSALFGETPHRYLQQRGIERACAALRSGRTVTDTAFAVGYDSVGTFSRTFTAIVGCTPTAYRRAAAPIPVPGCVVRDWTRPATGLRSFGEALTGVEPVASSS
>NC_016906.1|WP_014359150.1|1390420_1391665_+|hypothetical-protein
MSYQPGSGYGQQPESGQTQGQQGAGYSQPGQASSPQGHPQQPTYGQGYGQTTGQQGYGQQGYGQQGYGQQGYGQQSGYGQQGYGSGYGQQDYGQQGYGQQDYGQQGYGQQGYGQAYGQPAAPKQPFAGVPPIVAPVLAATIGVLAVVLLFCGFAAGYTIQGNVVNDTQKLFASDLSAAYVLVVATGFLAFTGLIKSYRVAPLVAAGATAGVLLTIIMYSGADLDESSNYSLGHGAGAIILLVLSILIFLIAIGWLLLDLGVVKTAAAPETGTAAQATDPAAASAQATTAYGYGAATPGVTSQAQGTASQPGATAVIPGATQATTAYPTAGTASSGAPATTAQPSGAQPSGAQPTAAPSYDPSSYAGYGQGAHAAPSAGAAPGATAAIPQAGSEAVSGSESTSIFQKPEPPQANS
>NC_016906.1|WP_014359151.1|1391819_1393487_+|hypothetical-protein
MPTLRTVASADNLATRLRDARQARRAHHDRPERGPRELILIAFAVPVVSILVTLVIVFAVLMMAGSGLSGIGTAVATCWLAINQVPLSIAGVSIGILPMLPTLLVAGGTAAVVASSCRSRHTLSEYVAVGASAVAGALLMTAIALAVVMDGSSVLPIQSPNALEAFGLTLVVQGLAATAGVVLGRSELITSRLSAADRRGIRYGFVAVLALFAAGGLLILLRLILRFDALRDLVSGGYDFDGYLGLTLLSVLYLPNLIIGAAAVLVGSEAHVGAASVDLFAARGGSVPVLPALAVLPDHTVWWAVWGLLVPLVIAGVVAWRCRTSDPLRYARSIGMAAAVAATTMVVFGWLAGGTLGEIGAAGITLVTAGVYTLGWIGLSGLVIGLVLNFLPALRSRTSAAAGRDAGDGDWLDAVDADDDATDEYTDEYLADEYSADGELAGGEFDDGYEDVDDGYAADGEYAGADLAEGEYSGPDVEDGDLDGADPDDAADTDPADNDPADNDPADNDPADNGGDVDATPTARPHRTRAARIDPDDLDDPWTYDDADTVTRTKR
>NC_016906.1|WP_014359152.1|1393584_1394220_+|phosphoribosylglycinamide-formyltransferase
MTGALPDTPTADRVAIVVMASGTGSLLEALLSRAAEPDAPFVVAAIAVDRECRAGEIAARAGIPLVMCRMAGYADRGEWDAALTAQVAEFAPEWIVTAGFMKILGPQFLRRFGGRIVNSHPALLPAFPGAHGVADALDYGVKITGTTVHLVDEGVDTGPVLAQVPVVVEDGDTAESLHARIKSVERVLLADVVTDLVTRGVVIDGRKAHIP
>NC_016906.1|WP_014359153.1|1394216_1395821_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MNAPSTDASRRPIRRALVSVYDKSGLADLATALHGAGVEIVSTGSTAKTIAAQGVPVIEVSEVTGFPECLDGRVKTLHPKVHAGILADTRKPSHVDQLTELGVAAFDLVVVNLYPFTDTVASGAGPDECIEQIDIGGPSMVRGAAKNHPSVAVVVDPYDYDAVRAAVTDGGFSLRQRQELAAKAFRHTADYDVAVASWMSSVVAPPASTAQGEHEPTGTGFPEWAGATWARSAVLRYGENPHQAAALYLSTADHEGLASAEQLHGKEMSYNNYTDSDAAWRSAHDFDAPAVAIIKHANPCGIAVGADIGEAHRKAHACDPVSAYGGVIAANREITVEMAEQVAEIFTEVLIAPGFADGALSVLQRKKNIRILRAVPPKRGGIEMRPISGGLLMQDRDVLDAAGDNPAGWTLAAGAPADEDTLRDLEFAWRACRSVKSNAILLAKDGASVGVGMGQVNRVDSAHLAVTRAGERAAGSAAASDAFFPFPDGLQVLIAGGVSAVVQPGGSIRDNEVIEAANEAGITLYLTGARHFAH
>NC_016906.1|WP_014359154.1|1395953_1396700_+|sulfite-exporter-TauE/SafE-family-protein
MSILDYLLLVVAGFGAGLIGYVTGLASVVSYPALLAVGLPPIAANVTNTVALVSVGIGSLGQSGRILLDGDRRRLVGGGVAALIGGSIGAVVLLLAPADSFKVTVPYLVAIASIALLLQPRLRDLASHHVDRPWIWYVGLAVVSIYGGYFGAGAGIMLLALALIFTSESLWRATLLKSLFLGIANLVAALLFAVSGPVHWTAALAMAIGCLAGGWCGPPTVKRLPAAPLRIAVGIAGLGLAVWLGVDG
>NC_016906.1|WP_014359155.1|1396745_1399475_-|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit
MEIPDLSDRTRRDCDVLVIGGGTAGTMAALTAAEHGASVLLLDKAHVRHSGALAMGMDGVNNAVIPGKATPEDYVAEITRANDGIVNQKTVYQTATRGFAMIGRLERYGVKFEKDQYGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRKREMRERITIENRLMPVRVLTDGGRAVGAAALHTRTGEFVEIAAKTVILATGPCGRLGLPASGYLYGTYENPTNAGDGYSMAYHAGAELSGIECFQINPLIKDYNGPACAYVANPFGGYQVNAAGERFVDSDYWSGEMMAEVSNEIESARGPIYLKVSHLPEETLGALESILHTTERPTRGTFHRNRGRDYRTHDIEMHISEIGLCSGHSASGVWVDENGRTTVDGLYAAGDLACVPHNYMIGAFVYGELTGTHAAETARELPMPADLPSDQLAAAHELIYRPLRNPDGPPQPQVEYKLRRFVNDYVAPPKTSNKLAIAIETFERMRADIEQMGARTPHELMRCAEVTFIRDCAEFAARSSLTRTESRWGLYHQRADLPDRRDDTWGYHLNLRKSADGTMEFVGRPVEPYLVGVEGLDHIPPTDRSVIAIEEPPIVSGPGYRGVESPVRPPVSQPPAAASPRIVELLALSPAHAADLDTFLDDDDATVRRTAISVLGETTPEAFDTALVAALADGSTDVRAAAAHGLRELVEILEPTPQLLGALREHVGSTDPVVRSTVVDLLRALRSGDRDLFTRALSDADHRVRIEAIGALVSLDAAAPIAELVVDDNREVRIAVAEGLTTIGVGGSGAIRILARDRDPLVRAAALAALAHLGDAEIDGPPLVAALRDSAWQVRVGAARGLAAARAESTVGALSGALDDVHHDVRRAAALTLSLWADDPDVQTILGRAAEDSDADVRAAVRRSTVRAGMVRAGTAGV
>NC_016906.1|WP_014359156.1|1399530_1399758_-|ferredoxin-family-protein
MSQVTFRADVPVTIDESLCIEGCTLCVEVCPLDSLAINPDSGKAYMHVDECWYCGPCAVRCPTGAVTVNMPYLLR
>NC_016906.1|WP_014359157.1|1399769_1400531_-|GntR-family-transcriptional-regulator
MQSEPPFPGRPAPPGRVRADNARVVADVLRRAIHDGAIDEALDERALIDEFNVSRNTIREALAALTDEGLIRRSPRVGTHVVARKLDHGLDALQGLQETFRRHGAVRNVVKIATLVDPPRLVARRLRLDDAQAVYIERLRYLDDEPISLDITYLVPDLGIAVLDHDLESQDVFTVLEEVAGGRLGRADMTVEAVDADPHSAAHLEIASGSSLLLLERLTHLAADDRPVDLEYIRMRSDRIFLRSTAYRNEQLP
>NC_016906.1|WP_014359158.1|1400888_1401755_+|ABC-transporter-permease-subunit
MTLFVDITPQEQGGEPEIGRRAGRSRWKAVGLHVGLPLLSLVLFLVLWQVVAVSGVWSEVFVPRLGTVWHAFVEMSTTHDGAIGYAGYYWWEHLYMTLRRVVVGVIIGVGVGVVLGLVMGSVPVIRRVLEPWLTFLRALPPLAYFFLLVIWLGIDEAPKITLLALAALPPAAVATTAAVGAAPVALVEAARALGASRREVLRDVIIPAALPETFTGIRLSVGIAYSSVVAAELFNGIPGIGGVVKDASNYNNTPVVLVGIALIGFSGLVIDGVLRVIEHRAVPWRGKA
>NC_016906.1|WP_014359159.1|1401761_1402820_+|ABC-transporter-substrate-binding-protein
MTSDRRRPLRAASVLLATFVAALLAVAGCSVDRSGQDSDKPTIRIAYQSFPSGDLIVKNNHWLEDALPNYNIKWTKFDSGADINTAFIAKQIDFGAIGSSPVARGLSGPLNIPYQVAFVLDVAGDNEALVARNGIGINTVADLRGKRVATAFASTAHYSLLAALAQAGVNPADVDIIDLQPQASLAAWQRGDVDAVYTWLPTLDELRKTGKTLIASRQLATAGKPTLDLGVVATQFAKDNPSVVDTWRKVQARALALIHDDPQAAAKAVAAQLGTTPTDAANQLKQGTFLTAAELTSPTWLGVDGQPGNLAENLHSAAEFLAAQQQIPSAPPLSTFQQAIYTKGLPGVLSAQ

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Crispr_ID: NC_016906_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016906_2

3058967-3059060

Orphan

Consensus_repeat	Method
CCGCTCACCGGGCGCGCCACGCCTGCACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016906_2

>merge|NC_016906|2|3058967-3059060|CRISPRCasFinder
CCGCTCACCGGGCGCGCCACGCCTGCACGAACGAGTGGGTGGGCCCGCGTCAGCGGCTCACCCCCCGCTCACCGGGCGCGCCACGCCTGCACGA

>NC_016906|2|1|3058967-3059060|CRISPRCasFinder
CCGCTCACCGGGCGCGCCACGCCTGCACGA	ACGAGTGGGTGGGCCCGCGTCAGCGGCTCACCCC
CCGCTCACCGGGCGCGCCACGCCTGCACGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016906.1\|WP_014360286.1\|3049108_3049927_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180766
NC_016906.1\|WP_014360289.1\|3052766_3053099_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180818
NC_016906.1\|WP_014360300.1\|3072144_3072900_-\|TIGR02234-family-membrane-protein	unknown	unknown	gnl\|CDD\|378200
NC_016906.1\|WP_014360297.1\|3067042_3068887_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|237284
NC_016906.1\|WP_006369671.1\|3058025_3058904_-\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|224857
NC_016906.1\|WP_043456523.1\|3062286_3066858_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NC_016906.1\|WP_014360295.1\|3060788_3062294_-\|glutamate-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|237213
NC_016906.1\|WP_014360298.1\|3068961_3069783_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NC_016906.1\|WP_014360291.1\|3054024_3055221_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NC_016906.1\|WP_014360299.1\|3069779_3071156_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NC_016906.1\|WP_014360290.1\|3053122_3054028_-\|RNA-polymerase-sigma-factor-SigJ	unknown	unknown	gnl\|CDD\|132002
NC_016906.1\|WP_006371430.1\|3071215_3072034_-\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NC_016906.1\|WP_081484751.1\|3052039_3052672_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_016906.1\|WP_043457157.1\|3059154_3060588_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|180487
NC_016906.1\|WP_043456521.1\|3050820_3051996_-\|DUF2236-domain-containing-protein	unknown	unknown	gnl\|CDD\|378343
NC_016906.1\|WP_043456520.1\|3049930_3050875_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|214854
NC_016906.1\|WP_014360292.1\|3055381_3056086_+\|DUF998-domain-containing-protein	unknown	unknown	gnl\|CDD\|377627
NC_016906.1\|WP_014360293.1\|3056043_3057876_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|223953
NC_016906.1\|WP_014360301.1\|3072892_3074479_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|184152
NC_016906.1\|WP_006371433.1\|3074475_3074655_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|224853

