CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP011014	Lactobacillus mucosae LM1 plasmid pLM1, complete sequence	2 crisprs	cas14j,DEDDh	0	8	9	1
NZ_CP011013	Lactobacillus mucosae LM1 chromosome, complete genome	5 crisprs	Cas14u_CAS-V,cas3,WYL,cas14j,DinG,DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,csn2,cas2,cas9,c2c9_V-U4	1	37	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011014_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011014_1

81645-81944

TypeV

Consensus_repeat	Method
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC	PILER-CR
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC	CRISPRCasFinder
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC	CRT

4 spacers

cas14j

The CRISPR arrays of NZ_CP011014_1

>merge|NZ_CP011014|1|81645-81944|PILER-CR,CRISPRCasFinder,CRT
GTTCAATACCTATGTGATTTGACATAGGTAACGGACTAGGTTGACAACCCATTTTCGATCTATTATGTTCAATACCTATGTGATTTGACATAGGTAACGGACTCTGTTTCTAGTCGTACCCGTGAATTTCTCGTTCAATACCTATGTGATTTGACATAGGTAACGGACCTATAGCAGCCCAAAAATGCGCAAGATTCAGTTCAATACCTATGCTGTTTGACATAGGTAACGAAGACAATAACAATCTAGAAATATGTGAGATTGGTTTAGTGCCTATATGTTTTGGCATAGGGAGTGGAC

>NZ_CP011014|1|1|81645-81812|PILER-CR
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC	TAGGTTGACAACCCATTTTCGATCTATTAT
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC	TCTGTTTCTAGTCGTACCCGTGAATTTCTC
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC

>NZ_CP011014|1|1|81645-81944|CRISPRCasFinder
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC	TAGGTTGACAACCCATTTTCGATCTATTAT
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC	TCTGTTTCTAGTCGTACCCGTGAATTTCTC
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC	CTATAGCAGCCCAAAAATGCGCAAGATTCA
GTTCAATACCTATGCTGTTTGACATAGGTAACGAAG	ACAATAACAATCTAGAAATATGTGAGATTG
GTTTAGTGCCTATATGTTTTGGCATAGGGAGTGGAC

>NZ_CP011014|1|1|81645-81878|CRT
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC	TAGGTTGACAACCCATTTTCGATCTATTAT
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC	TCTGTTTCTAGTCGTACCCGTGAATTTCTC
GTTCAATACCTATGTGATTTGACATAGGTAACGGAC	CTATAGCAGCCCAAAAATGCGCAAGATTCA
GTTCAATACCTATGCTGTTTGACATAGGTAACGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011014.1\|WP_006501110.1\|85927_86437_+\|nucleoside-2-deoxyribosyltransferase	unknown	unknown	gnl\|CDD\|377443
NZ_CP011014.1\|WP_039946386.1\|76086_76395_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_039946389.1\|79587_80328_+\|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl\|CDD\|377432
NZ_CP011014.1\|WP_039946406.1\|86905_87133_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501098.1\|73882_75373_+\|replication-protein	unknown	unknown	gnl\|CDD\|223382
NZ_CP011014.1\|WP_006501102.1\|78648_78990_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501108.1\|85255_85435_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_039946398.1\|84787_85015_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_045025675.1\|71738_72842_+\|metallophosphoesterase-family-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_158423341.1\|86726_86900_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501104.1\|82001_83306_+\|transposase	cas14j	-	gnl\|CDD\|223747
NZ_CP011014.1\|WP_006501099.1\|75557_76109_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501097.1\|73579_73867_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501109.1\|85436_85922_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_045025666.1\|87632_87989_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_039946394.1\|83841_84558_+\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|224345
NZ_CP011014.1\|WP_158423340.1\|84609_84774_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501101.1\|76395_78645_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273632
NZ_CP011014.1\|WP_006501096.1\|72844_73576_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_158423339.1\|80398_80566_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011014.1\|WP_006501110.1\|85927_86437_+\|nucleoside-2-deoxyribosyltransferase	gnl\|CDD\|377443	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.	1.31928e-18
NZ_CP011014.1\|WP_006501104.1\|82001_83306_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.53827e-35
NZ_CP011014.1\|WP_006501098.1\|73882_75373_+\|replication-protein	gnl\|CDD\|223382	COG0305, DnaB, Replicative DNA helicase [DNA replication, recombination, and repair].	1.90951e-10
NZ_CP011014.1\|WP_006501101.1\|76395_78645_+\|AAA-family-ATPase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	1.21967e-106
NZ_CP011014.1\|WP_039946389.1\|79587_80328_+\|nicotinamide-mononucleotide-transporter	gnl\|CDD\|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	8.12215e-27
NZ_CP011014.1\|WP_039946394.1\|83841_84558_+\|deoxynucleoside-kinase	gnl\|CDD\|224345	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism].	4.16901e-47

>NZ_CP011014.1|WP_158423339.1|80398_80566_+|hypothetical-protein
MLNNRKRRYKALNRYLRWWRGEHPDKMVAKEHKHDANRYARRKAKQRLSKIIEKD
>NZ_CP011014.1|WP_039946389.1|79587_80328_+|nicotinamide-mononucleotide-transporter
MDNVKKQNYFVWLFNQLKGWAMQNYMLFFFAFGFQLALLIGSPINSVTLITFIGTMLGTLCVLAINATKAINGWLGLISAACFVYAGWSAKNYLSIFEQIAYVVTLDLPVIFAVRSWNDDTKNHLRRFGSKQWLVAIVATLIVYVVSGYLIGRFTNDPRPWIDAISFAISLTAGIMCFMRYNNQYYWWLASGIFQLVLWAVTFAQGDATLAMAVNSLIYVVNDILAFTVSPWFNRGRRQAGLTEMK
>NZ_CP011014.1|WP_006501102.1|78648_78990_+|hypothetical-protein
MRFIDYNGQKVRITRTYEVNGKQFMDLKGLNNGKEYRSVPVHKIERAETVRKQKIQDAKTVVFEDKHGNKTELVFGTGAYVAFIKKHGLNQAAIDNCLKGLTKTHKGFKVYMK
>NZ_CP011014.1|WP_006501101.1|76395_78645_+|AAA-family-ATPase
MPDERVEFTAKLKKYIYKASDSDYKVASIDVSDATSNRVARNPWGSVTLTGKFTMMKNVEYLVVAEKQDNAKYGVQYSLVNIKRKNPIEEMSAGDFQRFLIAINPIKGGLINKTYPDARAIFEKQDVEALTKIKGIGEKTALALFNKYESQKDYSPAYAVYSEWGFTNQTVKRICKHFGSVDKAVLVLERNPYELMNVGGIGFKTIDAKALENGIAANDKRRVRAFVMDYFDNLTMSGSSWTSISNLTGFLNKEIFDCDIEDTIDWVANSGLFIVKTVNGVERVTRASDYQDEKDIAKDLIRLRDAQSWIKTIKRVGSIVKGIEDEQGWEYSDEQKHAISKILKQNVVLLQGSGGVGKTSIMKAVIKVLRENGYTVASCALSGKASDNLTQVTGLQGRTIHRLLGIGGAPNAQYNSDNPLPYNVVVLDEVSMVDTGLLAKLLRAIPSGAKFIMIGDSAQLDSIGVGTMRDIIDSHVIPTVTLETIHRQAKKSAIITHSLQYRYGQMPKDVTEKDSWKLKGENKDLGYVFEPYSNESNLLADAYKVFRYVLKRYDVKDVQIITPMTKNCDQLNTMAQRVVNPESPDKHEYENKTKGFVLREGDKVLNVANNYKTVDVTGENILPIFNGNTGIIEKIDVDESDQDNNEVEITVDFDGIGKVLLSGKQVESLRLGYAMTVHKSQGSTIPCVIIVLPFQYMLNSRELLYTAITRASQECYMLTSMRTLKATIKKSSATVHHSNLIDMLKKEGE
>NZ_CP011014.1|WP_039946386.1|76086_76395_+|hypothetical-protein
MTLSELPKDSTFTLRRDFNMTKFLLIAKPDEAFKTARDGDSTFVRTNTSSNIKLKDNIELDEDNVVALIKAKRKVLIYYEMEKRLDCYNVDEFEMLDKVVRC
>NZ_CP011014.1|WP_006501099.1|75557_76109_+|hypothetical-protein
MSSIFSNEFYERLHNLEAKYHIDEWGSTLVDDDPELLWCQQYIKDHLDTQSAIEKDNFKTHVEEEIMRGNCSVKKLAKKFGMSEGTMRKKIDECHLTKFWLMYRAYLNGVVVYNDDEMMFVKDKHDVADLLGMANTHSVYWAIRNDRKINSYHVVPVKRWRMVYPDLDINMEECLYNDVIRIA
>NZ_CP011014.1|WP_006501098.1|73882_75373_+|replication-protein
MSSAKQSSNESTFVKSKFYKEIEQQKRIIESQFVLSLYKNTNYYFDYDIKVNEFSSPIWRFYYQMLKEMVEERKLRKMDVVTVSAYVQSKNDKLQQLFKKCGGYETIDKGMKIVEAENVDGYYSELQRYKTVLRLVECGFPIEQNWDKYSKMDLETLNEVLEGLVAEAFVDTQIGNDKVEDMFDGVDEMLERADQGVDQGLPIGSHLMDSIQHGLALGNITMMAANSGVGKTFLTTMLHIMSSITNQEPVLIIANEEEKARYAQGLITTYINHKHPDANFNKSRFIMGGFTDQEWEYLNEAKDWYKRKVYDGLVRFVNMNAFSMTKTIRLIKKYARLYDVRYFILDTLKLDNDADSRVTDNSWLQLQQNMVKLYNTIKPSNLNVHVWVTAQMTKSNRRAKYLDQSMIGMAKNVTDVVSSLMLVRMMSQSEKVGDKALRIIKEDGHQALLDEDKDYMIVFWDKNRQGQTSRQVVLEVDRGLNIVRDIGKTQINNDLE
>NZ_CP011014.1|WP_006501097.1|73579_73867_+|hypothetical-protein
MVELDKDILIALDNNIMLGTVGADMLSKAVIKQKHIKEILEQTGGINHDNFEDFFDELLRAYVSDSILGNLFTADELVMLAASERGFMASKLNLE
>NZ_CP011014.1|WP_006501096.1|72844_73576_+|hypothetical-protein
MAKQKPKSKLIKPSTAKLDGKSYYECYYCGGRVNASQAVIKPIALQVAIKDKDEGTTKHVTKYIERPFHLDCLQKYVKERGDIDVMHAENSEWDDVYQYFKREYMKVPAGVSFDKRFPNTKIGDYIANRLLGLRTGQFMPHGTNTRVIKRGYSFKEILNTLKYCKRSVDYARETVEFTDLKHEVNYFMRIVESKIDFIVMRMLKAEEQKNRVDRMLKQDNKMKQPEPKIEYKRKGTGKRKVEF
>NZ_CP011014.1|WP_045025675.1|71738_72842_+|metallophosphoesterase-family-protein
MQQEGYMDSDTNENYRCLIKHYQHKIGQLPSVAKHAEMVASNKLQAIKNEIGNINSAKLALQEQARKVRKLVRDTNKDELLIEEIGNAIRQGTFVKASNPVVLPDINSDKDADLIVCLSDIHYGAHVDIPENYYDTKVVARLMDLYAEKVIKLIDETGAQSVDIVNLGDIVEHAYMRNQNLYDSEETLSEQIVNVTRLIIEFIQRIRNHAEIITYRGIAGNHDRMQGDKNSNLNADHAVNISNRIIQMWIEVTGSDVQFVETDSYFAEIMLRGYHFAFVHGDRDNLSNKNTLAKVSENHDRHYDAVIGGHVHKFSMLEVGNNRYQVTFGSFKGMDDYSKRLGVSSSRSQGVVIVNDRGFEIRKIGLQ
>NZ_CP011014.1|WP_006501104.1|82001_83306_+|transposase
MTKEYKGIKIRIYPNKQQANSIDEFGASARHMWNELLAMQKARYQAFNEMYGDADEETKKIHRKGVYVPKFGMTYLLKPFKQEQGHEWAKHMPSQALQNVCSDVDASFQKFFAKQGGFPRFKSWRQHNDSFSFQQGCVALDEHHIKFPKLGVMKYRGYDGLTNYKIKAATLRKAKDGFYYASCRVEHESMVMPKTNKQVGIDLGVKDLAILSNGVKYDKLENTYKHYLWSKHRLVDWQKKYSRRLERAKKTIAMNDQYEKQFGKSLTGQHRLEDFSNLNKARMMVGRWHAKVANQRKDYLQKLTTELVKDYDLIVIEDLKASNMMKNHNLARSIAEASFFEFRRELEYKCKWYGKQLVIVAPNYTSQICSDCGFHSGKKTLDIREWDCPNCGVHHDRDINAAKNILNKGLEQLKNEVSNKTKKKTTKKSNKKVA
>NZ_CP011014.1|WP_039946394.1|83841_84558_+|deoxynucleoside-kinase
MIYVNAPIGIGKTSLTKILTKDLGTKGYYENVDDIPMLQDFYNAGEDSRKQYSFALQIAFLNYRYQQLREGLYLAETQGMANTVYDSSLLSDGLMAFNLYKRGEFPQNMYDLYINLNQNMVANVSGHPFNGHPDLIIYLDAPFELMLEHIQKRGRDMEVTDPELVDYYHSVWETYKHWYESYSQSNVLCIDMNQYDFVNNVDDRNKVLDMIEQRLVQLGKLSKTEFQTIKDKRYSQSA
>NZ_CP011014.1|WP_158423340.1|84609_84774_+|hypothetical-protein
MNRKALIVPVLGLSTPLLTGCVNKVSHYDGIIALDTGSHIFTVPQNATVDITKN
>NZ_CP011014.1|WP_039946398.1|84787_85015_+|hypothetical-protein
MKNVVVNTSIVMVVGASLIPIVLAVVFIPLLRYLAGLFLFYLLFQLALNGVIEEVKAEQQAKIVEDEEQSNKKAA
>NZ_CP011014.1|WP_006501108.1|85255_85435_+|hypothetical-protein
MDVEKQLLSYIQQIIKADMPDDLKVKMIFDQAMTMARTRENLIFDQLSARFKEAVKEEY
>NZ_CP011014.1|WP_006501109.1|85436_85922_+|hypothetical-protein
MSENAMFKLGLYARLERIAEEAFELFKQRREIEGWLDGDTSISFISDLELKWLKAQYHALGEALDALGKQREAIKVVLDNPNVFDKHEASDKTDLITKLKDEEYELSDKLNKLSTFLLDSDKTAQINDEQLRLLQMQQQAMANYHRILVARIFNLETDKGE
>NZ_CP011014.1|WP_006501110.1|85927_86437_+|nucleoside-2-deoxyribosyltransferase
MTKNIKQVPNTKIYLATSFFNGAQKARLFDALKALEPNQTVGVIHQPFDFQYKDARIDHDPDGIFGTLEWQVATYNNDVNAVGNSDVCVALYDMDEPDEGICFEIGMFVAMHKPIVLLPFTKKDPSEYEANLMLARGVTTWLKPNDTLQLSTFNFNHPMANPVVPFKVF
>NZ_CP011014.1|WP_158423341.1|86726_86900_+|hypothetical-protein
MATKRQKLHKELTRTEHNERWFYKSADRIDRLNHISKRALGLPRNYRLKAIRKLKGS
>NZ_CP011014.1|WP_039946406.1|86905_87133_+|hypothetical-protein
MEQKNTNMLLEGRPTIYVVNWTEIDDYGQLQRQEAFSNKDAAWEFMMSLPKQSYASIIALKLWDINPSNLIKSMV
>NZ_CP011014.1|WP_045025666.1|87632_87989_+|hypothetical-protein
MKMKYINQLTDDELEKLYATFIKSYGEFKVKWLDAFKDYPTITLDGSYYALNADNAETLFVYFEINDYGVFSNDNNDIDWFGYDTELTKIMRKFMLNKFGKQYMEDCFWNDFVGEDYD

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Crispr_ID: NZ_CP011014_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011014_2

83455-83754

TypeV

Consensus_repeat	Method
GGTATGTGCCTATGCAATTTGATATAGGTACTGCAC	CRISPRCasFinder
GGTATGTGCCTATGCNATNTGATATAGGTACTGCAC	CRT

4 spacers

cas14j

The CRISPR arrays of NZ_CP011014_2

>merge|NZ_CP011014|2|83455-83754|CRISPRCasFinder,CRT
GGTATGTGCCTATGCAATTTGATATAGGTACTGCACATAAAAGCCACATTTTATTGAGCAGTCATTGGTATGTGCCTATGCAATTTGATATAGGTACTGCACTAAGGACGTTAGCTTATGGTGAACGGACTGGGTATGTGCCTATGCAATTTGATATAGGTACTGCACTATAGCCCAGTGCCGTCAACATCTGCTAAAGGTATGCGCCTATGCGATATGATATAGGTACTGCACGAAGAACGTTTGCAACAAATAAACGTAAGGGGTATGTGCCTATACGGTATGACGTAGGTACTGCAT

>NZ_CP011014|2|2|83455-83754|CRISPRCasFinder
GGTATGTGCCTATGCAATTTGATATAGGTACTGCAC	ATAAAAGCCACATTTTATTGAGCAGTCATT
GGTATGTGCCTATGCAATTTGATATAGGTACTGCAC	TAAGGACGTTAGCTTATGGTGAACGGACTG
GGTATGTGCCTATGCAATTTGATATAGGTACTGCAC	TATAGCCCAGTGCCGTCAACATCTGCTAAA
GGTATGCGCCTATGCGATATGATATAGGTACTGCAC	GAAGAACGTTTGCAACAAATAAACGTAAGG
GGTATGTGCCTATACGGTATGACGTAGGTACTGCAT

>NZ_CP011014|2|2|83455-83754|CRT
GGTATGTGCCTATGCAATTTGATATAGGTACTGCAC	ATAAAAGCCACATTTTATTGAGCAGTCATT
GGTATGTGCCTATGCAATTTGATATAGGTACTGCAC	TAAGGACGTTAGCTTATGGTGAACGGACTG
GGTATGTGCCTATGCAATTTGATATAGGTACTGCAC	TATAGCCCAGTGCCGTCAACATCTGCTAAA
GGTATGCGCCTATGCGATATGATATAGGTACTGCAC	GAAGAACGTTTGCAACAAATAAACGTAAGG
GGTATGTGCCTATACGGTATGACGTAGGTACTGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011014.1\|WP_039946386.1\|76086_76395_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501104.1\|82001_83306_+\|transposase	cas14j	-	gnl\|CDD\|223747
NZ_CP011014.1\|WP_039946406.1\|86905_87133_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501098.1\|73882_75373_+\|replication-protein	unknown	unknown	gnl\|CDD\|223382
NZ_CP011014.1\|WP_006501102.1\|78648_78990_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501108.1\|85255_85435_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_039946398.1\|84787_85015_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_158423341.1\|86726_86900_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_039946389.1\|79587_80328_+\|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl\|CDD\|377432
NZ_CP011014.1\|WP_006501097.1\|73579_73867_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501099.1\|75557_76109_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501110.1\|85927_86437_+\|nucleoside-2-deoxyribosyltransferase	unknown	unknown	gnl\|CDD\|377443
NZ_CP011014.1\|WP_006501109.1\|85436_85922_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_039946299.1\|87981_88269_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_045025666.1\|87632_87989_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_158423340.1\|84609_84774_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501101.1\|76395_78645_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273632
NZ_CP011014.1\|WP_158423339.1\|80398_80566_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_006501096.1\|72844_73576_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011014.1\|WP_039946394.1\|83841_84558_+\|deoxynucleoside-kinase	unknown	unknown	gnl\|CDD\|224345

Protein	Function_ID	Function_description	E-value
NZ_CP011014.1\|WP_006501110.1\|85927_86437_+\|nucleoside-2-deoxyribosyltransferase	gnl\|CDD\|377443	pfam05014, Nuc_deoxyrib_tr, Nucleoside 2-deoxyribosyltransferase. Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyzes the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides.	1.31928e-18
NZ_CP011014.1\|WP_006501104.1\|82001_83306_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.53827e-35
NZ_CP011014.1\|WP_039946394.1\|83841_84558_+\|deoxynucleoside-kinase	gnl\|CDD\|224345	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism].	4.16901e-47
NZ_CP011014.1\|WP_006501101.1\|76395_78645_+\|AAA-family-ATPase	gnl\|CDD\|273632	TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity].	1.21967e-106
NZ_CP011014.1\|WP_039946389.1\|79587_80328_+\|nicotinamide-mononucleotide-transporter	gnl\|CDD\|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	8.12215e-27
NZ_CP011014.1\|WP_006501098.1\|73882_75373_+\|replication-protein	gnl\|CDD\|223382	COG0305, DnaB, Replicative DNA helicase [DNA replication, recombination, and repair].	1.90951e-10

>NZ_CP011014.1|WP_006501104.1|82001_83306_+|transposase
MTKEYKGIKIRIYPNKQQANSIDEFGASARHMWNELLAMQKARYQAFNEMYGDADEETKKIHRKGVYVPKFGMTYLLKPFKQEQGHEWAKHMPSQALQNVCSDVDASFQKFFAKQGGFPRFKSWRQHNDSFSFQQGCVALDEHHIKFPKLGVMKYRGYDGLTNYKIKAATLRKAKDGFYYASCRVEHESMVMPKTNKQVGIDLGVKDLAILSNGVKYDKLENTYKHYLWSKHRLVDWQKKYSRRLERAKKTIAMNDQYEKQFGKSLTGQHRLEDFSNLNKARMMVGRWHAKVANQRKDYLQKLTTELVKDYDLIVIEDLKASNMMKNHNLARSIAEASFFEFRRELEYKCKWYGKQLVIVAPNYTSQICSDCGFHSGKKTLDIREWDCPNCGVHHDRDINAAKNILNKGLEQLKNEVSNKTKKKTTKKSNKKVA
>NZ_CP011014.1|WP_158423339.1|80398_80566_+|hypothetical-protein
MLNNRKRRYKALNRYLRWWRGEHPDKMVAKEHKHDANRYARRKAKQRLSKIIEKD
>NZ_CP011014.1|WP_039946389.1|79587_80328_+|nicotinamide-mononucleotide-transporter
MDNVKKQNYFVWLFNQLKGWAMQNYMLFFFAFGFQLALLIGSPINSVTLITFIGTMLGTLCVLAINATKAINGWLGLISAACFVYAGWSAKNYLSIFEQIAYVVTLDLPVIFAVRSWNDDTKNHLRRFGSKQWLVAIVATLIVYVVSGYLIGRFTNDPRPWIDAISFAISLTAGIMCFMRYNNQYYWWLASGIFQLVLWAVTFAQGDATLAMAVNSLIYVVNDILAFTVSPWFNRGRRQAGLTEMK
>NZ_CP011014.1|WP_006501102.1|78648_78990_+|hypothetical-protein
MRFIDYNGQKVRITRTYEVNGKQFMDLKGLNNGKEYRSVPVHKIERAETVRKQKIQDAKTVVFEDKHGNKTELVFGTGAYVAFIKKHGLNQAAIDNCLKGLTKTHKGFKVYMK
>NZ_CP011014.1|WP_006501101.1|76395_78645_+|AAA-family-ATPase
MPDERVEFTAKLKKYIYKASDSDYKVASIDVSDATSNRVARNPWGSVTLTGKFTMMKNVEYLVVAEKQDNAKYGVQYSLVNIKRKNPIEEMSAGDFQRFLIAINPIKGGLINKTYPDARAIFEKQDVEALTKIKGIGEKTALALFNKYESQKDYSPAYAVYSEWGFTNQTVKRICKHFGSVDKAVLVLERNPYELMNVGGIGFKTIDAKALENGIAANDKRRVRAFVMDYFDNLTMSGSSWTSISNLTGFLNKEIFDCDIEDTIDWVANSGLFIVKTVNGVERVTRASDYQDEKDIAKDLIRLRDAQSWIKTIKRVGSIVKGIEDEQGWEYSDEQKHAISKILKQNVVLLQGSGGVGKTSIMKAVIKVLRENGYTVASCALSGKASDNLTQVTGLQGRTIHRLLGIGGAPNAQYNSDNPLPYNVVVLDEVSMVDTGLLAKLLRAIPSGAKFIMIGDSAQLDSIGVGTMRDIIDSHVIPTVTLETIHRQAKKSAIITHSLQYRYGQMPKDVTEKDSWKLKGENKDLGYVFEPYSNESNLLADAYKVFRYVLKRYDVKDVQIITPMTKNCDQLNTMAQRVVNPESPDKHEYENKTKGFVLREGDKVLNVANNYKTVDVTGENILPIFNGNTGIIEKIDVDESDQDNNEVEITVDFDGIGKVLLSGKQVESLRLGYAMTVHKSQGSTIPCVIIVLPFQYMLNSRELLYTAITRASQECYMLTSMRTLKATIKKSSATVHHSNLIDMLKKEGE
>NZ_CP011014.1|WP_039946386.1|76086_76395_+|hypothetical-protein
MTLSELPKDSTFTLRRDFNMTKFLLIAKPDEAFKTARDGDSTFVRTNTSSNIKLKDNIELDEDNVVALIKAKRKVLIYYEMEKRLDCYNVDEFEMLDKVVRC
>NZ_CP011014.1|WP_006501099.1|75557_76109_+|hypothetical-protein
MSSIFSNEFYERLHNLEAKYHIDEWGSTLVDDDPELLWCQQYIKDHLDTQSAIEKDNFKTHVEEEIMRGNCSVKKLAKKFGMSEGTMRKKIDECHLTKFWLMYRAYLNGVVVYNDDEMMFVKDKHDVADLLGMANTHSVYWAIRNDRKINSYHVVPVKRWRMVYPDLDINMEECLYNDVIRIA
>NZ_CP011014.1|WP_006501098.1|73882_75373_+|replication-protein
MSSAKQSSNESTFVKSKFYKEIEQQKRIIESQFVLSLYKNTNYYFDYDIKVNEFSSPIWRFYYQMLKEMVEERKLRKMDVVTVSAYVQSKNDKLQQLFKKCGGYETIDKGMKIVEAENVDGYYSELQRYKTVLRLVECGFPIEQNWDKYSKMDLETLNEVLEGLVAEAFVDTQIGNDKVEDMFDGVDEMLERADQGVDQGLPIGSHLMDSIQHGLALGNITMMAANSGVGKTFLTTMLHIMSSITNQEPVLIIANEEEKARYAQGLITTYINHKHPDANFNKSRFIMGGFTDQEWEYLNEAKDWYKRKVYDGLVRFVNMNAFSMTKTIRLIKKYARLYDVRYFILDTLKLDNDADSRVTDNSWLQLQQNMVKLYNTIKPSNLNVHVWVTAQMTKSNRRAKYLDQSMIGMAKNVTDVVSSLMLVRMMSQSEKVGDKALRIIKEDGHQALLDEDKDYMIVFWDKNRQGQTSRQVVLEVDRGLNIVRDIGKTQINNDLE
>NZ_CP011014.1|WP_006501097.1|73579_73867_+|hypothetical-protein
MVELDKDILIALDNNIMLGTVGADMLSKAVIKQKHIKEILEQTGGINHDNFEDFFDELLRAYVSDSILGNLFTADELVMLAASERGFMASKLNLE
>NZ_CP011014.1|WP_006501096.1|72844_73576_+|hypothetical-protein
MAKQKPKSKLIKPSTAKLDGKSYYECYYCGGRVNASQAVIKPIALQVAIKDKDEGTTKHVTKYIERPFHLDCLQKYVKERGDIDVMHAENSEWDDVYQYFKREYMKVPAGVSFDKRFPNTKIGDYIANRLLGLRTGQFMPHGTNTRVIKRGYSFKEILNTLKYCKRSVDYARETVEFTDLKHEVNYFMRIVESKIDFIVMRMLKAEEQKNRVDRMLKQDNKMKQPEPKIEYKRKGTGKRKVEF
>NZ_CP011014.1|WP_039946394.1|83841_84558_+|deoxynucleoside-kinase
MIYVNAPIGIGKTSLTKILTKDLGTKGYYENVDDIPMLQDFYNAGEDSRKQYSFALQIAFLNYRYQQLREGLYLAETQGMANTVYDSSLLSDGLMAFNLYKRGEFPQNMYDLYINLNQNMVANVSGHPFNGHPDLIIYLDAPFELMLEHIQKRGRDMEVTDPELVDYYHSVWETYKHWYESYSQSNVLCIDMNQYDFVNNVDDRNKVLDMIEQRLVQLGKLSKTEFQTIKDKRYSQSA
>NZ_CP011014.1|WP_158423340.1|84609_84774_+|hypothetical-protein
MNRKALIVPVLGLSTPLLTGCVNKVSHYDGIIALDTGSHIFTVPQNATVDITKN
>NZ_CP011014.1|WP_039946398.1|84787_85015_+|hypothetical-protein
MKNVVVNTSIVMVVGASLIPIVLAVVFIPLLRYLAGLFLFYLLFQLALNGVIEEVKAEQQAKIVEDEEQSNKKAA
>NZ_CP011014.1|WP_006501108.1|85255_85435_+|hypothetical-protein
MDVEKQLLSYIQQIIKADMPDDLKVKMIFDQAMTMARTRENLIFDQLSARFKEAVKEEY
>NZ_CP011014.1|WP_006501109.1|85436_85922_+|hypothetical-protein
MSENAMFKLGLYARLERIAEEAFELFKQRREIEGWLDGDTSISFISDLELKWLKAQYHALGEALDALGKQREAIKVVLDNPNVFDKHEASDKTDLITKLKDEEYELSDKLNKLSTFLLDSDKTAQINDEQLRLLQMQQQAMANYHRILVARIFNLETDKGE
>NZ_CP011014.1|WP_006501110.1|85927_86437_+|nucleoside-2-deoxyribosyltransferase
MTKNIKQVPNTKIYLATSFFNGAQKARLFDALKALEPNQTVGVIHQPFDFQYKDARIDHDPDGIFGTLEWQVATYNNDVNAVGNSDVCVALYDMDEPDEGICFEIGMFVAMHKPIVLLPFTKKDPSEYEANLMLARGVTTWLKPNDTLQLSTFNFNHPMANPVVPFKVF
>NZ_CP011014.1|WP_158423341.1|86726_86900_+|hypothetical-protein
MATKRQKLHKELTRTEHNERWFYKSADRIDRLNHISKRALGLPRNYRLKAIRKLKGS
>NZ_CP011014.1|WP_039946406.1|86905_87133_+|hypothetical-protein
MEQKNTNMLLEGRPTIYVVNWTEIDDYGQLQRQEAFSNKDAAWEFMMSLPKQSYASIIALKLWDINPSNLIKSMV
>NZ_CP011014.1|WP_045025666.1|87632_87989_+|hypothetical-protein
MKMKYINQLTDDELEKLYATFIKSYGEFKVKWLDAFKDYPTITLDGSYYALNADNAETLFVYFEINDYGVFSNDNNDIDWFGYDTELTKIMRKFMLNKFGKQYMEDCFWNDFVGEDYD
>NZ_CP011014.1|WP_039946299.1|87981_88269_+|hypothetical-protein
MTKTDDFIKKIEQLDPHLKVTTYHDLCNYTLDKVNMIIWYVNDGDLKMPFVTFTYINGVPVVETDCNRFAKDDLVLYGKIINLCTEYFSFLYEED

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011014_1	1.1\|81681\|30\|NZ_CP011014\|PILER-CR,CRISPRCasFinder,CRT	81681-81710	30	NZ_CP011014	Lactobacillus mucosae LM1 plasmid pLM1, complete sequence	81681-81710	0	1.0
NZ_CP011014_1	1.2\|81747\|30\|NZ_CP011014\|PILER-CR,CRISPRCasFinder,CRT	81747-81776	30	NZ_CP011014	Lactobacillus mucosae LM1 plasmid pLM1, complete sequence	81747-81776	0	1.0
NZ_CP011014_1	1.3\|81813\|30\|NZ_CP011014\|CRISPRCasFinder,CRT	81813-81842	30	NZ_CP011014	Lactobacillus mucosae LM1 plasmid pLM1, complete sequence	81813-81842	0	1.0
NZ_CP011014_1	1.4\|81879\|30\|NZ_CP011014\|CRISPRCasFinder	81879-81908	30	NZ_CP011014	Lactobacillus mucosae LM1 plasmid pLM1, complete sequence	81879-81908	0	1.0
NZ_CP011014_2	2.1\|83491\|30\|NZ_CP011014\|CRISPRCasFinder,CRT	83491-83520	30	NZ_CP011014	Lactobacillus mucosae LM1 plasmid pLM1, complete sequence	83491-83520	0	1.0
NZ_CP011014_2	2.2\|83557\|30\|NZ_CP011014\|CRISPRCasFinder,CRT	83557-83586	30	NZ_CP011014	Lactobacillus mucosae LM1 plasmid pLM1, complete sequence	83557-83586	0	1.0
NZ_CP011014_2	2.3\|83623\|30\|NZ_CP011014\|CRISPRCasFinder,CRT	83623-83652	30	NZ_CP011014	Lactobacillus mucosae LM1 plasmid pLM1, complete sequence	83623-83652	0	1.0
NZ_CP011014_2	2.4\|83689\|30\|NZ_CP011014\|CRISPRCasFinder,CRT	83689-83718	30	NZ_CP011014	Lactobacillus mucosae LM1 plasmid pLM1, complete sequence	83689-83718	0	1.0
NZ_CP011014_1	1.4\|81879\|30\|NZ_CP011014\|CRISPRCasFinder	81879-81908	30	KM983333	Clostridium phage phiCTC2A, complete genome	27600-27629	7	0.767
NZ_CP011014_1	1.4\|81879\|30\|NZ_CP011014\|CRISPRCasFinder	81879-81908	30	KM983330	Clostridium phage phiCT19406A, complete genome	27600-27629	7	0.767
NZ_CP011014_2	2.3\|83623\|30\|NZ_CP011014\|CRISPRCasFinder,CRT	83623-83652	30	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	424402-424431	8	0.733
NZ_CP011014_2	2.3\|83623\|30\|NZ_CP011014\|CRISPRCasFinder,CRT	83623-83652	30	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1505019-1505048	8	0.733

1. spacer 1.1|81681|30|NZ_CP011014|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011014 (Lactobacillus mucosae LM1 plasmid pLM1, complete sequence) position: , mismatch: 0, identity: 1.0

taggttgacaacccattttcgatctattat	CRISPR spacer
taggttgacaacccattttcgatctattat	Protospacer
******************************

2. spacer 1.2|81747|30|NZ_CP011014|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011014 (Lactobacillus mucosae LM1 plasmid pLM1, complete sequence) position: , mismatch: 0, identity: 1.0

tctgtttctagtcgtacccgtgaatttctc	CRISPR spacer
tctgtttctagtcgtacccgtgaatttctc	Protospacer
******************************

3. spacer 1.3|81813|30|NZ_CP011014|CRISPRCasFinder,CRT matches to NZ_CP011014 (Lactobacillus mucosae LM1 plasmid pLM1, complete sequence) position: , mismatch: 0, identity: 1.0

ctatagcagcccaaaaatgcgcaagattca	CRISPR spacer
ctatagcagcccaaaaatgcgcaagattca	Protospacer
******************************

4. spacer 1.4|81879|30|NZ_CP011014|CRISPRCasFinder matches to NZ_CP011014 (Lactobacillus mucosae LM1 plasmid pLM1, complete sequence) position: , mismatch: 0, identity: 1.0

acaataacaatctagaaatatgtgagattg	CRISPR spacer
acaataacaatctagaaatatgtgagattg	Protospacer
******************************

5. spacer 2.1|83491|30|NZ_CP011014|CRISPRCasFinder,CRT matches to NZ_CP011014 (Lactobacillus mucosae LM1 plasmid pLM1, complete sequence) position: , mismatch: 0, identity: 1.0

ataaaagccacattttattgagcagtcatt	CRISPR spacer
ataaaagccacattttattgagcagtcatt	Protospacer
******************************

6. spacer 2.2|83557|30|NZ_CP011014|CRISPRCasFinder,CRT matches to NZ_CP011014 (Lactobacillus mucosae LM1 plasmid pLM1, complete sequence) position: , mismatch: 0, identity: 1.0

taaggacgttagcttatggtgaacggactg	CRISPR spacer
taaggacgttagcttatggtgaacggactg	Protospacer
******************************

7. spacer 2.3|83623|30|NZ_CP011014|CRISPRCasFinder,CRT matches to NZ_CP011014 (Lactobacillus mucosae LM1 plasmid pLM1, complete sequence) position: , mismatch: 0, identity: 1.0

tatagcccagtgccgtcaacatctgctaaa	CRISPR spacer
tatagcccagtgccgtcaacatctgctaaa	Protospacer
******************************

8. spacer 2.4|83689|30|NZ_CP011014|CRISPRCasFinder,CRT matches to NZ_CP011014 (Lactobacillus mucosae LM1 plasmid pLM1, complete sequence) position: , mismatch: 0, identity: 1.0

gaagaacgtttgcaacaaataaacgtaagg	CRISPR spacer
gaagaacgtttgcaacaaataaacgtaagg	Protospacer
******************************

9. spacer 1.4|81879|30|NZ_CP011014|CRISPRCasFinder matches to KM983333 (Clostridium phage phiCTC2A, complete genome) position: , mismatch: 7, identity: 0.767

acaataacaatctagaaatatgtgagattg	CRISPR spacer
attataacaatttagaaataagtgagaaat	Protospacer
*. ********.******** ******

10. spacer 1.4|81879|30|NZ_CP011014|CRISPRCasFinder matches to KM983330 (Clostridium phage phiCT19406A, complete genome) position: , mismatch: 7, identity: 0.767

acaataacaatctagaaatatgtgagattg	CRISPR spacer
attataacaatttagaaataagtgagaaat	Protospacer
*. ********.******** ******

11. spacer 2.3|83623|30|NZ_CP011014|CRISPRCasFinder,CRT matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 8, identity: 0.733

tatagcccagtgccgtcaacatctgctaaa	CRISPR spacer
tatagcccagcgccgtcaacagcccggcga	Protospacer
**********.********** *.    .*

12. spacer 2.3|83623|30|NZ_CP011014|CRISPRCasFinder,CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.733

tatagcccagtgccgtcaacatctgctaaa	CRISPR spacer
caaagcccagtgccgtgaacatcagcacgc	Protospacer
.* ************* ****** **  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 6155

Oenoccocus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039946422.1\|390_1668_-	LysM peptidoglycan-binding domain-containing protein	Q6EVN0	Oenoccocus_phage	6.7e-124	57.4
WP_006501037.1\|1871_2885_-	hypothetical protein	A0A0U1ZU90	Staphylococcus_phage	6.8e-47	37.3
WP_006501038.1\|2903_3587_-	hypothetical protein	NA	NA	NA	NA
WP_006501039.1\|3604_4987_-	hypothetical protein	NA	NA	NA	NA
WP_006501040.1\|5006_5402_-	hypothetical protein	NA	NA	NA	NA
WP_006501041.1\|5414_6155_-	hypothetical protein	A0A0H3V0Q5	Geobacillus_virus	2.0e-27	35.4

DBSCAN-SWA_2

10926 : 20442

Brevibacillus_phage(100.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039946330.1\|10926_20442_-\|tail	phage tail tape measure protein	A0A0K2FL55	Brevibacillus_phage	2.1e-20	22.4

DBSCAN-SWA_3

23879 : 33090

Lactobacillus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052669353.1\|23879_24239_-	hypothetical protein	A0A2H4PBB2	Lactobacillus_phage	9.0e-10	55.6
WP_006501051.1\|24243_24519_-	hemolysin XhlA family protein	NA	NA	NA	NA
WP_006501052.1\|24645_24933_-	hypothetical protein	A0A1B0Y3N0	Lactobacillus_phage	1.8e-08	45.2
WP_006501053.1\|25000_25189_-	hypothetical protein	NA	NA	NA	NA
WP_148313174.1\|25181_25514_-	hypothetical protein	V9QJA4	Oenococcus_phage	1.0e-12	40.8
WP_045025660.1\|25528_30766_-	hypothetical protein	E4ZFN3	Streptococcus_phage	4.5e-09	24.6
WP_045025661.1\|30878_31850_-	hypothetical protein	NA	NA	NA	NA
WP_039946343.1\|31989_33090_-	fibronectin type III domain-containing protein	A0A0H3UZ43	Geobacillus_virus	6.6e-11	35.8

DBSCAN-SWA_4

36705 : 42990

Bacillus_phage(66.67%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006501062.1\|36705_37689_-	hypothetical protein	A0A218KCB5	Bacillus_phage	6.6e-39	30.3
WP_006501063.1\|37708_38158_-	hypothetical protein	NA	NA	NA	NA
WP_006501064.1\|38190_39855_-	hypothetical protein	A0A0K2FMA5	Brevibacillus_phage	1.7e-34	31.7
WP_006501065.1\|39864_41409_-	hypothetical protein	NA	NA	NA	NA
WP_148313175.1\|41421_42990_-\|terminase	terminase	A0A1P8CWR6	Bacillus_phage	3.0e-102	41.8

DBSCAN-SWA_5

49145 : 49988

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039946353.1\|49145_49988_+	AAA family ATPase	F0PIG8	Enterococcus_phage	2.7e-49	42.3

DBSCAN-SWA_6

56861 : 57182

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006501077.1\|56861_57182_+	hypothetical protein	A0A060AF46	Staphylococcus_phage	3.7e-07	45.3

DBSCAN-SWA_7

63965 : 64418

Lactobacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039946373.1\|63965_64418_+	hypothetical protein	F8J1H2	Lactobacillus_phage	9.9e-06	45.8

DBSCAN-SWA_8

69442 : 84558

Lactobacillus_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006501093.1\|69442_70570_+	hypothetical protein	A0A218KBY0	Bacillus_phage	7.2e-05	27.4
WP_039946382.1\|70595_71540_+	AAA family ATPase	Q332H0	Clostridium_botulinum_C_phage	3.4e-40	38.1
WP_045025675.1\|71738_72842_+	metallophosphoesterase family protein	A0A218KCD4	Bacillus_phage	2.9e-59	38.1
WP_006501096.1\|72844_73576_+	hypothetical protein	NA	NA	NA	NA
WP_006501097.1\|73579_73867_+	hypothetical protein	NA	NA	NA	NA
WP_006501098.1\|73882_75373_+	replication protein	Q332G8	Clostridium_botulinum_C_phage	8.5e-62	31.1
WP_006501099.1\|75557_76109_+	hypothetical protein	NA	NA	NA	NA
WP_039946386.1\|76086_76395_+	hypothetical protein	NA	NA	NA	NA
WP_006501101.1\|76395_78645_+	AAA family ATPase	A0A0K2FLP8	Brevibacillus_phage	1.4e-84	32.0
WP_006501102.1\|78648_78990_+	hypothetical protein	NA	NA	NA	NA
WP_039946389.1\|79587_80328_+	nicotinamide mononucleotide transporter	A0A0A7NTY4	Lactobacillus_phage	2.4e-134	94.3
WP_158423339.1\|80398_80566_+	hypothetical protein	NA	NA	NA	NA
WP_006501104.1\|82001_83306_+\|transposase	transposase	A0A2K9VD29	Lactobacillus_phage	9.0e-92	45.7
WP_039946394.1\|83841_84558_+	deoxynucleoside kinase	A0A2K9VCW4	Lactobacillus_phage	3.1e-86	68.4

DBSCAN-SWA_9

87632 : 107369

Lactobacillus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045025666.1\|87632_87989_+	hypothetical protein	A0A0A7NQQ2	Lactobacillus_phage	8.0e-27	58.3
WP_039946299.1\|87981_88269_+	hypothetical protein	A0A0A7NTY8	Lactobacillus_phage	1.2e-25	57.0
WP_039946300.1\|88271_88517_+	hypothetical protein	NA	NA	NA	NA
WP_039946302.1\|88529_88790_+	hypothetical protein	A0A0A7NNI8	Lactobacillus_phage	3.7e-13	52.3
WP_039946304.1\|88805_89042_+	hypothetical protein	NA	NA	NA	NA
WP_006501017.1\|89056_89629_+	3'-5' exonuclease	NA	NA	NA	NA
WP_006501018.1\|89637_89865_+	hypothetical protein	NA	NA	NA	NA
WP_052669366.1\|89959_90418_+	hypothetical protein	O03945	Lactobacillus_phage	6.1e-11	32.6
WP_006501019.1\|91354_91978_-	thymidine kinase	A0A1W6JKV9	Lactococcus_phage	1.6e-51	54.6
WP_006501020.1\|91997_92441_-	hypothetical protein	NA	NA	NA	NA
WP_039946305.1\|92443_92635_-	hypothetical protein	NA	NA	NA	NA
WP_039946308.1\|92841_93072_-	hypothetical protein	NA	NA	NA	NA
WP_006501022.1\|93132_93477_-	hypothetical protein	NA	NA	NA	NA
WP_039946310.1\|93502_93886_-	hypothetical protein	NA	NA	NA	NA
WP_006501023.1\|93900_95172_-	phosphatidylglycerophosphatase A	A0A291I9Q0	Lactobacillus_phage	3.2e-33	45.0
WP_039946312.1\|95189_95585_-	hypothetical protein	NA	NA	NA	NA
WP_006501025.1\|95578_96280_-	site-specific DNA-methyltransferase	A0A1W6JMZ7	Lactococcus_phage	4.5e-74	56.1
WP_006501026.1\|96319_96463_-	hypothetical protein	NA	NA	NA	NA
WP_006501027.1\|96820_97609_-	DNA cytosine methyltransferase	A0A191KBU6	Streptococcus_virus	6.3e-56	44.3
WP_006501028.1\|97767_98007_-	hypothetical protein	NA	NA	NA	NA
WP_052669371.1\|98014_98491_-	DUF1064 domain-containing protein	A0A1I9KKZ1	Lactobacillus_phage	4.2e-39	54.8
WP_148313184.1\|98595_99936_-	ligase	A0A0H3UZH0	Geobacillus_virus	3.1e-79	39.3
WP_148313181.1\|99958_100375_-	hypothetical protein	NA	NA	NA	NA
WP_148313182.1\|100408_103684_-	DNA polymerase III subunit alpha	A0A218KC91	Bacillus_phage	4.3e-191	35.5
WP_052669369.1\|103702_104287_-	hypothetical protein	A0A1S5SCI4	Streptococcus_phage	2.7e-11	34.0
WP_148313183.1\|104340_105483_-	PD-(D/E)XK nuclease family protein	Q332G6	Clostridium_botulinum_C_phage	2.1e-36	30.6
WP_039946319.1\|105524_105932_-	hypothetical protein	NA	NA	NA	NA
WP_039946322.1\|105945_106344_-	hypothetical protein	NA	NA	NA	NA
WP_039946324.1\|106325_107369_-	DNA primase	Q332G7	Clostridium_botulinum_C_phage	1.1e-36	32.2

Anti-CRISPR protein detection

Acr_ID: NZ_CP011014.1|WP_006501038.1|2903_3587_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP011014.1|WP_006501038.1|2903_3587_-|hypothetical-protein

2903_3587_-

227 aa aa

0-6155

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP011013_5	TypeII	5.2\|1511719\|27\|NZ_CP011013\|CRISPRCasFinder,CRT	1511719-1511745	27	5469-5443	2

1. spacer 5.2|1511719|27|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP011014 position: 5469-5443, mismatch: 2

tggtacgaatacgccaattcacccaag	CRISPR spacer
tggcacaaatacgccaattcacccaag	Protospacer
***.**.********************

2. NZ_CP011013

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP011013_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011013_1

180312-180399

Unclear

Consensus_repeat	Method
CTCGTTCCCCCTAACATATTGATAAAA	CRISPRCasFinder

1 spacers

Cas14u_CAS-V

The CRISPR arrays of NZ_CP011013_1

>merge|NZ_CP011013|1|180312-180399|CRISPRCasFinder
CTCGTTCCCCCTAACATATTGATAAAATCCCATAGTCAGAAAACATATACTTTGAAAGTATCTCGTTCCCCCTAACATATTGATAAAA

>NZ_CP011013|1|1|180312-180399|CRISPRCasFinder
CTCGTTCCCCCTAACATATTGATAAAA	TCCCATAGTCAGAAAACATATACTTTGAAAGTAT
CTCGTTCCCCCTAACATATTGATAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011013.1\|WP_006500547.1\|165118_166162_-\|galactose-mutarotase	unknown	unknown	gnl\|CDD\|185696
NZ_CP011013.1\|WP_158423321.1\|180653_181106_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273725
NZ_CP011013.1\|WP_006500529.1\|184621_185311_-\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226172
NZ_CP011013.1\|WP_039945995.1\|184315_184561_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_039946001.1\|172346_174440_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP011013.1\|WP_006500532.1\|183791_184115_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_039945996.1\|183444_183780_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_006500528.1\|185629_185893_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP011013.1\|WP_006500527.1\|185895_186087_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP011013.1\|WP_039946002.1\|168305_168953_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP011013.1\|WP_039946003.1\|166994_168275_-\|GTPase-HflX	unknown	unknown	gnl\|CDD\|274455
NZ_CP011013.1\|WP_006500536.1\|178230_179784_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP011013.1\|WP_006500538.1\|176352_177588_+\|transposase	Cas14u_CAS-V	-	gnl\|CDD\|223747
NZ_CP011013.1\|WP_039946000.1\|174739_175663_+\|type-I-pantothenate-kinase	unknown	unknown	gnl\|CDD\|235466
NZ_CP011013.1\|WP_034540666.1\|166378_166945_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP011013.1\|WP_006500542.1\|169857_172161_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226482
NZ_CP011013.1\|WP_039946035.1\|169032_169680_-\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182775
NZ_CP011013.1\|WP_052669123.1\|182047_183385_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP011013.1\|WP_006500531.1\|184107_184326_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_006500535.1\|181172_181643_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011013.1\|WP_006500547.1\|165118_166162_-\|galactose-mutarotase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	8.52426e-127
NZ_CP011013.1\|WP_158423321.1\|180653_181106_-\|hypothetical-protein	gnl\|CDD\|273725	TIGR01637, Putative_autolysin_regulatory_protein_ArpU, phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions].	1.19908e-08
NZ_CP011013.1\|WP_006500529.1\|184621_185311_-\|Rha-family-transcriptional-regulator	gnl\|CDD\|226172	COG3646, COG3646, Uncharacterized phage-encoded protein [Function unknown].	9.13839e-18
NZ_CP011013.1\|WP_039946001.1\|172346_174440_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	1.48115e-144
NZ_CP011013.1\|WP_006500528.1\|185629_185893_-\|DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	4.91893e-07
NZ_CP011013.1\|WP_006500527.1\|185895_186087_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.51569e-08
NZ_CP011013.1\|WP_039946002.1\|168305_168953_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.53759e-49
NZ_CP011013.1\|WP_039946003.1\|166994_168275_-\|GTPase-HflX	gnl\|CDD\|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	1.5538e-159
NZ_CP011013.1\|WP_006500536.1\|178230_179784_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP011013.1\|WP_006500538.1\|176352_177588_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.47445e-22
NZ_CP011013.1\|WP_039946000.1\|174739_175663_+\|type-I-pantothenate-kinase	gnl\|CDD\|235466	PRK05439, PRK05439, pantothenate kinase; Provisional.	0
NZ_CP011013.1\|WP_034540666.1\|166378_166945_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.14676e-08
NZ_CP011013.1\|WP_006500542.1\|169857_172161_+\|AAA-family-ATPase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	6.60568e-136
NZ_CP011013.1\|WP_039946035.1\|169032_169680_-\|VTT-domain-containing-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	8.8275e-40
NZ_CP011013.1\|WP_052669123.1\|182047_183385_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	9.68017e-10

>NZ_CP011013.1|WP_006500536.1|178230_179784_+|glutamine-hydrolyzing-GMP-synthase
MANVNLDAFDKILVLDFGSQYNQLITRRIRDFGIYSELLSHKLSAEEIKEMHPKGIIFSGGPNSVYAKDAFKVDPEIYKLGIPILGICYGMQLMSYDLGGKVEPADDSEYGRADIEVIDDDAVMFKGLPKKQYVWMSHGDRVVEAPEGFKVVATSKNCPISAIANDEKKLYGIQFHAEVRNSQYGLDILKKFAFDVCGAKANWSMDDFIDMQVESIRKEVGDKKVILGLSGGVDSSVTAVLIHKAIGDQLTCIFVDHGLLRKNEADEVMNALSRDLGVKIVKVDAADRFLGKLKGVSDPEQKRKIIGKEFVEVFNEEAKKMKDAEYLAQGTLYTDVIESGTDTAQTIKSHHNVGGLPKKLGFKLIEPLRSLFKDETRELGEKLGIPHDLVWRQPFPGPGLGIRVLGEITPEKLEIVRESDAILREEIKKAGLDEEIWQYFTVLPGIRSVGVMGDGRTYDYAVGIRAVTSIDGMTADFAKIPWDVLQKISVRIVNEVDHVNRILYDVTSKPPSTIEWE
>NZ_CP011013.1|WP_006500538.1|176352_177588_+|transposase
MQQAITIKCKLKLQSPLDESALAKSLENYRQACNAVSQYMFNHSFEMAQAKLNRALYHQLRKDYGLKAQMAQSAIRNVVARYRTVKTQLAQKPYRYNTGRQDQYGNDIWENESRTLDWLWYPISFKRPQLDLQRNRDWSLKDNHVMSINTVNGRIKAPFTCQGFDQYLDGTWQFGMAKILHVGSKWYMHISATKELPDYLKEQSQHVVGIDRGLRFLATVYDEQGKTLFFQGQEVMRKRRKFKRLRQQLQSKGTKSAKRRLKKIGQRENRWMTDVNHQLSKTLVNRYGADTLFVLENLVNVRFATEKVAKAKRYEQVSWAFYQLGQFLTYKARLVGSEVVQVSAKYTSQRCPKCGRIWKNNRNHQEHLYVCDRCGYKSNDDRIGAMNIQLLGTQYISGNERPSFSKLITNE
>NZ_CP011013.1|WP_039946000.1|174739_175663_+|type-I-pantothenate-kinase
MDEWLNYDRFDRETWHSFFPYGKTFLTQENLEDIKSLNDQISLADVREVYLPLIKLIQLQYQNYLQMQLQKMTFLRKPMRRIPYIIGIAGSVAVGKSTSARLLQILLKRLMPDKQVELITTDGFIYPNRELEKRGIMARKGFPESYDMEKLLTFLNDVNAGKDYVQAPIYSHSVYDIVPDEYQVIEKPDVLIVEGINVLQLPTTQRIYVSDFFDFAVYIDAEPELIEQWYLERFGMLLDTAFQDPSNYYYPYTKGSRQQAFAMARKVWDMVDLPNLRDYILPTRNRADVILHKAENHHIDRIYLRED
>NZ_CP011013.1|WP_039946001.1|172346_174440_+|LTA-synthase-family-protein
MKTALQKVRRGLNTKLGFFLLTVLLFAIKSYWAYKTKFNLGISDSMQQFLLAFNTLPGALVFLGIALYFRGRLSYWLMILINFLLSTWLFANILYYREFSDFITFNIIKGSGAASNNLGKSLMGIIKPTDFLVYADVIILIVLLAAHFIRIDMRYFKVRYAMTITMIGFVLFGANLAMAEKDRPQLLTRTFDNNYIVKYLGLQAYTIYDGVKTTHNSAVKAKANSNDIKPVLKFLKKNYASPNIEYYGQAKGKNIIIIHLESFQQFMIDYKWKGEEVTPNLNKLYHASDTISFDNFFNQVGQGKTADAELMLENSLYGLPEGSAMVTDGTTNTFQSAPALLEQKLGYTTASFHGDVPSFWNRDNAYKSFGYQYFFSKDYLPKVKDEDMGYGVKDKLFLKESAYYLEQLPQPFYAKLITVSNHYPYIIDKKNTSIKSWNTGDSTVDHYVQTARYLDESVGELLNYLDSTGLRKNTMLVLYGDHYGISNNHKAAIAQILGKKSVDNYDLAMFQKVPFMINMEGLKGGVNHTYGGEIDVLPTIEDLLGISSNKYVQFGQDLLSKNRNQIVPFRNGDWVTNKYTKYNGDYYYTSSGKEIKSPTKAQKAEFAKIQKYVTTDLGLSDKVVNGDLLRFYKLKGFKTVNKKSYSYTLKNGLKQLKQAQKKSKTSLKSQNNNQSTLDQYTTDAPELKGVTLKFPTK
>NZ_CP011013.1|WP_006500542.1|169857_172161_+|AAA-family-ATPase
MTESIQQYEQHHLEQVVKEVRKAEEKASGTIENAKRDVKGLSKQFNDIHMNTTTYSGMMDTAMSVRAQQQMLDERENSWQHAADRLSTLKRLEAKPYFARIDFLEKGAQKPETIYIGLASFSDRPDHFLVYDWRAPISSIYYDGKLGPVTYETPVGKQEVDVRLKRQFQIEDGTIVTLYDTDEAVTDQMLLSALGTHSSTKMKSIVTTIQKTQNEIIRDAKDELLFVQGAAGSGKTAAVLQRVAWLLYRYRGNLTASQVVLFSPNQLFNDYIDQVLPELGEHNMVQMTYFQYVNRRVPRLHVQTLQQRFESSQAAVDQNINRLLTSLSSFKAVGAYARALGQRGLRFRNLMFHGKPFFTKEQIKTIYYSFNRNYNLGNRLDATKDALDHQLRSRVGGAMRSKWAEAAVQSLSKEQMDAMMNNRPREFESDKQEYNFYAKQIVLKEFAPIHRAIRHNMWININAQYLLFLKALPKMVDLQKFDLTEQQWVAFIEKTTQDLKERQISAAGISIYLYLYDLLTGKRGERDIRYVFVDEVQDYDAFQLAYLKFSFPNARFTLLGDLNQAIFTGANSRQLLRQLGTMFDPEKTKVVQLTKSYRSTKQITDFTKHILKDGEKIEAFERQGKRPSIYQLTNLNDAVAQVVAVLKDYQEQHDAVAIIGKTLADSEQIYQLLAEQGVKATLIRTENQRLVDGVLVVPSYLAKGLEFDAVIVWDANDQKYHGDSERQLLYTICSRAMHDLTIVSVGQASQLFADVPSQEYELTDRLS
>NZ_CP011013.1|WP_039946035.1|169032_169680_-|VTT-domain-containing-protein
MAKLLYALTHIPQVILPLFNSLGNWTYVILFSLIFMETGLVVFPWLPGQSLIFVTSSFAALHGAEVKMSILVPGFFIAAVLGDTLNYLIGTRLIKWSWLKRRLAGPTMEKAQLFFSRYGLRAIIFGRFVPLIRTFVPLISGIAKYRFGRFMLGNVLGVAIWVVSGALAGYYLGSIPFVQAHFSTLLLGLVICGSLPAVFFNLIKRIRRHIIERNL
>NZ_CP011013.1|WP_039946002.1|168305_168953_-|histidine-phosphatase-family-protein
MAVNVYFVRHGQTYLNLFHKYQGWSDAPLTEKGIEDGKRVGKALAKIDFDYLFCSDMRRTVKTAELLAASHPTKIVHPESDPAFREVFFGFFEGEDTAAASMNIGLCRSYDELVSKYSVEKARDITKAADPFHLAENDAEFWQRMDKGLDRLRNLPDGSTAVVVSHGAAIRSIVSRYAKDKALANDAPVNGSITKLSLTPDQTEIVFYNQLSLPE
>NZ_CP011013.1|WP_039946003.1|166994_168275_-|GTPase-HflX
MDTNIQSAEPVIIIGLNMDQEDYEYSMEELAALAEANQMEVIDRLDQALDRPNPATYFGSGKVEELRHLAEAEEVATVIANDELTPSQLQNLADQTGVRILDRTALILEIFAKRAQSREAKIQVEIAQLQYQLPRLQTAANQRLDQQTGGGSGFTNRGAGETKLEMNRRTINHKISHLRAELKEIAKSEDVKRAKREKSDTPTAALVGYTNAGKSTIMNQLVSRFGVSEEKQVFEKNMLFATLDTSVRQLTLPDQKRFLLSDTVGFVSKLPTHLIEAFKSTLAEAASADLLIQVIDYSDPNYEAMMRTTEKTLKQIGIENIPMLYVFNKADQTEFEYPVMEGDNRIIISAKDDESIQLLVQALRRHLFKDYVLTELLIPFADGRTVSYVNENCNILETEYLNNGTRLKVEMSPQDFARFERYVIKN
>NZ_CP011013.1|WP_034540666.1|166378_166945_+|TetR/AcrR-family-transcriptional-regulator
MKMNRTVRDFQNALESLLKTHQFGHLTIDQICNEALLHRSSFYRYFHDKYDLLEQTISTRLNILIDQSDRNEDEFVEILIKYVSDNRDIFRNLADSSSQSSLYGEIMKIVSEILLRQRHVTENQDTIVTALRNSKNPEMLAYILSGSILGAFYWWRQNNYEVPQQDVIDFVKQSMHNLSDQMERDGLN
>NZ_CP011013.1|WP_006500547.1|165118_166162_-|galactose-mutarotase
MEIKESSFGTFEGQEVKKYTLINDQDMQVSVLNYAGLLQEISVPGKDGKRVNLVLSAADIEHFTDNGMCNNRVIGRVAGRLAKGEFAIDGQEYHVDTNENGNTLHGGPNGLGNQFFEAETVTTPNTVKVVLTKTMTPEIDSFPGNEKVTVTYSLSNDNRVVIDLDGKTDANTLFNPTVHTYFNLGDSDVATVEDQVLQVNSKFHLDVDDEKIPTGKKLVNAGTPFDFQTPRRLGDALNEMKSTKEGGFDDIWQVEPSTNVNHEPVATLSDPASGRKMKLYSDRNGLVMYTANGMDKSLQFNRPSASWCALAMEAQTLSDTPHHPEFGDITLRPGKPAHHRIVYAIEF
>NZ_CP011013.1|WP_158423321.1|180653_181106_-|hypothetical-protein
MNGDESLGVLFEFEPVNEKETNLQVKEFFDKDVQKLQDLANETLQGIMKSPSFDGIGSADHATNKSEEHYIRVVDAKNELEIIAKAINNCPALSKKILNLRFVQGLQQWQIKEQLSLSSNKQYQKYRRKAYCDFADQYSRYGRDLRIMND
>NZ_CP011013.1|WP_006500535.1|181172_181643_-|hypothetical-protein
MQKKIEYPALVEQMHAYLISRGINNVSKLTLFNEMVKDGMINKNGQPTAKALENGLIEAADYNDLNPIQQFKADYPQFSAVPDKFFQVDEQNNVLIGFKGFAWYASRLINDENASIQELNATKQILALYKQRGLTDQSEQQANSLIESIDRLSSAK
>NZ_CP011013.1|WP_052669123.1|182047_183385_-|helix-turn-helix-domain-containing-protein
MESENIKRSNWDAILPAKVRYDSRLKGEAKVLYSEILLLSSQKGYCYATDKYLAESYSSSQRSINRHIASLKKLGYIKIETKRQGKRVTERRIYPLELPKMAIADTEKGTAKIGDTYQGSKENFTRGIDKVGNTLVGTDKIGNRGIDKIGNRGIDKIGNRGIDKIGVVNDSNSNESNINKEIEKEGQSTSDCPTPFIEFKNLYWYENKLGSLEPKIKMLLRKYLTSIPVDIIQYAIDKTAKKDNLKSSYGYLKKVLEDYQTKNIQTLDDLERLNAERYKQNGINDLNESSNGKQQSETKSISEWQKEQQAISQHDIDENRKYGLPEWFDAKMRETELATEKERESNSLDDTKSESKQPDDKANNDNQQDKTKVKDGQPVIIQKTPAERPKMTQGEQINIALGIAALQNGERLTKYQIDLIERFDDRKEDLELLRAYKHQAGIKVR
>NZ_CP011013.1|WP_039945996.1|183444_183780_-|hypothetical-protein
MSQYQNKRMTKDERRLIEFLPKGSERPRPLKELSKLLYGDAESNNTRKTRRIINSLVINYEIPVGSKHNRPNGYFLITNEAERQTALKTLDAQSADLINRAAHLQKASFWR
>NZ_CP011013.1|WP_006500532.1|183791_184115_-|hypothetical-protein
MNDLTVITIEHPESGRKALLLTESGENSLIENGITGARIEQKAIEDKTALFINTPDDKTALLIGDETLLNDLEAFKSANTKKIHLALDGLSGQLKAAVQRLIDIYLN
>NZ_CP011013.1|WP_006500531.1|184107_184326_-|hypothetical-protein
MSDKTDFWAEYFKQPSPDKETIEFNKQLDKGIQEMFDDSELLDKETIEFDQWLEKEIQKKLFNTESEDNEHE
>NZ_CP011013.1|WP_039945995.1|184315_184561_-|hypothetical-protein
MQKISFKLLDLLETNISDIDNASKILSDYFEELTDTEPDLLKAKLADVSPLIDLMLKTIYNAVDAANDKLRVIDEAQSNER
>NZ_CP011013.1|WP_006500529.1|184621_185311_-|Rha-family-transcriptional-regulator
MDTEKIIKAAGNAELAKNFNDLVFLGNVTEEPYTTDEIVAAYSGYDLHSVKDLIRRHEKRLKKFGRLNAYDTRKIGRGRPVKTYRLNEPQATALITYLGNTKRVLDFKDNLVAAFFKIRNEKLEQIKNRARSIPERRTLTDAIQNWPNCNQWTYKTITDLILKKTTGMNAKQIKSRRNVSNAMDGLTLKEQQTYNAIQNVVIGLLDLKQSYQQIKALLNSMDSSGLLEG
>NZ_CP011013.1|WP_006500528.1|185629_185893_-|DNA-binding-protein
MIEEQLDQKQQQNIMLLVETAVNNGVQRALHPRYEWMNNKQICQWLDISKTTLYKWRKLGLPYSSVEGMSVYNKAQVNEWLLAHGNK
>NZ_CP011013.1|WP_006500527.1|185895_186087_-|helix-turn-helix-domain-containing-protein
MTNAYFNYKQAMEYLGIKSKATFGKYIKQGLPTIKVGRSKRISKTAIDKFMAEHQSSTIKGDK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP011013_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011013_2