Protein	Function_ID	Function_description	E-value
NC_016906.1\|WP_014360286.1\|3049108_3049927_+\|SDR-family-oxidoreductase	gnl\|CDD\|180766	PRK06940, PRK06940, short chain dehydrogenase; Provisional.	1.06858e-112
NC_016906.1\|WP_014360289.1\|3052766_3053099_+\|hypothetical-protein	gnl\|CDD\|180818	PRK07062, PRK07062, SDR family oxidoreductase.	9.0027e-05
NC_016906.1\|WP_014360300.1\|3072144_3072900_-\|TIGR02234-family-membrane-protein	gnl\|CDD\|378200	pfam09534, Trp_oprn_chp, Tryptophan-associated transmembrane protein (Trp_oprn_chp). Members of this family are predicted transmembrane proteins with four membrane-spanning helices. Members are found in the Actinobacteria (Mycobacterium, Corynebacterium, Streptomyces), always associated with genes for tryptophan biosynthesis.	3.27493e-35
NC_016906.1\|WP_014360297.1\|3067042_3068887_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|237284	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed.	3.28497e-149
NC_016906.1\|WP_006369671.1\|3058025_3058904_-\|acyl-CoA-thioesterase-II	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	1.02937e-104
NC_016906.1\|WP_043456523.1\|3062286_3066858_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NC_016906.1\|WP_014360295.1\|3060788_3062294_-\|glutamate-synthase-subunit-beta	gnl\|CDD\|237213	PRK12810, gltD, glutamate synthase subunit beta; Reviewed.	0
NC_016906.1\|WP_014360298.1\|3068961_3069783_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	2.64966e-117
NC_016906.1\|WP_014360291.1\|3054024_3055221_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	3.25237e-51
NC_016906.1\|WP_014360299.1\|3069779_3071156_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NC_016906.1\|WP_014360290.1\|3053122_3054028_-\|RNA-polymerase-sigma-factor-SigJ	gnl\|CDD\|132002	TIGR02957, putative_sigma_factor, RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.	8.22495e-101
NC_016906.1\|WP_006371430.1\|3071215_3072034_-\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	9.8703e-132
NC_016906.1\|WP_081484751.1\|3052039_3052672_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.0162e-07
NC_016906.1\|WP_043457157.1\|3059154_3060588_-\|pyruvate-kinase	gnl\|CDD\|180487	PRK06247, PRK06247, pyruvate kinase; Provisional.	0
NC_016906.1\|WP_043456521.1\|3050820_3051996_-\|DUF2236-domain-containing-protein	gnl\|CDD\|378343	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236). This domain, found in various hypothetical bacterial proteins, has no known function. This family contains a highly conserved arginine and histidine that may be active site residues for an as yet unknown catalytic activity.	9.90773e-18
NC_016906.1\|WP_043456520.1\|3049930_3050875_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|214854	smart00849, Lactamase_B, Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.	4.60214e-16
NC_016906.1\|WP_014360292.1\|3055381_3056086_+\|DUF998-domain-containing-protein	gnl\|CDD\|377627	pfam06197, DUF998, Protein of unknown function (DUF998). Family of conserved archaeal proteins.	2.11716e-18
NC_016906.1\|WP_014360293.1\|3056043_3057876_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	0
NC_016906.1\|WP_014360301.1\|3072892_3074479_-\|anthranilate-synthase-component-I	gnl\|CDD\|184152	PRK13571, PRK13571, anthranilate synthase component I; Provisional.	0
NC_016906.1\|WP_006371433.1\|3074475_3074655_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|224853	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only].	3.45858e-13