182884-183065

Unclear

Consensus_repeat	Method
TATTGCCAATTTTGTCTATACCCCTA	CRISPRCasFinder

3 spacers

Cas14u_CAS-V

The CRISPR arrays of NZ_CP011013_2

>merge|NZ_CP011013|2|182884-183065|CRISPRCasFinder
CTACGCCAATTTTGTCTATACCCCTATTGCCAATTTTGTCTATACCCCTATTGCCAATTTTGTCTATACCCCTATTGCCAATTTTGTCTGTACCTACTAAGGTATTGCCAACTTTGTCTATACCCCTAGTAAAATTTTCTTTACTACCTTGATAGGTATCGCCAATTTTGGCTGTACCTTTT

>NZ_CP011013|2|2|182884-183065|CRISPRCasFinder
CTACGCCAATTTTGTCTATACCCCTA	TTGCCAATTTTGTCTATACCCC
TATTGCCAATTTTGTCTATACCCCTA	TTGCCAATTTTGTCTGTACCTACTAAGG
TATTGCCAACTTTGTCTATACCCCTA	GTAAAATTTTCTTTACTACCTTGATAGG
TATCGCCAATTTTGGCTGTACCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011013.1\|WP_158423321.1\|180653_181106_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273725
NZ_CP011013.1\|WP_080890454.1\|186257_186776_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP011013.1\|WP_006500529.1\|184621_185311_-\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226172
NZ_CP011013.1\|WP_039946001.1\|172346_174440_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP011013.1\|WP_006500532.1\|183791_184115_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_039945996.1\|183444_183780_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_006500528.1\|185629_185893_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP011013.1\|WP_006500527.1\|185895_186087_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP011013.1\|WP_039946002.1\|168305_168953_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP011013.1\|WP_039946003.1\|166994_168275_-\|GTPase-HflX	unknown	unknown	gnl\|CDD\|274455
NZ_CP011013.1\|WP_006500536.1\|178230_179784_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP011013.1\|WP_123835535.1\|189089_189437_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP011013.1\|WP_006500538.1\|176352_177588_+\|transposase	Cas14u_CAS-V	-	gnl\|CDD\|223747
NZ_CP011013.1\|WP_039946000.1\|174739_175663_+\|type-I-pantothenate-kinase	unknown	unknown	gnl\|CDD\|235466
NZ_CP011013.1\|WP_006500524.1\|187605_188754_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP011013.1\|WP_006500542.1\|169857_172161_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226482
NZ_CP011013.1\|WP_039946035.1\|169032_169680_-\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|182775
NZ_CP011013.1\|WP_039945995.1\|184315_184561_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_006500531.1\|184107_184326_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_006500535.1\|181172_181643_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP011013.1\|WP_158423321.1\|180653_181106_-\|hypothetical-protein	gnl\|CDD\|273725	TIGR01637, Putative_autolysin_regulatory_protein_ArpU, phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions].	1.19908e-08
NZ_CP011013.1\|WP_080890454.1\|186257_186776_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.42896e-09
NZ_CP011013.1\|WP_006500529.1\|184621_185311_-\|Rha-family-transcriptional-regulator	gnl\|CDD\|226172	COG3646, COG3646, Uncharacterized phage-encoded protein [Function unknown].	9.13839e-18
NZ_CP011013.1\|WP_039946001.1\|172346_174440_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	1.48115e-144
NZ_CP011013.1\|WP_006500528.1\|185629_185893_-\|DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	4.91893e-07
NZ_CP011013.1\|WP_006500527.1\|185895_186087_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.51569e-08
NZ_CP011013.1\|WP_039946002.1\|168305_168953_-\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.53759e-49
NZ_CP011013.1\|WP_039946003.1\|166994_168275_-\|GTPase-HflX	gnl\|CDD\|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	1.5538e-159
NZ_CP011013.1\|WP_006500536.1\|178230_179784_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP011013.1\|WP_006500538.1\|176352_177588_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.47445e-22
NZ_CP011013.1\|WP_039946000.1\|174739_175663_+\|type-I-pantothenate-kinase	gnl\|CDD\|235466	PRK05439, PRK05439, pantothenate kinase; Provisional.	0
NZ_CP011013.1\|WP_006500524.1\|187605_188754_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.66611e-50
NZ_CP011013.1\|WP_006500542.1\|169857_172161_+\|AAA-family-ATPase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	6.60568e-136
NZ_CP011013.1\|WP_039946035.1\|169032_169680_-\|VTT-domain-containing-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	8.8275e-40
NZ_CP011013.1\|WP_123835535.1\|189089_189437_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	8.45269e-07

>NZ_CP011013.1|WP_006500535.1|181172_181643_-|hypothetical-protein
MQKKIEYPALVEQMHAYLISRGINNVSKLTLFNEMVKDGMINKNGQPTAKALENGLIEAADYNDLNPIQQFKADYPQFSAVPDKFFQVDEQNNVLIGFKGFAWYASRLINDENASIQELNATKQILALYKQRGLTDQSEQQANSLIESIDRLSSAK
>NZ_CP011013.1|WP_158423321.1|180653_181106_-|hypothetical-protein
MNGDESLGVLFEFEPVNEKETNLQVKEFFDKDVQKLQDLANETLQGIMKSPSFDGIGSADHATNKSEEHYIRVVDAKNELEIIAKAINNCPALSKKILNLRFVQGLQQWQIKEQLSLSSNKQYQKYRRKAYCDFADQYSRYGRDLRIMND
>NZ_CP011013.1|WP_006500536.1|178230_179784_+|glutamine-hydrolyzing-GMP-synthase
MANVNLDAFDKILVLDFGSQYNQLITRRIRDFGIYSELLSHKLSAEEIKEMHPKGIIFSGGPNSVYAKDAFKVDPEIYKLGIPILGICYGMQLMSYDLGGKVEPADDSEYGRADIEVIDDDAVMFKGLPKKQYVWMSHGDRVVEAPEGFKVVATSKNCPISAIANDEKKLYGIQFHAEVRNSQYGLDILKKFAFDVCGAKANWSMDDFIDMQVESIRKEVGDKKVILGLSGGVDSSVTAVLIHKAIGDQLTCIFVDHGLLRKNEADEVMNALSRDLGVKIVKVDAADRFLGKLKGVSDPEQKRKIIGKEFVEVFNEEAKKMKDAEYLAQGTLYTDVIESGTDTAQTIKSHHNVGGLPKKLGFKLIEPLRSLFKDETRELGEKLGIPHDLVWRQPFPGPGLGIRVLGEITPEKLEIVRESDAILREEIKKAGLDEEIWQYFTVLPGIRSVGVMGDGRTYDYAVGIRAVTSIDGMTADFAKIPWDVLQKISVRIVNEVDHVNRILYDVTSKPPSTIEWE
>NZ_CP011013.1|WP_006500538.1|176352_177588_+|transposase
MQQAITIKCKLKLQSPLDESALAKSLENYRQACNAVSQYMFNHSFEMAQAKLNRALYHQLRKDYGLKAQMAQSAIRNVVARYRTVKTQLAQKPYRYNTGRQDQYGNDIWENESRTLDWLWYPISFKRPQLDLQRNRDWSLKDNHVMSINTVNGRIKAPFTCQGFDQYLDGTWQFGMAKILHVGSKWYMHISATKELPDYLKEQSQHVVGIDRGLRFLATVYDEQGKTLFFQGQEVMRKRRKFKRLRQQLQSKGTKSAKRRLKKIGQRENRWMTDVNHQLSKTLVNRYGADTLFVLENLVNVRFATEKVAKAKRYEQVSWAFYQLGQFLTYKARLVGSEVVQVSAKYTSQRCPKCGRIWKNNRNHQEHLYVCDRCGYKSNDDRIGAMNIQLLGTQYISGNERPSFSKLITNE
>NZ_CP011013.1|WP_039946000.1|174739_175663_+|type-I-pantothenate-kinase
MDEWLNYDRFDRETWHSFFPYGKTFLTQENLEDIKSLNDQISLADVREVYLPLIKLIQLQYQNYLQMQLQKMTFLRKPMRRIPYIIGIAGSVAVGKSTSARLLQILLKRLMPDKQVELITTDGFIYPNRELEKRGIMARKGFPESYDMEKLLTFLNDVNAGKDYVQAPIYSHSVYDIVPDEYQVIEKPDVLIVEGINVLQLPTTQRIYVSDFFDFAVYIDAEPELIEQWYLERFGMLLDTAFQDPSNYYYPYTKGSRQQAFAMARKVWDMVDLPNLRDYILPTRNRADVILHKAENHHIDRIYLRED
>NZ_CP011013.1|WP_039946001.1|172346_174440_+|LTA-synthase-family-protein
MKTALQKVRRGLNTKLGFFLLTVLLFAIKSYWAYKTKFNLGISDSMQQFLLAFNTLPGALVFLGIALYFRGRLSYWLMILINFLLSTWLFANILYYREFSDFITFNIIKGSGAASNNLGKSLMGIIKPTDFLVYADVIILIVLLAAHFIRIDMRYFKVRYAMTITMIGFVLFGANLAMAEKDRPQLLTRTFDNNYIVKYLGLQAYTIYDGVKTTHNSAVKAKANSNDIKPVLKFLKKNYASPNIEYYGQAKGKNIIIIHLESFQQFMIDYKWKGEEVTPNLNKLYHASDTISFDNFFNQVGQGKTADAELMLENSLYGLPEGSAMVTDGTTNTFQSAPALLEQKLGYTTASFHGDVPSFWNRDNAYKSFGYQYFFSKDYLPKVKDEDMGYGVKDKLFLKESAYYLEQLPQPFYAKLITVSNHYPYIIDKKNTSIKSWNTGDSTVDHYVQTARYLDESVGELLNYLDSTGLRKNTMLVLYGDHYGISNNHKAAIAQILGKKSVDNYDLAMFQKVPFMINMEGLKGGVNHTYGGEIDVLPTIEDLLGISSNKYVQFGQDLLSKNRNQIVPFRNGDWVTNKYTKYNGDYYYTSSGKEIKSPTKAQKAEFAKIQKYVTTDLGLSDKVVNGDLLRFYKLKGFKTVNKKSYSYTLKNGLKQLKQAQKKSKTSLKSQNNNQSTLDQYTTDAPELKGVTLKFPTK
>NZ_CP011013.1|WP_006500542.1|169857_172161_+|AAA-family-ATPase
MTESIQQYEQHHLEQVVKEVRKAEEKASGTIENAKRDVKGLSKQFNDIHMNTTTYSGMMDTAMSVRAQQQMLDERENSWQHAADRLSTLKRLEAKPYFARIDFLEKGAQKPETIYIGLASFSDRPDHFLVYDWRAPISSIYYDGKLGPVTYETPVGKQEVDVRLKRQFQIEDGTIVTLYDTDEAVTDQMLLSALGTHSSTKMKSIVTTIQKTQNEIIRDAKDELLFVQGAAGSGKTAAVLQRVAWLLYRYRGNLTASQVVLFSPNQLFNDYIDQVLPELGEHNMVQMTYFQYVNRRVPRLHVQTLQQRFESSQAAVDQNINRLLTSLSSFKAVGAYARALGQRGLRFRNLMFHGKPFFTKEQIKTIYYSFNRNYNLGNRLDATKDALDHQLRSRVGGAMRSKWAEAAVQSLSKEQMDAMMNNRPREFESDKQEYNFYAKQIVLKEFAPIHRAIRHNMWININAQYLLFLKALPKMVDLQKFDLTEQQWVAFIEKTTQDLKERQISAAGISIYLYLYDLLTGKRGERDIRYVFVDEVQDYDAFQLAYLKFSFPNARFTLLGDLNQAIFTGANSRQLLRQLGTMFDPEKTKVVQLTKSYRSTKQITDFTKHILKDGEKIEAFERQGKRPSIYQLTNLNDAVAQVVAVLKDYQEQHDAVAIIGKTLADSEQIYQLLAEQGVKATLIRTENQRLVDGVLVVPSYLAKGLEFDAVIVWDANDQKYHGDSERQLLYTICSRAMHDLTIVSVGQASQLFADVPSQEYELTDRLS
>NZ_CP011013.1|WP_039946035.1|169032_169680_-|VTT-domain-containing-protein
MAKLLYALTHIPQVILPLFNSLGNWTYVILFSLIFMETGLVVFPWLPGQSLIFVTSSFAALHGAEVKMSILVPGFFIAAVLGDTLNYLIGTRLIKWSWLKRRLAGPTMEKAQLFFSRYGLRAIIFGRFVPLIRTFVPLISGIAKYRFGRFMLGNVLGVAIWVVSGALAGYYLGSIPFVQAHFSTLLLGLVICGSLPAVFFNLIKRIRRHIIERNL
>NZ_CP011013.1|WP_039946002.1|168305_168953_-|histidine-phosphatase-family-protein
MAVNVYFVRHGQTYLNLFHKYQGWSDAPLTEKGIEDGKRVGKALAKIDFDYLFCSDMRRTVKTAELLAASHPTKIVHPESDPAFREVFFGFFEGEDTAAASMNIGLCRSYDELVSKYSVEKARDITKAADPFHLAENDAEFWQRMDKGLDRLRNLPDGSTAVVVSHGAAIRSIVSRYAKDKALANDAPVNGSITKLSLTPDQTEIVFYNQLSLPE
>NZ_CP011013.1|WP_039946003.1|166994_168275_-|GTPase-HflX
MDTNIQSAEPVIIIGLNMDQEDYEYSMEELAALAEANQMEVIDRLDQALDRPNPATYFGSGKVEELRHLAEAEEVATVIANDELTPSQLQNLADQTGVRILDRTALILEIFAKRAQSREAKIQVEIAQLQYQLPRLQTAANQRLDQQTGGGSGFTNRGAGETKLEMNRRTINHKISHLRAELKEIAKSEDVKRAKREKSDTPTAALVGYTNAGKSTIMNQLVSRFGVSEEKQVFEKNMLFATLDTSVRQLTLPDQKRFLLSDTVGFVSKLPTHLIEAFKSTLAEAASADLLIQVIDYSDPNYEAMMRTTEKTLKQIGIENIPMLYVFNKADQTEFEYPVMEGDNRIIISAKDDESIQLLVQALRRHLFKDYVLTELLIPFADGRTVSYVNENCNILETEYLNNGTRLKVEMSPQDFARFERYVIKN
>NZ_CP011013.1|WP_039945996.1|183444_183780_-|hypothetical-protein
MSQYQNKRMTKDERRLIEFLPKGSERPRPLKELSKLLYGDAESNNTRKTRRIINSLVINYEIPVGSKHNRPNGYFLITNEAERQTALKTLDAQSADLINRAAHLQKASFWR
>NZ_CP011013.1|WP_006500532.1|183791_184115_-|hypothetical-protein
MNDLTVITIEHPESGRKALLLTESGENSLIENGITGARIEQKAIEDKTALFINTPDDKTALLIGDETLLNDLEAFKSANTKKIHLALDGLSGQLKAAVQRLIDIYLN
>NZ_CP011013.1|WP_006500531.1|184107_184326_-|hypothetical-protein
MSDKTDFWAEYFKQPSPDKETIEFNKQLDKGIQEMFDDSELLDKETIEFDQWLEKEIQKKLFNTESEDNEHE
>NZ_CP011013.1|WP_039945995.1|184315_184561_-|hypothetical-protein
MQKISFKLLDLLETNISDIDNASKILSDYFEELTDTEPDLLKAKLADVSPLIDLMLKTIYNAVDAANDKLRVIDEAQSNER
>NZ_CP011013.1|WP_006500529.1|184621_185311_-|Rha-family-transcriptional-regulator
MDTEKIIKAAGNAELAKNFNDLVFLGNVTEEPYTTDEIVAAYSGYDLHSVKDLIRRHEKRLKKFGRLNAYDTRKIGRGRPVKTYRLNEPQATALITYLGNTKRVLDFKDNLVAAFFKIRNEKLEQIKNRARSIPERRTLTDAIQNWPNCNQWTYKTITDLILKKTTGMNAKQIKSRRNVSNAMDGLTLKEQQTYNAIQNVVIGLLDLKQSYQQIKALLNSMDSSGLLEG
>NZ_CP011013.1|WP_006500528.1|185629_185893_-|DNA-binding-protein
MIEEQLDQKQQQNIMLLVETAVNNGVQRALHPRYEWMNNKQICQWLDISKTTLYKWRKLGLPYSSVEGMSVYNKAQVNEWLLAHGNK
>NZ_CP011013.1|WP_006500527.1|185895_186087_-|helix-turn-helix-domain-containing-protein
MTNAYFNYKQAMEYLGIKSKATFGKYIKQGLPTIKVGRSKRISKTAIDKFMAEHQSSTIKGDK
>NZ_CP011013.1|WP_080890454.1|186257_186776_+|helix-turn-helix-domain-containing-protein
MSYNVELGDRIKKIRLSLGKTQEEFGRMFDPPAPKSAVSRWEHGGSPNKKRLKAIADLGNVSISYLLGTDKVVKSALDTVNDISSSQYSRLTKILFETISNEKKKKLEELQSKISDPQEFDNFVFTVTELLTIFLYAKSNSNAKMAEKYKSIQNSIDELGSELPEFQLPSIF
>NZ_CP011013.1|WP_006500524.1|187605_188754_+|site-specific-integrase
MNKIPIYEYETKHGTKYGFRFYGGQDTNKDYSKTIQKRGFKDFDSALSAYMDTKKAFENGQSKPRPKRYTYKDIYKLWLKQHKQDIKLSTACTIENLFNKHILPSFGNRYITKITPLVCQAAVNQWSKDCKGTYKSIANRANAVFDYAYRLELIKDNPMKKVMIPRNKKNDKRENYYNKQELNEFLEYCKSDLTYKYFAVFRVLAYSGMRKGELRGLLWSDIDFEKNTISINKTVSYNEKWQPIVQSTKTKKSTRIITMDVKTMLILRKWQVMQQKKLLMLGYNSLSSKQLVFQGNGNKFLSRDMINKMLILVQEKHGLKKITVHGLRHTHCSLLLAAGVPVNDVKDRLGHANIQTTLDIYAHVSDQQRKDTADKFSQYMQA
>NZ_CP011013.1|WP_123835535.1|189089_189437_-|helix-turn-helix-transcriptional-regulator
MTQTALARRAGMSRAVIANIIAGRIPTFETAVVLSRIMNLSLDEITAGNIADVPDPKQFKKMFKTDAVKEIEKLLSKSNWYGNEFKELSEKQKQTILRLIRAYLNLTKSGNIRKK

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Crispr_ID: NZ_CP011013_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011013_3

1305291-1306112

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
AGGATCACCCCCACATACATGGGGAATAC	CRISPRCasFinder
AGGATCACCCCCACATACATGGGGAATAC	CRT
GGATCACCCCCACATACATGGGGAATAC	PILER-CR

13 spacers

DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP011013_3

>merge|NZ_CP011013|3|1305291-1306112|CRISPRCasFinder,CRT,PILER-CR
AGGATCACCCCCACATACATGGGGAATACAACAACAAAAACGAAACTGACGCCAATGCTACAGGATCACCCCCACATACATGGGGAATACGCCATTGCTTTCACCCACAATCAGTGTGAACAGGGATCACCCCCACATACATGGGGAATACTGCGGGCGGTGTTAATGGCTTTGCTTTTTACCAGGATCACCCCCACATACATGGGGAATACTCATAAGATGTTTCCGTATCACCGCCGGTAAAAGGATCACCCCCACATACATGGGGAATACAAAAATACATCGTCCCAGTAGTCCGCGCCTTCAGGATCACCCCCACATACATGGGGAATACGTCGTCAACAATTTCTTTCTTGTGCTCCTGGAAGGATCACCCCCACATACATGGGGAATACACACTTTAACGCTACATTAGAGTTAGACAAAGAGGATCACCCCCACATACATGGGGAATACCCTTGGATCGGTCTTGCCAATTGCCATGCCGAAGGATCACCCCCACATACATGGGGAATACTATCGTTCAATTTCAACGCTTGGGGAGGACTTAGGATCACCCCCACATACATGGGGAATACACCTTCAGCGATTTGCTGTTGTGATACACCATAGGATCACCCCCACATACATGGGGAATACCCGTCTATGTATGACGAAAAGCTGGCTATTTTAGGATCACCCCCACATACATGGGGAATACCGGCAACATGATCATCAATAGCCAGATATGGAAGGATCACCCCCACATACATGGGGAATACCGAACACCGATCAGGTTTCGCCAGCGCCAAAAGGGATCACCCCCACATACATGGGGAATAC

>NZ_CP011013|3|3|1305291-1306112|CRISPRCasFinder
AGGATCACCCCCACATACATGGGGAATAC	AACAACAAAAACGAAACTGACGCCAATGCTAC
AGGATCACCCCCACATACATGGGGAATAC	GCCATTGCTTTCACCCACAATCAGTGTGAACA
GGGATCACCCCCACATACATGGGGAATAC	TGCGGGCGGTGTTAATGGCTTTGCTTTTTACC
AGGATCACCCCCACATACATGGGGAATAC	TCATAAGATGTTTCCGTATCACCGCCGGTAAA
AGGATCACCCCCACATACATGGGGAATAC	AAAAATACATCGTCCCAGTAGTCCGCGCCTTC
AGGATCACCCCCACATACATGGGGAATAC	GTCGTCAACAATTTCTTTCTTGTGCTCCTGGA
AGGATCACCCCCACATACATGGGGAATAC	ACACTTTAACGCTACATTAGAGTTAGACAAAG
AGGATCACCCCCACATACATGGGGAATAC	CCTTGGATCGGTCTTGCCAATTGCCATGCCGA
AGGATCACCCCCACATACATGGGGAATAC	TATCGTTCAATTTCAACGCTTGGGGAGGACTT
AGGATCACCCCCACATACATGGGGAATAC	ACCTTCAGCGATTTGCTGTTGTGATACACCAT
AGGATCACCCCCACATACATGGGGAATAC	CCGTCTATGTATGACGAAAAGCTGGCTATTTT
AGGATCACCCCCACATACATGGGGAATAC	CGGCAACATGATCATCAATAGCCAGATATGGA
AGGATCACCCCCACATACATGGGGAATAC	CGAACACCGATCAGGTTTCGCCAGCGCCAAAA
GGGATCACCCCCACATACATGGGGAATAC

>NZ_CP011013|3|1|1305291-1306112|CRT
AGGATCACCCCCACATACATGGGGAATAC	AACAACAAAAACGAAACTGACGCCAATGCTAC
AGGATCACCCCCACATACATGGGGAATAC	GCCATTGCTTTCACCCACAATCAGTGTGAACA
GGGATCACCCCCACATACATGGGGAATAC	TGCGGGCGGTGTTAATGGCTTTGCTTTTTACC
AGGATCACCCCCACATACATGGGGAATAC	TCATAAGATGTTTCCGTATCACCGCCGGTAAA
AGGATCACCCCCACATACATGGGGAATAC	AAAAATACATCGTCCCAGTAGTCCGCGCCTTC
AGGATCACCCCCACATACATGGGGAATAC	GTCGTCAACAATTTCTTTCTTGTGCTCCTGGA
AGGATCACCCCCACATACATGGGGAATAC	ACACTTTAACGCTACATTAGAGTTAGACAAAG
AGGATCACCCCCACATACATGGGGAATAC	CCTTGGATCGGTCTTGCCAATTGCCATGCCGA
AGGATCACCCCCACATACATGGGGAATAC	TATCGTTCAATTTCAACGCTTGGGGAGGACTT
AGGATCACCCCCACATACATGGGGAATAC	ACCTTCAGCGATTTGCTGTTGTGATACACCAT
AGGATCACCCCCACATACATGGGGAATAC	CCGTCTATGTATGACGAAAAGCTGGCTATTTT
AGGATCACCCCCACATACATGGGGAATAC	CGGCAACATGATCATCAATAGCCAGATATGGA
AGGATCACCCCCACATACATGGGGAATAC	CGAACACCGATCAGGTTTCGCCAGCGCCAAAA
GGGATCACCCCCACATACATGGGGAATAC

>NZ_CP011013|3|1|1305292-1306112|PILER-CR
GGATCACCCCCACATACATGGGGAATAC	AACAACAAAAACGAAACTGACGCCAATGCTACA
GGATCACCCCCACATACATGGGGAATAC	GCCATTGCTTTCACCCACAATCAGTGTGAACAG
GGATCACCCCCACATACATGGGGAATAC	TGCGGGCGGTGTTAATGGCTTTGCTTTTTACCA
GGATCACCCCCACATACATGGGGAATAC	TCATAAGATGTTTCCGTATCACCGCCGGTAAAA
GGATCACCCCCACATACATGGGGAATAC	AAAAATACATCGTCCCAGTAGTCCGCGCCTTCA
GGATCACCCCCACATACATGGGGAATAC	GTCGTCAACAATTTCTTTCTTGTGCTCCTGGAA
GGATCACCCCCACATACATGGGGAATAC	ACACTTTAACGCTACATTAGAGTTAGACAAAGA
GGATCACCCCCACATACATGGGGAATAC	CCTTGGATCGGTCTTGCCAATTGCCATGCCGAA
GGATCACCCCCACATACATGGGGAATAC	TATCGTTCAATTTCAACGCTTGGGGAGGACTTA
GGATCACCCCCACATACATGGGGAATAC	ACCTTCAGCGATTTGCTGTTGTGATACACCATA
GGATCACCCCCACATACATGGGGAATAC	CCGTCTATGTATGACGAAAAGCTGGCTATTTTA
GGATCACCCCCACATACATGGGGAATAC	CGGCAACATGATCATCAATAGCCAGATATGGAA
GGATCACCCCCACATACATGGGGAATAC	CGAACACCGATCAGGTTTCGCCAGCGCCAAAAG
GGATCACCCCCACATACATGGGGAATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011013.1\|WP_045025352.1\|1304947_1305160_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_052669276.1\|1303118_1303844_+\|DUF4355-domain-containing-protein	unknown	unknown	gnl\|CDD\|372987
NZ_CP011013.1\|WP_039945386.1\|1299309_1299546_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_039945388.1\|1300599_1300884_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181649
NZ_CP011013.1\|WP_006500519.1\|1303934_1304858_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP011013.1\|WP_006499535.1\|1298970_1299210_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_045025353.1\|1317391_1318240_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_039945599.1\|1309342_1310425_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP011013.1\|WP_039945600.1\|1308654_1309362_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP011013.1\|WP_148313142.1\|1301277_1302228_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP011013.1\|WP_006500370.1\|1302152_1302845_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233
NZ_CP011013.1\|WP_045025525.1\|1300901_1301276_+\|YjcQ-family-protein	unknown	unknown	gnl\|CDD\|286689
NZ_CP011013.1\|WP_039945595.1\|1311052_1312753_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP011013.1\|WP_006499677.1\|1307040_1307982_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP011013.1\|WP_006499678.1\|1306141_1307044_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_CP011013.1\|WP_148313164.1\|1315934_1316636_+\|potassium-channel-family-protein	unknown	unknown	gnl\|CDD\|369572
NZ_CP011013.1\|WP_006499536.1\|1299853_1300618_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_039945597.1\|1310451_1311045_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP011013.1\|WP_039945594.1\|1312745_1315478_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP011013.1\|WP_080890484.1\|1307995_1308670_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050