>NC_016906.1|WP_006369671.1|3058025_3058904_-|acyl-CoA-thioesterase-II
MTADPTSDLGKLLELLDVEQRDADLFIGQHPEQKTARTFGGQMLGQGVVAAARTLTRGTPPVHALHAHFIRGGDVNEPLEYHVDRFRDGKSFANRQVTAKQKGEEIFTMLVAFQDNSAGLEHAVEIPQVPYPEELPPLGEHFKGFEDRIATFVDALHPIDIRFANDPSWKMREAGEKLRDNRVWMKTDGQMPDDPIMHVAAMCYASDTTVLDSIITTHGLSWGIDRLFAATVNHSMWFHRDFRFDEWMLYATRSPVATGSRGMGSGRFWMRDGTLATSVVQEALIKYFPPKK
>NC_016906.1|WP_014360293.1|3056043_3057876_-|long-chain-fatty-acid--CoA-ligase
MSESEPILFPHESGRSVATLPEAFQATVGMRPTAIALRTVGGIREITWAEYGRRVEAIARGLAALGVGPGDTVGIMLTNRPEFHLVDTAALHLGAVPFSIYNTSSPQQIEYLFGNAGNAVVVTEQIFVPAVRAASTAVTTTIVVDGPAADAITLDDVEHSGATDFDFAAAWQAVRPEDLATIIYTSGTTGPPKGVEITHRNIISELTSLAEVVDVGFDDRVISYLPAAHIADRVSSHAANMVRGIQVTTVPDPREIAAALPEVRPTFFFGVPRVWQKIRAGIEAKLAEETSPVKKTLGAWAMKTGAAAAQAQLDGRAPNAFAAARHTLADKLALQKVRSAIGMDQLTFAGSGAAAIPPEVLQFFLGLGIPVLEVWGMSETTGVSTMTTPENMRIGTVGKPVSGVEVTLADDGELLIRGPVVMRGYRKQPDKTAETIDSDGWLATGDIAEIDADGNVRIVDRKKELIINESGKNMSPTNIENALKAASSLIGQVVAIGDAKPFVSALLVLDPDAAAARAKALNMPDADVAALTGHPGVIEEVIGAVRLGNGRLSRVEQVKRFTIVPEAWEPGGTELTPTMKLRRKPIADKYAEHIELLYASDAGDGVIDLR
>NC_016906.1|WP_014360292.1|3055381_3056086_+|DUF998-domain-containing-protein
MLSVRELSPRLIVVGILIAAAGVCYSSWVLEFFWASPLDPLRSFMSELDAEHRPHRLVYVYGDVITAVCAMLAGVLAFVPRPAVAGGFARGAFVSLVVFGVSTITDALSPIECIPHVDPNCPSEPSGLLPQLHHIHAFTSSVAVFAIFIAMILGVVAAWRTPIWPVLRLLGLTILVVTFFATVWMLAADNLSGDWLLGLAQRIQIGGMTLYLVVWGAAVAVQRRSITPSPASEA
>NC_016906.1|WP_014360291.1|3054024_3055221_-|FAD-dependent-oxidoreductase
MRTMSEQRSTVVVVGGGYAGTMAANRLAAESSFDVVMVNARDHFVERIRLHQWAAGTATPTRDFQTLLSARVRRIVATAEHIDAPGRLVGLDSGDRLDYDWLIYAVGSSGRAAIEGAADHAQQVTNWESATRLRNRLAELRGAGRVTVVGGGLTGIETAAELAEAGHRVTLVTADEIASSLSVRGRERTRRALKHLGVVCHEHTRVERIGATTVTLVHATGEWVEAATDITVVTTGFAVPDLARRSGLTCDHLGRLCTDAALVSVDDERILGAGDAVAPAGNVPRMSCQAAMPLGLAAAQSVRALAKGEHPVAAYPGFVAQCVSLGRHAATLQLTHKDDSPTRGVVTGRGAALMKELICRGTIWGLQLEARHPGIYPAARSTASVDHRDPTPNGQVVP
>NC_016906.1|WP_014360290.1|3053122_3054028_-|RNA-polymerase-sigma-factor-SigJ
MSTGGTRDEHLRIFVDHRPLLFTIAYEILGSATESDDALQESYLRWSEVDLDAVDDPRAYLAKVVTRQALNAARAGQRRREDYVGPWLPEPIVIDVRDPADDVVLAEAVSTAMMVVLHSLGPDERAVFLLREVFGFAHAEIADMTQKSVAAVRQIAHRAREHVQARRPRFGADADTGTQVAHAFLAAAATGDVQALLEVLAPDTVYLADSDGKAPAARRPIHGADQVARIMANLMRLAEKRQMQVGEMEVNGMPGFTVAVSDDPGAILWLDVVDGLIRHVFVMRNPAKMAAVRTVREISRH
>NC_016906.1|WP_014360289.1|3052766_3053099_+|hypothetical-protein
MMIGMHTTKHSFTDTVLVVTDGSLRSRTVIDQVLRSGRNAVVAGRHTRDLVSYVDAAVHDRVWAVVCDPADPTQIEALIERATDTMGPVIMVVDPAGQLHDVHSADRQVA
>NC_016906.1|WP_081484751.1|3052039_3052672_+|TetR/AcrR-family-transcriptional-regulator
MARTPARSSAGARTRVAPRQPRAVAMRRRLLDATTTLLAERPDSVPTTQDIADHCDVSIGTVYRYFADVGDILFDLRQEAIQQISSDLAVGIGQAIDVEPLAAITTVVDALTSSFERHAPVIAASLAGDSAEFGSAWAQIEAPLVPLGRILPTRFRPDLSPAELDDLVFLTMGATASLCLRVALARPATADRRRLVDTCARMLLAAFAIP
>NC_016906.1|WP_043456521.1|3050820_3051996_-|DUF2236-domain-containing-protein
MTLVPPTGLVNTDRARTLYGHAGDTWIAAMWRADDLADAVVAERGSAALIRPALADGIGALTGASPALVALFDSIEREPDWLDHDRCDRAADALVRHFPAMAIVLAAASLLRGAGNSIAGKPLALTGRYSTMPGVRSVEVGEWLRRVLTPGGMRRDGAGFAYTVRVRMIHAHVRAHLLRSGTWEHDAWGVPIPQPYMAFTLAEFGHIAIEAMGTLGVRFTADELEDIYHLWRYVGHVIGMDDDLNPRNEADHRRIEELYRLTSPGPDAYDREFVTALNADYLIPEFANTMSLPQRWRVPVATAVMEGYERVFLGDADADALGIRRRRIARLLPRLSGVMHLISRGQIRRAGGLDEFTRRAYADRDTEMARMRAAYAMTHDMVDTAPDRVSV
>NC_016906.1|WP_043456520.1|3049930_3050875_+|MBL-fold-metallo-hydrolase
MYTVNRFGAVDVLTAGNGGVVPYGNTVVVRGSDAVLVIDPSLALDHDPVGADAVMISHAHEDHIAGLRHFTADTFAHRHDAAAVGSLDTLIAGYGLDPDLRDAMTTVMTDDYHLPAVRDGVVGVTDGHTFDLGDQTATVIHLPGHTAGHCGVLIEPAGFLYVADIDLTSFGPMYGDLGSSLDDFFASIDRVGEIDARWYGTFHHKGVVSGRSEFGNRLATYRHRILEREERLLEFLRQPRTFDEIVAHRLVYRPHVEAPWVRSVERRTAQLHLERLLEAGAVTAIGDEPTGRHTGNAQTDTRSGAVSTMSWVIA
>NC_016906.1|WP_014360286.1|3049108_3049927_+|SDR-family-oxidoreductase
MSRNVLVVVGTGGMGVAIARRQGGGRQVLLADADATALDARVDALDGEGFDVSGHPVDVASADSLRALAEHASGLGAVDQVVHTAGLSPVQASAEAILRVDLLGVALSLDVFGEVIAPGGAGVVIASMAGHMFGPLPADQAAALAATAAQDLLGLGFLQGDVASNPALAYGIAKQANHIRVRAAARTWGARGARINSISPGVIATAMGRQELAGASGETMRSMIEGSGTGRVGTASDIAAAAAFLLGPESSFVTGTDLLVDGGVVASLTAQG
>NC_016906.1|WP_043457157.1|3059154_3060588_-|pyruvate-kinase
MTRRTKIVCTLGPATNSEERLKELVEAGMDVARLNFSHGSHEDHRTVYERVRRAGDAAEKAVGILADLQGPKIRLGKFVDDGALNGQVMWATGEEVRITVDDVVGTHDRVSTTYKQLAEDAEAGDRLLVDDGKVGLKVTAIDGNDVVCVVTEGGPVSNNKGLNLPGVKTSIPALSEKDIADLEFALQLGVDLVALSFVRSPADIELVHEVMDRVGRRVPVIAKLEKPEAVDNLEAIVLAFDGVMVARGDLGVELPLEQVPLVQKKAIQMARENAKPVIVATQMLDSMIENSRPTRAEASDVANAVLDGADAVMLSGETSVGKWPIETVQTMTRICVAVETGSRDVPPLSHVPRTKRGIISYAARDIGERLEVKAMVAFTQSGDTVRRLARLHSRLPLLAFTPTQAVRSQLALSWGTETFIVDHVDTTDHMIDQVDHQLLRIGRLKDGDVVVIVAGAPPGTVGSTNMIHVHRIGEQDH
>NC_016906.1|WP_014360295.1|3060788_3062294_-|glutamate-synthase-subunit-beta
MADPRGFLEVSKKEARYRPVAERIRDWGDVYEHADNPIKVLSEVSDQARRCMDCGIPFCHSGTAGCPLGNLIPEWNDLVRRGRWDAASERLHATNNFPEFTGMVCPAPCEAACVLSISENTTGGSVTIKRIEKTIAHESWAEGIIGPEPPALKTGKSVAVVGSGPGGLAAAQQLTRAGHDVTVYERDDRLGGLLRYGIPEYKLQKSDIDRRIAQMRAEGTEFVTSCNVGTDLSVAELRERHDAVVLAIGAMAARDNPVPGRDLNGVHLAMEHLVPANRECEGDGESPITAKGKHVVIIGGGDTGADCLGTAHRQGAASVVQLDYNPELPSDRDDTRSPWPTWPLVMRTSSAHAEGGERKYQVAVQRFVGDEHGNVTTMVLAEVAVIRESDGRRVITPVSEEFEIPCELALFAIGFEGVERGPLLDGLELAPNGRGALSCGSDWQTDADGVFVCGDAHRGASLVVWAIAEGRSAARSVDEYLMGASDLPSPVRPAALPLSVR
>NC_016906.1|WP_043456523.1|3062286_3066858_-|glutamate-synthase-large-subunit
MLFSALPAKQGLYDPEAEVDSCGVAMVTDIHGRRSHSIVSDGLLALENLEHRGAAGAEANSGDGAGILIQLPDELLRASVDFELPAPTASGVNTYAAGTCFLPRDPDLRSAAIARVTDLAAAEGITILGWRELPVDADGADIGETALDCMPHMAQLFVTVDPGPGVTRIGGIDLDRAIYPFRKQAERVTPEIDAEGTGLYFPSLSSRTIVYKGMLTTMQLPLYYPDLRDERCMSAIAIVHSRFSTNTFPSWPLAHPFRFVAHNGEINTVRGNRNRMRAREALLETDLIPGDLKRAFPICTPEASDSASLDEVLELLHLGGRSVAHAVMLMVPEAWENVPSMDPKRRAFLQFNGSLMEAWDGPACVTFTDGAVVGAVLDRNGLRPGRWWQTRDGRVILASEAGVLDVPVDDVVSKGRLEPGKMFLVDTAAGRIIPDEEVKGDLINAEPYDEWLHAGLLDIATLPPRPVYTPNHDTVVRRQVSFGYTEEDLRVLLTPMAASGYEPLGSMGTDTPVAVLSKRSRLLYDYFVELFAQVTNPPLDAIREEIVTSMARVMGPEQNLLGPTAASCRQILLHWPVIDNHDLAKLVHIDDDGDNPGLSAKVLHGLYEVADGGPGLAAALEDLRLRASQAIAEGHRTLVISDRHTDREHAPIPSLLATSAVHHHLVRTKERTKVALVVESGDAREVHHIALLIGFGAAAVNPYLALESIEDLIAQGELIGVAASKAIRNYVEALGKGVLKVMSKMGISTISSYTASQAFEAVGLSSEVVREYFTRTVSRIEGVGLDELAEEVRMRHHRAFPENPTEQVYRRLEVGGEYQYRREGELHVFTPETIFLLQHATKTGRDDVFQKYSDEVDRLQREGGTLRGLFELDLGARDPIPLEEVEPAEEIMKRFNTGAMSYGSISAEAHETIAIAMNRIGARSNSGEGGEDVDRLYDPERRSAVKQVASGRFGVTSDYLINATDIQIKMAQGAKPGEGGQLPAYKVYPWIAKTRHSTPGVALISPPPHHDIYSIEDLAQLIHDLKNANSQARIHVKLVSAVGVGTVATGVSKAHADVVLISGHDGGTGASPLTSLKHAGTPWEIGLADAQQTLMLNGLRDRITVQCDGALRNGRDVIMAALLGAEEYGFSTAPLIVTGCIMMRVCHLDTCPVGVATQNPQLRARFSGQAEHIVNFFRFIAEDVRKYLAQLGYRTLDEAVGQSQRLHTDAAVAHWKSKGLDLSPIFRRIEDKGPTRRVRGQDHGLDKALDQTLIQLAEGALEDAHPVTLELPVRNVNRTVGTLLGAEVTRRYGAAGLAEDTITVELTGSAGQSLGAFLPPGVTIKLSGDTNDYVGKGLCGGKIVVAPHPDAWFIAEDQVIAGNTILYGATSGQVYLRGRVGERFSVRNSGATAVVEGVGDHACEYMTGGRVVILGPTGRNMAAGMSGGMAFVYDLDPAKVNMAMVELMRPDPDDLRWLHEHITIHTELTGSAIGASMLADWPRRCLAFTKVMPTDYKRVLDAAQMAEAEGRDVDSAIMEAARG
>NC_016906.1|WP_014360297.1|3067042_3068887_-|prolipoprotein-diacylglyceryl-transferase
MTVIAPTTTLLAYIPSPPQGVWHLGPVPLRAYALCIIVGIIVAVWWGDRRWIARGGQPGEVLDIAIWAVPFGLIGGRIYHVLTDWSIYFGGGGKSPIDVFKIWDGGLGIWGAVILGALGAWIGARRHGIRLPAFGDAIAPAILLAQAIGRLGNYFNQELYGRPTTVPWGLEIYERTNGIQSGPNLINGTSTGQVYEIVHPTFLYELVWNVLVVIALVVLDRRFRIGHGRLFALYVAGYCVGRFVVELLRSDTAYTFIAGIRINVFTSALLFVCAAIYFVVATKGRERGLEMYYPDRAEELEALGVVGYVDDRYPDVDDEREPERDEDEPFDSDGEMTDAGDDSTATEVIDKGIAEHDEEAAVDPQLDEDAVAPATPAPSPWTSPDPAADADSAPDTADSAPDTADSAPDTADGAESDADSAPDTAAGASPDADSAEPDADSAQSDADGAQPDADSAPDTADSAQPVADSAPDTAAGAQPAADSAPVDTNSAPDTADSAQPDADSAQPDADSAPDTADSAQPDADSAESDADSAPDSADGAQPDDDSAPDSADSAQPDADSALDTADGAEPDADSVPDIADGASPDIDSAQPDADSAQPDADSAPDSAKDTPHTS
>NC_016906.1|WP_014360298.1|3068961_3069783_-|tryptophan-synthase-subunit-alpha
MTAPTVRHAGASKLSPVFTRCREQGRAALIGYLPVGYPTVAGSVESFTTMVEAGCDIIEVGVPYSDPVMDGPTIQEAADLALTNGVRVRDVFTAVRAITDAGGQAVVMSYWNPILAYGVERFSTDLAEAGGAGLITPNLIPEEGHAWHEASDAHGLDRIYLVAPSSTPERLAYTIDACRGFVYAASTMGVTGARTAVSNAAPELCARIREYSDIPIGVGLGVRSGEQAAEIASYADGVIVGSALVTAAQAGQGQLRDLVRELADGVAHPNPPR
>NC_016906.1|WP_014360299.1|3069779_3071156_-|tryptophan-synthase-subunit-beta
MTTDQSSGTDAAPTVLPTASQGVATRTSLEPDAGGHFGVYGGRHVPEALMAVIDEVTTAYEKMRTDDDYLAELDRLQRDYVGRPSPLYEATRFSDDAGGARVFLKREDLNHTGSHKINNVLGQLLLARRMGKSRIIAETGAGQHGVATATGCALFGMECIVYMGRVDTERQALNVARMRLLGATVIAVETGSATLKDAINEALRDWVTNAHNTYYCFGTAAGPHPFPMLVRDLQRIVGLEARAQILSHAGRLPDAVVACVGGGSNAIGVFHPFIDDADVRLVGYEAAGDGVETGRHAATFTGGTPGAFQGAFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAYLKDIGRAEYRPITDTEAMNALALLSRREGIIPAIESAHAVAGALQLGHELARTSPRGAQAGTQGAPIIVVSLSGRGDKDVDTAAEWFHLFDPPPSESETQSESGAAQSDPGESR
>NC_016906.1|WP_006371430.1|3071215_3072034_-|indole-3-glycerol-phosphate-synthase-TrpC
MSTPNVLDSIIEGVKADVAAREAVVDYAAVKAASVQAPDPKDVMAAFQQPGIGVIAECKRASPSKGELATIADPAELARAYEDGGARIISVLTEERRFRGSLADLDAVRAAVNIPVLRKDFIVGPYQIHEARAHGADMILLIVAALEQNVLASLLDRTESLGMTALVEVHTEEEANRALEAGASVVGVNNRNLKTLEVDRDNFSRIAPGLPTKVIRVAESGVRGTADLLAFAGAGADAVLVGEGLVTSGDPRTAVAELVTAGTHPSCPKPVR
>NC_016906.1|WP_014360300.1|3072144_3072900_-|TIGR02234-family-membrane-protein
MSEQAPDPTTPDAADPARRSRRIKVIAAILMALGALAFWSASRVTWATVYAGDGMSPDRYMQVKGADWSPWLTPLALVLLAAILAAFSLRGWGLRIVAVLVAAGGLLAAFPALSLLTSSSDSLYAARAIDLSDRYIVRLTTTHGWVSVIVFAGTVCCVAAGVLLLRSASGAGMSSKYRTPAARRDELEREIFAEHERRKAAGDAGTDPAGAPIGQQGPDAGGDAARTEPPHVNERMMWDALDTGIDPTEQR
>NC_016906.1|WP_014360301.1|3072892_3074479_-|anthranilate-synthase-component-I
MSTPAMSTSTQDHAAGSATTSLAEFLDLAADHRVVPVTRKVLADSETPLSAYRKLAGDRAGTFLLESAENGRSWSRWSFIGAGAPSALTVVDGKASWWGAVPSGAPVDGDPLTVLAESLRLLATDPLPDMPPLTGGFVGFMAYDMVRRLERLPETTTDDLHLPDLMMLLATDLAAVDHHEGTITLIANAVNWDDSDERAEQAYADAVARLDRMTQALAAPAPSTVSHFDRPAPDFRVQRSREEYHEIVRDLVGEIEAGEAFQVVPSMRFEMDTAADPLDVYRVLRASNPSPYMYLLRIPGIESDPFTIVGSSPEALVTVQDGWATTHPIAGTRWRGATEEEDQLLGKDLIADEKENAEHLMLVDLGRNDLGRVCRPGTVKVSDYRHIERYSHVMHLVSTVSGELRADKHALDAVTACFPAGTLTGAPKVRAMELIDTHERTRRGLYGGIVGYLDFAGNADTAIAIRTALIKDGTAYVQAGGGVVADSDPDYEYNEARNKATAVLNAVAAASTMRRVSGGAAEGGPTSE
>NC_016906.1|WP_006371433.1|3074475_3074655_-|4-oxalocrotonate-tautomerase-family-protein
MPLIQISQTPGLSDRVKRETIAAVTEAYARATGKSPDSVWVTINEIPRTQWGVGGEPLG

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Crispr_ID: NC_016906_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016906_3

3982226-3983952

Unclear

Consensus_repeat	Method
GCTGCAATGGNAACCCGGCCGTGAAGACCGGGAGCACN	CRT
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CRISPRCasFinder
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	PILER-CR

23 spacers

cas2,cas1,csb2gr5,cas7,cas8u1,cas3

The CRISPR arrays of NC_016906_3

>merge|NC_016906|3|3982226-3983952|CRT,CRISPRCasFinder,PILER-CR
CTCAAATGGAACCCGGGGCCTGAAGACCGGGAGCACGCGGGTGAGCGGTAACGCGTCCACCCAGTTCTTTGGACCTCAATGAAACCTGGCCATGAAGGCCCGGGAGCACCGGCCCATCGACCTGCGCAACATGCGGAACCTGCTCGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACCGGGGTGTCGAGAGCTCCTTGGCCTCGGACGTCAGAACGCTGCAATGGAACCCGGCCATGAAGACCGGGAGCAACCGACCGGCGCCCCGTCCAGCGGTGCCGACGCACCGATCGGCCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACGCATGGTCAGCTCGATGCCGGGCACCGAATCCCTTGCCTCAATGGAACCCGGCCGTGAAGACCGGGAGCACTCGACGTCCGAGAAAGTCGCTCCACGTCGACCGGTCTCGCCTCAATGGAACCCGGCCGTGAAGACCGGGAGCACCGGTGATCGCCAGCCAGTCCGACTTCGACGACCACTCCGGGCCTCAATGGAACCCGGCCGTGAAGACCGGGAGCACGTCGCCAAATGTCGACGTGTGCCAGATGTCCGTGATGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACACGCGCGACTACTCGCTGCACAGGCTGCGATGCATTCGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACCTGGTTCGGCCGCAAGGGCGGCCACGCAAAAGACTCGGTGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACTCGGCCGGTCACGCTGGCCGGTTACCGGCAGGCACTGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACGCGATGAAGCGGTGCAAGCACCCCCGGACACGGATCGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACTTCACACCCTCGGCGTGCGCCTTCGCCTTCAGGTCGGCGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACGTCGTACGTTCCGCTGCTCGTGGAAGGTCACACCCTTGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACTCACCGCGAATGTCACCGGCACCAGTTCCCGGACCACCGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACCCGCGAACGGCCCCCTGCGGGTCAAGGTGGACCGACAGGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACCCGCATTGCAATCGTTGATCAGACCATGCCGCCACGTGAGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACGATCACTCGCCGTCGACTGTGATCTCTTCGTCTTCCTCGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACCCCGACGCCGCGTGACGCGGACACGAAACACCAACCCGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACCTGGAGGGCGGGCGGCTGCGTCCGGTTGCGCAGTTCGTAGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACTCTGTGCTGCCTCGTCAGCCGACAATCCGGTGTTGCGGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACCATTTGATGCGCGCCGTGGCTTGCAGGATGTCCCCGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCACTTCGTCAATCTCTCCCATAATGGCCGCCAAAACCACCGGCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC

>NC_016906|3|2|3982226-3983952|CRT
CTCAAATGGAACCCGGGGCCTGAAGACCGGGAGCAC	GCGGGTGAGCGGTAACGCGTCCACCCAGTTCTTTGGA
CCTCAATGAAACCTGGCCATGAAGGCCCGGGAGCAC	CGGCCCATCGACCTGCGCAACATGCGGAACCTGCTC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CGGGGTGTCGAGAGCTCCTTGGCCTCGGACGTCAGAAC
GCTGCAATGGAACCCGGCCATGAAGACCGGGAGCAA	CCGACCGGCGCCCCGTCCAGCGGTGCCGACGCACCGATCGG
CCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GCATGGTCAGCTCGATGCCGGGCACCGAATCCCTT
GCCTCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCGACGTCCGAGAAAGTCGCTCCACGTCGACCGGTCTC
GCCTCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CGGTGATCGCCAGCCAGTCCGACTTCGACGACCACTCCGG
GCCTCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GTCGCCAAATGTCGACGTGTGCCAGATGTCCGTGAT
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	ACGCGCGACTACTCGCTGCACAGGCTGCGATGCATTC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CTGGTTCGGCCGCAAGGGCGGCCACGCAAAAGACTCGGT
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCGGCCGGTCACGCTGGCCGGTTACCGGCAGGCACT
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GCGATGAAGCGGTGCAAGCACCCCCGGACACGGATC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TTCACACCCTCGGCGTGCGCCTTCGCCTTCAGGTCGGC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GTCGTACGTTCCGCTGCTCGTGGAAGGTCACACCCTT
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCACCGCGAATGTCACCGGCACCAGTTCCCGGACCACC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CCGCGAACGGCCCCCTGCGGGTCAAGGTGGACCGACAG
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CCGCATTGCAATCGTTGATCAGACCATGCCGCCACGTGA
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GATCACTCGCCGTCGACTGTGATCTCTTCGTCTTCCTC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CCCGACGCCGCGTGACGCGGACACGAAACACCAACCC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CTGGAGGGCGGGCGGCTGCGTCCGGTTGCGCAGTTCGTA
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCTGTGCTGCCTCGTCAGCCGACAATCCGGTGTTGCG
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CATTTGATGCGCGCCGTGGCTTGCAGGATGTCCCC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TTCGTCAATCTCTCCCATAATGGCCGCCAAAACCACCG
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC

>NC_016906|3|2|3982371-3983952|CRISPRCasFinder
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CGGGGTGTCGAGAGCTCCTTGGCCTCGGACGTCAGAAC
GCTGCAATGGAACCCGGCCATGAAGACCGGGAGCAA	CCGACCGGCGCCCCGTCCAGCGGTGCCGACGCACCGATCGG
CCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GCATGGTCAGCTCGATGCCGGGCACCGAATCCCTT
GCCTCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCGACGTCCGAGAAAGTCGCTCCACGTCGACCGGTCTC
GCCTCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CGGTGATCGCCAGCCAGTCCGACTTCGACGACCACTCCGG
GCCTCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GTCGCCAAATGTCGACGTGTGCCAGATGTCCGTGAT
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	ACGCGCGACTACTCGCTGCACAGGCTGCGATGCATTC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CTGGTTCGGCCGCAAGGGCGGCCACGCAAAAGACTCGGT
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCGGCCGGTCACGCTGGCCGGTTACCGGCAGGCACT
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GCGATGAAGCGGTGCAAGCACCCCCGGACACGGATC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TTCACACCCTCGGCGTGCGCCTTCGCCTTCAGGTCGGC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GTCGTACGTTCCGCTGCTCGTGGAAGGTCACACCCTT
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCACCGCGAATGTCACCGGCACCAGTTCCCGGACCACC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CCGCGAACGGCCCCCTGCGGGTCAAGGTGGACCGACAG
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CCGCATTGCAATCGTTGATCAGACCATGCCGCCACGTGA
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GATCACTCGCCGTCGACTGTGATCTCTTCGTCTTCCTC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CCCGACGCCGCGTGACGCGGACACGAAACACCAACCC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CTGGAGGGCGGGCGGCTGCGTCCGGTTGCGCAGTTCGTA
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCTGTGCTGCCTCGTCAGCCGACAATCCGGTGTTGCG
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CATTTGATGCGCGCCGTGGCTTGCAGGATGTCCCC
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TTCGTCAATCTCTCCCATAATGGCCGCCAAAACCACCG
GCTGCAATGGAACCCGGCCGTGAAGACCGGGAGCAC

>NC_016906|3|1|3982375-3983952|PILER-CR
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CGGGGTGTCGAGAGCTCCTTGGCCTCGGACGTCAGAACGCTG
CAATGGAACCCGGCCATGAAGACCGGGAGCAA	CCGACCGGCGCCCCGTCCAGCGGTGCCGACGCACCGATCGGCCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GCATGGTCAGCTCGATGCCGGGCACCGAATCCCTTGCCT
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCGACGTCCGAGAAAGTCGCTCCACGTCGACCGGTCTCGCCT
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CGGTGATCGCCAGCCAGTCCGACTTCGACGACCACTCCGGGCCT
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GTCGCCAAATGTCGACGTGTGCCAGATGTCCGTGATGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	ACGCGCGACTACTCGCTGCACAGGCTGCGATGCATTCGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CTGGTTCGGCCGCAAGGGCGGCCACGCAAAAGACTCGGTGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCGGCCGGTCACGCTGGCCGGTTACCGGCAGGCACTGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GCGATGAAGCGGTGCAAGCACCCCCGGACACGGATCGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TTCACACCCTCGGCGTGCGCCTTCGCCTTCAGGTCGGCGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GTCGTACGTTCCGCTGCTCGTGGAAGGTCACACCCTTGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCACCGCGAATGTCACCGGCACCAGTTCCCGGACCACCGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CCGCGAACGGCCCCCTGCGGGTCAAGGTGGACCGACAGGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CCGCATTGCAATCGTTGATCAGACCATGCCGCCACGTGAGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	GATCACTCGCCGTCGACTGTGATCTCTTCGTCTTCCTCGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CCCGACGCCGCGTGACGCGGACACGAAACACCAACCCGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CTGGAGGGCGGGCGGCTGCGTCCGGTTGCGCAGTTCGTAGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TCTGTGCTGCCTCGTCAGCCGACAATCCGGTGTTGCGGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	CATTTGATGCGCGCCGTGGCTTGCAGGATGTCCCCGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC	TTCGTCAATCTCTCCCATAATGGCCGCCAAAACCACCGGCTG
CAATGGAACCCGGCCGTGAAGACCGGGAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016906.1\|WP_014360947.1\|3984421_3986077_-\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_016906.1\|WP_014360951.1\|3990841_3993232_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NC_016906.1\|WP_006370411.1\|3977144_3977585_-\|50S-ribosomal-protein-L15	unknown	unknown	gnl\|CDD\|235523
NC_016906.1\|WP_014360949.1\|3987679_3988609_-\|type-I-U-CRISPR-associated-protein-Cas7	cas7	cd09678_cas7_CAS-I-U	gnl\|CDD\|378223
NC_016906.1\|WP_006370421.1\|3995507_3996365_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_016906.1\|WP_006370412.1\|3977581_3977767_-\|50S-ribosomal-protein-L30	unknown	unknown	gnl\|CDD\|180163
NC_016906.1\|WP_006370416.1\|3979424_3979823_-\|30S-ribosomal-protein-S8	unknown	unknown	gnl\|CDD\|234658
NC_016906.1\|WP_006370415.1\|3978871_3979408_-\|50S-ribosomal-protein-L6	unknown	unknown	gnl\|CDD\|235495
NC_016906.1\|WP_014360944.1\|3980121_3980883_-\|hypothetical-protein	unknown	unknown	unknown
NC_016906.1\|WP_006370413.1\|3977772_3978420_-\|30S-ribosomal-protein-S5	unknown	unknown	gnl\|CDD\|234790
NC_016906.1\|WP_014360945.1\|3980920_3981682_+\|DUF2127-domain-containing-protein	unknown	unknown	gnl\|CDD\|378298
NC_016906.1\|WP_014360954.1\|3996389_3999341_-\|Z1-domain-containing-protein	unknown	unknown	gnl\|CDD\|378453
NC_016906.1\|WP_006370419.1\|3981762_3982092_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380358
NC_016906.1\|WP_006370409.1\|3975487_3976810_-\|preprotein-translocase-subunit-SecY	unknown	unknown	gnl\|CDD\|236412
NC_016906.1\|WP_170320207.1\|3978463_3978820_-\|50S-ribosomal-protein-L18	unknown	unknown	gnl\|CDD\|235524
NC_016906.1\|WP_014360953.1\|3995025_3995511_-\|hypothetical-protein	unknown	unknown	unknown
NC_016906.1\|WP_014360950.1\|3988592_3990845_-\|type-I-U-CRISPR-associated-protein-Csx17	cas8u1	cd09767_cas8u1_CAS-I-U	gnl\|CDD\|274989
NC_016906.1\|WP_014360946.1\|3984127_3984415_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_016906.1\|WP_014360948.1\|3986194_3987673_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NC_016906.1\|WP_014360952.1\|3993609_3994989_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|367293