Protein	Function_ID	Function_description	E-value
NZ_CP011013.1\|WP_052669276.1\|1303118_1303844_+\|DUF4355-domain-containing-protein	gnl\|CDD\|372987	pfam14265, DUF4355, Domain of unknown function (DUF4355). This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 180 and 214 amino acids in length.	5.70455e-19
NZ_CP011013.1\|WP_039945388.1\|1300599_1300884_+\|hypothetical-protein	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0.00713484
NZ_CP011013.1\|WP_006500519.1\|1303934_1304858_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.69151e-78
NZ_CP011013.1\|WP_006500370.1\|1302152_1302845_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	0.000926802
NZ_CP011013.1\|WP_039945599.1\|1309342_1310425_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	9.66119e-153
NZ_CP011013.1\|WP_039945600.1\|1308654_1309362_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.56432e-45
NZ_CP011013.1\|WP_148313142.1\|1301277_1302228_-\|IS3-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.39225e-24
NZ_CP011013.1\|WP_006499677.1\|1307040_1307982_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.73526e-127
NZ_CP011013.1\|WP_045025525.1\|1300901_1301276_+\|YjcQ-family-protein	gnl\|CDD\|286689	pfam09639, YjcQ, YjcQ protein. YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is expressed in bacteria and also in viruses. It appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown. However, it is thought to be a prophage head protein in viruses.	8.64657e-28
NZ_CP011013.1\|WP_039945595.1\|1311052_1312753_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	9.85015e-77
NZ_CP011013.1\|WP_080890484.1\|1307995_1308670_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	3.73542e-72
NZ_CP011013.1\|WP_006499678.1\|1306141_1307044_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	2.3215e-41
NZ_CP011013.1\|WP_148313164.1\|1315934_1316636_+\|potassium-channel-family-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	9.13864e-14
NZ_CP011013.1\|WP_039945597.1\|1310451_1311045_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	2.85778e-23
NZ_CP011013.1\|WP_039945594.1\|1312745_1315478_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.85854e-78

>NZ_CP011013.1|WP_045025352.1|1304947_1305160_-|hypothetical-protein
MWLSKNGALSLANSVIRSIANELNVPAGIAESDGVYYYVWQAPNGSQLYYEVKEETIKLVAKNMNQKGRL
>NZ_CP011013.1|WP_006500519.1|1303934_1304858_-|IS30-family-transposase
MGTTILSFQNRVVIETLHNEGRSLRYIANYLGFSKTTIFNELHRLNGEYQAELAQSDCERKVSQRGRKSSLTKNLKHLIEEKIQVQKWSPEQVAHVVGIAYKTVYNWIDQKWLDVQLSDLPDHGIRRHRTKEKRGTFSHGRSIEERPHKIETRQEFGHFEADTVLSGKRKGQAVATFVERKSRLTIVKRLHGRDSQSMTQAVLELASQLQDKLKTLTVDHGKEFANYQAIEQRTGTPVYFAHAYSPHERGSNENRNRVLRRFIPKGQAIEELSDRQLVQINWYLNSRPLKCLNWRTPIEIFLLNLRH
>NZ_CP011013.1|WP_052669276.1|1303118_1303844_+|DUF4355-domain-containing-protein
MYKKLVQSGLVKTHSLPMMLQFFAEQGSEGSEGAPNTESEQPNESEEKQGEQQAKTFTQDEVNKIVSQRLERQKEQLKAKEDEAKKLSRMNAEQKANYELEKANKRAEEAAAKLARYEMRDSAKQMLADGGFNNADNSLLDLVVTDTAESTQANVNVLLNAIEAIREDERNKLGSPPHAWGNTPLKLWMNWNKEDHPHIHGEYFSSSLNKIYYTLFYMKAISFLSNLLKKNQSSSSQLDSS
>NZ_CP011013.1|WP_006500370.1|1302152_1302845_-|helix-turn-helix-domain-containing-protein
MNRLELLYGYQKTESGLKVYADMHHVNQNTMTRWIRQFLLHGLAGVRHRSFNHRYSLNTKIEAVKEYQAGFPGEKIIEKYDIRSLSQLKQWSIQYNNDELKTKSRKRVRKMGRKVNFEEKCKIVQWVLDHDNDYQGATIQFNVSYQRVYSWVRKYHEAADSWEALKDNRGHRKPQKALEEMTEKERLEAEIKRLKKINREMELEIAFAKKLVEIRNRGVKRPDDIKRFKN
>NZ_CP011013.1|WP_148313142.1|1301277_1302228_-|IS3-family-transposase
MRKKISRNTQSGGEATGRYQAVQELINETAGSVSELTKIAKVSRKSYYQWLKRKPTQREIENKAILEAIYQIEKRHQNCAGHKKVTAILNNENGKNQEIPEYTFSFDFRINIKRVRRIMRKHGIKADVRQKKRSREKEQQQYQEDNLLERKFIQIAPNLVWVSDTTELTYGRNNKVRLHVVLDLYGRYALSYHISPTETAEAAIEAFKRAAKQAGTFAPMIHTDRGAAYTSKDFNNYLISNNSKHSLSAPGTPADNAVIEHYWGDFKYIWMAHHSHPQTLAELKALVKQGVEYFNTVEISSKRNNLTAEDFRNEAV
>NZ_CP011013.1|WP_045025525.1|1300901_1301276_+|YjcQ-family-protein
MSNNDFFTVAYKILSYLKFCYENGQTPDPNVLNADTFNVSKVQFGNTLEMLADHGYISGIQFHNTKMGKTYSSLLNLKITIEGLQYLAENSIMKKAYRIFKEVKDWLPLMVLYPVKVTLKKIKN
>NZ_CP011013.1|WP_039945388.1|1300599_1300884_+|hypothetical-protein
MAKYKIASIDYEFCFSSEVIQDDYSQEEYSKMNDFIDKWTYMPSDKDDRFETNVNLKDGYDYIDNIEELVPKELTDNDKKRLRKKIRESLVTVD
>NZ_CP011013.1|WP_006499536.1|1299853_1300618_+|hypothetical-protein
MPKIPDDTHPNCRCSISETWVEGKDDNLVGGKRSKALEKAVGVAIADKIIKKPRITRDVNVIQKRYDDAVNQYQEETGIDVITLMHEGNFVDTSKPYDDEKAHFIKWLMRQNGYNEIPKPVKKYSGKLVYRGVNDSDDKEASEYINDLKTKPFCISGADSSSAGRGIYVTEWKGDLKKYKNGIISEWAISDIANVLWLSDCKEIAKDMHNFTFSNRLMDTNADIIGILGGYDIIKKGTKYNVLNGGVLEWLNTK
>NZ_CP011013.1|WP_039945386.1|1299309_1299546_-|hypothetical-protein
MIAILKVIDQFKVAGKYAIIVQGASFIKWGSYLVDKDNHKVKVLSSNFPSVKAHKKKILMLQVDGVVSGDELEIEPEQ
>NZ_CP011013.1|WP_006499535.1|1298970_1299210_-|hypothetical-protein
MKTTQAQRRATDTYRKKNPEKIRYQNTLGSARSFINPKTEKMKNNIKVATEDGHFNYLDDLKSLRELIDNRIKELEVNK
>NZ_CP011013.1|WP_006499678.1|1306141_1307044_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVITLSKVPMSLRGDLTKWCREVQTGVYVGNFSARIRDLLWERITKSIGNGEATLIYSTNNELGYTFRTTRKDKQVINFDGLPFIKHLKNSPGSVKHGFSKAAKLHRAKKIQESKLSKANSTSTRQSITELVAIDLETTGLKPTNSEIISISAVKRTNEQQVEKFNRYIKIKSEVPATIQKLTGLSNDFLNSEGESLEKVLEEFQVFIGNNVLVGYNLLFDQSFLNAAFIKANKQIISNRMIDLMPIIKKDQKFLDNYRLATVLKNYGIENEHPHKSISDAMATLDLALKLIKNDKLRI
>NZ_CP011013.1|WP_006499677.1|1307040_1307982_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MKKIGADKPKLQELGRIDDRISFLYLEHAVVNRQDSAIKVEDSTGIIYIPVAIIGVLLLGPGVDVTHRAMELIGDSGAAVLWVGEHGVRQYAHGRALGHSSKLLELQAKLVSNTRTRIAVARKMYQKRFPTEDVSQLTMQELRGKEGSRIRRVYREWSKKTGVEWTRREYNHDNFESSTPINKALTEAHQALYGLCYSVVAALGASPGLGFIHTGHDLAFIYDFADLYKAEFSIPTAFEVVAAYGDDNIADRTRWAMRDKIRDSKLIVKMVADLKDLLGDDDTRNADIINLWDDKEGLQKFGVQYHEFGDDDS
>NZ_CP011013.1|WP_080890484.1|1307995_1308670_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MGIDLDWREIAMVYLSRVEIDTKNRRKIKDLTNLGAYHNWIEQSFPDEIQKGIRKRHLWRIDTLANRKYLLVVSEDKPDLTILSRYGIANTTATKEYSPFINSIKKGQQLRFRLVANPVLRKGAGKNGERERTFPHITINQQKEWLIKRSERAGFKLSENSFEIKERDFVPLYHKGNRPIRLSRVAFEGILEVIDPIALQNTLIYGLGREKAYGMGMLTVIPIN
>NZ_CP011013.1|WP_039945600.1|1308654_1309362_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLVIRIAAPLQSYGDPASFEKRTTFRAPSKSAVIGMIGAALGFRRESDDYKSLNDLDFAVRVDQPGEVLSDFQITHYSLKKPGKLSHRIYLQDAVFMVALSSKQDALMEKIEYALRHPKFQLYFGRRSNPPAGILKMKMCPDKTAINVLKELPWQASVWFQRKYKKDVFNARIYADAKLVPDRPNRLIKDAVGSFNQKSRYYEYRSVAEDNVFLENSNYVQRKNTDHDIWASI
>NZ_CP011013.1|WP_039945599.1|1309342_1310425_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTKNLYVDIHVLQTVPASNINRDDSGAPKTALYGGVTRARVSSQSWKHAMREAFKKDSDGAEWLLSHRTKKGIQLLAAKLAEKDNTLDLDAATKKAIEVFKAAGIKVKKDENTTGALFLLSDGQIDKLADYALQNDSYDKKELKEVFSDKNSLDLALFGRMVADNPELNVDAASQVAHAISTHEIVPEFDYFTALDDEQDSAGAAMIDTLEFNSSTLYRYANVNVKELFHNLGSAELTLKGIELFIKKFVLSMPTGKQNSFANKTIPPYVMVTIRNDTPVNLVSAFEEPVRSNNGYIKKSIEKLENEYDVTQSFVEKPQTTVVLSTKESKIDNQVKDISSLLTNVAECLERMMNDENISD
>NZ_CP011013.1|WP_039945597.1|1310451_1311045_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MANEIAKVTAQIIYSLYNNGNLDKAVLASLRHAVTIKDHRAENVWPIMFSKMAASDISNDPQGRETRQETAIYTALRCFAIYQQGLTQLSYASSNQVSTEDKGQQLFVALADLRKNQDKQAALDRRIQNLLSATNIDSVAKSVTQLVRILKSADRNLLLDFPQLAQDLFFFQMGYEYSRKVFLKWGRQYYWQSVSTN
>NZ_CP011013.1|WP_039945595.1|1311052_1312753_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MAEESFNLLTSPWIKVIGLDSDEEKQISLEDLFQNAQNYRRLAGEMRSQDLAILRFLLAILTTVYTRFDANGNPYEWLELDSKSWRPIENSLDDDTDDIQEDLLATWEDLFQRGSFSDIVVKYLEKYAARFDVFGKQPFYQVTAEIYDDLTSKKIASGKGTVAIKQMNRLISESNNSPDIFSPKSSSQKNKIGTAEFVRWLISYQNFTGTTDKTKIKGVEKYSASAGWLYGLDTVYAQGKTLFETLMLNLVLISDFSGEYGNIIQKPNWEFASQADYVKYLLEKKAPDNIAGLYTNWSRMIYVRWDEEPTVFSTCLPKFDDDAINNEIEPMTTWRVKDRHHNTKHLSDLGKKMWRNFGLYVPTEADTQNADMKPGIVNWLSLLKDEQLIPDAHYVNLATANLISDGNATSQLPAAEISDDLYINADILFDLHWTTKIENAIEYTQQIIKYYWGFANGLAELRGIGDKRDFANRLSEDFYNRLNEPFNNWLIDLDPMQPTTPQILKWEDEVLLRQVDEQVNAVMATASPKEIIGKHEDKNNEKMIKNIFILVNILRASINKYRKKLR
>NZ_CP011013.1|WP_039945594.1|1312745_1315478_-|CRISPR-associated-helicase/endonuclease-Cas3
MGELTTEELSLWGEKAIRDDQELWLPLVIHLIDAKNVINWLYNHWLTDNQRSLLMIENSETLTQNVVKFLGYIHDIGKATTAFQTKQSYAHNDSLDEDIMEKMIRGGFKGIDKLSFLKRSASPHALAGEALLEVYGVNKSIAAIIGGHHGKPLSNPVAKDTQYNSENYWPETPGEEQNRWKKVQEDLFQYGLHLCGFHTSSEIPWVNKIQAVLLEGLLIMADWLASSEYLNDDPSKPLFPLIDINESAADVNTEQRYQNAINTWQITDEWSAEHVSDIDEYYVRHWGFHPREVQLAMCQEISKALDPGIMIVEAPMGIGKTEIALTVAEQLASRCGCNGLFMGLPTQATSNAMFDRVEDWLAKEAKEQDANLSIKLMHGKAKFNQRNQAIPRAENVQGSGAVVVNDWFTGKKSILEEFTVGTIDNLLQMGLKQRHLFLKHLGLSGKVVVIDEVHGYDVYMSSYLAKVLQWLGAYNVPVIALSATLPKEKRNELLKSYAKGKFGSDQLEAEPGWENNEAYPLLSMLDGKRLRQVTNFVPQKSKYVQVKRINVENDKLVDIVNAKIKDGGVAGIIVNTVKRAQEIADLMPKDVLTIVLHSAFLAPDRQKIEEKLQSMIGKNAARPPRLVVIGTQVLEQSLDIDLDVLFTDIAPMDLILQRVGRLHRHNIKRPKGLQTPQLYILGINDYGDYGKSNEYIYEKYLLMKTDHFLKDKIALPDDISKLVQQVYDTATDSEVSGLKEARAKFDKDQKNSKNKAKVFQIAEPKQHKRRGTIHKWLDWDLPDDRQGEIKAQAAVRDIQETLEVILLKEIDHQFYLLDGRKLAEVDDKTISDQVIRLPSVVTPEWKLDEIIKKLEDVTFKNLPQWQQSIWLHDSLALILGSKQTTDFFDFRLSYSSDKGLCYERLEEKHG
>NZ_CP011013.1|WP_148313164.1|1315934_1316636_+|potassium-channel-family-protein
MALIALISILLLLFDCAHAINLSQSPYVWIDRGIWAILVVDYFARLAIAKDKIKFFKENIWDLLSIIPTNSIFTLFRFVRVARVFHMLRVLRLLRLVGLTVRLKRFFHTDGLIYYLYLSCGILFIAAGMYSISEGVSFSTAFWWALTTVSTVGYGDVSPTTLWGRIAAVLLMVVGVSIIGLLTSTITTYFEPTNPHEVTKKEIAKLHAENRQLHQELLEIKQMLKEQQHHDVK
>NZ_CP011013.1|WP_045025353.1|1317391_1318240_-|hypothetical-protein
MTSLLMMSDGWGLFCLLVLGLFLMLAVGFLWGDFCRRMRRHRLDVLSQRHPISWQILPLDSPEALRGLRIFNGFHKTLEAASEHLANNNRDAAKGIMDQYMTPLESKAFLRECEQRVYESRRELDMQLDLVRCREVKLEGQRTIFELTTRQNGHEQRPDGKPAAVSYERVDTFIWDETHEKMLRIWRGGATGQELEIWISQFVYPYGKYWQRMRNAALAVAVLLIVAAFVVGICFGSWPIKSWEPIIWACIMLYVGLGLLFSPLINSDRDVAAEEYVRYFNR

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Crispr_ID: NZ_CP011013_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011013_4

1460182-1460299

Orphan

Consensus_repeat	Method
CTTACTCTCCCAAGGGTTTTGGCGAAAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP011013_4

>merge|NZ_CP011013|4|1460182-1460299|CRISPRCasFinder
CTTACTCTCCCAAGGGTTTTGGCGAAAACCCTCACCAAAACAATACACTACCTCACCAAACCTCACCGCGCCGGTAATGTACCTAGCGCTTACTCTCCCATGGGTTTTGGCGAAAACC

>NZ_CP011013|4|4|1460182-1460299|CRISPRCasFinder
CTTACTCTCCCAAGGGTTTTGGCGAAAACC	CTCACCAAAACAATACACTACCTCACCAAACCTCACCGCGCCGGTAATGTACCTAGCG
CTTACTCTCCCATGGGTTTTGGCGAAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011013.1\|WP_045025427.1\|1465898_1466879_-\|DNA/RNA-non-specific-endonuclease	unknown	unknown	gnl\|CDD\|372824
NZ_CP011013.1\|WP_045025426.1\|1464138_1465278_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP011013.1\|WP_045025423.1\|1462132_1463263_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP011013.1\|WP_052669296.1\|1456383_1456869_-\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP011013.1\|WP_034540901.1\|1449579_1451001_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545
NZ_CP011013.1\|WP_045025556.1\|1448561_1449446_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|225543
NZ_CP011013.1\|WP_045025422.1\|1459008_1459341_-\|plasmid-mobilization-relaxosome-protein-MobC	unknown	unknown	gnl\|CDD\|368576
NZ_CP011013.1\|WP_045025421.1\|1457449_1459027_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP011013.1\|WP_158423332.1\|1460902_1461973_-\|DNA-primase	unknown	unknown	gnl\|CDD\|225913
NZ_CP011013.1\|WP_045025424.1\|1463290_1463650_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_045025419.1\|1454603_1455425_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP011013.1\|WP_045025425.1\|1463743_1463929_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP011013.1\|WP_158423331.1\|1456872_1457049_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_045025428.1\|1467036_1467885_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381364
NZ_CP011013.1\|WP_045025420.1\|1457153_1457453_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_080890491.1\|1459355_1459925_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131440
NZ_CP011013.1\|WP_045025430.1\|1469374_1470199_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614
NZ_CP011013.1\|WP_033934762.1\|1465633_1465837_+\|YjzD-family-protein	unknown	unknown	gnl\|CDD\|371396
NZ_CP011013.1\|WP_045025429.1\|1468035_1469286_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
NZ_CP011013.1\|WP_045025418.1\|1451159_1454486_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660

Protein	Function_ID	Function_description	E-value
NZ_CP011013.1\|WP_045025427.1\|1465898_1466879_-\|DNA/RNA-non-specific-endonuclease	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	1.02959e-53
NZ_CP011013.1\|WP_045025426.1\|1464138_1465278_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.32847e-34
NZ_CP011013.1\|WP_052669296.1\|1456383_1456869_-\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	0.000524481
NZ_CP011013.1\|WP_045025425.1\|1463743_1463929_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	5.23585e-08
NZ_CP011013.1\|WP_045025556.1\|1448561_1449446_-\|DNA-binding-protein	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.14969e-102
NZ_CP011013.1\|WP_045025422.1\|1459008_1459341_-\|plasmid-mobilization-relaxosome-protein-MobC	gnl\|CDD\|368576	pfam05713, MobC, Bacterial mobilisation protein (MobC). This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localized DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA.	2.57086e-05
NZ_CP011013.1\|WP_045025421.1\|1457449_1459027_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	3.65673e-34
NZ_CP011013.1\|WP_158423332.1\|1460902_1461973_-\|DNA-primase	gnl\|CDD\|225913	COG3378, COG3378, Phage associated DNA primase [General function prediction only].	7.67787e-41
NZ_CP011013.1\|WP_045025428.1\|1467036_1467885_-\|aldo/keto-reductase	gnl\|CDD\|381364	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins. Escherichia coli YeaE is the prototype of this family. It acts as an aldo-keto reductase (AKR) that catalyzes the reversible reduction of ketones to the respective alcohols using NAD(P)H as a hydride donor.	5.08794e-141
NZ_CP011013.1\|WP_045025419.1\|1454603_1455425_-\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	1.08483e-55
NZ_CP011013.1\|WP_034540901.1\|1449579_1451001_-\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	0
NZ_CP011013.1\|WP_045025423.1\|1462132_1463263_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	5.13295e-57
NZ_CP011013.1\|WP_045025429.1\|1468035_1469286_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
NZ_CP011013.1\|WP_080890491.1\|1459355_1459925_-\|hypothetical-protein	gnl\|CDD\|131440	TIGR02387, DNA-directed_RNA_polymerase_subunit_gamma, DNA-directed RNA polymerase, gamma subunit. The RNA polymerase gamma subunit, encoded by the rpoC1 gene, is found in cyanobacteria and corresponds to the N-terminal region the beta' subunit, encoded by rpoC, in other bacteria. The equivalent subunit in plastids and chloroplasts is designated beta', while the product of the rpoC2 gene is designated beta''.	0.00872341
NZ_CP011013.1\|WP_045025430.1\|1469374_1470199_-\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	5.66528e-93
NZ_CP011013.1\|WP_033934762.1\|1465633_1465837_+\|YjzD-family-protein	gnl\|CDD\|371396	pfam11151, DUF2929, Protein of unknown function (DUF2929). This family of proteins with unknown function appears to be restricted to Firmicutes.	6.87094e-11
NZ_CP011013.1\|WP_045025418.1\|1451159_1454486_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0

>NZ_CP011013.1|WP_080890491.1|1459355_1459925_-|hypothetical-protein
MYREIIIKDEKGNIKRHTYEHLLTEKQWLKKQRQLRKNATGELISWSNHYGGGQALYFEEAETKVMSKTERMRREKAKKKAKLEEEKKRQLELEYENARTSYQWLHDCHRKIINSDNGFHVEKYRYDNDNSADDPFYLAEMPYFYYLERDTKPVDEAEYERLKQLYIKKYGGWEHIDLDNTKYNGKPWY
>NZ_CP011013.1|WP_045025422.1|1459008_1459341_-|plasmid-mobilization-relaxosome-protein-MobC
MPRTDNHQVNIRVNEAEYAKIQASARIMGLSVPKYCKHLVMRSKLKEPKLADDEYHKIIVDLSRIGNNINQIARRLNQSKSEVAEEEWIAVKDQLEALDKEVAHVWLRLR
>NZ_CP011013.1|WP_045025421.1|1457449_1459027_-|relaxase/mobilization-nuclease-domain-containing-protein
MATIKMNRAKSAAAAISYALGSNRMKQETKDWLIKHGCPPGALKNNDRAVVRSGINISPTYANAEMKAVRQHANGDTVKNQAVRIIQSFSADDLDITSPENWQICNDIGYEFARRAFGGLDDENQDGYYPPYQIAVYTHVDGKGHKLHNHIIVNKTNLHDSKQWTVDNLDQEWRSFREINDAVCREYGLKITQERSKKVKKTISERELELKGQYVWKNDLRTRIDEALAEIRKKNINLEDALKARGVDVRRRGQNGISYAFIDEEGKKRISRGKRLGTNYERESVDGYEQEIKQQREQQERAREAARSVRLDVRRSTIDAVQNHQQQLEQSVGDAGERVERVGARKQAVIELVRSIQQAVDRSIALMKHLRADFERRKAEMKRFQDKIRQFDVKSYKDLEQQMCLVAKVAEQSKKTAAPKAIVAVTLRDELPENSSNPLIAATADMTQYLVMIDQGVWSGRQFEFSGREKEALEKATPEQLKKINGIAKRQAKRLSGIVDEAVERQKKNAERLRAVRNRGKRYRR
>NZ_CP011013.1|WP_045025420.1|1457153_1457453_-|hypothetical-protein
MTSRYDIAAIKKQLAAAEKHDKEIYGEKVRKMLLEKTNLDSLKDVLHDYDIIVLPKKKNDVPEKTEKPHLKSKNIPSVDEWNNRKDISETDFGTEEKLF
>NZ_CP011013.1|WP_158423331.1|1456872_1457049_-|hypothetical-protein
MKLNKMSKACIVAVMVAVFAVVPLVQLNAGQNANYVSASSKKVMKHYWGAGWQWFHGI
>NZ_CP011013.1|WP_052669296.1|1456383_1456869_-|GtrA-family-protein
MSVNKPVLKLIKNEKIKYLFWGIVTTVFYFVVRLLLDTFVTPVLSATITEILTIFFAFYVNRRFVFTKQKSKSLVYQLITFFSGRIVVMFADMLITFLAIEKYYAFFIAVFKLNTLAYALDSIIGINYLTGYRLNNLFWICIIQIFAIVFNFIVSKYLSFK
>NZ_CP011013.1|WP_045025419.1|1454603_1455425_-|alpha/beta-hydrolase
MSASLGDSQLLLETIDGQQLFVRQNLPVAPAAILVIVHGLGGHQGRYDYMTNYFVRHHVAVYRYDHRGHGQTPGPHGVYGDFNHFPDDLKTVVDWAKKNTPHLPIFVVGHSLGGGTAMAFGAKYPQTVNGIISVGALTRYHHQIFGPVRHFGDDETISGSFGDRSNSSAWIRQDYQDDPLNLTEIKGSLLNAAMDLVTFNRTHAVDFVDPVLILHGAEDGVVSVTDSMDSYREISSRDKELHIYPFLRHQVLNEPSRRLAVYQEILDWMKKHG
>NZ_CP011013.1|WP_045025418.1|1451159_1454486_-|DNA-polymerase-III-subunit-alpha
MEIVPLNVISTYSLLQSPLRPTELVQGAKSRGYRAVALADWNVMYGAIDFYNAAKAAGIKPLLGLRLHLKTMAMTTQGLEVLFLARTQAGYVNLMQLSTLKQTQAQGRFLTQQEIEPFLTDLDLILPAQPLTLDQTMIDQWLPALIEKTAGHCWLGVDLELDAIQREQIRQTARQYAVSLVAAPKIEYLENDDAFATDVLRHIDEGAKMTNPFFQAQNTISHALPTREQLQQAFLDSEFEGAAAQTAIIAQECNVEIKFQMPILPKFPTPNQQSAADYLKQLCLAGLKKRPLAAGYSPIDYEKRLQRELTTIHEMGFDDYFLIVWDVMRFAHQKKLATDPGRGSAAGSLVAYVLEITEVDPLKYQLLFERFLNPERAQMPDIDLDLPDNRRDEVLQYVHQKYGHARVAQIITFGTFGAKQAVRDVGRVFGMPVYAIDELARAIPNLPKITLQQALSESRALNNLLSDSAQNALLMKTALRIEGLPRHYSTHAAGVVLSQAPLNQLVPLQNGSDGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDSALQLIEKSQPDFDLHQINLNDPLTLKLFQKGATGGIFQFESSGIRQVLIRLHPENFEMIVAVNALYRPGPMDNIAHFIARKEGREKVTLPDPSLASILAPTYGILVYQEQVMQLAAKMAGFTLGQADLLRRAMSKKKADVMERMRGRFIKGAVANGYSRPVAEQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKCHFAPAFFAALLNAHAGSEKMRAYFEDAKSFGVVIAGPSINFSQADFSLYQGRVLFGLSMIKGVRRDLISEILLKRKDGQFASLADFIGRIDVRFRKPELIAPLIYAGAFDRLGSNRAEMIDALADLIEGAEFNQALLGSDTFQTMIPARPEYPLAQRLEKEHEYLGVYLSGHPVSQYRSLAGQLHAVTVAQLKEGMNATLILYVSRVKTINTKKTRQPMAFVSTSDETGSIEATVFPKQFQRYQELIAARNVLIISGRVENRNGSLQLLASRIQLASSAGERGSAPAKTRWFLQLRKNALTPRLTAQLQEFISSHHGNVPVMVYYPETRQTRLLPRSQWLSGDEATKKGLIDLLGVSNVVYQSTS
>NZ_CP011013.1|WP_034540901.1|1449579_1451001_-|pyruvate-kinase
MKKTKIVSTLGPASTDVDTIVKLINAGANIFRFNFSHGDHPEHLGRMNNVKKAQEITGKHVGLMLDTKGAEIRTTVEKDGKIEFNAGDKVRISMDDSIEGTHEKIAVTYPGLYDDVHVGGHVLFDDGLIDMIIDEKDEANHELVCTVQNHGLLGSRKGVNAPGVSINLPGITEKDSSDIRFGLEQGINYIAASFVRKPEDIEDIRALLKEKNMEDVQIFPKIESQEGIDNFEAIMAVADGLMVPRGDMGVEIPAENVPLVQKKMIRRCNEMGKPVITATQMLDSMEENPRPTRAEVSDVANAVFDGTDATMLSGESANGDWPVEAVSTMARIDVKAENNLDLFGTETFNFDKSDVTETIGSAVAQAAKDLDIKVIVAATSSGYTARMISKYRPNADILALTFDERTERGLMVNWGVQPYVVDKPADTDEMFALAAKKAVELGFAKSGDKIIVVAGVPMGTPGATNLMRVETIK
>NZ_CP011013.1|WP_045025556.1|1448561_1449446_-|DNA-binding-protein
MNSVLGKVVDAVMIDENDHDYFVQPARNGQTYRLPKDESPQALHIGGSVRGFVYENENHQLQMTCQHIPTIQVDHYDFGTVVGVRRDLGVFVDIGLPNKDIVVSLDDLPSLKRLWPQKGDRLMMALKVDEKNRIWGQLADEGVFEAIANRPDPRMKNKDVKATVYRLKMAGTFAITDDYCLGFIHPSERDQEPRLGQQVSARVIGLSSHGSLNLSLKPRAYQAIGEDAQMLLEMLRRTPDHTLPFTDKSDPEKIRQEFGISKGQFKRAVGHLLKARLVSMVNGKLILIKDPDDE
>NZ_CP011013.1|WP_158423332.1|1460902_1461973_-|DNA-primase
MDKDKILPNKYDNYILQNHEYDLGEISEEETVWDRWLKESIVDPNAKRDDQGLLRSEGDQKAVEVFKAYIGWAMAGSYKEFQHFLLIYGNGGEGKSTMLNMVENLFGQGNVANVDLGALGDSDKARFNLAKLNRKELNYSDDIGNGFIKETNILKRLTGGNRMTAEYKGKDPFEFTNEAKLIFTCNNLPSFSDTSHGMERRPIIIEWRRIKGFKEKYSMDQFERDKPAFVRECLVAYKSALQNAKNMVEPRLPMTEFMEQRAKEWIQANDVIGNWLAENCELGEDQKVYREQTAMLYNNYVRYCKDSGVQHLGITKFNVEMKNRGIEPNKNVRINGKQHKCYVGVRRIEKYGSDLY
>NZ_CP011013.1|WP_045025423.1|1462132_1463263_+|IS30-family-transposase
MTHLNDTMPTNLLATHRKYAHLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELNRGTVRQLRRQKSNGKIYEYSYYIYSYEAGQATYLEHHRHSGRRRLYYSSKQFLRLADQLMLGEFDDHHYSPQAVIYKARDLMNDGTLIPKSVVTLYQWINEGVLRTSNLDLFEKPKRKHHRTHPQAKRCLGPNIAQRPQTADQRSEIGHWELDTVQGQKNGNDSVVLVMTDRLSRVNITSKIAGKTAHAVNQFFINLRQKMGTDAYYRIFKTITSDNGSEFSELTQVHDHVFYADPYSPWERGSNEINNRFLRKEITKGEAINNYSSAQIIATNDWMNHYPRAMFNGHSSMDIYRKAFYQEISQLHQPIINWSVLFI
>NZ_CP011013.1|WP_045025424.1|1463290_1463650_-|hypothetical-protein
MEKKKNNKVIVINNWLYTKDEDGKIKVKLLNLANYLMNKYHFTFNLFDPHGFWWEPNKKQWHTHADRHLKKIIPEVLESEIGIMSGSVVSAIVSNITTSKGVDESLTDKFALESRNRHP
>NZ_CP011013.1|WP_045025425.1|1463743_1463929_-|helix-turn-helix-domain-containing-protein
MEQEYFSLTDAAKYLGYGSKHVVYDLIKAGMPVIKVGKTMRVSKTAIDSFMKAHEVVTDEK
>NZ_CP011013.1|WP_045025426.1|1464138_1465278_+|site-specific-integrase
MWTEPTKTGKVKFVEQFKNPLTLKYTRVSITMDKETNTTRKLAQQTLNKRIEEKLRHLADGQIKEGVTFGELIEEFDQYYKRTVKPSTFASWKVFKACVLKNFNSDVLVSKITNKYLTNTLEAMIYQRGYNNAYVGAIKSKINQIMRYAYRHDYIAAPIGQLEINWKRNNSAKSIEDKYLDDEEVKQVLEAVRSVNPMYADVLLWQYLTGMRIGEVLALQAKKIFQEDGKWFVKIDCTLEYSKRQKSEFTISSTPKTQSSNRTILLPDEAVRIYRLYSLGKQPDDLLFSIQTKTGVFIHPLSIDNRLKIVQEILELDKPLSTHIFRHTHASKLAELGVPIELISKRLGHKDSAITRQIYLHVTKKTAERYSGLINSLDV
>NZ_CP011013.1|WP_033934762.1|1465633_1465837_+|YjzD-family-protein
MRTIGKEIMIIIWSFILGDVLGYIAGQLESCTVNYVTTGIVAVVVALLATNCISLISKQANPEKAAK
>NZ_CP011013.1|WP_045025427.1|1465898_1466879_-|DNA/RNA-non-specific-endonuclease
MKQKMLKLLLMPLLALGIGIQTPSMPTGSHTVQSTVVKAAKKHQSQRVKKQAAASSSQSDEQLAQLNYQGTQTISVNNGQPDFTSEDLDTSHGAWQQYGNLDRLNRATQANALLNRSLMPKAKREPLNVTPTGWHNKKIKGGYLYNRSHLIGYQLTGQNNNWKNLITGTRSLNDPEMVRYEDEVADYLRTHPNDYVRYQVTPIFRGDELLARGVHMQAQSVNTQAIKFNVYIFNVQDGVTLNYADGTSTVDNSAQNVSSTPAVSKTANSQAPSQGNNDQTTVYVTPNGTKYHLNRNCRALARSKTVDSMTQGQAIADGYTLCGFER
>NZ_CP011013.1|WP_045025428.1|1467036_1467885_-|aldo/keto-reductase
MQTVTINQRVLAAVGLGTWHMGDDPAKRTMEIQALQAGIKAGAQVIDTAEMYGNGRAERLVAEAIKPFDRQDLFIIDKVLPQHASHAQLEQSLDRSLRNVGTDYFDLYLLHWRGQVPLAETVAELERVKQAGKIRAWGVSNFDVADLKELYALPNGDNCAANEDLYNLDRRGIEYDLLAWQKDQGLPLIAYSPVAQGDTLSGRLTADPTLQKLAARHHATVYQIMLAWTIRCGNTLTIPQTGNPEHARQNVAAGELEFSDAELLELERAFPSPHQKQPLATI
>NZ_CP011013.1|WP_045025429.1|1468035_1469286_-|peptidase-T
MTEEKYPELLPRFLKYVQVETRSDPQSATVPSSPKETAFLKQLAQELQDLGLSNVRIHPQNSYLLATIPSNLDHDAPVVGLIAHIDTADFNADHVRPQMIDDYDGQSDIALSDSGYQLSPAEFPSLKKYAHQTLITTDGRTLLGADDKSGVAEIVTMASYLLKHPEIKHGTIQIGLGPDEEIGTGADHFDVKDFGADFAYTVDGGPLGELEYETFNAAQAEITITGKDVHTGVAKGTMINAIQVGIDLHNRLPEHDRAEETAGREGFYHLYKFNGGVDHAEMTYLIRDHDRQKFEERKQNLKQIVAQLNEQLGEERIQMKLYDQYYNLKDALKDHMEVVAIAKQAMENLDIEPVIYPVRGGTDGSTISYLGLPTPNLFAGGENMHSRFEYVSLQTMEKALDVLLEIVKLTAQTPIK
>NZ_CP011013.1|WP_045025430.1|1469374_1470199_-|Nif3-like-dinuclear-metal-center-hexameric-protein
MTTGNDLIQRFEMFANPALAESWDHVGLQLGNPERPVKRVMTALDCRPEVVQEAIEKNVDFIFNHHPAMFHAAKTLDVRDPQIAMYQTLLEHGITVYAAHTNLDNANGGMNDWLATQLELTNVEPLQITGIDPISGRDYGMGRLGDLLQPMSPAAFGQWCLEKFQLNGARLIVNPADQKQLIKRVAILGGSGQDFWQLAKKRGADAYVTGDVSYHFAHDMIASHLTVVDAGHHIEAVCQDQLASLLKKWRQENDWDFEIITSEINTEPFKFIVK

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Crispr_ID: NZ_CP011013_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP011013_5

1511617-1514091

TypeII

Consensus_repeat	Method
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CRISPRCasFinder
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CRT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	PILER-CR

37 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP011013_5

>merge|NZ_CP011013|5|1511617-1514091|CRISPRCasFinder,CRT,PILER-CR
GAGAATTACATCATTGATTTAACATCCATCTAAAGCAATAACTCACTTTGGAGCGGTGATCCAGTTGAGAATTACATCATTGATTTAACATCCATCTAAAGCTGGTACGAATACGCCAATTCACCCAAGTATAATTACATCATTGATTTAACATCCATCTAAAGCCAAACAGATTGAGCAGACTACTACCGTTGATAGAATTACATCATTGATTTAACATCCATCTAAAGCCAATGATTATGGAACTGCTAGCTATTTCGATAGAATTACATCATTGATTTAACATCCATCTAAAGCCAGCTTCCTTCAATGCGTCTAATTGTGTCTTAGAATTACATCATTGATTTAACATCCATCTAAAGCCGGGTTATGATAGGTTTGTATAGTTTCTTGTAGAATTACATCATTGATTTAACATCCATCTAAAGCAGCAAAGTTAGCTAAAACAGCTAGAAAGTGTAGAATTACATCATTGATTTAACATCCATCTAAAGCGAATTAAGAGGTGAAAAAATGGACCTTACGAGAATTACATCATTGATTTAACATCCATCTAAAGCAATTGAAGGAGCAGATTTTATGAATAGCCGGAGAATTACATCATTGATTTAACATCCATCTAAAGCGGGCTTATGCTAAGCCACTGCTAACGGCTAGAGAATTACATCATTGATTTAACATCCATCTAAAGCTTCAATGAAAAACGCTTTGCCGTTTGACCAGAGAATTACATCATTGATTTAACATCCATCTAAAGCAAAGTTTGGCACGCCAGCCACTCCACACGTGAGAATTACATCATTGATTTAACATCCATCTAAAGCTTTACATTTTGTCAAAATTTATTGAGCTTAGAGAATTACATCATTGATTTAACATCCATCTAAAGCTTTGACCCGCCCAACGTTCTGCTGGGCACGGAGAATTACATCATTGATTTAACATCCATCTAAAGCTAAAAGAAAAAGCCCTACACACGGCTAGTGGAGAATTACATCATTGATTTAACATCCATCTAAAGCGCCTCAACCCGTGAATGCTCATAACTGGGAGAGAATTACATCATTGATTTAACATCCATCTAAAGCAACCGTAATAAGCGGTTGCTGTGCAAGCTCGAGAATTACATCATTGATTTAACATCCATCTAAAGCAATACTGTTTTATATATTTTATGATACTTTGAGAATTACATCATTGATTTAACATCCATCTAAAGCCTTCAAGATCGTTCTCGCGATAATAGGCACGAGAATTACATCATTGATTTAACATCCATCTAAAGCAATCATCAACGCTCATGCCGTATTTCTTAAGAGAATTACATCATTGATTTAACATCCATCTAAAGCGCCATTTTCCTCATCGTTATCTGACGCGTTGAGAATTACATCATTGATTTAACATCCATCTAAAGCAAATGAAATTGAGAAGCTCCAACCTGTACAGAGAATTACATCATTGATTTAACATCCATCTAAAGCTTGCTGCTGCAATCATTGCCGTTGGTGCTGGAGAATTACATCATTGATTTAACATCCATCTAAAGCAGTCTTTGGTTACCAAGAAAACAAGCAGTCGGAGAATTACATCATTGATTTAACATCCATCTAAAGCACCGGCGCAAGATTTTCAGAAATTATTGCTGAGAATTACATCATTGATTTAACATCCATCTAAAGCTGCGATTTTCAAGGGCCTTCTTGTTTTTAAGAGAATTACATCATTGATTTAACATCCATCTAAAGCCCTTATCGCCAATGTTCACTCTGATTTGGCGAGAATTACATCATTGATTTAACATCCATCTAAAGCACAGCTTTGATCGTATTTACGGCTGTGTTGGAGAATTACATCATTGATTTAACATCCATCTAAAGCAGCAGCATGCCACTTGGCACTGCCAATGCTGAGAATTACATCATTGATTTAACATCCATCTAAAGCCAGTCGAGCCGACTTTAAGCTGGCTAAGCAGAGAATTACATCATTGATTTAACATCCATCTAAAGCTCGGCTTGATCCAGCCGTACAAAAATCAATGAGAATTACATCATTGATTTAACATCCATCTAAAGCAAGCCCGGAATCAGCAATTAGAAATCTTAAGAGAATTACATCATTGATTTAACATCCATCTAAAGCCGTCGCGATATGACGCCACCGCAACTTGTTGAGAATTACATCATTGATTTAACATCCATCTAAAGCTTAGGAATGAAGACCTCTTTTGAGCCTTCAGAGAATTACATCATTGATTTAACATCCATCTAAAGCCTTGATGACGCGCCGAACTTTGAATCAAGTGAGAATTACATCATTGATTTAACATCCATCTAAAGCATCCCTGCACGAGCTTATCTGCGGTAGATTGAGAATTACATCATTGATTTAACATCCATCTAAAGCAAAGTTTTATTGTAGTATATAAACATACCAGAGAATTACATCATTGATTTAACATCCATCTAAAGC

>NZ_CP011013|5|5|1511617-1514091|CRISPRCasFinder
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AATAACTCACTTTGGAGCGGTGATCCAGTT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TGGTACGAATACGCCAATTCACCCAAG
TATAATTACATCATTGATTTAACATCCATCTAAAGC	CAAACAGATTGAGCAGACTACTACCGTTGA
TAGAATTACATCATTGATTTAACATCCATCTAAAGC	CAATGATTATGGAACTGCTAGCTATTTCGA
TAGAATTACATCATTGATTTAACATCCATCTAAAGC	CAGCTTCCTTCAATGCGTCTAATTGTGTCT
TAGAATTACATCATTGATTTAACATCCATCTAAAGC	CGGGTTATGATAGGTTTGTATAGTTTCTTG
TAGAATTACATCATTGATTTAACATCCATCTAAAGC	AGCAAAGTTAGCTAAAACAGCTAGAAAGTG
TAGAATTACATCATTGATTTAACATCCATCTAAAGC	GAATTAAGAGGTGAAAAAATGGACCTTAC
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AATTGAAGGAGCAGATTTTATGAATAGCCG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	GGGCTTATGCTAAGCCACTGCTAACGGCTA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTCAATGAAAAACGCTTTGCCGTTTGACCA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AAAGTTTGGCACGCCAGCCACTCCACACGT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTTACATTTTGTCAAAATTTATTGAGCTTA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTTGACCCGCCCAACGTTCTGCTGGGCACG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TAAAAGAAAAAGCCCTACACACGGCTAGTG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	GCCTCAACCCGTGAATGCTCATAACTGGGA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AACCGTAATAAGCGGTTGCTGTGCAAGCTC
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AATACTGTTTTATATATTTTATGATACTTT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CTTCAAGATCGTTCTCGCGATAATAGGCAC
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AATCATCAACGCTCATGCCGTATTTCTTAA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	GCCATTTTCCTCATCGTTATCTGACGCGTT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AAATGAAATTGAGAAGCTCCAACCTGTACA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTGCTGCTGCAATCATTGCCGTTGGTGCTG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AGTCTTTGGTTACCAAGAAAACAAGCAGTCG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	ACCGGCGCAAGATTTTCAGAAATTATTGCT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TGCGATTTTCAAGGGCCTTCTTGTTTTTAA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CCTTATCGCCAATGTTCACTCTGATTTGGC
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	ACAGCTTTGATCGTATTTACGGCTGTGTTG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AGCAGCATGCCACTTGGCACTGCCAATGCT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CAGTCGAGCCGACTTTAAGCTGGCTAAGCA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TCGGCTTGATCCAGCCGTACAAAAATCAAT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AAGCCCGGAATCAGCAATTAGAAATCTTAA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CGTCGCGATATGACGCCACCGCAACTTGTT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTAGGAATGAAGACCTCTTTTGAGCCTTCA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CTTGATGACGCGCCGAACTTTGAATCAAGT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	ATCCCTGCACGAGCTTATCTGCGGTAGATT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AAAGTTTTATTGTAGTATATAAACATACCA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC

>NZ_CP011013|5|2|1511617-1514091|CRT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AATAACTCACTTTGGAGCGGTGATCCAGTT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TGGTACGAATACGCCAATTCACCCAAG
TATAATTACATCATTGATTTAACATCCATCTAAAGC	CAAACAGATTGAGCAGACTACTACCGTTGA
TAGAATTACATCATTGATTTAACATCCATCTAAAGC	CAATGATTATGGAACTGCTAGCTATTTCGA
TAGAATTACATCATTGATTTAACATCCATCTAAAGC	CAGCTTCCTTCAATGCGTCTAATTGTGTCT
TAGAATTACATCATTGATTTAACATCCATCTAAAGC	CGGGTTATGATAGGTTTGTATAGTTTCTTG
TAGAATTACATCATTGATTTAACATCCATCTAAAGC	AGCAAAGTTAGCTAAAACAGCTAGAAAGTG
TAGAATTACATCATTGATTTAACATCCATCTAAAGC	GAATTAAGAGGTGAAAAAATGGACCTTAC
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AATTGAAGGAGCAGATTTTATGAATAGCCG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	GGGCTTATGCTAAGCCACTGCTAACGGCTA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTCAATGAAAAACGCTTTGCCGTTTGACCA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AAAGTTTGGCACGCCAGCCACTCCACACGT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTTACATTTTGTCAAAATTTATTGAGCTTA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTTGACCCGCCCAACGTTCTGCTGGGCACG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TAAAAGAAAAAGCCCTACACACGGCTAGTG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	GCCTCAACCCGTGAATGCTCATAACTGGGA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AACCGTAATAAGCGGTTGCTGTGCAAGCTC
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AATACTGTTTTATATATTTTATGATACTTT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CTTCAAGATCGTTCTCGCGATAATAGGCAC
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AATCATCAACGCTCATGCCGTATTTCTTAA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	GCCATTTTCCTCATCGTTATCTGACGCGTT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AAATGAAATTGAGAAGCTCCAACCTGTACA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTGCTGCTGCAATCATTGCCGTTGGTGCTG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AGTCTTTGGTTACCAAGAAAACAAGCAGTCG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	ACCGGCGCAAGATTTTCAGAAATTATTGCT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TGCGATTTTCAAGGGCCTTCTTGTTTTTAA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CCTTATCGCCAATGTTCACTCTGATTTGGC
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	ACAGCTTTGATCGTATTTACGGCTGTGTTG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AGCAGCATGCCACTTGGCACTGCCAATGCT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CAGTCGAGCCGACTTTAAGCTGGCTAAGCA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TCGGCTTGATCCAGCCGTACAAAAATCAAT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AAGCCCGGAATCAGCAATTAGAAATCTTAA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CGTCGCGATATGACGCCACCGCAACTTGTT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTAGGAATGAAGACCTCTTTTGAGCCTTCA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CTTGATGACGCGCCGAACTTTGAATCAAGT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	ATCCCTGCACGAGCTTATCTGCGGTAGATT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AAAGTTTTATTGTAGTATATAAACATACCA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC

>NZ_CP011013|5|2|1512933-1514091|PILER-CR
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	GCCATTTTCCTCATCGTTATCTGACGCGTT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AAATGAAATTGAGAAGCTCCAACCTGTACA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTGCTGCTGCAATCATTGCCGTTGGTGCTG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AGTCTTTGGTTACCAAGAAAACAAGCAGTCG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	ACCGGCGCAAGATTTTCAGAAATTATTGCT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TGCGATTTTCAAGGGCCTTCTTGTTTTTAA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CCTTATCGCCAATGTTCACTCTGATTTGGC
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	ACAGCTTTGATCGTATTTACGGCTGTGTTG
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AGCAGCATGCCACTTGGCACTGCCAATGCT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CAGTCGAGCCGACTTTAAGCTGGCTAAGCA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TCGGCTTGATCCAGCCGTACAAAAATCAAT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AAGCCCGGAATCAGCAATTAGAAATCTTAA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CGTCGCGATATGACGCCACCGCAACTTGTT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	TTAGGAATGAAGACCTCTTTTGAGCCTTCA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	CTTGATGACGCGCCGAACTTTGAATCAAGT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	ATCCCTGCACGAGCTTATCTGCGGTAGATT
GAGAATTACATCATTGATTTAACATCCATCTAAAGC	AAAGTTTTATTGTAGTATATAAACATACCA
GAGAATTACATCATTGATTTAACATCCATCTAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP011013.1\|WP_006499802.1\|1514119_1514296_-\|hypothetical-protein	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP011013.1\|WP_034540933.1\|1508271_1508451_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_045025446.1\|1503061_1505296_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP011013.1\|WP_006499808.1\|1506492_1507449_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|234786
NZ_CP011013.1\|WP_039945658.1\|1517545_1521736_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP011013.1\|WP_045025444.1\|1499030_1500323_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|273080
NZ_CP011013.1\|WP_033935617.1\|1502612_1503050_-\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP011013.1\|WP_034539119.1\|1514371_1515562_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP011013.1\|WP_033935639.1\|1500658_1501537_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_CP011013.1\|WP_039945662.1\|1516148_1516454_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP011013.1\|WP_039945660.1\|1516431_1517337_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP011013.1\|WP_039945656.1\|1522199_1522628_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379728
NZ_CP011013.1\|WP_045025564.1\|1515657_1516152_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP011013.1\|WP_006499797.1\|1522645_1523416_+\|DUF1828-domain-containing-protein	unknown	unknown	gnl\|CDD\|378071
NZ_CP011013.1\|WP_045025445.1\|1501557_1502409_+\|fructosamine-kinase-family-protein	unknown	unknown	gnl\|CDD\|367711
NZ_CP011013.1\|WP_006499809.1\|1505733_1506480_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP011013.1\|WP_006499810.1\|1505279_1505669_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_006499796.1\|1523874_1525716_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP011013.1\|WP_006499807.1\|1507510_1507816_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP011013.1\|WP_080890493.1\|1523544_1523778_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189

Protein	Function_ID	Function_description	E-value
NZ_CP011013.1\|WP_006499802.1\|1514119_1514296_-\|hypothetical-protein	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.33165e-15
NZ_CP011013.1\|WP_045025446.1\|1503061_1505296_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP011013.1\|WP_006499808.1\|1506492_1507449_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	6.88797e-104
NZ_CP011013.1\|WP_039945658.1\|1517545_1521736_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.49537e-138
NZ_CP011013.1\|WP_045025444.1\|1499030_1500323_-\|histidine--tRNA-ligase	gnl\|CDD\|273080	TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. [Protein synthesis, tRNA aminoacylation].	0
NZ_CP011013.1\|WP_033935617.1\|1502612_1503050_-\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	2.8268e-96
NZ_CP011013.1\|WP_034539119.1\|1514371_1515562_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	2.06672e-113
NZ_CP011013.1\|WP_033935639.1\|1500658_1501537_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	2.94901e-65
NZ_CP011013.1\|WP_039945660.1\|1516431_1517337_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.17282e-97
NZ_CP011013.1\|WP_039945656.1\|1522199_1522628_+\|hypothetical-protein	gnl\|CDD\|379728	pfam15529, Ntox24, Bacterial toxin 24. A predicted RNase toxin found in bacterial polymorphic toxin systems. The toxin possesses an all-beta fold and conserved ND and DxxR motifs and a histidine residue. In bacterial polymorphic toxin systems, the toxin is exported by the type 2 or TcdB/TcaC secretion system. Interestingly, the toxin is also found in type-II toxin-antitoxin systems.	0.00872989
NZ_CP011013.1\|WP_045025564.1\|1515657_1516152_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.10155e-43
NZ_CP011013.1\|WP_006499797.1\|1522645_1523416_+\|DUF1828-domain-containing-protein	gnl\|CDD\|378071	pfam08861, DUF1828, Domain of unknown function DUF1828. This presumed domain is functionally uncharacterized.	7.63912e-20
NZ_CP011013.1\|WP_045025445.1\|1501557_1502409_+\|fructosamine-kinase-family-protein	gnl\|CDD\|367711	pfam03881, Fructosamin_kin, Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function.	1.46236e-87
NZ_CP011013.1\|WP_006499809.1\|1505733_1506480_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	4.4206e-73
NZ_CP011013.1\|WP_006499796.1\|1523874_1525716_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP011013.1\|WP_039945662.1\|1516148_1516454_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.74667e-24
NZ_CP011013.1\|WP_080890493.1\|1523544_1523778_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.08795e-18

>NZ_CP011013.1|WP_034540933.1|1508271_1508451_+|hypothetical-protein
MELLLTLVGLWLLWKLFKLSLHLLFWIAIIAVAAFFVKTLILPAILLIGGIIGWGVLRG
>NZ_CP011013.1|WP_006499807.1|1507510_1507816_-|hypothetical-protein
MRDNDLDYKREYIRPMMTPEHVYIFRFGRHKLNNRVIVRYSHTWTGRLKINEIDVRLHHQHHPRIFKTETDLILYLQQHMEKEEQKKIAKQAVKHDDPQNQ
>NZ_CP011013.1|WP_006499808.1|1506492_1507449_-|50S-ribosomal-protein-L11-methyltransferase
MNDWTAVTVETSTEAVDAVSYILTDTGAAGIQIEDAADFAKLKPGRYGDEIIDPSSIPHRQTGAAVTGYYPSSVFVPELLPGIKQRVLKLKDFGLDPMPAEVKSEAIENQDWKTAWEKYYHPVRVTRTLTVVPEWEDYQPSSDEKLLILDPGMAFGTGTHPTTQLMLQALELTVRGGESMLDVGTGSGVLSIAAKLLGVGKIKAYDIDEVAVRSAKKNLALNPAAKDVEIGVNSLLDGIHDQDADLIVANILAEIILPLIPQAYENLKPGGHFLTSGIINDKFDEVAQGLRDGGFKIDETMRIKDWYGIIAHKPTHAE
>NZ_CP011013.1|WP_006499809.1|1505733_1506480_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFINEPVPEDQRLVLPKDIAHHLVDVLRAEQNDELEVALNDQKVYLARLISLNPATIELQSDLGTDAELPVEVILACGLPKTKEKPELIVQKATEMGASRIVFFAAQRSISRWNPQKQAKKIERLQKIANAAAEQSHRNRQPEVVYGGKLSDVLKNEPADFKIVAWEESAKQGEEANLAKTLKQLQPGQKLLAVFGPEGGLSAAEVDQMKEQGVVPAGLGPRILRTETAPLYLLAAVSYQLELAR
>NZ_CP011013.1|WP_006499810.1|1505279_1505669_-|hypothetical-protein
MEKLQQFWRTTDRRLLISDLVLSLVINPLFLKQHVVSRVQVIIWLLVLVNFCYVVWAGRRIAKQQDRSWQLLVFPVGYLIGVRLFQVSRYTYYFALVYLGIEYLAKAMTQDAVKNQSKESKLMQDVKKQ
>NZ_CP011013.1|WP_045025446.1|1503061_1505296_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MSKNNELTHEDVKKIVSSYMNEEHVEMVERAYHFAAVAHADQHRKSGEAYIIHPIQVAGILANLHMDPETVCAGYMHDIVEDTGATLDDIRELFGPTIAMIVDGDTKISKIHYKSNKEQMAETHRKLLLAMSKDIRVMIVKLADRLHNMRTLQHLRPDKQRRIANETLEIYAPIADRLGISTIKWELEDLSLRYLNPQQYYRIVHLMNSRRDQRVEYINRAIVDVKKAISDLELGPNVEIYGRPKHIYSVYRKMVTQHKQFEQIYDLLAIRVVVDSIKDCYAVLGAVHTNWKPMPGRFKDYIAMPKANGYQSLHTTVIGPEGRLLEIQIRTHDMHEVAEYGVAAHWAYKEGKTNGIKQTQDSKKLNVVKEILELQSESQGTDEFLQGIQSDVFADKVYAFTPKGDVIEMPKGAGPLDMAYQIHTEVGNHTTGAKVNGRIVPLNYEIKNGDIVDILTSSSSAGPSRDWLDLVFTRRARNKIRQFFRAHDHDKNVESGRQIIASQLRDAGYDPNELMTTEKNNQIADQMHYKTADDMFAAVGFGDVPPIGVRNRFTADIRKKEADDKQRAAQKAVLEDHQTFENKNVNNQRKFAKSSEGVVVEGVDNLLTRLSHCCSPVPGDEIVGYITKGRGVSVHRADCPNVKAAEKNGERLVSVFWANPAGDKTNYNADIEVEGYNRNGLLNDVLRSINNNTRFLTSVNGKVDHNKMATISATIGVRNSQHLQLILDSLKNIPDVYVVKRVIR
>NZ_CP011013.1|WP_033935617.1|1502612_1503050_-|D-tyrosyl-tRNA(Tyr)-deacylase
MRVVLQRVNHAAVRIDGETVGQIQKGYLLLVGLAPEDTDEQLDWMVHKIVNLRVFEDENGKLNRALADVNGEILSISQFTLYADVKHGNRPGFSKAAKPEIAAPLYDRFNEKLRQAGVHVETGRFGADMKVELENDGPVTILYEK
>NZ_CP011013.1|WP_045025445.1|1501557_1502409_+|fructosamine-kinase-family-protein
MSAYQLNQKWLSQLPFRQIQDCQPVAGGDINAAYQIKADQRTYFLKVQPHYPASYFNHEKRGLEAIGALVKTPAPLAQGQIQGDAYLVLEWLESGSGSQADLGRAVARMHAQHAKQFGFYENHTTRALVKNNAWNDSWRDFYLKQRLDPEITVAKENGRWNDWRETHYQRMRQAFSDYYDQHQVIPSLLHGDLWAGNYMFDETGQPVLIDPDAVYGDREFDLAMTTIFGGFEPAFYQAYQQEYPLAKGVNERLPWYQFYYLCMHLILFGETYGPAVDGILERY
>NZ_CP011013.1|WP_033935639.1|1500658_1501537_+|N-acetylmuramoyl-L-alanine-amidase
MIHDKGAKILKFHRPAKAVLVAISMALIAIVMVVALTFSRTTTIETSGLNVRTGPGLDYATIGTVKKGQRVTILKTRNSWYKIRLSDQRFGWVASWLVHPKNNLKHVSNLSEATIVIDPGHGGSDSGAEYKDSTSKRYMEKTYTLQLANRVAQELRLRGAHVIMTRDSDRYVGLKPRPALAESMHADAFISFHFDSSPARNEASGFTTYYYHKGASKRLAKALNKQLNNLPLTNRGIEFGDFLVIRDNTRPAVLCEMGYINSTKDFNQIKNASYQQKIARDIAKGLNNYFKN
>NZ_CP011013.1|WP_045025444.1|1499030_1500323_-|histidine--tRNA-ligase
MRYQRPKGTADILPGESAQWEAVEKLAREIFARYGYREIRTPIFENYNIFARSAGETSDVVTKEMYDFKDKGDRHVALRPEGTAGVVRAYVENKLYGPEYNKPYKVYYMGPMFRYERPQSGRQREFHQIGVEAFGSDNPAVDVEVMTMALRLFKQLGLTGLRVAINTLGDQETRDTYRQALIDYLKPHYDELSEDSQERLEKNPLRVLDSKDPRDKQFVDDAPSILDYLTDDAQKHFDLVKEMLDELDIDYTVDPTMVRGLDYYNHTIFEVMVQAKSLGQGYTTICGGGRYSGLVEELGGPDTPGVGFGIGLERLMLLLNEEGLLKKADPDLDVYVVGIGEATNTASFKLVEAARDAGFVAERDYLNRKPKAQFKTAAKENAKVVLTIGQKELESGTVHFKVMATGEETTLPLDRIFADFKAVYQEQTKG
>NZ_CP011013.1|WP_006499802.1|1514119_1514296_-|hypothetical-protein
MKNIANFLLPEQFKAFLQLVEESGLAVFLLEFSEKQQRAYYQNADVYWIDEDFVDWHL
>NZ_CP011013.1|WP_034539119.1|1514371_1515562_-|IS256-family-transposase
MNQFNKEILDALSSDSKTSLKDVFRNQLEQTVNTLLQEELSAVLGYQPYERNDSSAHGDNARNGSYQRTIDTEFGPINITVPRDRKNKFRNALFEPYSRRTDTLESMIIKMYSKGITTREIADLVERMYGDYYSPTTVSNITKQVGNLVEEFHDRTFKHSQYVCVFLDATYIPLKRGTVEREAVNIAIGIRSDGGKEVLDFSVAPNENGEAWRELLESLRNRGIEQVQLFIADGFIGLENVIAEIYPNAKFQRCLVHVLRNLTSHVRKSDMRDLMSEFKEIRQSESIEEAKQALDNFILKWKSKYSNQMRKLGKLSNLFTFYEFPPSIRASIYSTNLIEAFNKKLKKKIRQKEQFPNEDALQRFVTTQILEYNDKFEERAHRGFRGSKDTLDSMFI
>NZ_CP011013.1|WP_045025564.1|1515657_1516152_-|type-II-A-CRISPR-associated-protein-Csn2
MNLIYAAHQPMELENGRVTVLMTNNQNVYFEMTQALAGKNDLLRLIDDDFSELNLSTALCWDADLSSAPDLMDKYGSALIKKISNELTVDQRQQLLVKQQELLTSIQDTLFSIDLPLEVSLDDGFQRLYKYARPHFISSANTTPYDIIKNDLNIHLELNDCRGV
>NZ_CP011013.1|WP_039945662.1|1516148_1516454_-|CRISPR-associated-endonuclease-Cas2
MRLMVMFDLPVETSKQRREYRKFHKRLIQEGFLMIQYSVYARVCVSRQSANFMEQRIKAFLPDEGVVQTFMMTEKQYNDMHFLRGKKVQDVRNTSKRTIVL
>NZ_CP011013.1|WP_039945660.1|1516431_1517337_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSVIVTQHAKMSYSAGLMVVQTMDGTSEIPLDDMALLMVSTTQAVITSALISALVKNNIKVIFVDHAHQPIGEVNGYQSANRDCKVLENQFNWQQQRKDVLWTKIVAAKINNQISVLKCFHKDVECLQNELDQLEVGDETNREAVVARKYFPLLYNDDFSRHNGSAINAALDYGYSILLSETNRIIAGNGYLTELGIHHRNQANHFNLGSDLMEPFRPIIDYWVAGQKFRELTPEVKIGLIDCMNIEIIFNGKKEILRNAISRYVTDCLNYLSGDKDETRIEVEFTSEVPNDALNGNV
>NZ_CP011013.1|WP_039945658.1|1517545_1521736_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MDSSKQGLRRYHLGLDIGTNSIGWTAIDDHFSLLRVKGKNAIGVRTFKEGETAADRRGFRTARRRLSRRRWRLQFLDEFFAPYLAEVDPNFLARLKQSDISAKDPAKNQEYMGKLLFPDQEAASDGNGYPTLIQMRKAMPAEKAADFPVFNIYQLRYALMNEKRKFDLREIYLAVHHIVKYRGNFLNNTSVDKFKADQIDFNKSFETLNDLFRQVQPIAPFQIDLTKVDELGKLLLDTKQKKLDRQKAVAKLLPLIEDGTDKEIVKAHQQTAREISKLILGYKAKVGLILQNNLDQTLDMSTENSDDQLMQIAEELDDYQMELINQLSLLYSQIMLNEIVPNGETVSASMLNRYYKHRCQLKELKDYGAAQDKKTREQLDHLYAEYIGQIPKDSKFDFTKDLKKLMDKSDLGQKIKDEIEAGDYLPKQRTSANGVIPHQMHQQELDQIIENQKEYYPWLAEPNPVEKNIKNAKYKLDQLVSFRVPYYVGPMITLADQQKTSKASFAWAVRKKAGKITPWNFYDMIDREKSANNFIKRMTNKDTYLLSEDVLPASSLLYQKFTVLNELNNIRVNGRKLQPALKQAIYTDLFQKRKTVNLKTLTNFLAIHEPTLTKPKIEGLSNGRSFNSSLGTYIDMSKILGDSLDDLNYRDDIEKIIEWSTVFEDSEIYGVKLQEIQWLTNEQREKLVRKRYQGWGRLSKKLLTGITDENGQRIIDLMWDTSKNFMQIVHQPVFEEQIAELNQQLLQDADKAPLEVVDDILADAYTSPQNKKAIRQVVKVVADVVKAVGNAPASISIEFARNEDRNKELKNSRRHSIEKLYHETAEKLVKQTNLLEELGNVKDLNDRYYLYFTQAGRDMYDGTPINIDEISTHYEIDHILPQSFLKDNSLDNRVLVKKSENAAKSDRVPAKLYGAKMRAFWKQLKESQLISNRKYLNLTTDPEQVDKYQMQGFVHRQLVETRQIIKLAANIFGSLYPDSAVIETRAELTKQLREKFSLYKVRDVNDYHHAVDAYLTAFAGHYLYQRYPKLRPMFVYGDYAKIYADDLKRLRSVNLFHDLEKDQYNSGTAVNPETKEKIVDVDWLSDYVSKIQHFKYMLISKAVYTQHGQLYGATILPVAQVDKISAPIGIKDDKPVDIYGAYTNEVAAYMAIVRVNGKKPKYKVVSVPVRMLQRLKMAEQKGHDQYMQTLHDVLLRNFTSLKKNRKTGLKEAVVKDFDVLVPCVRYNQLVIDGDTKFTLGSATYQHNAKQLVLCNHSLETLANNFEYVRKHPDEADERMIMLYDDILDQVNHYFTLYDKNKFREKLNAGRDKYLKLPTFSQFENNKKTAIGKSEAIINILRGLHANAAITNLKCLGVSTPFGQLQSPSGIELSENAKLVYQSPTGLFSREVLLKDL
>NZ_CP011013.1|WP_039945656.1|1522199_1522628_+|hypothetical-protein
MKNSEYKALHDLPKKTKSTHLLCAANGQQANYDGFALLEPSNTFKVIQNRKGHRRTNCLSYMLFHHKSEKMIRIDLNGKPHEGVATPHVHIFDDQHQNGQHAIPLTNLVNYNCTDEIVTSLMEFLKYNNFEISDITIEQPLI
>NZ_CP011013.1|WP_006499797.1|1522645_1523416_+|DUF1828-domain-containing-protein
MNTVKLLDNYFEWLKKGYTINHLGKCDEIVTPFVDDINDNITIYVEEVSDKQIMLTDDGYTITNLEFMGIKLTPTRRRLIDSVCQQFHIKIIEDETLSIVGTPKEFPIMKYQLTSAILRINDISFTQKENVKNFFAEDVLNYFDTNNFGGLPTSVRGQSGVEYKFLYALPKRKDKPLILFNIQNNISANEIMLDAFKHNDIKKSANLSNMYAQSRYVVIFNEKQKNISEKAAKIAQAYDIDVISWENKAALAELKN
>NZ_CP011013.1|WP_080890493.1|1523544_1523778_+|tyrosine-type-recombinase/integrase
MSVKYMSDRIHVKLGFPFNFHSLRHTHATMLLEAGASPKEVQVRLGHSRISTTLDTYVHLSDSKKRQTADLFDQVSS
>NZ_CP011013.1|WP_006499796.1|1523874_1525716_-|elongation-factor-4
MNLEEMKERQKHIRNFSIVAHIDHGKSTLADRILEMTDSISKREMKAQILDDMPLERERGITIKLNAVALTYHAKDGEDYIFHLIDTPGHVDFSYEVSRSLAACEGAILVVDATQGVEAQTLANVYLALDNDLEILPVINKIDLPSADVAGTKKQIEEEIGLDCSDACDVSAKTGLGVEKVLEKIVAEVPAPTGDLTAPLKALIFDSKYDDYRGVVLSVRVFEGTVKKGDRIKLMNSGTEYEVAEVGINSPKPLARDFLMAGDVGYITAAIKDIKDTRVGDTVTDAKHPTDKPLAGYRQMTPMVYAGLYPTDNAKFNDLRDALEKLQLNDAALTFEPESSQALGFGFRCGFLGLLHMDVVQERLEREFNLDLITTAPSVTYHVDLHDGTMKEVENPAEMPDTSSIKDIKEPYVKASIMVPNDYVGPVMELCQRKRGEFDTMEYLSETRVNVIYHIPLSEIIFDFFDKLKSSTHGYASLDYEIDDYRVSDLVKIDILLNGDKVDALSFIAHRDFAEERGREITTKLKKIIPRQNFEIPIQAAIGSKIIARTNIKAYRKDVTARIHTGDPDRRAKLLDKQKRGKKRMKAVGRVEVPQEAFMAVLKTDEEIDEKKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP011013_5	5.2\|1511719\|27\|NZ_CP011013\|CRISPRCasFinder,CRT	1511719-1511745	27	NZ_CP011014.1	5443-5469	2	0.926