Protein	Function_ID	Function_description	E-value
NC_016906.1\|WP_014360947.1\|3984421_3986077_-\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.76187e-115
NC_016906.1\|WP_014360951.1\|3990841_3993232_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	2.12656e-68
NC_016906.1\|WP_006370411.1\|3977144_3977585_-\|50S-ribosomal-protein-L15	gnl\|CDD\|235523	PRK05592, rplO, 50S ribosomal protein L15; Reviewed.	3.23208e-67
NC_016906.1\|WP_014360949.1\|3987679_3988609_-\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.4405e-50
NC_016906.1\|WP_006370412.1\|3977581_3977767_-\|50S-ribosomal-protein-L30	gnl\|CDD\|180163	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed.	1.29644e-24
NC_016906.1\|WP_006370416.1\|3979424_3979823_-\|30S-ribosomal-protein-S8	gnl\|CDD\|234658	PRK00136, rpsH, 30S ribosomal protein S8; Validated.	4.30001e-82
NC_016906.1\|WP_006370415.1\|3978871_3979408_-\|50S-ribosomal-protein-L6	gnl\|CDD\|235495	PRK05498, rplF, 50S ribosomal protein L6; Validated.	3.10517e-113
NC_016906.1\|WP_006370421.1\|3995507_3996365_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	7.88353e-42
NC_016906.1\|WP_006370413.1\|3977772_3978420_-\|30S-ribosomal-protein-S5	gnl\|CDD\|234790	PRK00550, rpsE, 30S ribosomal protein S5; Validated.	3.9972e-95
NC_016906.1\|WP_014360945.1\|3980920_3981682_+\|DUF2127-domain-containing-protein	gnl\|CDD\|378298	pfam09900, DUF2127, Predicted membrane protein (DUF2127). This domain, found in various hypothetical prokaryotic and archaeal proteins, has no known function.	1.52405e-43
NC_016906.1\|WP_014360954.1\|3996389_3999341_-\|Z1-domain-containing-protein	gnl\|CDD\|378453	pfam10593, Z1, Z1 domain. This uncharacterized domain was identified by Iyer and colleagues. It is found associated with a helicase domain of superfamily type II.	1.00753e-74
NC_016906.1\|WP_006370419.1\|3981762_3982092_+\|cupin-domain-containing-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	5.09793e-19
NC_016906.1\|WP_006370409.1\|3975487_3976810_-\|preprotein-translocase-subunit-SecY	gnl\|CDD\|236412	PRK09204, secY, preprotein translocase subunit SecY; Reviewed.	0
NC_016906.1\|WP_170320207.1\|3978463_3978820_-\|50S-ribosomal-protein-L18	gnl\|CDD\|235524	PRK05593, rplR, 50S ribosomal protein L18; Reviewed.	3.16987e-56
NC_016906.1\|WP_014360950.1\|3988592_3990845_-\|type-I-U-CRISPR-associated-protein-Csx17	gnl\|CDD\|274989	TIGR04113, hypothetical_protein_AaLAA1DRAFT_1703, CRISPR-associated protein Csx17, subtype Dpsyc. Members of this protein family are found exclusively in CRISPR-associated (cas) type I system gene clusters of the Dpsyc subtype. Markers for that type include a variant form of cas3 (model TIGR02621) and the GSU0054-like protein family (model TIGR02165). This family occurs in less than half of known Dpsyc clusters.	7.39598e-97
NC_016906.1\|WP_014360946.1\|3984127_3984415_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.19983e-16
NC_016906.1\|WP_014360948.1\|3986194_3987673_-\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.59738e-30
NC_016906.1\|WP_014360952.1\|3993609_3994989_+\|ATP-binding-protein	gnl\|CDD\|367293	pfam03008, DUF234, Archaea bacterial proteins of unknown function.	4.05068e-20