1. spacer 5.2|1511719|27|NZ_CP011013|CRISPRCasFinder,CRT matches to position: 5443-5469, mismatch: 2, identity: 0.926

tggtacgaatacgccaattcacccaag	CRISPR spacer
tggcacaaatacgccaattcacccaag	Protospacer
***.**.********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP011013_5	5.2\|1511719\|27\|NZ_CP011013\|CRISPRCasFinder,CRT	1511719-1511745	27	NZ_CP011014	Lactobacillus mucosae LM1 plasmid pLM1, complete sequence	5443-5469	2	0.926
NZ_CP011013_5	5.6\|1511980\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1511980-1512009	30	NZ_CP011014	Lactobacillus mucosae LM1 plasmid pLM1, complete sequence	57740-57769	4	0.867
NZ_CP011013_5	5.23\|1513101\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513101-1513130	30	NC_005893	Lactobacillus phage phiAT3, complete genome	10997-11026	4	0.867
NZ_CP011013_5	5.23\|1513101\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513101-1513130	30	AY605066	Bacteriophage phi AT3, complete sequence	10997-11026	4	0.867
NZ_CP011013_5	5.2\|1511719\|27\|NZ_CP011013\|CRISPRCasFinder,CRT	1511719-1511745	27	MT773555	Myoviridae sp. isolate BML_3 genomic sequence	144174-144200	5	0.815
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	75319-75348	5	0.833
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP013199	Spiroplasma citri strain R8-A2 plasmid pSCI15, complete sequence	11033-11062	5	0.833
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP013198	Spiroplasma citri strain R8-A2 plasmid pSCI26, complete sequence	11643-11672	5	0.833
NZ_CP011013_5	5.21\|1512969\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1512969-1512998	30	NZ_CP021525	Acetobacter ascendens strain SRCM101447 plasmid pAP1447-1	254381-254410	5	0.833
NZ_CP011013_5	5.32\|1513696\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513696-1513725	30	MK504442	Lactobacillus phage 3-SAC12, complete genome	12129-12158	5	0.833
NZ_CP011013_2	2.3\|183012\|28\|NZ_CP011013\|CRISPRCasFinder	183012-183039	28	NZ_CP032534	Bacillus megaterium NCT-2 plasmid pNCT2_6, complete sequence	6695-6722	6	0.786
NZ_CP011013_2	2.3\|183012\|28\|NZ_CP011013\|CRISPRCasFinder	183012-183039	28	MN871452	UNVERIFIED: Serratia phage KpZh_1, complete genome	1170-1197	6	0.786
NZ_CP011013_2	2.3\|183012\|28\|NZ_CP011013\|CRISPRCasFinder	183012-183039	28	MN871453	UNVERIFIED: Serratia phage KpZh_LPS_45, complete genome	167738-167765	6	0.786
NZ_CP011013_2	2.3\|183012\|28\|NZ_CP011013\|CRISPRCasFinder	183012-183039	28	MN871448	UNVERIFIED: Serratia phage KpSz_1, complete genome	60910-60937	6	0.786
NZ_CP011013_2	2.3\|183012\|28\|NZ_CP011013\|CRISPRCasFinder	183012-183039	28	KJ018211	Shewanella sp. phage 1/40, complete genome	89968-89995	6	0.786
NZ_CP011013_2	2.3\|183012\|28\|NZ_CP011013\|CRISPRCasFinder	183012-183039	28	KJ018209	Shewanella sp. phage 1/4, complete genome	86641-86668	6	0.786
NZ_CP011013_3	3.12\|1305991\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305991-1306022	32	NZ_LR723673	Rhizobium flavum strain YW14 plasmid 4	118449-118480	6	0.812
NZ_CP011013_5	5.5\|1511914\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1511914-1511943	30	NZ_CP035178	Lactobacillus plantarum strain SRCM103426 plasmid unnamed4	929-958	6	0.8
NZ_CP011013_5	5.13\|1512441\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512441-1512470	30	NZ_KX274135	Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence	36428-36457	6	0.8
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP023312	Vibrio anguillarum strain VIB12 isolate Sea bass plasmid p292, complete sequence	10010-10039	6	0.8
NZ_CP011013_5	5.22\|1513035\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513035-1513064	30	NZ_KX893538	Pseudomonas fluorescens strain PC20 plasmid pG20, complete sequence	50115-50144	6	0.8
NZ_CP011013_5	5.22\|1513035\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513035-1513064	30	NZ_MH061177	Pseudomonas fluorescens strain P69 plasmid pG69, complete sequence	45730-45759	6	0.8
NZ_CP011013_5	5.23\|1513101\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513101-1513130	30	NC_003276	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence	187870-187899	6	0.8
NZ_CP011013_5	5.23\|1513101\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513101-1513130	30	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1850950-1850979	6	0.8
NZ_CP011013_5	5.23\|1513101\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513101-1513130	30	NC_013085	Synechococcus phage S-RSM4, complete genome	169884-169913	6	0.8
NZ_CP011013_5	5.23\|1513101\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513101-1513130	30	FM207411	Synechococcus phage S-RSM4 complete genome	169884-169913	6	0.8
NZ_CP011013_5	5.37\|1514026\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1514026-1514055	30	MT774386	CrAssphage cr110_1, complete genome	86413-86442	6	0.8
NZ_CP011013_2	2.2\|182958\|28\|NZ_CP011013\|CRISPRCasFinder	182958-182985	28	AP013406	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S46-C34	5240-5267	7	0.75
NZ_CP011013_2	2.3\|183012\|28\|NZ_CP011013\|CRISPRCasFinder	183012-183039	28	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	208990-209017	7	0.75
NZ_CP011013_2	2.3\|183012\|28\|NZ_CP011013\|CRISPRCasFinder	183012-183039	28	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	209030-209057	7	0.75
NZ_CP011013_3	3.11\|1305930\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305930-1305961	32	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	622824-622855	7	0.781
NZ_CP011013_3	3.25\|1305991\|33\|NZ_CP011013\|PILER-CR	1305991-1306023	33	NZ_LR723673	Rhizobium flavum strain YW14 plasmid 4	118448-118480	7	0.788
NZ_CP011013_5	5.1\|1511653\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1511653-1511682	30	NZ_CP026684	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence	103587-103616	7	0.767
NZ_CP011013_5	5.5\|1511914\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1511914-1511943	30	NZ_CP035189	Bacillus licheniformis strain SRCM103914 plasmid unnamed1, complete sequence	181841-181870	7	0.767
NZ_CP011013_5	5.5\|1511914\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1511914-1511943	30	NZ_CP021678	Bacillus licheniformis strain SRCM100027 plasmid pBL027-1 sequence	92628-92657	7	0.767
NZ_CP011013_5	5.7\|1512046\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512046-1512075	30	NZ_CP028345	Vibrio parahaemolyticus isolate R13 plasmid pVpR13_55Kb, complete sequence	25775-25804	7	0.767
NZ_CP011013_5	5.7\|1512046\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512046-1512075	30	NZ_CP034303	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-4, complete sequence	65024-65053	7	0.767
NZ_CP011013_5	5.7\|1512046\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512046-1512075	30	NZ_CP028144	Vibrio parahaemolyticus strain R14 plasmid pVpR14_56Kb, complete sequence	3897-3926	7	0.767
NZ_CP011013_5	5.8\|1512112\|29\|NZ_CP011013\|CRISPRCasFinder,CRT	1512112-1512140	29	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	485501-485529	7	0.759
NZ_CP011013_5	5.8\|1512112\|29\|NZ_CP011013\|CRISPRCasFinder,CRT	1512112-1512140	29	MN552143	Lactococcus phage P1046, complete genome	3554-3582	7	0.759
NZ_CP011013_5	5.8\|1512112\|29\|NZ_CP011013\|CRISPRCasFinder,CRT	1512112-1512140	29	NC_010576	Lactococcus phage 1706, complete genome	4748-4776	7	0.759
NZ_CP011013_5	5.8\|1512112\|29\|NZ_CP011013\|CRISPRCasFinder,CRT	1512112-1512140	29	MK779875	Lactococcus phage CHPC971, complete genome	4519-4547	7	0.759
NZ_CP011013_5	5.9\|1512177\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512177-1512206	30	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	245168-245197	7	0.767
NZ_CP011013_5	5.9\|1512177\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512177-1512206	30	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	397783-397812	7	0.767
NZ_CP011013_5	5.9\|1512177\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512177-1512206	30	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	50391-50420	7	0.767
NZ_CP011013_5	5.9\|1512177\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512177-1512206	30	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	218885-218914	7	0.767
NZ_CP011013_5	5.9\|1512177\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512177-1512206	30	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	447818-447847	7	0.767
NZ_CP011013_5	5.17\|1512705\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512705-1512734	30	KY471269	Gordonia phage DinoDaryn, complete genome	8147-8176	7	0.767
NZ_CP011013_5	5.17\|1512705\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512705-1512734	30	KY471268	Gordonia phage Huffy, complete genome	8147-8176	7	0.767
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP013716	Staphylococcus equorum strain C2014 plasmid pC2014-2, complete sequence	7636-7665	7	0.767
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NC_017407	Borreliella burgdorferi JD1 plasmid JD1 lp28-4, complete sequence	14413-14442	7	0.767
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP031031	Runella sp. SP2 plasmid pSP2_1, complete sequence	14319-14348	7	0.767
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	KY018598	Salinicoccus sp. strain 408 plasmid pS408-2, complete sequence	2602-2631	7	0.767
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_MG205641	Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence	70164-70193	7	0.767
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_MG205642	Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence	70164-70193	7	0.767
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	MN692993	Marine virus AFVG_117M87, complete genome	1061-1090	7	0.767
NZ_CP011013_5	5.20\|1512903\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512903-1512932	30	MK448912	Streptococcus phage Javan340, complete genome	23855-23884	7	0.767
NZ_CP011013_5	5.21\|1512969\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1512969-1512998	30	MN693341	Marine virus AFVG_25M304, complete genome	23028-23057	7	0.767
NZ_CP011013_5	5.21\|1512969\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1512969-1512998	30	MN693607	Marine virus AFVG_25M305, complete genome	23415-23444	7	0.767
NZ_CP011013_5	5.21\|1512969\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1512969-1512998	30	MN694730	Marine virus AFVG_250M981, complete genome	27798-27827	7	0.767
NZ_CP011013_5	5.23\|1513101\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513101-1513130	30	MH616950	Microviridae sp. isolate ctdc50, complete genome	3246-3275	7	0.767
NZ_CP011013_5	5.23\|1513101\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513101-1513130	30	NC_049445	Acinetobacter phage AbTZA1, complete genome	23935-23964	7	0.767
NZ_CP011013_5	5.23\|1513101\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513101-1513130	30	NC_049494	Acinetobacter phage vB_AbaM_PhT2, complete genome	17755-17784	7	0.767
NZ_CP011013_5	5.30\|1513564\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513564-1513593	30	MN484601	Gordonia phage Sixama, complete genome	39538-39567	7	0.767
NZ_CP011013_5	5.31\|1513630\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513630-1513659	30	NZ_CP022993	Paraburkholderia aromaticivorans strain BN5 plasmid pBN3, complete sequence	96918-96947	7	0.767
NZ_CP011013_5	5.32\|1513696\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513696-1513725	30	NZ_LR135288	Enterococcus faecium isolate E7199 plasmid 2	141416-141445	7	0.767
NZ_CP011013_5	5.32\|1513696\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513696-1513725	30	NZ_CP014530	Enterococcus faecium strain E745 plasmid pl1, complete sequence	156743-156772	7	0.767
NZ_CP011013_5	5.32\|1513696\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513696-1513725	30	NC_017963	Enterococcus faecium DO plasmid 3, complete sequence	86343-86372	7	0.767
NZ_CP011013_5	5.32\|1513696\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513696-1513725	30	NZ_CP018129	Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence	61067-61096	7	0.767
NZ_CP011013_5	5.37\|1514026\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1514026-1514055	30	KP942676	Pectobacterium carotovorum plasmid Drgb1, complete sequence	62992-63021	7	0.767
NZ_CP011013_5	5.37\|1514026\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1514026-1514055	30	NZ_CP015497	Lactobacillus helveticus strain FAM8105 plasmid pFAM8105, complete sequence	45383-45412	7	0.767
NZ_CP011013_3	3.1\|1305320\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305320-1305351	32	NC_014819	Asticcacaulis excentricus CB 48 plasmid pASTEX02, complete sequence	98553-98584	8	0.75
NZ_CP011013_3	3.6\|1305625\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305625-1305656	32	MH617761	Phage sp. isolate ctdf4, complete genome	1795-1826	8	0.75
NZ_CP011013_3	3.6\|1305625\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305625-1305656	32	NC_048773	Aeromonas phage 4_4572, complete genome	17907-17938	8	0.75
NZ_CP011013_3	3.6\|1305625\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305625-1305656	32	NC_048775	Aeromonas phage LAh_8, complete genome	77979-78010	8	0.75
NZ_CP011013_3	3.6\|1305625\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305625-1305656	32	NC_048774	Aeromonas phage LAh_6, complete genome	39453-39484	8	0.75
NZ_CP011013_3	3.10\|1305869\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305869-1305900	32	NC_014841	Pantoea sp. At-9b plasmid pPAT9B04, complete sequence	181097-181128	8	0.75
NZ_CP011013_3	3.10\|1305869\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305869-1305900	32	MK250029	Prevotella phage Lak-C1, complete genome	53037-53068	8	0.75
NZ_CP011013_3	3.10\|1305869\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305869-1305900	32	MK250016	Prevotella phage Lak-A1, complete genome	76258-76289	8	0.75
NZ_CP011013_3	3.10\|1305869\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305869-1305900	32	MK250019	Prevotella phage Lak-A2, complete genome	541214-541245	8	0.75
NZ_CP011013_3	3.11\|1305930\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305930-1305961	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	1037442-1037473	8	0.75
NZ_CP011013_3	3.11\|1305930\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305930-1305961	32	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	514509-514540	8	0.75
NZ_CP011013_3	3.13\|1306052\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1306052-1306083	32	MH746817	Achromobacter phage vB_Ade_ART, complete genome	83423-83454	8	0.75
NZ_CP011013_3	3.24\|1305930\|33\|NZ_CP011013\|PILER-CR	1305930-1305962	33	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	622823-622855	8	0.758
NZ_CP011013_5	5.4\|1511848\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1511848-1511877	30	MK448711	Streptococcus phage Javan235, complete genome	18214-18243	8	0.733
NZ_CP011013_5	5.5\|1511914\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1511914-1511943	30	NZ_CP016494	Lactobacillus pentosus strain BGM48 plasmid pBGM48-3, complete sequence	10008-10037	8	0.733
NZ_CP011013_5	5.5\|1511914\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1511914-1511943	30	KT588072	Enterococcus phage IME-EFm5, complete genome	4930-4959	8	0.733
NZ_CP011013_5	5.7\|1512046\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512046-1512075	30	MK613345	Roseobacter phage CRP-3, complete genome	44074-44103	8	0.733
NZ_CP011013_5	5.8\|1512112\|29\|NZ_CP011013\|CRISPRCasFinder,CRT	1512112-1512140	29	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	1348874-1348902	8	0.724
NZ_CP011013_5	5.8\|1512112\|29\|NZ_CP011013\|CRISPRCasFinder,CRT	1512112-1512140	29	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1680876-1680904	8	0.724
NZ_CP011013_5	5.13\|1512441\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512441-1512470	30	NZ_CP009636	Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence	110471-110500	8	0.733
NZ_CP011013_5	5.13\|1512441\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512441-1512470	30	NZ_CP053962	Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence	174847-174876	8	0.733
NZ_CP011013_5	5.14\|1512507\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512507-1512536	30	NC_014304	Erwinia billingiae Eb661 plasmid pEB102, complete sequence	96674-96703	8	0.733
NZ_CP011013_5	5.14\|1512507\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512507-1512536	30	NZ_CP014126	Pantoea vagans strain FDAARGOS_160 plasmid unnamed1, complete sequence	8208-8237	8	0.733
NZ_CP011013_5	5.14\|1512507\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512507-1512536	30	NZ_CP022726	Erwinia persicina strain B64 plasmid pEP1, complete sequence	81600-81629	8	0.733
NZ_CP011013_5	5.14\|1512507\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512507-1512536	30	NZ_CP034473	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_4, complete sequence	41698-41727	8	0.733
NZ_CP011013_5	5.14\|1512507\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512507-1512536	30	NZ_CP034478	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_4, complete sequence	3007-3036	8	0.733
NZ_CP011013_5	5.14\|1512507\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512507-1512536	30	NC_019310	Erwinia amylovora plasmid pEM65, complete sequence	56315-56344	8	0.733
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP011009	Bacillus simplex strain SH-B26 plasmid pSHB26, complete sequence	116051-116080	8	0.733
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NC_011785	Borreliella burgdorferi ZS7 plasmid ZS7_lp28-4, complete sequence	12945-12974	8	0.733
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NC_018993	Borrelia burgdorferi 297 plasmid 297_lp28-4, complete sequence	11911-11940	8	0.733
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NC_017416	Borreliella burgdorferi N40 plasmid N40_lp28-4, complete sequence	13698-13727	8	0.733
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP031403	Borreliella burgdorferi strain MM1 plasmid plsm_lp28-4, complete sequence	11998-12027	8	0.733
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NC_001854	Borreliella burgdorferi B31 plasmid lp28-4, complete sequence	11928-11957	8	0.733
NZ_CP011013_5	5.23\|1513101\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513101-1513130	30	DQ320509	Lactobacillus phage KC5a, complete genome	27784-27813	8	0.733
NZ_CP011013_5	5.25\|1513234\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513234-1513263	30	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	365425-365454	8	0.733
NZ_CP011013_5	5.26\|1513300\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513300-1513329	30	MN034436	Leviviridae sp. isolate H4_Rhizo_44_scaffold_284 hypothetical protein (H4Rhizo44284_000001), hypothetical protein (H4Rhizo44284_000002), and RNA-dependent RNA polymerase (H4Rhizo44284_000003) genes, complete cds	2224-2253	8	0.733
NZ_CP011013_5	5.26\|1513300\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513300-1513329	30	NZ_CP042825	Rhizobium sp. WL3 plasmid unnamed2, complete sequence	581007-581036	8	0.733
NZ_CP011013_5	5.37\|1514026\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1514026-1514055	30	NC_021539	Listeria phage LP-030-2, complete genome	22430-22459	8	0.733
NZ_CP011013_5	5.37\|1514026\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1514026-1514055	30	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	321248-321277	8	0.733
NZ_CP011013_3	3.19\|1305625\|33\|NZ_CP011013\|PILER-CR	1305625-1305657	33	MH617761	Phage sp. isolate ctdf4, complete genome	1794-1826	9	0.727
NZ_CP011013_5	5.3\|1511782\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1511782-1511811	30	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1397133-1397162	9	0.7
NZ_CP011013_5	5.6\|1511980\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1511980-1512009	30	KM236247	Bacillus phage Pascal, complete genome	346-375	9	0.7
NZ_CP011013_5	5.7\|1512046\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512046-1512075	30	MN693289	Marine virus AFVG_25M43, complete genome	13448-13477	9	0.7
NZ_CP011013_5	5.9\|1512177\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512177-1512206	30	NZ_AP018257	Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome	199509-199538	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_KU882683	Staphylococcus lugdunensis strain Tlug33G-4 plasmid pT33G-1, complete sequence	40311-40340	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP022909	Staphylococcus aureus strain 545 plasmid pPS00078.1A.1, complete sequence	14055-14084	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_LR735438	Staphylococcus epidermidis strain none isolate Se_BPH0723 plasmid 2	39745-39774	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP027420	Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed1, complete sequence	27856-27885	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_LR735430	Staphylococcus epidermidis strain none isolate Se_BPH0704 plasmid 2	14899-14928	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP035293	Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed2, complete sequence	25977-26006	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	17706-17735	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP048645	Staphylococcus aureus strain SR153 plasmid pSR02, complete sequence	25924-25953	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP010403	Staphylococcus aureus subsp. aureus strain GR2 plasmid pGR2A, complete sequence	17005-17034	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP022907	Staphylococcus aureus strain 546 plasmid pPS00077.1A.1, complete sequence	14056-14085	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP051645	Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence	13197-13226	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	CP027490	Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed5	2470-2499	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_LN831037	Staphylococcus aureus strain NCTC13435 plasmid 2, complete sequence	6004-6033	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP038184	Staphylococcus aureus strain MJ015 plasmid unnamed1, complete sequence	19010-19039	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP014130	Staphylococcus epidermidis strain FDAARGOS_161 plasmid unnamed1, complete sequence	11790-11819	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NC_017350	Staphylococcus aureus subsp. aureus 11819-97 plasmid p11819-97, complete sequence	16273-16302	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP043303	Staphylococcus aureus strain 16445 plasmid unnamed1, complete sequence	40497-40526	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_KU882684	Staphylococcus lugdunensis strain Tlug8G-4 plasmid pT8G, complete sequence	5353-5382	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP031272	Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence	9506-9535	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NC_013328	Staphylococcus aureus plasmid pWBG753, complete sequence	1628-1657	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP023496	Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence	106183-106212	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP054008	Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3	13126-13155	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_CP033731	Staphylococcus hominis strain FDAARGOS_575 plasmid unnamed1, complete sequence	30154-30183	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NC_013378	Staphylococcus epidermidis plasmid SAP105B, complete sequence	1181-1210	9	0.7
NZ_CP011013_5	5.18\|1512771\|30\|NZ_CP011013\|CRISPRCasFinder,CRT	1512771-1512800	30	NZ_MH587574	Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence	34590-34619	9	0.7
NZ_CP011013_5	5.35\|1513894\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1513894-1513923	30	NC_014840	Pantoea sp. At-9b plasmid pPAT9B03, complete sequence	57101-57130	9	0.7
NZ_CP011013_5	5.37\|1514026\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1514026-1514055	30	NZ_CP043832	Bacillus sp. BS98 plasmid unnamed2	253129-253158	9	0.7
NZ_CP011013_5	5.37\|1514026\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1514026-1514055	30	NC_015417	Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence	145654-145683	9	0.7
NZ_CP011013_5	5.37\|1514026\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1514026-1514055	30	NZ_CP020434	Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence	96035-96064	9	0.7
NZ_CP011013_5	5.37\|1514026\|30\|NZ_CP011013\|CRISPRCasFinder,CRT,PILER-CR	1514026-1514055	30	NZ_CP007513	Bacillus bombysepticus plasmid pBb, complete genome	355807-355836	9	0.7
NZ_CP011013_1	1.1\|180339\|34\|NZ_CP011013\|CRISPRCasFinder	180339-180372	34	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	408268-408301	10	0.706
NZ_CP011013_3	3.3\|1305442\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305442-1305473	32	MK672798	Escherichia phage Skure, complete genome	43367-43398	10	0.688
NZ_CP011013_3	3.3\|1305442\|32\|NZ_CP011013\|CRISPRCasFinder,CRT	1305442-1305473	32	KP064094	Enterobacteria phage CAjan, complete genome	44157-44188	10	0.688

1. spacer 5.2|1511719|27|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP011014 (Lactobacillus mucosae LM1 plasmid pLM1, complete sequence) position: , mismatch: 2, identity: 0.926

tggtacgaatacgccaattcacccaag	CRISPR spacer
tggcacaaatacgccaattcacccaag	Protospacer
***.**.********************

2. spacer 5.6|1511980|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP011014 (Lactobacillus mucosae LM1 plasmid pLM1, complete sequence) position: , mismatch: 4, identity: 0.867

cgggttatgataggtttgtatagtttcttg	CRISPR spacer
cgggttatgataggtctgtatagtccgttg	Protospacer
***************.********.. ***

3. spacer 5.23|1513101|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NC_005893 (Lactobacillus phage phiAT3, complete genome) position: , mismatch: 4, identity: 0.867

ttgctgctgcaatcattgccgttggtgctg	CRISPR spacer
tggctggtgcaatcattgccgtgggtgcag	Protospacer
* **** *************** ***** *

4. spacer 5.23|1513101|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to AY605066 (Bacteriophage phi AT3, complete sequence) position: , mismatch: 4, identity: 0.867

ttgctgctgcaatcattgccgttggtgctg	CRISPR spacer
tggctggtgcaatcattgccgtgggtgcag	Protospacer
* **** *************** ***** *

5. spacer 5.2|1511719|27|NZ_CP011013|CRISPRCasFinder,CRT matches to MT773555 (Myoviridae sp. isolate BML_3 genomic sequence) position: , mismatch: 5, identity: 0.815

tggtacgaatacgccaattcacccaag	CRISPR spacer
tggaacgaatatgccaattcaccataa	Protospacer
*** *******.***********  *.

6. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 5, identity: 0.833

-aatactgttttatatattttatgatacttt	CRISPR spacer
ttatatt-ttttatttattttatgatatttt	Protospacer
  ***.* ****** ************.***

7. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP013199 (Spiroplasma citri strain R8-A2 plasmid pSCI15, complete sequence) position: , mismatch: 5, identity: 0.833

-aatactgttttatatattttatgatacttt	CRISPR spacer
ttatatt-ttttatttattttatgatatttt	Protospacer
  ***.* ****** ************.***

8. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP013198 (Spiroplasma citri strain R8-A2 plasmid pSCI26, complete sequence) position: , mismatch: 5, identity: 0.833

-aatactgttttatatattttatgatacttt	CRISPR spacer
ttatatt-ttttatttattttatgatatttt	Protospacer
  ***.* ****** ************.***

9. spacer 5.21|1512969|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021525 (Acetobacter ascendens strain SRCM101447 plasmid pAP1447-1) position: , mismatch: 5, identity: 0.833

gccattttcctcatcgttatctgacgcgtt-	CRISPR spacer
gccattttcgtcatctttatctg-ctcgctc	Protospacer
********* ***** ******* * **.*

10. spacer 5.32|1513696|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to MK504442 (Lactobacillus phage 3-SAC12, complete genome) position: , mismatch: 5, identity: 0.833

aagcccgg--aatcagcaattagaaatcttaa	CRISPR spacer
--actcggtaaatcagcaagtagaaatcttaa	Protospacer
  .*.***  ********* ************

11. spacer 2.3|183012|28|NZ_CP011013|CRISPRCasFinder matches to NZ_CP032534 (Bacillus megaterium NCT-2 plasmid pNCT2_6, complete sequence) position: , mismatch: 6, identity: 0.786

gtaaaattttctttactaccttgatagg	CRISPR spacer
ctaaaattctctttacttccttgagtcg	Protospacer
 *******.******** ******   *

12. spacer 2.3|183012|28|NZ_CP011013|CRISPRCasFinder matches to MN871452 (UNVERIFIED: Serratia phage KpZh_1, complete genome) position: , mismatch: 6, identity: 0.786

gtaaaattttctttactaccttgatagg	CRISPR spacer
ggaaaactttctttactaccttaatctc	Protospacer
* ****.***************.**

13. spacer 2.3|183012|28|NZ_CP011013|CRISPRCasFinder matches to MN871453 (UNVERIFIED: Serratia phage KpZh_LPS_45, complete genome) position: , mismatch: 6, identity: 0.786

gtaaaattttctttactaccttgatagg	CRISPR spacer
ggaaaactttctttactaccttaatctc	Protospacer
* ****.***************.**

14. spacer 2.3|183012|28|NZ_CP011013|CRISPRCasFinder matches to MN871448 (UNVERIFIED: Serratia phage KpSz_1, complete genome) position: , mismatch: 6, identity: 0.786

gtaaaattttctttactaccttgatagg	CRISPR spacer
ggaaaactttctttactaccttaatctc	Protospacer
* ****.***************.**

15. spacer 2.3|183012|28|NZ_CP011013|CRISPRCasFinder matches to KJ018211 (Shewanella sp. phage 1/40, complete genome) position: , mismatch: 6, identity: 0.786

gtaaaattttctttactaccttgatagg	CRISPR spacer
ccatcattgtcattactaccttgatagg	Protospacer
 .*  *** ** ****************

16. spacer 2.3|183012|28|NZ_CP011013|CRISPRCasFinder matches to KJ018209 (Shewanella sp. phage 1/4, complete genome) position: , mismatch: 6, identity: 0.786

gtaaaattttctttactaccttgatagg	CRISPR spacer
ccatcattgtcattactaccttgatagg	Protospacer
 .*  *** ** ****************

17. spacer 3.12|1305991|32|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_LR723673 (Rhizobium flavum strain YW14 plasmid 4) position: , mismatch: 6, identity: 0.812

cggcaacatgatcatcaatagccagatatgga	CRISPR spacer
cggctacatgatcatcaacagccaggcactga	Protospacer
**** *************.******..*. **

18. spacer 5.5|1511914|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP035178 (Lactobacillus plantarum strain SRCM103426 plasmid unnamed4) position: , mismatch: 6, identity: 0.8

cagct-tccttcaatgcgtctaattgtgtct	CRISPR spacer
-ggctgtttttcaatacgtctaattgtgtcg	Protospacer
 .*** *..******.**************

19. spacer 5.13|1512441|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_KX274135 (Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence) position: , mismatch: 6, identity: 0.8

tttacattttgtcaaaatttattgagctta	CRISPR spacer
ataatattttgtcaaaacgtattgagctaa	Protospacer
 * *.************. ********* *

20. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP023312 (Vibrio anguillarum strain VIB12 isolate Sea bass plasmid p292, complete sequence) position: , mismatch: 6, identity: 0.8

aatactgttttatatattttatgatacttt	CRISPR spacer
catactgttttatatatcttattcttcctt	Protospacer
 ****************.****  * *.**

21. spacer 5.22|1513035|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX893538 (Pseudomonas fluorescens strain PC20 plasmid pG20, complete sequence) position: , mismatch: 6, identity: 0.8

aaatgaaattgagaagctccaacctgtaca	CRISPR spacer
ggatgaaattgagaagctcgaatctgccca	Protospacer
..***************** **.***. **

22. spacer 5.22|1513035|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH061177 (Pseudomonas fluorescens strain P69 plasmid pG69, complete sequence) position: , mismatch: 6, identity: 0.8

aaatgaaattgagaagctccaacctgtaca	CRISPR spacer
ggatgaaattgagaagctcgaatctgccca	Protospacer
..***************** **.***. **

23. spacer 5.23|1513101|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NC_003276 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120alpha, complete sequence) position: , mismatch: 6, identity: 0.8

ttgctgctgcaatcattgccgttggtgctg	CRISPR spacer
tcgctgctgttatcattgccgttggtggaa	Protospacer
*.*******. ****************  .

24. spacer 5.23|1513101|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

ttgctgctgcaatcattgccgttggtgctg	CRISPR spacer
ttgctgctgcaatcaatgctgttgctccca	Protospacer
*************** ***.**** * *..

25. spacer 5.23|1513101|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NC_013085 (Synechococcus phage S-RSM4, complete genome) position: , mismatch: 6, identity: 0.8

ttgctgctgcaatcattgccgttggtgctg	CRISPR spacer
ctgctgcttcaatcattgacgttggggata	Protospacer
.******* ********* ****** * *.

26. spacer 5.23|1513101|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to FM207411 (Synechococcus phage S-RSM4 complete genome) position: , mismatch: 6, identity: 0.8

ttgctgctgcaatcattgccgttggtgctg	CRISPR spacer
ctgctgcttcaatcattgacgttggggata	Protospacer
.******* ********* ****** * *.

27. spacer 5.37|1514026|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 6, identity: 0.8

aaagttttattgtagtatataaacatacca	CRISPR spacer
tatgttttatggtagtatagaaacattcta	Protospacer
 * ******* ******** ****** *.*

28. spacer 2.2|182958|28|NZ_CP011013|CRISPRCasFinder matches to AP013406 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S46-C34) position: , mismatch: 7, identity: 0.75

ttgccaattttgtctgtacctactaagg	CRISPR spacer
acgggaattttatctgtacctactaact	Protospacer
 .*  ******.**************

29. spacer 2.3|183012|28|NZ_CP011013|CRISPRCasFinder matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 7, identity: 0.75

gtaaaattttctttactaccttgatagg	CRISPR spacer
agtaaatttttcttactaccttgataat	Protospacer
.  *******..**************.

30. spacer 2.3|183012|28|NZ_CP011013|CRISPRCasFinder matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 7, identity: 0.75

gtaaaattttctttactaccttgatagg	CRISPR spacer
agtaaatttttcttactaccttgataat	Protospacer
.  *******..**************.

31. spacer 3.11|1305930|32|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 7, identity: 0.781

ccgtctatgtatgacgaaaagctggctatttt	CRISPR spacer
gaggcgatgaatgacgaaaagctggccattct	Protospacer
  * * *** ****************.***.*

32. spacer 3.25|1305991|33|NZ_CP011013|PILER-CR matches to NZ_LR723673 (Rhizobium flavum strain YW14 plasmid 4) position: , mismatch: 7, identity: 0.788

cggcaacatgatcatcaatagccagatatggaa	CRISPR spacer
cggctacatgatcatcaacagccaggcactgat	Protospacer
**** *************.******..*. **

33. spacer 5.1|1511653|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP026684 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence) position: , mismatch: 7, identity: 0.767

aataactcactttggagcggtgatccagtt	CRISPR spacer
aataactcaccttggagcgatgagcaatgg	Protospacer
**********.********.*** * *

34. spacer 5.5|1511914|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP035189 (Bacillus licheniformis strain SRCM103914 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cagcttccttcaatgcgtctaattgtgtct	CRISPR spacer
cagcttccctcaatgtgtctaatactaggt	Protospacer
********.******.*******  *.  *

35. spacer 5.5|1511914|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP021678 (Bacillus licheniformis strain SRCM100027 plasmid pBL027-1 sequence) position: , mismatch: 7, identity: 0.767

cagcttccttcaatgcgtctaattgtgtct	CRISPR spacer
cagcttccctcaatgtgtctaatactaggt	Protospacer
********.******.*******  *.  *

36. spacer 5.7|1512046|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP028345 (Vibrio parahaemolyticus isolate R13 plasmid pVpR13_55Kb, complete sequence) position: , mismatch: 7, identity: 0.767

agcaaagttagctaaaacagctagaaagtg	CRISPR spacer
agcaaaattagctaaaaaagctaattactc	Protospacer
******.********** *****.  * *

37. spacer 5.7|1512046|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP034303 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-4, complete sequence) position: , mismatch: 7, identity: 0.767

agcaaagttagctaaaacagctagaaagtg	CRISPR spacer
agcaaaattagctaaaaaagctaattactc	Protospacer
******.********** *****.  * *

38. spacer 5.7|1512046|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP028144 (Vibrio parahaemolyticus strain R14 plasmid pVpR14_56Kb, complete sequence) position: , mismatch: 7, identity: 0.767

agcaaagttagctaaaacagctagaaagtg	CRISPR spacer
agcaaaattagctaaaaaagctaattactc	Protospacer
******.********** *****.  * *

39. spacer 5.8|1512112|29|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 7, identity: 0.759

gaattaagaggtgaaaaaatggaccttac	CRISPR spacer
agaggaagaggtgaaaaaacgcaccttag	Protospacer
..*  **************.* ******

40. spacer 5.8|1512112|29|NZ_CP011013|CRISPRCasFinder,CRT matches to MN552143 (Lactococcus phage P1046, complete genome) position: , mismatch: 7, identity: 0.759

gaattaagaggtgaaaaaatggaccttac	CRISPR spacer
atattaagaggtgataaaatagaccctca	Protospacer
. ************ *****.****.*

41. spacer 5.8|1512112|29|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_010576 (Lactococcus phage 1706, complete genome) position: , mismatch: 7, identity: 0.759

gaattaagaggtgaaaaaatggaccttac	CRISPR spacer
atattaagaggtgataaaatagaccctca	Protospacer
. ************ *****.****.*

42. spacer 5.8|1512112|29|NZ_CP011013|CRISPRCasFinder,CRT matches to MK779875 (Lactococcus phage CHPC971, complete genome) position: , mismatch: 7, identity: 0.759

gaattaagaggtgaaaaaatggaccttac	CRISPR spacer
atattaagaggtgataaaatagaccctca	Protospacer
. ************ *****.****.*

43. spacer 5.9|1512177|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 7, identity: 0.767

aattgaaggagcagattttatgaatagccg	CRISPR spacer
aatttaaggagcacattttatgaaaactac	Protospacer
**** ******** ********** * .

44. spacer 5.9|1512177|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aattgaaggagcagattttatgaatagccg	CRISPR spacer
aatttaaggagcacattttatgaaaactac	Protospacer
**** ******** ********** * .

45. spacer 5.9|1512177|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

aattgaaggagcagattttatgaatagccg	CRISPR spacer
aatttaaggagcacattttatgaaaactac	Protospacer
**** ******** ********** * .

46. spacer 5.9|1512177|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.767

aattgaaggagcagattttatgaatagccg	CRISPR spacer
aatttaaggagcacattttatgaaaactac	Protospacer
**** ******** ********** * .

47. spacer 5.9|1512177|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 7, identity: 0.767

aattgaaggagcagattttatgaatagccg	CRISPR spacer
aatttaaggagcacattttatgaacactac	Protospacer
**** ******** **********.* .

48. spacer 5.17|1512705|30|NZ_CP011013|CRISPRCasFinder,CRT matches to KY471269 (Gordonia phage DinoDaryn, complete genome) position: , mismatch: 7, identity: 0.767

aaccgtaataagcggttgctgtgcaagctc	CRISPR spacer
gagatcaatcagcggttgctgtacaagctc	Protospacer
.*   .*** ************.*******

49. spacer 5.17|1512705|30|NZ_CP011013|CRISPRCasFinder,CRT matches to KY471268 (Gordonia phage Huffy, complete genome) position: , mismatch: 7, identity: 0.767

aaccgtaataagcggttgctgtgcaagctc	CRISPR spacer
gagatcaatcagcggttgctgtacaagctc	Protospacer
.*   .*** ************.*******

50. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP013716 (Staphylococcus equorum strain C2014 plasmid pC2014-2, complete sequence) position: , mismatch: 7, identity: 0.767

aatactgttttatatattttatgatacttt	CRISPR spacer
ttcgttgttttatatattttttgatacttg	Protospacer
  ...*************** ********

51. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_017407 (Borreliella burgdorferi JD1 plasmid JD1 lp28-4, complete sequence) position: , mismatch: 7, identity: 0.767

aatactgttttatatattttatgatacttt	CRISPR spacer
tctctatttttatagattttatgatacttt	Protospacer
  * .  ******* ***************

52. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP031031 (Runella sp. SP2 plasmid pSP2_1, complete sequence) position: , mismatch: 7, identity: 0.767

aatactgttttatatattttatgatacttt	CRISPR spacer
tacaaatttgtatatattttatgatatttt	Protospacer
 *.*   ** ****************.***

53. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to KY018598 (Salinicoccus sp. strain 408 plasmid pS408-2, complete sequence) position: , mismatch: 7, identity: 0.767

aatactgttttatatattttatgatacttt	CRISPR spacer
agttattttttatatattttttgatactag	Protospacer
*.*  * ************* *******

54. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_MG205641 (Paeniclostridium sordellii strain 7508-A plasmid pCS1-7, complete sequence) position: , mismatch: 7, identity: 0.767

aatactgttttatatattttatgatacttt	CRISPR spacer
ttttgttttttatattttttatgaaacttt	Protospacer
  *  * ******** ******** *****

55. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_MG205642 (Paeniclostridium sordellii strain 7543-A plasmid pCS1-6, complete sequence) position: , mismatch: 7, identity: 0.767

aatactgttttatatattttatgatacttt	CRISPR spacer
ttttgttttttatattttttatgaaacttt	Protospacer
  *  * ******** ******** *****

56. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to MN692993 (Marine virus AFVG_117M87, complete genome) position: , mismatch: 7, identity: 0.767

aatactgttttatatattttatgatacttt	CRISPR spacer
ataactgttttggatattttatgatattag	Protospacer
*  ********. *************.*

57. spacer 5.20|1512903|30|NZ_CP011013|CRISPRCasFinder,CRT matches to MK448912 (Streptococcus phage Javan340, complete genome) position: , mismatch: 7, identity: 0.767

aatcatcaacgctcatgccgtatttcttaa	CRISPR spacer
aatcatcaacgctcattccgtacgcttcta	Protospacer
**************** *****. ..*. *

58. spacer 5.21|1512969|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to MN693341 (Marine virus AFVG_25M304, complete genome) position: , mismatch: 7, identity: 0.767

gccattttcctcatcgttatctgacgcgtt	CRISPR spacer
atcatttttctcagcgttatctgacgtatc	Protospacer
..******.**** ************..*.

59. spacer 5.21|1512969|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to MN693607 (Marine virus AFVG_25M305, complete genome) position: , mismatch: 7, identity: 0.767

gccattttcctcatcgttatctgacgcgtt	CRISPR spacer
atcatttttctcagcgttatctgacgtatc	Protospacer
..******.**** ************..*.

60. spacer 5.21|1512969|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to MN694730 (Marine virus AFVG_250M981, complete genome) position: , mismatch: 7, identity: 0.767

gccattttcctcatcgttatctgacgcgtt	CRISPR spacer
ggttttttcttcatcgttatctgaagcaat	Protospacer
* . *****.************** **. *

61. spacer 5.23|1513101|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to MH616950 (Microviridae sp. isolate ctdc50, complete genome) position: , mismatch: 7, identity: 0.767

ttgctgctgcaatcattgccgttggtgctg	CRISPR spacer
atgctcctgcaatcattgctgttgatttag	Protospacer
 **** *************.****.* . *

62. spacer 5.23|1513101|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NC_049445 (Acinetobacter phage AbTZA1, complete genome) position: , mismatch: 7, identity: 0.767

ttgctgctgcaatcattgccgttggtgctg	CRISPR spacer
ttgctgctgcaatcatggcagtttcttcac	Protospacer
**************** ** ***  * *

63. spacer 5.23|1513101|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NC_049494 (Acinetobacter phage vB_AbaM_PhT2, complete genome) position: , mismatch: 7, identity: 0.767

ttgctgctgcaatcattgccgttggtgctg	CRISPR spacer
ttgctgctgcaatcatggcagtttcttcac	Protospacer
**************** ** ***  * *

64. spacer 5.30|1513564|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to MN484601 (Gordonia phage Sixama, complete genome) position: , mismatch: 7, identity: 0.767

cagtcgagccgactttaagctggctaagca	CRISPR spacer
cagtcgagccgtctttgagctggctcttgt	Protospacer
*********** ****.********

65. spacer 5.31|1513630|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022993 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN3, complete sequence) position: , mismatch: 7, identity: 0.767

tcggcttgatccagccgtacaaaaatcaat	CRISPR spacer
tctccttggtccagccgtacaaaaatacgg	Protospacer
**  ****.*****************  .

66. spacer 5.32|1513696|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR135288 (Enterococcus faecium isolate E7199 plasmid 2) position: , mismatch: 7, identity: 0.767

aagcccggaatcagcaattagaaatcttaa	CRISPR spacer
agcagatgaatcagctattagaaatcttaa	Protospacer
*.     ******** **************

67. spacer 5.32|1513696|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014530 (Enterococcus faecium strain E745 plasmid pl1, complete sequence) position: , mismatch: 7, identity: 0.767

aagcccggaatcagcaattagaaatcttaa	CRISPR spacer
agcagatgaatcagctattagaaatcttaa	Protospacer
*.     ******** **************

68. spacer 5.32|1513696|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NC_017963 (Enterococcus faecium DO plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

aagcccggaatcagcaattagaaatcttaa	CRISPR spacer
agcagatgaatcagctattagaaatcttaa	Protospacer
*.     ******** **************

69. spacer 5.32|1513696|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018129 (Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aagcccggaatcagcaattagaaatcttaa	CRISPR spacer
agcagatgaatcagctattagaaatcttaa	Protospacer
*.     ******** **************

70. spacer 5.37|1514026|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to KP942676 (Pectobacterium carotovorum plasmid Drgb1, complete sequence) position: , mismatch: 7, identity: 0.767

aaagttttattgtagtatataaacatacca	CRISPR spacer
actggtgaattggagtatataaacataccc	Protospacer
*  * *  **** ****************

71. spacer 5.37|1514026|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015497 (Lactobacillus helveticus strain FAM8105 plasmid pFAM8105, complete sequence) position: , mismatch: 7, identity: 0.767

aaagttttattgtagtatataaacatacca	CRISPR spacer
atacccctattgtagtatataagcatacta	Protospacer
* * ...***************.*****.*

72. spacer 3.1|1305320|32|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_014819 (Asticcacaulis excentricus CB 48 plasmid pASTEX02, complete sequence) position: , mismatch: 8, identity: 0.75

aacaacaaaaacgaaactgacgcc-aatgctac	CRISPR spacer
gacaacaaaaacgaaactatcgccggaagccg-	Protospacer
.*****************. **** .* **..

73. spacer 3.6|1305625|32|NZ_CP011013|CRISPRCasFinder,CRT matches to MH617761 (Phage sp. isolate ctdf4, complete genome) position: , mismatch: 8, identity: 0.75

gtcgtcaacaatttctttcttgtgctcctgga	CRISPR spacer
ttgattgccaagttctttcttttgctcctgga	Protospacer
 * .*.. *** ********* **********

74. spacer 3.6|1305625|32|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_048773 (Aeromonas phage 4_4572, complete genome) position: , mismatch: 8, identity: 0.75

gtcgtcaacaatttctttcttgtgctcctgga----	CRISPR spacer
ttggtctacaatttctttcttgtact----gagttt	Protospacer
 * *** ****************.**    **

75. spacer 3.6|1305625|32|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_048775 (Aeromonas phage LAh_8, complete genome) position: , mismatch: 8, identity: 0.75

gtcgtcaacaatttctttcttgtgctcctgga----	CRISPR spacer
ttggtctacaatttctttcttgtact----gagttt	Protospacer
 * *** ****************.**    **

76. spacer 3.6|1305625|32|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_048774 (Aeromonas phage LAh_6, complete genome) position: , mismatch: 8, identity: 0.75

gtcgtcaacaatttctttcttgtgctcctgga----	CRISPR spacer
ttggtctacaatttctttcttgtact----gagttt	Protospacer
 * *** ****************.**    **

77. spacer 3.10|1305869|32|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 8, identity: 0.75

accttcagcgatttgctgttgtgatacaccat	CRISPR spacer
acagaaagcgatttgatgttgtgttacacagt	Protospacer
**    ********* ******* ***** .*

78. spacer 3.10|1305869|32|NZ_CP011013|CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 8, identity: 0.75

accttcagcgatttgctgttgtgatacaccat	CRISPR spacer
aatttcagccatttgctcttgtgataacatat	Protospacer
* .****** ******* ********   .**

79. spacer 3.10|1305869|32|NZ_CP011013|CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 8, identity: 0.75

accttcagcgatttgctgttgtgatacaccat	CRISPR spacer
aatttcagccatttgctcttgtgataacatat	Protospacer
* .****** ******* ********   .**

80. spacer 3.10|1305869|32|NZ_CP011013|CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 8, identity: 0.75

accttcagcgatttgctgttgtgatacaccat	CRISPR spacer
aatttcagccatttgctcttgtgataacatat	Protospacer
* .****** ******* ********   .**

81. spacer 3.11|1305930|32|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtctatgtatgacgaaaagctggctatttt	CRISPR spacer
gaggcaatgaacgacgaaaagctggctatcct	Protospacer
  * * *** *.*****************..*

82. spacer 3.11|1305930|32|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtctatgtatgacgaaaagctggctatttt	CRISPR spacer
gaggcaatgaacgacgaaaagctggctatcct	Protospacer
  * * *** *.*****************..*

83. spacer 3.13|1306052|32|NZ_CP011013|CRISPRCasFinder,CRT matches to MH746817 (Achromobacter phage vB_Ade_ART, complete genome) position: , mismatch: 8, identity: 0.75

cgaacaccgatcaggtttcgcca----gcgccaaaa	CRISPR spacer
cgatcaccgatcaggttgcgccacactgtggc----	Protospacer
*** ************* *****    *.* *

84. spacer 3.24|1305930|33|NZ_CP011013|PILER-CR matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 8, identity: 0.758

ccgtctatgtatgacgaaaagctggctatttta	CRISPR spacer
gaggcgatgaatgacgaaaagctggccattctg	Protospacer
  * * *** ****************.***.*.

85. spacer 5.4|1511848|30|NZ_CP011013|CRISPRCasFinder,CRT matches to MK448711 (Streptococcus phage Javan235, complete genome) position: , mismatch: 8, identity: 0.733

caatgattatggaactgctagctatttcga	CRISPR spacer
caatgtttatggaactgctagcgccatatg	Protospacer
***** ****************  . *  .

86. spacer 5.5|1511914|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP016494 (Lactobacillus pentosus strain BGM48 plasmid pBGM48-3, complete sequence) position: , mismatch: 8, identity: 0.733

cagcttccttcaatgcgtctaattgtgtct	CRISPR spacer
aactcgtctttaatacgtctaattgtgtct	Protospacer
 * .. .***.***.***************

87. spacer 5.5|1511914|30|NZ_CP011013|CRISPRCasFinder,CRT matches to KT588072 (Enterococcus phage IME-EFm5, complete genome) position: , mismatch: 8, identity: 0.733

cagcttccttcaatgcgtctaattgtgtct	CRISPR spacer
gtgcttcctccaattcgtctaattgatctt	Protospacer
  *******.**** **********  ..*

88. spacer 5.7|1512046|30|NZ_CP011013|CRISPRCasFinder,CRT matches to MK613345 (Roseobacter phage CRP-3, complete genome) position: , mismatch: 8, identity: 0.733

agcaaagttagctaaaacagctagaaagtg	CRISPR spacer
gaagacattagctaaaacagctaaaaagcg	Protospacer
.. .* .****************.****.*

89. spacer 5.8|1512112|29|NZ_CP011013|CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.724

gaattaagaggtgaaaaaatggaccttac	CRISPR spacer
tctgcaagaggtgaaaaaatggagattag	Protospacer
    .******************  ***

90. spacer 5.8|1512112|29|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.724

gaattaagaggtgaaaaaatggaccttac	CRISPR spacer
cccacaagaagtgaaagaatggaccttat	Protospacer
    .****.******.***********.

91. spacer 5.13|1512441|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 8, identity: 0.733

tttacattttgtcaaaatttattgagctta	CRISPR spacer
taacaattttgtcaaaatttattccgctat	Protospacer
*    ******************  ***

92. spacer 5.13|1512441|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tttacattttgtcaaaatttattgagctta	CRISPR spacer
taacaattttgtcaaaatttattccgctat	Protospacer
*    ******************  ***

93. spacer 5.14|1512507|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_014304 (Erwinia billingiae Eb661 plasmid pEB102, complete sequence) position: , mismatch: 8, identity: 0.733

tttgacccgcccaacgttctgctgggcacg	CRISPR spacer
cagaaaccgcccaaggttctgctgggccgg	Protospacer
.  .* ******** ************  *

94. spacer 5.14|1512507|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP014126 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tttgacccgcccaacgttctgctgggcacg	CRISPR spacer
cagaaaccgcccaaggttctgctgggccgg	Protospacer
.  .* ******** ************  *

95. spacer 5.14|1512507|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP022726 (Erwinia persicina strain B64 plasmid pEP1, complete sequence) position: , mismatch: 8, identity: 0.733

tttgacccgcccaacgttctgctgggcacg	CRISPR spacer
cagaaaccgcccaaggttctgctgggccgg	Protospacer
.  .* ******** ************  *

96. spacer 5.14|1512507|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP034473 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_4, complete sequence) position: , mismatch: 8, identity: 0.733

tttgacccgcccaacgttctgctgggcacg	CRISPR spacer
cagaaaccgcccaaggttctgctgggccgg	Protospacer
.  .* ******** ************  *

97. spacer 5.14|1512507|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP034478 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_4, complete sequence) position: , mismatch: 8, identity: 0.733

tttgacccgcccaacgttctgctgggcacg	CRISPR spacer
cagaaaccgcccaaggttctgctgggccgg	Protospacer
.  .* ******** ************  *

98. spacer 5.14|1512507|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_019310 (Erwinia amylovora plasmid pEM65, complete sequence) position: , mismatch: 8, identity: 0.733

tttgacccgcccaacgttctgctgggcacg	CRISPR spacer
cagaaaccgcccaaggttctgctgggccgg	Protospacer
.  .* ******** ************  *

99. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP011009 (Bacillus simplex strain SH-B26 plasmid pSHB26, complete sequence) position: , mismatch: 8, identity: 0.733

aatactgttttatatattttatgatacttt	CRISPR spacer
tcaactattttataaattttatgatattgc	Protospacer
   ***.******* ***********.* .

100. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_011785 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-4, complete sequence) position: , mismatch: 8, identity: 0.733

aatactgttttatatattttatgatacttt	CRISPR spacer
tctctatttttatagattttatgatgcttt	Protospacer
  * .  ******* **********.****

101. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_018993 (Borrelia burgdorferi 297 plasmid 297_lp28-4, complete sequence) position: , mismatch: 8, identity: 0.733

aatactgttttatatattttatgatacttt	CRISPR spacer
tctctatttttatagattttatgatgcttt	Protospacer
  * .  ******* **********.****

102. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_017416 (Borreliella burgdorferi N40 plasmid N40_lp28-4, complete sequence) position: , mismatch: 8, identity: 0.733

aatactgttttatatattttatgatacttt	CRISPR spacer
tctctatttttatagattttatgatgcttt	Protospacer
  * .  ******* **********.****

103. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP031403 (Borreliella burgdorferi strain MM1 plasmid plsm_lp28-4, complete sequence) position: , mismatch: 8, identity: 0.733

aatactgttttatatattttatgatacttt	CRISPR spacer
tctctatttttatagattttatgatgcttt	Protospacer
  * .  ******* **********.****

104. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_001854 (Borreliella burgdorferi B31 plasmid lp28-4, complete sequence) position: , mismatch: 8, identity: 0.733

aatactgttttatatattttatgatacttt	CRISPR spacer
tctctatttttatagattttatgatgcttt	Protospacer
  * .  ******* **********.****

105. spacer 5.23|1513101|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to DQ320509 (Lactobacillus phage KC5a, complete genome) position: , mismatch: 8, identity: 0.733

ttgctgctgcaatcattgccgttggtgctg	CRISPR spacer
caactgccgcaatcattgccattggtccaa	Protospacer
. .****.************.***** * .

106. spacer 5.25|1513234|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 8, identity: 0.733

accggcgcaagattttcagaaattattgct	CRISPR spacer
gctaaaacaagatttttagaaattatagct	Protospacer
.*... .*********.********* ***

107. spacer 5.26|1513300|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to MN034436 (Leviviridae sp. isolate H4_Rhizo_44_scaffold_284 hypothetical protein (H4Rhizo44284_000001), hypothetical protein (H4Rhizo44284_000002), and RNA-dependent RNA polymerase (H4Rhizo44284_000003) genes, complete cds) position: , mismatch: 8, identity: 0.733

tgcgattttcaagggccttcttgtttttaa	CRISPR spacer
gacgcttttcaagggccttcttgtcagcac	Protospacer
 .** *******************.  .*

108. spacer 5.26|1513300|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042825 (Rhizobium sp. WL3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tgcgattttcaagggccttcttgtttttaa	CRISPR spacer
tgcggttttcaagggcattcttgcggaaga	Protospacer
****.*********** ******.    .*

109. spacer 5.37|1514026|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 8, identity: 0.733

aaagttttattgtagtatataaacatacca	CRISPR spacer
taaagattattgtagaatataaacatagtt	Protospacer
 **.  ********* *********** .

110. spacer 5.37|1514026|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 8, identity: 0.733

aaagttttattgtagtatataaacatacca	CRISPR spacer
ttaattttatagtagtatataaagataatg	Protospacer
  *.****** ************ *** ..

111. spacer 3.19|1305625|33|NZ_CP011013|PILER-CR matches to MH617761 (Phage sp. isolate ctdf4, complete genome) position: , mismatch: 9, identity: 0.727

gtcgtcaacaatttctttcttgtgctcctggaa	CRISPR spacer
ttgattgccaagttctttcttttgctcctggag	Protospacer
 * .*.. *** ********* **********.