>NC_016906.1|WP_006370419.1|3981762_3982092_+|cupin-domain-containing-protein
MDTSHLTSLVDQLIGTAHRSRSGRAAQTLHGDSSHRLRHTVIALVAGRELAEHESPAEGSVQVLHGRVTITAGDDVWKGRRGDLVMLPDARHSLSAQQDSAILLTVITG
>NC_016906.1|WP_014360945.1|3980920_3981682_+|DUF2127-domain-containing-protein
MNWEVLSCGLRGHETYCPDESELADRLHVDSAAGQAWRCLRCGDFAVGEPRRSGPADHAPEVPRGALLRDLIIMRVLAVERLLRGLFLVLAGVFVIELRHSQQTLQEKFDAELPLLRPIADQIGWNIDDSKVVSWIEKATTLSSTTIVLVGCALLAYGASQFVEAFGLWFAKRWGEYFAVIVTSIFIPLEVYELVERVTVFKVLLLAVNVAAVIWLIWSKRLFGVRGGGKAYHAQHSAESLLTVERAAVADGH
>NC_016906.1|WP_014360944.1|3980121_3980883_-|hypothetical-protein
MVIRSVEPISTAGGFGAATLTDMSRRLGDRKVMVAVWGSGQLLTPTFRADCASAGVRRLQINISDDAVQGAMRISTFDPPIDAVISVWAPDAAAALESIDAHVDSFAAWEVQTRAPLDPPPTADGTRVDALANIALLRRPQDLAYDEWLRIWLDEHTQVAIDTQATFGYYQNIVERCLTTDSGDRGDVRVTGIVEELFPMAAISDPHAFYGSDGDDEELQRRLTAMLASVARFGADRELDVVPTSRYDFSLTP
>NC_016906.1|WP_006370416.1|3979424_3979823_-|30S-ribosomal-protein-S8
MTMTDPIADFLTRLRNANSAFHDEVTLPSSKIKVNIAEILKREGYITDYRTEDAEVGKNLVVALKYGPSRERSIAGLRRVSKPGLRVYAKSTNLPKVLGGLGVAIISTSSGLLTDRQAANQGVGGEVLAYVW
>NC_016906.1|WP_006370415.1|3978871_3979408_-|50S-ribosomal-protein-L6
MSRIGKNPIEIPAGVTVSIDGQTITVKGPKGELSHTVTAPITVAQEDATIVVTRPNDERRNRALHGLNRSLVANLVEGVTKGYTNKMEIFGVGYRVQAKGKDLEFALGYSHPVPIEAPEGITFAVESPTKFSVSGIDKQQVGQISANIRRLRRPDPYKGKGIRYEGEQIRRKVGKTGK
>NC_016906.1|WP_170320207.1|3978463_3978820_-|50S-ribosomal-protein-L18
MSTRRRTATNRRHFRLRKKVAGTPVRPRLAVKRSSRHIHVQLIDDLAGHTLAAASTIEADVRAAGGDKSAQARKVGELIAERAKAAGIDAVVFDRGGKDYHGRIAALADAAREGGLQF
>NC_016906.1|WP_006370413.1|3977772_3978420_-|30S-ribosomal-protein-S5
MPGRQRDGGNGPAGNDNNNNASGDRNDRRGGRDRRGGDRGGRDNDRNQLERVVAINRVSKVVKGGRRFSFTALVVVGDGQGMVGVGYGKAKEVPAAIQKGVEEARKNFFRVPLIGGTVTHPVQGEAAAGVVMLRPASPGTGVIAGGAVRAVLECAGVHDVLAKSLGSDNAINVVHATVAALKMLQRPEEVAARRGLPIEDVAPAGMLRARAGQGV
>NC_016906.1|WP_006370412.1|3977581_3977767_-|50S-ribosomal-protein-L30
MAQLKITQVKGTIGTKKNQRDSLRTLGLKGIRKSVTREDTPINRGLINVVSHLVTVEEVKS
>NC_016906.1|WP_006370411.1|3977144_3977585_-|50S-ribosomal-protein-L15
MTIKLHHLRPAPGAKTDKTRVGRGEGSKGKTAGRGTKGTKARKNVPAAFEGGQMPIHMRLPKLKGFTNRNRIEYQVVNVGDIARLFPQGGTIGVDELVAAGAVRKNKLVKVLGDGELGVAVNVTADKFTASAKEKIAAAGGSATEQ
>NC_016906.1|WP_006370409.1|3975487_3976810_-|preprotein-translocase-subunit-SecY
MLSPLIAAFRTPDLRKKILFVIGIIVLYRLGATVPSPGVNYVEVHKCIDTINSGGGNQVYSLINLFSGGALLQLSVFAIGIMPYITASIIVQLLTVVIPRFEQLRKEGQSGQAKMTQYTRYLTVALALLQSTGIVALAVRGNLLPSSCGDNILNDKSILGLTIIVLVMTAGACLVMWFGELITERGIGNGMSLLIFAGIAARIPAEGRTILTSRGGLVFGLVVVAVLIIVAGVVFIEQGQRRIPVQYAKRMVGRKMYGGSSTYLPLKVNQAGVIPVIFASSLLYLPQLIVQLTQSSSEAPSGWQRWVSTYLADPSNYVYIIVYFLMIIFFTYFYVAVTFNPEERADDMKKYGGFIPGIRPGQPTADYLGYVLSRITLPGSIYLGIIAVLPNLFLEIGNSGGVQNLPFGGTAVLIMVGVGLDTMKQVNSQLMQRKYEGFLK
>NC_016906.1|WP_014360946.1|3984127_3984415_-|CRISPR-associated-endonuclease-Cas2
MARRRHLIAYDICEPARLRRVCKVMEAYGTRLQYSVFLCDLSELERTRWRTDIHGVMDYGEDSVVVIDLGAVGSAATVTQLGRPRTLPASGPMVV
>NC_016906.1|WP_014360947.1|3984421_3986077_-|CRISPR-associated-endonuclease-Cas4/Cas1
MTTDLPELLPARMLNEYVYCPRLFYFEWVDQRWVDSHDTEQGHFTHRAVDKRTGSLPEPESGDPAKRVTSLRIESHALGLVAVLDRVEDGGDGTVVPVDTKKGKPAANGLPWSADVVQLYAQAALLRDAGYEVDRGVLYYAEVHKRVVIPIGNTEVAAAVEIADEAREVASRENAPLPLVGSKRCPRCSLLGLCMPDETNALLRRDESPPRRIVPRDPDSRPLYVTTHGAAVGLKGGRIRVVQKGSKPAEILLIDVSQLCVFGNVQVSSQVLAELWARGIPVLWFSYNGWLRGWAQGEMSKYVQLRTAQACLDDATALGISRSIISGKIKNARTLLRRNSRTDAEQSVQALAGMADSATGAASPAELLGIEGAAARVYFENFSGLLRGALDQIASEFDTNGRKRRPAPDPVNALLGYVYSLLVKDLVAVCIGVGLDPYLGVYHRPRYGRPALALDLMEEFRPLLADSAVVGMLNNGEVTSGDFERRSGGCWLTLQGRRKVIRAYERRLDVQVTHPVFKYKVSYRRVLDVQARILAGVILGELPTYTPMVTR
>NC_016906.1|WP_014360948.1|3986194_3987673_-|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MGTTVDISFPLGRYHATPWDAGANSGYVEWPPAPWRVMRASVAVAHARFIDVDETVALLGRLGNPSAFESAPITTGSTRHYMPDIKHRSDDRGGTDLVIDSYVSVQRRSSLPDLRIHWDADLADDDRKLLSELVENLPYLGRSESVCEAVLAEQSAQPDSTWWRIGAVGDRVETVVVLGAEGVPTRAELEATPTSVRTKLRTVYPPGTRLLGYGRNRSEPSSFRRAEVLRSSRTSDKPITTVRFELHGSASVRMRDFLMPTDVAHSAVRKALHALGDDPEVAAVIGKDGKGPRQQGHDHLHIVPLPSEVDGLRFDGSRPISSVVLWTPRGMSREAVARISRLGCLWTPDRITENSFPKQTMLVAGLGDVSDVAPEIVADDAGSTTWVSATPYFPVRHRKRRSVRDWIEVDLNKELGYRAATAGVEVVDVNVDDSRATVSDLVHFRRRRLWEQRDSTRQSFAVTVTLSKPVAGPLLLGQLSHFGAGLFIPARS
>NC_016906.1|WP_014360949.1|3987679_3988609_-|type-I-U-CRISPR-associated-protein-Cas7
MASKRDIRKYLLEPVVGSRFQPTGFPDLGAATYDGPGGDTRLLVESVQSLANHLEGTTWDEAAQQPVSTVEAIPYVRVVDADGGFLTSSRLEAHRLASAYVLDAKDGGVEFRKTLVERFGLVKNKPLDLRKVYSEIYALDPLSLLHGVFFAQGSWPWQPKISRAVSAFIEAEGVNSAVSGGVKKDSVNNNLDKDAGRTSDRGYGMVPHHRTEYTADKITLFVVIDEQQIHSYGLPESATELLLALADWEVATLLDGGLRLRTACDFEVIGVDGAGELPDIEASEKRLTEAITAADLGAVTELVWTGSKG
>NC_016906.1|WP_014360950.1|3988592_3990845_-|type-I-U-CRISPR-associated-protein-Csx17
MTEHRFVAARGRNLQRSLAALGLVRVLAEQRDPDLRSRVDGDDLVIDTTVDDIARWLVDEYRPRPVLSPWNGGSGFGEKDRNQRAILDDLINFSDRDRVSVLRAAVGVVDRLLEHGRAEGWDKRDLIREIGNRCPDEMLPWLRSAVVVLGNDDLAFPPLLGSGGNDGRLEFSSNYHQRLLDVLPTDAKAERSSLGWAQDALAGTSREKLVKASVGQFDPGTAGTPNSSAYGAAPAVVNPWLFVLMVEGATLFEAGPARRISAQSSVDKGAAMTFMTRGSSAGFDSGSDDEDIRGEVWLPWWNHWLRWPAIQRIFVEGRATWRGKTATRSGDMYLAVGTQGVSAVVSEFDRFIIAKRNGLAFSAIRADTVDVTDDQLLRVVALVEDWPQRLGGRTTGLPGTVTEERRRFDSARVDLARKRSRAERLSHLRSLLRSLTRLEVAVGRSRTVKESVWPRATKRGSGQEMLTILRDATLLDTLVETPEFRLALGLASLRLKWSDGRWVGTRDLLLPIMAGGTSRPAWRERSEIAGYGIRPLAAVMTDLLARVAIDAGAIDDVMSAGGDSISGIAMPSSIPVPLAHLHQFAAGGLDDEEVAEWFDALLVFDWSGERIELDSPGLDTVIPEPALGLLGLLRNGIAASASGANGHDKSDEPTKGLTAEVLGALVGGNVDRAVLLARQRIHEAGRVAVSTVPSRSDYQKISTALLPRSPHHAIAPQFTFSPKIIDDESPQSDLADDHQSESEATHGQQA
>NC_016906.1|WP_014360951.1|3990841_3993232_-|CRISPR-associated-helicase/endonuclease-Cas3
MLQFESFDDFFREATGRQPYPYQVRVATDGAKLPDVIDVPPGLGKTAAIVLGWLWRYLNDETGQVSRRLVLALPMRTLTRQSMLVIPQWIHELGLKDAIDVVQLVGGIGANGHGWRRSPGKPQIIVGTVDMIVSRMLMRGYGSSRGVYPIDAGLLWNDTHLVVDETQLAPASTVTARQIAAFQRESAALNVGLTCMSATVDENLLNTVNNPLTPEANVLRLTNEDLTPEVRQRLDAERVVRELSIAQANPKAIAEAVAAHHRRGLTLVIVNTVATAVDVYKRLAGNKPPLGETRVILLHSRFRPVDRDGKLDELQHLDNAVVVSTQVIEAGVDLDARTLITEAAPWPSLIQRSGRCNRAGITDDAELWWFASGKRSPYELEDVEATAGALRELEGQAVTNARLLDLADEVKTSAPAIQVLRRSDFHALFDTSPDLSGNDPDISPFIRDADDPDVQIAWVDFVGTSRPSQDLRLPEHDHRCRARIGDVRDLLSAGKPLWFFDVAQPAWSDARWSELKTSMPIRPGQVFVIDAEKGGYTTGFGLDPKSSAPVPVLADAPADGPQGAEEPGSDGNTSDSGAIGFGDWLELDQHLREAEDQAKSIVNALDLAAELRADIVLAARLHDIGKAHPLWQNALQRTVEVPESGKVWAKSPGRGRLVYADDVKSFRHELASVALLDAEYADLLEPARDRDLVRYLIAAHHGKVRVQVRDDSGDAKRVLGLSPGEVIIPRLLDVETRTATIKLEPFKAVSDTAEVWADMVHRLLGQYGPFRLAYFEALVRIADWNASALHEGQASA
>NC_016906.1|WP_014360952.1|3993609_3994989_+|ATP-binding-protein
MHFVNRTRELAELRRWWASEDRSPGIVWGRRRVGKTVLISEFARDLPGVIYTATGQSERGELITFSREVNRQGLAGIRDLIGRPFADWDDALEHLSTAAADRQILLVLDEFPEILRSTPRLDNLLRAFLERTRNSSRLRVLLCGSAVRAMQELQAERSALFGRFTLRLHVQPFEPWEAAQILSGISAREQALIYGLLGGMPLYLNWWDTSASITDNLRRLVIAPSAPLLTEGELVMATELEAQESPAAVLHAIASGRTRYSEIQDITRFNPTRTLDRLVSLGIVERMVPVTEKESSTRRRIYRIVDNFLAFYLRVVESYKTEIERGLGESILPVLIDTLDDFMGDRWEDMVLRHVRRMAAAGTIGPEIVRVGRWWNRTSSVEIDLVALSGRAETVTLCGKVKWRSDISDPGLLRTLRDKAAALVDDVDSITYLLAARDRISLTDNILAVTADDVFGPQP
>NC_016906.1|WP_014360953.1|3995025_3995511_-|hypothetical-protein
MSSDDARRRTEYSAIGGALAQLDSKNPQAAQLIAGLTRVIIDEAEKSTRFAAALVGVIDSLRDDGATAPVAVPAPRKRAPAKKKVARQPGAFDPFVVYRESGAVGLGERLASLDLEQLRDIIAEQELDTRKETARKRNLEVISAWIVERVEASENKGSVFR
>NC_016906.1|WP_006370421.1|3995507_3996365_-|ParA-family-protein
MAKVIATISLKGGVGKTTVTGGLAEFMSAEFGQRVLLIDLDSQINLTTMMISEARWFELNTNGRTLATLFSDAVNGTEYFRLDEAIERGVSPVKRVTTVDLLASSLDLIEVQEELSALRVQGGVADGGTGFLRQAIAPVIDFYDYVLIDCPPNIGPVTLNGLAAADAYIIPTIPDVLSTYGIPQIQNRVRKFSEEIGRTIVELGVVITKYKANSAVHRSTTKRLRRDPTIQNVLPSYINEANSVAAAAEFAGYGTLKTKYGTQGQFDQFRALTVDVMTEAQGKIE
>NC_016906.1|WP_014360954.1|3996389_3999341_-|Z1-domain-containing-protein
MIDVVIDALVREFTTDLAPTRFLGAVAGRVMDAGHDPSAVTMDLVVDVMVSDEAASVQSAVRSALIRWDAEEAAAWTGGTEAQTPERRTLIYTLLGIPPAAFEPLTEAFPIAGGPTVIVAPQPWEPWYVPERRAAQDFYWSAYRRLLLDKGWGAETVEDLGVATNAVVQRLADPTREEPYQSKGLVVGYVQSGKTANFTGVIAKAIDAGYRLVIVLTGTIELLRSQTQRRLDMELIGMQNIDEVGYANDEDWHAGKFLHHVLDPNHSNEAPAIRRLTGRVDDYKALAKGIGTLHYEFVDHSKPLFDPVNLYQSNVRVAVVKKNAAVLKKLVADVGRIPTPLDQIPTLIIDDEADQASVNTQNPKNFAAGRIERTAINEQISLLLERLGRSQYVGYTATPFANVFVDPDDSVNIFPNDFIVSLDRPKQYMGGADFHDGDTDLGDDLSETAEKTPANSNEKAFVRGLRAQCDEDRDAERLGALDSYVLAGAIKLFRQNRGVRGDFRHHTMLVHESVKQQEHESLAADFESLWKNAGYSQPHGLARLEELWDSDFRVVSADRAEPGTSTPQYFDELEGFIGEACDRIGAGISPVIIVNGAADKDYVQEPLDFQERSVWKILVGGTKLSRGFTVEGLTTTYYTRRTAQADTLMQMGRWFGFRPGYRDLVRLFIGREVPGPGGTVVDMYAAFEAIVGDEEEFRDELRRFKGLNEAGEPMVTPRDVPPMVFQRLPWLKPTATNKMYNAELSYRSVGGQSFSFTMQAPRGDGANNASHFRAVRPLLDALDRTGSFSFIDKDQTPRIFEARYGIVSADVVLDAISQFVWDANWDFEPHRKAFESAIERGALEDLAILLPIPKTKKPVMIGDYPRELPLVNRKREEAEYRTGFTGTAVRERDAIEHIAGNPKKDVGGPLAAQLRKRTRGAMILLFASDPPPRSRHIKSHKRGVADPRDVATLFSYALPYLADPSPKVGFTVRKDGAGAIVDA

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Crispr_ID: NC_016906_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016906_4

4578974-4579069

TypeV-U4

Consensus_repeat	Method
CGTCGCTAACGCTCCTCGACACCTCGACCA	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NC_016906_4

>merge|NC_016906|4|4578974-4579069|CRISPRCasFinder
CGTCGCTAACGCTCCTCGACACCTCGACCACCGAAAGAACGGCTCGTCGCTAACGCGTCGCTAACGCGTCGCTAACGCTCCTCGGCACCTCGACCA

>NC_016906|4|3|4578974-4579069|CRISPRCasFinder
CGTCGCTAACGCTCCTCGACACCTCGACCA	CCGAAAGAACGGCTCGTCGCTAACGCGTCGCTAACG
CGTCGCTAACGCTCCTCGGCACCTCGACCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_016906.1\|WP_014361315.1\|4589088_4589850_+\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|181325
NC_016906.1\|WP_014361309.1\|4574338_4575907_-\|protein-rep	unknown	unknown	gnl\|CDD\|366647
NC_016906.1\|WP_014361307.1\|4572683_4573358_-\|hypothetical-protein	unknown	unknown	unknown
NC_016906.1\|WP_014361312.1\|4581136_4581811_+\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NC_016906.1\|WP_006368182.1\|4580227_4581079_+\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NC_016906.1\|WP_043456707.1\|4568859_4569894_-\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|236122
NC_016906.1\|WP_148275508.1\|4571299_4572562_-\|transposase	c2c9_V-U4	-	gnl\|CDD\|284650
NC_016906.1\|WP_014361314.1\|4588030_4589092_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293811
NC_016906.1\|WP_006368183.1\|4579169_4580105_-\|cytochrome-c-oxidase-assembly-protein	unknown	unknown	gnl\|CDD\|378238
NC_016906.1\|WP_026919893.1\|4586591_4587755_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NC_016906.1\|WP_158512643.1\|4570009_4570390_-\|hypothetical-protein	unknown	unknown	unknown
NC_016906.1\|WP_043456715.1\|4576332_4577139_+\|hypothetical-protein	unknown	unknown	unknown
NC_016906.1\|WP_014361308.1\|4573558_4574206_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227893
NC_016906.1\|WP_006368178.1\|4583018_4583927_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NC_016906.1\|WP_006368180.1\|4581959_4582511_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NC_016906.1\|WP_148275507.1\|4567785_4568103_-\|hypothetical-protein	unknown	unknown	unknown
NC_016906.1\|WP_026919894.1\|4577251_4578913_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|367155
NC_016906.1\|WP_014361305.1\|4570806_4571088_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NC_016906.1\|WP_006368176.1\|4585634_4586582_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_016906.1\|WP_014361313.1\|4584000_4585575_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|283599