112. spacer 5.3|1511782|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

caaacagattgagcagactactaccgttga	CRISPR spacer
agtcgaggttgagcagactactaccatttc	Protospacer
 .   **.*****************.**

113. spacer 5.6|1511980|30|NZ_CP011013|CRISPRCasFinder,CRT matches to KM236247 (Bacillus phage Pascal, complete genome) position: , mismatch: 9, identity: 0.7

cgggttatgataggtttgtatagtttcttg	CRISPR spacer
gactgtatgataggtttggataggttctct	Protospacer
 .   ************* **** ****.

114. spacer 5.7|1512046|30|NZ_CP011013|CRISPRCasFinder,CRT matches to MN693289 (Marine virus AFVG_25M43, complete genome) position: , mismatch: 9, identity: 0.7

agcaaagttagctaaaacagctagaaagtg	CRISPR spacer
gaaaaagttagctaaaaaagttagaagagc	Protospacer
.. ************** **.*****..

115. spacer 5.9|1512177|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_AP018257 (Calothrix sp. NIES-4071 plasmid plasmid2 DNA, complete genome) position: , mismatch: 9, identity: 0.7

aattgaaggagcagattttatgaatagccg	CRISPR spacer
ggatgaaggagcagattacatgaataatgt	Protospacer
.. ************** .*******..

116. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_KU882683 (Staphylococcus lugdunensis strain Tlug33G-4 plasmid pT33G-1, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

117. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP022909 (Staphylococcus aureus strain 545 plasmid pPS00078.1A.1, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

118. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_LR735438 (Staphylococcus epidermidis strain none isolate Se_BPH0723 plasmid 2) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

119. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP027420 (Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ttcgtttatttatatattttttgatacttg	Protospacer
  ...*  ************ ********

120. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_LR735430 (Staphylococcus epidermidis strain none isolate Se_BPH0704 plasmid 2) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

121. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP035293 (Staphylococcus haemolyticus strain ATCC 29970 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

122. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

123. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP048645 (Staphylococcus aureus strain SR153 plasmid pSR02, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

124. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP010403 (Staphylococcus aureus subsp. aureus strain GR2 plasmid pGR2A, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

125. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP022907 (Staphylococcus aureus strain 546 plasmid pPS00077.1A.1, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

126. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP051645 (Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

127. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to CP027490 (Staphylococcus aureus strain ST2594 isolate 004 plasmid unnamed5) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

128. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_LN831037 (Staphylococcus aureus strain NCTC13435 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

129. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP038184 (Staphylococcus aureus strain MJ015 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

130. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP014130 (Staphylococcus epidermidis strain FDAARGOS_161 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

131. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_017350 (Staphylococcus aureus subsp. aureus 11819-97 plasmid p11819-97, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

132. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP043303 (Staphylococcus aureus strain 16445 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

133. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_KU882684 (Staphylococcus lugdunensis strain Tlug8G-4 plasmid pT8G, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

134. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP031272 (Staphylococcus caprae strain 26D plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

135. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_013328 (Staphylococcus aureus plasmid pWBG753, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

136. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP023496 (Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

137. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP054008 (Staphylococcus hominis strain FDAARGOS_762 plasmid unnamed3) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

138. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_CP033731 (Staphylococcus hominis strain FDAARGOS_575 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

139. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NC_013378 (Staphylococcus epidermidis plasmid SAP105B, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

140. spacer 5.18|1512771|30|NZ_CP011013|CRISPRCasFinder,CRT matches to NZ_MH587574 (Staphylococcus aureus strain WBG10514 plasmid pWBG731, complete sequence) position: , mismatch: 9, identity: 0.7

aatactgttttatatattttatgatacttt	CRISPR spacer
ctcgtttgtttatatattttttgatacttg	Protospacer
  ...*  ************ ********

141. spacer 5.35|1513894|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NC_014840 (Pantoea sp. At-9b plasmid pPAT9B03, complete sequence) position: , mismatch: 9, identity: 0.7

cttgatgacgcgccgaactttgaatcaagt	CRISPR spacer
cttgatgccgcgccgaacttttccccgttg	Protospacer
******* *************   .*.

142. spacer 5.37|1514026|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043832 (Bacillus sp. BS98 plasmid unnamed2) position: , mismatch: 9, identity: 0.7

aaagttttattgtagtatataaacatacca	CRISPR spacer
ccttatttattgtagaatataaacatttcg	Protospacer
     ********** ********** .*.

143. spacer 5.37|1514026|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NC_015417 (Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence) position: , mismatch: 9, identity: 0.7

aaagttttattgtagtatataaacatacca	CRISPR spacer
tataaattattgtagtatataaatataatg	Protospacer
 * .  *****************.*** ..

144. spacer 5.37|1514026|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020434 (Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.7

aaagttttattgtagtatataaacatacca	CRISPR spacer
ccttatttattgtagaatataaacatttcg	Protospacer
     ********** ********** .*.

145. spacer 5.37|1514026|30|NZ_CP011013|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 9, identity: 0.7

aaagttttattgtagtatataaacatacca	CRISPR spacer
ccttatttattgtagaatataaacatttcg	Protospacer
     ********** ********** .*.

146. spacer 1.1|180339|34|NZ_CP011013|CRISPRCasFinder matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

tcccatagtcagaaaacatatactttgaaagtat	CRISPR spacer
ttgagtagtcagatatcatatactttgaaaccgg	Protospacer
*.  .******** * ************** ..

147. spacer 3.3|1305442|32|NZ_CP011013|CRISPRCasFinder,CRT matches to MK672798 (Escherichia phage Skure, complete genome) position: , mismatch: 10, identity: 0.688

tgcgggcggtgttaatggctttgctttttacc	CRISPR spacer
tgagcgcggtgttaatggctttgggtccactg	Protospacer
** * ******************  *..  .

148. spacer 3.3|1305442|32|NZ_CP011013|CRISPRCasFinder,CRT matches to KP064094 (Enterobacteria phage CAjan, complete genome) position: , mismatch: 10, identity: 0.688

tgcgggcggtgttaatggctttgctttttacc	CRISPR spacer
tgagcgcggtgttaatggctttgggtccactg	Protospacer
** * ******************  *..  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

146876 : 198209

unidentified_phage(30.77%)

integrase,transposase

attL 146844:146903|attR 198183:199240

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
146844:146903	attL	NA	NA	NA	NA
WP_006500519.1\|146876_147800_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	2.8e-31	31.0
WP_006500566.1\|148025_148667_-	HAD family hydrolase	NA	NA	NA	NA
WP_006500565.1\|148802_149381_-	NADPH-dependent F420 reductase	NA	NA	NA	NA
WP_006500564.1\|149534_149921_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_033934783.1\|149963_150875_-	proline-specific peptidase family protein	NA	NA	NA	NA
WP_006500562.1\|151000_153409_-	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA
WP_045025293.1\|153569_153935_-	hypothetical protein	NA	NA	NA	NA
WP_006500560.1\|154205_155000_+	acetoin reductase	Q06VL0	Trichoplusia_ni_ascovirus	1.6e-11	28.0
WP_006500559.1\|155114_155687_-	hypothetical protein	NA	NA	NA	NA
WP_006500558.1\|156015_157122_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	5.9e-36	42.5
WP_006500557.1\|157118_157934_+	ABC transporter permease	Q6GZ02	Mycoplasma_phage	2.0e-09	22.1
WP_006500556.1\|157930_158749_+	ABC transporter permease	NA	NA	NA	NA
WP_006500555.1\|158745_159819_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_006500554.1\|159865_161257_-	amino acid permease	NA	NA	NA	NA
WP_006500553.1\|161455_161872_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_033934782.1\|161871_162432_+	guanylate kinase	A0A240FAU9	Liberibacter_phage	1.9e-06	30.9
WP_006500551.1\|162478_162916_+	transcriptional repressor	NA	NA	NA	NA
WP_033934728.1\|163005_163449_+	hypothetical protein	NA	NA	NA	NA
WP_033934727.1\|163463_164285_+	hypothetical protein	NA	NA	NA	NA
WP_006500548.1\|164364_165030_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_006500547.1\|165118_166162_-	galactose mutarotase	NA	NA	NA	NA
WP_034540666.1\|166378_166945_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_039946003.1\|166994_168275_-	GTPase HflX	NA	NA	NA	NA
WP_039946002.1\|168305_168953_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_039946035.1\|169032_169680_-	VTT domain-containing protein	NA	NA	NA	NA
WP_006500542.1\|169857_172161_+	AAA family ATPase	NA	NA	NA	NA
WP_039946001.1\|172346_174440_+	LTA synthase family protein	W6LM83	Streptococcus_phage	1.6e-146	43.9
WP_039946000.1\|174739_175663_+	type I pantothenate kinase	NA	NA	NA	NA
WP_006500538.1\|176352_177588_+\|transposase	transposase	A0A0P0IJS6	Lactobacillus_phage	3.1e-118	54.9
WP_006500536.1\|178230_179784_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.1e-19	29.1
WP_158423321.1\|180653_181106_-	hypothetical protein	NA	NA	NA	NA
WP_006500535.1\|181172_181643_-	hypothetical protein	NA	NA	NA	NA
WP_052669123.1\|182047_183385_-	helix-turn-helix domain-containing protein	A0A0H4TJ49	Erysipelothrix_phage	3.8e-13	38.6
WP_039945996.1\|183444_183780_-	hypothetical protein	NA	NA	NA	NA
WP_006500532.1\|183791_184115_-	hypothetical protein	NA	NA	NA	NA
WP_006500531.1\|184107_184326_-	hypothetical protein	NA	NA	NA	NA
WP_039945995.1\|184315_184561_-	hypothetical protein	NA	NA	NA	NA
WP_006500529.1\|184621_185311_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_006500528.1\|185629_185893_-	DNA-binding protein	NA	NA	NA	NA
WP_006500527.1\|185895_186087_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_080890454.1\|186257_186776_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_006500524.1\|187605_188754_+\|integrase	site-specific integrase	A0A1S5S7K9	Streptococcus_phage	1.5e-53	34.7
WP_123835535.1\|189089_189437_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039945992.1\|189968_190361_+	hypothetical protein	NA	NA	NA	NA
WP_039945991.1\|190357_190693_+	hypothetical protein	NA	NA	NA	NA
WP_006500523.1\|191215_191806_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_148313119.1\|191735_192968_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_039946028.1\|192948_193602_+	hypothetical protein	NA	NA	NA	NA
WP_039945990.1\|193601_193901_+	hypothetical protein	NA	NA	NA	NA
WP_045025294.1\|194273_195197_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.5e-29	30.4
WP_045025295.1\|195331_196462_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.1e-34	32.2
WP_052669128.1\|196572_197067_+	hypothetical protein	NA	NA	NA	NA
WP_006500519.1\|197285_198209_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	2.8e-31	31.0
198183:199240	attR	NA	NA	NA	NA

DBSCAN-SWA_2

370784 : 444059

Escherichia_phage(17.65%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039945898.1\|370784_373040_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	3.9e-127	41.7
WP_006500175.1\|373321_373510_+	hypothetical protein	NA	NA	NA	NA
WP_033935213.1\|373640_373907_+	phosphocarrier protein HPr	NA	NA	NA	NA
WP_006500173.1\|373908_375642_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_039945897.1\|375803_377012_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_039945896.1\|377014_378037_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_039945895.1\|378041_379061_+	flippase-like domain-containing protein	NA	NA	NA	NA
WP_006500168.1\|379140_379389_+	DUF1797 family protein	NA	NA	NA	NA
WP_006500167.1\|386010_386352_+	hypothetical protein	NA	NA	NA	NA
WP_006500519.1\|387254_388178_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	2.8e-31	31.0
WP_006499922.1\|388286_388784_+\|tRNA	prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_006499921.1\|389140_389827_+	hypothetical protein	NA	NA	NA	NA
WP_109588286.1\|390276_391050_+	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA
WP_039945757.1\|391317_391821_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
WP_006499918.1\|392092_393679_+	asparagine synthase B	I3UL62	Ostreococcus_lucimarinus_virus	1.1e-102	42.8
WP_006499917.1\|393854_394061_-	hypothetical protein	NA	NA	NA	NA
WP_006499916.1\|394039_394267_+	hypothetical protein	NA	NA	NA	NA
WP_006499915.1\|394375_395812_-	MFS transporter	NA	NA	NA	NA
WP_006499914.1\|396259_396619_-	iron-sulfur cluster biosynthesis protein	NA	NA	NA	NA
WP_006499913.1\|396941_398465_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_006499912.1\|398559_399486_+	NAD-binding protein	NA	NA	NA	NA
WP_039945755.1\|399723_400293_-	TIGR00730 family Rossman fold protein	A0A2I2L3F0	Orpheovirus	1.2e-11	26.7
WP_006499909.1\|400697_401066_-	DUF4828 domain-containing protein	NA	NA	NA	NA
WP_033934960.1\|401224_402235_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_006499907.1\|402269_403595_+	DEAD/DEAH box helicase	E3T5E1	Cafeteria_roenbergensis_virus	5.1e-34	29.0
WP_006499906.1\|404218_404653_-	GtrA family protein	NA	NA	NA	NA
WP_006499905.1\|404652_405105_-	flavodoxin	NA	NA	NA	NA
WP_006499904.1\|405235_406093_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_006499903.1\|406308_407229_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_006499902.1\|407313_408114_+	recombination regulator RecX	NA	NA	NA	NA
WP_039945752.1\|408215_408869_+	sugar transferase	NA	NA	NA	NA
WP_006499900.1\|408884_409655_+	DUF4422 domain-containing protein	NA	NA	NA	NA
WP_006499899.1\|409815_410685_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.7e-102	61.5
WP_006499898.1\|410696_411278_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	5.5e-33	42.2
WP_006499897.1\|411289_412330_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.4e-58	38.2
WP_006499896.1\|412403_413249_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.7e-33	38.9
WP_006499895.1\|413339_414551_+	hypothetical protein	NA	NA	NA	NA
WP_006499894.1\|414553_415189_+	chain-length determining protein	NA	NA	NA	NA
WP_006499893.1\|415247_416057_+	hypothetical protein	NA	NA	NA	NA
WP_039945749.1\|416071_417067_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_006499891.1\|417075_417999_+	glycosyltransferase	NA	NA	NA	NA
WP_006499890.1\|418013_418784_+	DUF4422 domain-containing protein	NA	NA	NA	NA
WP_006499889.1\|418806_420141_+	hypothetical protein	NA	NA	NA	NA
WP_006499888.1\|420238_421360_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	4.7e-166	77.3
WP_006499887.1\|421363_422788_+	flippase	NA	NA	NA	NA
WP_039945743.1\|423053_423923_+	hypothetical protein	NA	NA	NA	NA
WP_080890457.1\|424157_426902_+	peptidoglycan DD-metalloendopeptidase family protein	E9LUJ4	Lactobacillus_phage	3.9e-36	52.3
WP_045025295.1\|427093_428224_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.1e-34	32.2
WP_052669134.1\|428278_431731_+	hypothetical protein	L0P6H6	Lactobacillus_phage	8.1e-07	27.9
WP_080890458.1\|431842_432328_+	hypothetical protein	NA	NA	NA	NA
WP_052669137.1\|432566_435992_+	KxYKxGKxW signal peptide domain-containing protein	A0A059PAX1	Leuconostoc_phage	2.2e-36	54.8
WP_039946475.1\|436190_437171_+	glycosyltransferase family 2 protein	A0A2H5BFL1	Salmonella_phage	1.0e-47	36.3
WP_052669142.1\|437167_438688_+	hypothetical protein	NA	NA	NA	NA
WP_045025302.1\|438920_440111_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.4e-35	27.1
WP_158423323.1\|442168_442342_-	hypothetical protein	NA	NA	NA	NA
WP_045025303.1\|442475_443666_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	4.1e-35	26.8
WP_045025490.1\|443729_444059_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

558231 : 677893

144

Lactobacillus_phage(33.9%)

tail,tRNA,capsid,protease,transposase,plate,holin,terminase,integrase,portal,head

attL 556489:556505|attR 649126:649142

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
556489:556505	attL	NA	NA	NA	NA
WP_033935311.1\|558231_558867_+\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA
WP_039945841.1\|558893_560204_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_033935309.1\|560306_561029_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_006500069.1\|561177_563841_+	DNA polymerase I	F8WQ35	Bacillus_phage	3.3e-48	32.7
WP_039945839.1\|563974_564814_+	DNA-formamidopyrimidine glycosylase	NA	NA	NA	NA
WP_006500067.1\|564810_565413_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_033935305.1\|565464_565938_+	transcriptional repressor NrdR	NA	NA	NA	NA
WP_006500065.1\|565954_567343_+	DnaD domain protein	NA	NA	NA	NA
WP_006500064.1\|567358_568285_+	primosomal protein DnaI	S5MU12	Brevibacillus_phage	1.2e-26	35.6
WP_006500063.1\|568513_569026_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.2e-13	33.8
WP_033935301.1\|569050_569248_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_006500061.1\|569300_569654_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_033935300.1\|569796_570324_+	YqeG family HAD IIIA-type phosphatase	NA	NA	NA	NA
WP_039945837.1\|570324_571449_+	ribosome biogenesis GTPase YqeH	NA	NA	NA	NA
WP_006500058.1\|571475_571787_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
WP_006500057.1\|571803_572439_+	nicotinate-nucleotide adenylyltransferase	NA	NA	NA	NA
WP_006500056.1\|572431_573046_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	NA	NA	NA	NA
WP_006500055.1\|573045_573402_+	ribosome silencing factor	NA	NA	NA	NA
WP_006500054.1\|573404_574154_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_039945834.1\|574153_575299_+	nucleotidyltransferase	NA	NA	NA	NA
WP_006500052.1\|575360_575915_+	DUF177 domain-containing protein	NA	NA	NA	NA
WP_006500051.1\|575966_576143_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_006500050.1\|576359_577454_-\|integrase	site-specific integrase	E9LUK6	Lactobacillus_phage	2.1e-78	46.8
WP_006500049.1\|577536_578400_-	DUF5067 domain-containing protein	Q6SEF8	Lactobacillus_prophage	5.6e-50	67.9
WP_006500048.1\|578447_579095_-	helix-turn-helix domain-containing protein	Q9G0C2	Lactococcus_phage	4.2e-42	51.3
WP_039945831.1\|579252_579489_+	helix-turn-helix transcriptional regulator	A0A2K9VBT6	Staphylococcus_phage	4.3e-13	50.6
WP_006500046.1\|579493_580276_+	Rha family transcriptional regulator	E9LUL6	Lactobacillus_phage	3.5e-99	68.1
WP_006500045.1\|580288_580477_+	hypothetical protein	NA	NA	NA	NA
WP_006500044.1\|580479_580794_+	DUF771 domain-containing protein	NA	NA	NA	NA
WP_158423324.1\|580917_581085_+	hypothetical protein	NA	NA	NA	NA
WP_006500042.1\|581116_581905_+	ParB N-terminal domain-containing protein	A0A141E1C9	Streptococcus_phage	6.3e-16	29.2
WP_006500040.1\|582054_582555_+	siphovirus Gp157 family protein	H2BDF7	Pseudomonas_virus	8.4e-06	29.9
WP_006500039.1\|582554_583253_+	DUF1071 domain-containing protein	X2CXM9	Lactobacillus_phage	4.0e-38	46.9
WP_006500038.1\|583252_583687_+	single-stranded DNA-binding protein	Q0ILF5	Lactococcus_phage	3.5e-32	51.3
WP_006500037.1\|583686_584370_+	hypothetical protein	E9LUU3	Lactobacillus_phage	3.4e-66	57.3
WP_039945829.1\|584373_584583_+	hypothetical protein	NA	NA	NA	NA
WP_039945827.1\|584579_584828_-	hypothetical protein	NA	NA	NA	NA
WP_158423337.1\|585073_585703_+	conserved phage C-terminal domain-containing protein	B8R680	Lactobacillus_phage	2.8e-22	60.6
WP_006500034.1\|585713_586544_+	ATP-binding protein	E9LUM7	Lactobacillus_phage	8.4e-43	38.5
WP_006500033.1\|586555_586780_+	hypothetical protein	NA	NA	NA	NA
WP_158423325.1\|586782_586956_+	hypothetical protein	NA	NA	NA	NA
WP_006500031.1\|586980_587163_+	hypothetical protein	NA	NA	NA	NA
WP_052669329.1\|587162_587606_+	RusA family crossover junction endodeoxyribonuclease	A8YQM5	Lactobacillus_phage	4.5e-27	45.5
WP_006500030.1\|587595_588096_+	hypothetical protein	NA	NA	NA	NA
WP_006500029.1\|588098_588353_+	hypothetical protein	NA	NA	NA	NA
WP_006500028.1\|588336_588606_+	hypothetical protein	NA	NA	NA	NA
WP_006500027.1\|588752_588932_+	hypothetical protein	NA	NA	NA	NA
WP_052669161.1\|588945_589233_+	helix-turn-helix transcriptional regulator	A0A1W6JQE6	Staphylococcus_phage	3.0e-16	50.6
WP_052669164.1\|589235_589622_+	helix-turn-helix transcriptional regulator	O34051	Streptococcus_phage	1.7e-06	49.3
WP_006500025.1\|589692_590184_+	hypothetical protein	NA	NA	NA	NA
WP_039945822.1\|591350_591851_+	hypothetical protein	L0P6X1	Lactobacillus_phage	2.2e-22	46.2
WP_039945820.1\|591932_592475_+	HNH endonuclease	L0P6F5	Lactobacillus_phage	9.6e-40	42.1
WP_006500023.1\|592530_593766_+\|terminase	PBSX family phage terminase large subunit	A9D9R9	Lactobacillus_prophage	6.2e-135	56.8
WP_148313156.1\|593824_595222_+\|portal	phage portal protein	A0A0A1ER87	Lactobacillus_phage	4.6e-110	46.9
WP_006500021.1\|595211_596609_+\|capsid	minor capsid protein	Q6SED6	Lactobacillus_prophage	9.3e-95	42.6
WP_039945818.1\|596614_596842_+	hypothetical protein	NA	NA	NA	NA
WP_039945816.1\|596910_597243_+	YjcQ family protein	Q6SED4	Lactobacillus_prophage	4.1e-33	61.8
WP_052669167.1\|597423_598086_+	DUF4355 domain-containing protein	A0A0P0ID10	Lactobacillus_phage	4.1e-16	43.0
WP_006500017.1\|598088_598919_+\|capsid	N4-gp56 family major capsid protein	Q9AZ61	Lactococcus_phage	2.3e-85	62.3
WP_006500016.1\|598929_599286_+\|head,tail	phage head-tail connector protein	A0A0P0IZF6	Lactobacillus_phage	1.6e-27	58.5
WP_006500015.1\|599286_599595_+	hypothetical protein	A0A0N7IR97	Lactobacillus_phage	8.5e-17	50.5
WP_039945814.1\|599587_599974_+	phage protein	A0A0A1ENQ3	Lactobacillus_phage	1.7e-22	48.4
WP_039945812.1\|599990_600383_+	phage major structural protein	A0A0A1EN91	Lactobacillus_phage	6.7e-27	48.8
WP_006500013.1\|600393_600984_+\|tail	phage tail protein	A0A0A1ELH3	Lactobacillus_phage	1.0e-47	52.6
WP_006500012.1\|600995_601343_+\|tail	tail assembly chaperone	A0A0P0IJV9	Lactobacillus_phage	6.2e-24	48.7
WP_006500011.1\|601384_601777_+	hypothetical protein	A0A1B0Y2Q4	Lactobacillus_phage	4.1e-16	40.7
WP_006500010.1\|601778_603992_+	tape measure protein	A0A2H4J016	uncultured_Caudovirales_phage	3.3e-54	70.1
WP_006500009.1\|603991_604753_+	hypothetical protein	Q6SEC3	Lactobacillus_prophage	3.0e-55	46.0
WP_006500008.1\|604752_607044_+\|tail	phage tail protein	Q6SEC2	Lactobacillus_prophage	5.6e-182	45.1
WP_006500007.1\|607043_607220_+	hypothetical protein	NA	NA	NA	NA
WP_006500006.1\|607234_608596_+\|plate	BppU family phage baseplate upper protein	NA	NA	NA	NA
WP_006500005.1\|608616_609126_+	Ig-like domain-containing protein	NA	NA	NA	NA
WP_080890459.1\|609141_609594_+	fibronectin type III domain-containing protein	NA	NA	NA	NA
WP_039945810.1\|609609_610053_+	hypothetical protein	NA	NA	NA	NA
WP_006500002.1\|610069_610438_+	hypothetical protein	NA	NA	NA	NA
WP_148313122.1\|610455_610590_+	XkdX family protein	A0A1W6JQM1	Staphylococcus_phage	2.5e-05	48.8
WP_045025499.1\|610707_611109_+\|holin	phage holin family protein	A0A097BY69	Enterococcus_phage	6.3e-20	42.0
WP_039945807.1\|611086_612025_+	SH3 domain-containing protein	Q6SE63	Lactobacillus_prophage	5.0e-52	40.7
WP_006499998.1\|612082_613144_+	hypothetical protein	NA	NA	NA	NA
WP_006499997.1\|613276_613621_+	hypothetical protein	NA	NA	NA	NA
WP_039945805.1\|613632_614199_+	hypothetical protein	NA	NA	NA	NA
WP_006499995.1\|614638_615325_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-30	32.0
WP_006499994.1\|615344_616829_+	HAMP domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	3.0e-27	31.3
WP_147648935.1\|616892_618140_-	MATE family efflux transporter	NA	NA	NA	NA
WP_006499992.1\|618410_618821_-	peptide deformylase	NA	NA	NA	NA
WP_006499991.1\|618906_619857_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_006499990.1\|619946_620219_-	acylphosphatase	NA	NA	NA	NA
WP_006499989.1\|620313_621087_+	RNA methyltransferase	NA	NA	NA	NA
WP_006499988.1\|621215_621743_+	hypothetical protein	NA	NA	NA	NA
WP_045025309.1\|621764_622103_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_006499986.1\|622409_623456_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.4e-26	37.6
WP_006499985.1\|623461_625894_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_006499984.1\|625961_626330_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_006499983.1\|626396_627050_+	uridine kinase	A0A1V0SAA3	Catovirus	4.9e-38	38.6
WP_006499982.1\|627146_627623_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_143112705.1\|627755_628133_+	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_148313157.1\|628132_630043_+	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.9e-90	37.6
WP_006499979.1\|630289_632917_-	YfhO family protein	NA	NA	NA	NA
WP_006499978.1\|633151_635215_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_033935278.1\|635359_635509_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_006499977.1\|635516_635684_-	hypothetical protein	NA	NA	NA	NA
WP_039945800.1\|635863_636418_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_006499975.1\|636420_637083_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_006499974.1\|637079_637319_+	YqgQ family protein	NA	NA	NA	NA
WP_006499973.1\|637357_638332_+	ROK family glucokinase	NA	NA	NA	NA
WP_174435173.1\|638443_638851_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_006499971.1\|638905_639082_-	DUF3042 family protein	NA	NA	NA	NA
WP_039945797.1\|639169_640093_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_006499969.1\|640297_641641_+	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	1.2e-09	26.6
WP_006499967.1\|642085_642970_+	hypothetical protein	NA	NA	NA	NA
WP_034540496.1\|642959_644000_+	hypothetical protein	NA	NA	NA	NA
WP_033935194.1\|644001_644553_+	dUTP diphosphatase	NA	NA	NA	NA
WP_052669171.1\|645321_646455_-\|integrase	site-specific integrase	A0A172LN96	Lactococcus_phage	6.3e-33	29.9
WP_006499963.1\|646521_647217_-	helix-turn-helix transcriptional regulator	L0P7E1	Lactobacillus_phage	1.7e-12	55.2
WP_039945795.1\|647347_647572_+	hypothetical protein	NA	NA	NA	NA
WP_006499961.1\|647571_647832_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039945792.1\|647895_648828_+	hypothetical protein	Q8SDH3	Lactococcus_phage	2.5e-27	56.9
WP_052669175.1\|648843_649710_+	AAA family ATPase	E9LUM7	Lactobacillus_phage	5.9e-31	33.0
649126:649142	attR	NA	NA	NA	NA
WP_039945791.1\|649911_651429_+	AAA family ATPase	A0A2I7R7D8	Vibrio_phage	3.9e-54	33.7
WP_006499957.1\|651690_652020_+	hypothetical protein	NA	NA	NA	NA
WP_006499956.1\|652034_652538_+	hypothetical protein	NA	NA	NA	NA
WP_045025310.1\|652656_653787_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	1.3e-35	31.6
WP_158423326.1\|653807_656096_+	KxYKxGKxW signal peptide domain-containing protein	NA	NA	NA	NA
WP_039946188.1\|656287_656665_+	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_006500918.1\|656664_656952_+	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_039946187.1\|656951_658895_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	8.7e-91	36.9
WP_006500916.1\|659084_659735_-	TenA family protein	NA	NA	NA	NA
WP_003676621.1\|659924_660524_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	2.8e-24	36.2
WP_148313123.1\|660460_661369_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	8.9e-14	27.6
WP_002816262.1\|661559_661991_+	CopY/TcrY family copper transport repressor	NA	NA	NA	NA
WP_039945234.1\|662242_664396_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.1e-60	30.3
WP_080890461.1\|667733_667898_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_167541570.1\|667916_668063_+	hypothetical protein	NA	NA	NA	NA
WP_006499427.1\|668401_669058_+\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_006499426.1\|669195_669888_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.6e-29	34.6
WP_045025311.1\|669884_670274_+	hypothetical protein	NA	NA	NA	NA
WP_148313124.1\|671026_671887_+\|transposase	IS3 family transposase	A0A0C5AEA5	Paenibacillus_phage	3.9e-19	31.0
WP_006499559.1\|672030_672918_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	2.9e-17	31.0
WP_006499560.1\|672932_673736_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_006499561.1\|673767_674223_+	transcriptional regulator Spx	NA	NA	NA	NA
WP_080890462.1\|674250_674508_-\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	2.8e-05	40.6
WP_013437565.1\|675574_675928_+	hypothetical protein	NA	NA	NA	NA
WP_006499564.1\|677251_677560_+	50S ribosomal protein L21	NA	NA	NA	NA
WP_006499565.1\|677572_677893_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA

DBSCAN-SWA_4

1425937 : 1434391

Staphylococcus_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045025409.1\|1425937_1427026_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.3e-56	36.0
WP_045025410.1\|1427059_1427596_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA
WP_045025411.1\|1428040_1428883_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	5.2e-16	32.6
WP_045025551.1\|1429082_1429721_+	hemolysin III family protein	NA	NA	NA	NA
WP_045025412.1\|1429717_1430212_-	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	3.6e-25	34.8
WP_033934748.1\|1430223_1431186_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	5.9e-117	61.8
WP_045025413.1\|1431263_1433177_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	6.4e-54	29.7
WP_045025414.1\|1433176_1434391_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	1.5e-45	47.5

DBSCAN-SWA_5

1952316 : 1960585

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006500398.1\|1952316_1952910_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.1e-56	55.8
WP_006500399.1\|1952962_1953901_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	1.6e-50	38.1
WP_006500400.1\|1953919_1954909_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	7.5e-91	53.3
WP_006500401.1\|1954921_1955791_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.4e-08	27.7
WP_006500402.1\|1955924_1956677_-	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	4.3e-22	33.3
WP_006500403.1\|1956677