Protein	Function_ID	Function_description	E-value
NC_016906.1\|WP_014361309.1\|4574338_4575907_-\|protein-rep	gnl\|CDD\|366647	pfam01446, Rep_1, Replication protein. Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase.	8.27814e-08
NC_016906.1\|WP_014361312.1\|4581136_4581811_+\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	3.18405e-38
NC_016906.1\|WP_006368182.1\|4580227_4581079_+\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	3.30467e-137
NC_016906.1\|WP_043456707.1\|4568859_4569894_-\|ThiF-family-adenylyltransferase	gnl\|CDD\|236122	PRK07877, PRK07877, Rv1355c family protein.	9.00282e-40
NC_016906.1\|WP_148275508.1\|4571299_4572562_-\|transposase	gnl\|CDD\|284650	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain. This putative domain is found at the C-terminus of a large number of transposase proteins. This domain contains four conserved cysteines suggestive of a zinc binding domain. Given the need for transposases to bind DNA as well as the large number of DNA-binding zinc fingers we hypothesize this domain is DNA-binding.	8.43538e-16
NC_016906.1\|WP_014361314.1\|4588030_4589092_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293811	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1429 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.79994e-40
NC_016906.1\|WP_006368183.1\|4579169_4580105_-\|cytochrome-c-oxidase-assembly-protein	gnl\|CDD\|378238	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG). Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as found in Bacillus subtilis.	4.19702e-51
NC_016906.1\|WP_014361305.1\|4570806_4571088_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.32777e-11
NC_016906.1\|WP_014361315.1\|4589088_4589850_+\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|181325	PRK08252, PRK08252, crotonase/enoyl-CoA hydratase family protein.	1.22594e-132
NC_016906.1\|WP_006368178.1\|4583018_4583927_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	2.36056e-28
NC_016906.1\|WP_026919893.1\|4586591_4587755_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.52019e-127
NC_016906.1\|WP_006368180.1\|4581959_4582511_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	8.0561e-58
NC_016906.1\|WP_026919894.1\|4577251_4578913_+\|HNH-endonuclease	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	9.3353e-36
NC_016906.1\|WP_014361308.1\|4573558_4574206_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|227893	COG5606, COG5606, Uncharacterized conserved small protein [Function unknown].	6.17064e-20
NC_016906.1\|WP_006368176.1\|4585634_4586582_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	8.68452e-16
NC_016906.1\|WP_014361313.1\|4584000_4585575_-\|MFS-transporter	gnl\|CDD\|283599	pfam05977, MFS_3, Transmembrane secretion effector. This is a family of transport proteins. Members of this family include a protein responsible for the secretion of the ferric chelator, enterobactin, and a protein involved in antibiotic resistance.	1.1402e-126

>NC_016906.1|WP_026919894.1|4577251_4578913_+|HNH-endonuclease
MVDTALPDVSGLSTTQKLALAHRLVDSLASDDLTGLSNDDLVAVAQSTEQLITRVTVQGDRQIVEFSDRHLAREYGFGSITDAMIGLLRVSEPWRRWKQLKATATFHTFTGEVAAPKYPALAEAMASGAAGSSHAAVVIDVLDRIPAAVPFDEKMSADATMARYARTHTPSDLRILGARVLAHLDPDGQLTDDADRQRHRQIRIGRQDAQKMSGLSGQMTPTLTAHLEAVLAMWAAPGMNNPGDPESPTGSREDADPDALAAAAARDHRDQVQRNHDALEAVLRAGLDVGLGPQSHRGLPPHLIIKATLSELIAQTGMGVTATGTLLPITDVIALAAQCQPWLAVFDDHTSLPLYLGRARLASQGQRIALFAKDGGEYCSFPGCTQPAAHVEIHHATKDHAKGGLTNIGDLAPACGKHNRMVGDGPGQYTTGIYRDGPWAGRCWWRKNTPVGAAEPNPKRTNALPDVGVTFRATLDKVRADLHPPPDPLQRDADTDLAERDDRGSMLPTDRIRRSRVPIGHGYYDLVEIFTPDPGPDSPIETRLAHLLGDRGL
>NC_016906.1|WP_043456715.1|4576332_4577139_+|hypothetical-protein
MTRLRWAIPAAVLPFLFVAACGGAAATSDPRPVTTRFVTLPDSDGGHPVPFTPTTDHTYRPGVTIVDATASGPASQCTLGWPVTSSTGSRGDLTAGHCVSGLGQPTWLYTDSSETGRLPLSPYELHEDDSLADGTMLDAAAAFLPPTATAAQWVTPIDGHPIAGVMTPREAATLPRGTPVCMAGARAGLTCGPLLDANTRSLHWGGYAVVGDSGSAVFVVNPDQSVCAVGILHDGPADRDNTIAYVEPALQKWNLTIPVTAPHRLSPC
>NC_016906.1|WP_014361309.1|4574338_4575907_-|protein-rep
MPSTTLSTSVSADRRSRRGQTALWPDLDESQGGGAGQAGAQPRSEHGEGRGARSVGGGEAAAGQAPPPGDHGLGNTRGQRFRSTRDQRKRQRDSGAERRRVAARADARRERGTAREVARSVTRLDRVRQCGRPFPHGVAIRQAPSGSCSVAGVSTCGSVWVCPVCAHRIAVQRAMDLGRGIARWVAAGNSVILATFTVSHQRSDALADVWGALQTAQRRVVSGRAWQSDQAEYRIRGYHRTTECTLTWENGWHPHYHVLYFIDGAAPSASRLAGLKSRLFERWTAGLRRDGFDAGWEHGVDIRAMRIDNVAALDGDIERAMRENPSLAEYLTKSGARSAAQLTDGRRLALEALAHTGKGSQGGYTPFGLLGAIGELQSAADADATLGIESSEVLRQSLAWTVARWREWEKFSSGRRQVTMSRSDPRTGRVGLSRLLKLEVADVEDDALAESEPEQAVVVAVVTARDVRTLARRGVTTEHLAASVEQDGLDQVVQQCMSLGVELRLDEASIGLWEYEESLLRT
>NC_016906.1|WP_014361308.1|4573558_4574206_+|XRE-family-transcriptional-regulator
MSVWDDIMDTPADAANMRIRAALLRAVREHIDTFGWSQTTAATTLGITQPRVAELMNGHISKFSLDTLVTLADQVGVHVTVEADALAGDAAMSPSEAAKLLKMSRPHLLTFMNRGLLPYTLRGTERRIRVSDLLTFMDGREKGAALVADALGDDRPADNAREVPTSLRATEDGLGLTDILSEIREERALIDANRAKLDPHADAQLPWHTEQRPDQ
>NC_016906.1|WP_014361307.1|4572683_4573358_-|hypothetical-protein
MVLPEVPTSADAYIVVRHDGLAPIYVALDLEEDDVDVYFDDPAKDPAFEGYSWRLSSATTSTVHSFLSSIARDLQVIVDGVSWDDEDERHLTSEAQAAVFEIGRAADSFDGDVALWSDADMPVDGLVEAATTDEELREIAEATHADLLATTAVWWEGAHEALAEHREALRDDLRTELIEASEDHSSASVRRDELITEVAAFESSYSIAEMTNLSPSTVQRIIRG
>NC_016906.1|WP_148275508.1|4571299_4572562_-|transposase
MRAGERLGYIDTKSMPGYLSQRQWKDVVNQVNSTLRAWQEQMTAAVKPMISSLPGLSDETRRALYRANLAHEWWNDDVLAPIVRTLMRSTLPLPNFSRCSTMLLGTSVVVEDAAPDSPHALWARISRPPGQGTPIPIPLGGNRYEAAASGARANFMQITVPDAGSVLFRVVKHRPATPPRDSDSGYTLGVDWGLRTLAATSDGRLLGRKFYDWLAVRDRELTELGAALRRQGLRPRDSRRYRRLLSRIRGYVRNEVGRVINVLASDPDLTEIAVEDLDFRSPGLSRQMNRLLSRAGRGAWASKLRSLPADTGIAVTHVNSAYTSRQCSGCGYVDARNRLQQNRFKCLFCGKILHADINAARTIRQRRSVASGGLLMSKSAVLAELDQDFCHQWTADPGRLRERQLRPGSRAPRTSVRVNS
>NC_016906.1|WP_014361305.1|4570806_4571088_-|helix-turn-helix-domain-containing-protein
MSDYQQRRAKIVADLSPDERAVFDEAHAAAGLAMELAETVYRARETAGLTQTELARRMGTTQSVIAAIESGARAPTGDLIEGLARACGHRCRD
>NC_016906.1|WP_158512643.1|4570009_4570390_-|hypothetical-protein
MAISKLESVPVDMSRMELFFGSQRPAMRRENVNGERRETPKVRDGVAGVEVDVIVKVAGSEDKSTAKFTVYGPVSNFEDFEPLRVTGPVIANVWSTANGGAGLWFEVPGIVSATRGPAKATDKAGA
>NC_016906.1|WP_043456707.1|4568859_4569894_-|ThiF-family-adenylyltransferase
MREKDIQHRAVLVLTHGWDRSGFFAWSTGEQLVTALVVDAASDDEADLGQSAEQVLGVLGWTAGEALAHIAAERHLTVAETREWVNVQAIVVAVEMDRSPSRYDRQRALITPAEQQRLAGAVVSIAGMGVGASIAQQLAMVGVGTLRISDGDDIALTNLNRHPVAVNSDVGQPKTTVMAQYLGAFNPEVTVDVRDATDGLNVEVFCQASVVVDEVDCIATKWMMRWTARRLGVPVVMATDLGDERVLLDVERFDQDAKFPFHGLVDDAQTEGEVLTKLFRRHCSKDLWAALRIGSSFPQLGSTMAVASGVTARTVRDIIIGRAVPSGRYVYDLGLPVPESEGVR
>NC_016906.1|WP_148275507.1|4567785_4568103_-|hypothetical-protein
MTNADVWARRRRTVSLIRWSYWAVALLAAAIIGVVFLIGDSISFGIAAWLGTLFMAAVGFIPVWLLTAAIYRGAQASDAARTMWRDRHQGPPAVEPGGADNDLRF
>NC_016906.1|WP_006368183.1|4579169_4580105_-|cytochrome-c-oxidase-assembly-protein
MADALAPLTLHTVVSSWRVDVPTSVVVVLIAVAYVVAMRRSTLPWRRAVPFLVGVAVWLISACGFVGVYSDTLFWVRALQVVLVLMVVPFCLALGMPVTVARESWPAARSVIDRWLGTRAARVIASPAVTSAGVIVTPWLIYLTGWYPAMLRSDTVDTVTRVLLVLCGFGYFYARLQIDPVPRRYPQSLSLLVTLGETLGDGILGVVMWQGGLLAASYYEALHRTWGPSLRTDQTIGAGVFWVLGDVIGLPFLLVLFDRFRTDESRRAEIADAELDAAERESTRSTAAETESDQPSGLWWENNPELRERFR
>NC_016906.1|WP_006368182.1|4580227_4581079_+|polyphosphate-kinase-2
MGKKKHKKHSSNHDGHDEHVTTEPMTTEPMKNKEFRKLVKPLHVELVAMQEWVRTTGAKVCIVFEGRDTAGKGGVIKSITERVSPRVFRVVALPAPTEREKSQMYIQRYVPHLPAAGEVVIFDRSWYNRAGVERVMGFCTEEQTKQFLTEAPEYERSIVASGVILLKYWLEVSEGQQTLRLQSRIDDPRKYWKLSPMDLKSYTRWDDYTRARDDMFRFTDTGWAPWYVANTDDKKRGRLNVIRHILDQIPYTPLDRPDVELPKRKATGYEGPDLPLRRIPTLY
>NC_016906.1|WP_014361312.1|4581136_4581811_+|CoA-pyrophosphatase
MTWVEREVLSNRLSAFDRRAATTPGKAAAVAIVVVDRNSSNTDDADTNEREQGIWLLRRPMSMRRHAAQFALPGGRLDPGEDQTTAALRELHEEMGVALSPDDVIGMLDDYPTRSGYVITPVVCWAPHAPEPSPNPDEVSVWFFIPLDDLLVTPRFITIPESARPVIQMPIPGLHRDPDDHSPSGRTALVHAPTAAVLYQFAEVALRGRDTRVDEYEQPVFAWS
>NC_016906.1|WP_006368180.1|4581959_4582511_+|YceI-family-protein
MSTPTVTAPIAAGTWTIDPVHSTVGFSVKHLMVSKVRGKFDTFSGTITVAEDGTPSVQAEIDVTSITTGNEQRDGHIKSADFFDAETYPKATFTSTAVRPAGDDYVLTGDFTLHGVTKSVDLKLEFNGVNPGMGNGPVAGFEATTVLNRKDFGIDIEMPLEGGGVVVGDKVTITLEIEAGQGA
>NC_016906.1|WP_006368178.1|4583018_4583927_-|alpha/beta-fold-hydrolase
MSAAVLDRISRGLSLPGPSYLPVRDLPSGTMVELPGRGSTFVTDSGPADAPAIILQHSVMTTGLLCWYPVIPELNQRYRVITLDHRWHGRGIRSGTFDLLDCADDVVALADVLGVGRFVTAGFSMGGGISQLVWRRHHDRVAGLVLCSTGPYFSTRDPHLREQANKTGRLLKPVYRIIPRPSDATLDKPTSHTALWGMRQFLSTPLSHTGDFGEGLGRFDSRDWLAEIDVPTSVVVSVRDKVVEPERQQLLVDGIPGARRFDVDGGHACCVLGADKFVPEFLDAVDAVVRAGDPDSPRIVVP
>NC_016906.1|WP_014361313.1|4584000_4585575_-|MFS-transporter
MAMASGMAPLRNRVFRNLFIAQMVSNIGLWMQTVGAQWFLVDQHAGPTVISLVQTASLLPTLLLSLVAGVLADVLNRKWLLVVMSAYATVVAGVMAVLAAVDLLDPGMLLVLTFLLGAGSALSAPAFQAVNPEIVPREQIADAASLGSMSINVARAVGPALAGVLFTVGGAGVVFAINAVSYLAVVVALLRWRRPGDTSTMEPEHLGTSMVVGLRYVAAAPIVRRILVRSALFAFPASALWALLPLVVSNSFHFGSTGYGVVLGVLGCGAILGVLGLPWMRDHLSPNVILASSAVVFAVGTVAAALGSTVVALIVFVPAGVAWIATLSTLNAEMQLTLPAWVRARGMAAYLLVFMGSQGIGSLVWGALGGLLTVRWALLIAALALILAALAVAVLPIHAETGTLDRTLSTAWPEPMLVFEPAPDDGPVRVVATYRVDAEHHDEFVDAMAGVALSRRRTGARNWHLYRNGEDSDDYVEQFVVGSWSEYQRQRTERWTEYDHQRVSDALALTVDGRSRQEHLFTLR
>NC_016906.1|WP_006368176.1|4585634_4586582_+|alpha/beta-hydrolase
MMGIDRPKIEGSVAVEGGRRRIGFAEFGSATGRAVIWLHGTPGARRQIPTEARAYAAEHDIRLIGLDRPGVGSSTAHRYRCVAEFPGDLEPVLEALGIDRFAVIGMSGGGPYALATAHALPDRVMVAGIVGGVAPTVGPDAIGGGAMALGSLLAPAVRVAGAPLGKILSSALGVAAPIANPAIRLYGRFSPRADRELLARPEFRAMFLDDLLHGGSRRMEAPFADVVAFAQDWGFRVGDVTTPVRWWHGDHDHIIPYSHGIHMVSLLPDAKLFELPGESHLSALGMSTQILAELLSVWDDAERTPMMPAGPLIEP
>NC_016906.1|WP_026919893.1|4586591_4587755_-|CoA-transferase
MPDTPDDSLPLAGLTVVALEQAVAAPLATRHLADLGARVIKIERVGEGDFARHYDAEVEGLASHFVWLNRGKESFAVDLKQERGAAQVRALIDRADVFLQNLAPGAAARLGFDAQRLRAEHRELIVVNMSGYGPAGPMRDRKAYDMLVQAEAGLISVTGTAEHPAKTGVPTSDIAAGMYALTSILSALVRRGITGAGATIEVSMFDATVEWMGHPMYIAMHAGRQIPRCGVGHAAIVPYDAYPTRDGEILIGVQNDRGWRALARVLGRPELGDDPRYATNIERVARRAEVDDLVAARTATFDTAELDERLAAAGIPAAQIRDVAGVVDHPQLSARERWRMVDTEIGPIRALLPPFTFDDVEMRMGPVPALGEHTEAILAELGESTTG
>NC_016906.1|WP_014361314.1|4588030_4589092_+|MBL-fold-metallo-hydrolase
MVTGHRQRQAWAEKVLPPVEEVRPGVFSIPVPMPGNPLRYILVYALVTSAGGLALIDTGWNTDESWDTLVAGIHATGHDLSDITDVFITHLHPDHFGLVPRVLEHADPRLGMHRNDARFLYHRDEAQLAQELADAQVDLRELGAPTDVIDAGIREIVRLPQGRTMDVELVGDAPLDIPGWNLRAIWTPGHTAGHLCFADDDAGIIFTGDHLLPRISPNVSTNSFQNASPLADYLTSLANTEHLGDLEALPSHEYRFRGLAGRVTHLLSHHEERLTEITEAIADVPGSTAWDITRSVTWSRPFEQLSLPLSRMALRETNAHLLVLEERGIIARSGTEPVHWYVTTPTDREDTGR
>NC_016906.1|WP_014361315.1|4589088_4589850_+|crotonase/enoyl-CoA-hydratase-family-protein
MSPVTTEFADGVAVITIDRPEARNAVNAEVATLIAAAIDEFETRDDITVGILTGAGGTFCAGMDLKAFTRGEVPSVPGRGFGGVTEKPPSKPLIAAVEGWALAGGCELALSADLIVAAEDAKFGLPEVKRGLAAAAGGLLRLPKILPYQLAMEIALTGDPITAQRAHEFGLVNVLTPTGGALDGARELGARIAANGPLAVRATKQVVGMAIRYTDPDLVTAQRAVLDPIFASDDAQEGARAFAEKRAPLWTGR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_016906_1	1.1\|1390000\|18\|NC_016906\|CRT	1390000-1390017	18	NC_016906.1	2251042-2251059	1	0.944

1. spacer 1.1|1390000|18|NC_016906|CRT matches to position: 2251042-2251059, mismatch: 1, identity: 0.944

gcgccgacgcccttcgac	CRISPR spacer
gcgccgatgcccttcgac	Protospacer
*******.**********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016906_3	3.5\|3982558\|35\|NC_016906\|CRT,CRISPRCasFinder	3982558-3982592	35	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	352077-352111	7	0.8
NC_016906_3	3.16\|3983364\|38\|NC_016906\|CRT,CRISPRCasFinder	3983364-3983401	38	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	681368-681405	9	0.763

1. spacer 3.5|3982558|35|NC_016906|CRT,CRISPRCasFinder matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.8

gcatggtcagctcgatgccgggcaccgaatccctt	CRISPR spacer
ccaaggtcagctcgatgccgggcaacgatttctat	Protospacer
 ** ******************** *** *.*. *

2. spacer 3.16|3983364|38|NC_016906|CRT,CRISPRCasFinder matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 9, identity: 0.763

ccgcgaacggccccctgcgggtcaaggtggaccgacag	CRISPR spacer
acggcaccggcgccctgcgggtcaaggtggagcgggac	Protospacer
 **  * **** ******************* **. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

856866 : 886446

Gordonia_phage(28.57%)

protease,transposase,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014358740.1\|856866_858102_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.6e-82	45.4
WP_043456975.1\|858425_859748_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.7e-35	39.5
WP_014358742.1\|859974_860199_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	8.6e-19	87.0
WP_081484702.1\|860195_860630_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	1.4e-54	82.2
WP_052316390.1\|861168_861621_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_014358746.1\|862698_864048_+	dipeptidase	NA	NA	NA	NA
WP_014358747.1\|864053_865109_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_014358748.1\|865204_865876_-	lipocalin family protein	A0A2K9L4H1	Tupanvirus	5.6e-05	26.2
WP_193361573.1\|865984_866437_-	hypothetical protein	NA	NA	NA	NA
WP_006373134.1\|866778_866970_-	hypothetical protein	NA	NA	NA	NA
WP_014358750.1\|867025_867814_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_006373136.1\|867829_868234_-	hypothetical protein	NA	NA	NA	NA
WP_014358752.1\|868322_869018_-	haloacid dehalogenase type II	NA	NA	NA	NA
WP_014358753.1\|869031_870030_-	metallophosphoesterase	NA	NA	NA	NA
WP_014358754.1\|870101_872552_-	penicillin-binding protein	NA	NA	NA	NA
WP_006373141.1\|872863_873172_+	WhiB family transcriptional regulator	A0A159B6S6	Tsukamurella_phage	5.0e-09	47.8
WP_014358755.1\|873312_874845_-	hypothetical protein	NA	NA	NA	NA
WP_014358756.1\|874867_875962_-	ArsA family ATPase	NA	NA	NA	NA
WP_014358757.1\|875961_877059_-	ArsA family ATPase	NA	NA	NA	NA
WP_006373145.1\|877164_877329_+	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_014358758.1\|877333_877810_+	RidA family protein	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	1.4e-21	39.7
WP_014358759.1\|877886_878654_+	TSUP family transporter	NA	NA	NA	NA
WP_043456211.1\|878697_879561_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_014358761.1\|879661_880336_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_026920367.1\|880548_880761_-	hypothetical protein	NA	NA	NA	NA
WP_014358763.1\|880909_881731_+	endonuclease III	NA	NA	NA	NA
WP_043456216.1\|881727_882462_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_014358765.1\|882458_883298_+	CoA pyrophosphatase	NA	NA	NA	NA
WP_014358766.1\|883294_884488_+\|protease	MarP family serine protease	NA	NA	NA	NA
WP_014358767.1\|884484_884925_+	hypothetical protein	NA	NA	NA	NA
WP_014358768.1\|884949_885879_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_014358769.1\|885882_886446_-\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_2

1456923 : 1470367

Gordonia_phage(50.0%)

transposase,integrase

attL 1459662:1459721|attR 1466198:1467535

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148275423.1\|1456923_1457166_-	hypothetical protein	A0A142K9J8	Gordonia_phage	6.8e-30	83.8
WP_043456311.1\|1457726_1458059_-	hypothetical protein	A0A142K9J8	Gordonia_phage	3.2e-38	76.4
WP_014359206.1\|1458157_1458625_-	hypothetical protein	NA	NA	NA	NA
WP_014359207.1\|1459032_1459203_-	DUF3263 domain-containing protein	A0A160DCT7	Gordonia_phage	6.1e-17	73.2
1459662:1459721	attL	NA	NA	NA	NA
WP_085950232.1\|1459692_1460945_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	7.3e-107	66.0
WP_014359211.1\|1461134_1461392_+	hypothetical protein	M9MUE0	Rhodococcus_phage	1.6e-05	45.7
WP_193361576.1\|1461388_1461796_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	H6WZH1	Escherichia_phage	9.2e-11	35.1
WP_148275438.1\|1461852_1462596_-\|transposase	transposase	NA	NA	NA	NA
WP_014359213.1\|1462720_1463005_+	hypothetical protein	A0A2H4PA12	Gordonia_phage	1.1e-21	59.6
WP_014359214.1\|1463007_1463289_+	hypothetical protein	NA	NA	NA	NA
WP_014359215.1\|1463285_1463582_+	hypothetical protein	A0A2P1JR71	Mycobacterium_phage	1.1e-10	41.4
WP_014359216.1\|1463578_1463785_+	hypothetical protein	NA	NA	NA	NA
WP_158512629.1\|1463790_1463943_+	hypothetical protein	NA	NA	NA	NA
WP_014359218.1\|1464140_1464389_+	hypothetical protein	NA	NA	NA	NA
WP_014359219.1\|1464385_1464928_+	hypothetical protein	NA	NA	NA	NA
WP_014359220.1\|1465572_1465917_+	Lsr2 family protein	A0A160DEV0	Gordonia_phage	2.7e-11	33.6
WP_085950232.1\|1466228_1467481_-\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	7.3e-107	66.0
WP_014358448.1\|1468203_1469703_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
1466198:1467535	attR	NA	NA	NA	NA
WP_158512630.1\|1469806_1470367_-\|transposase	IS630 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016906

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection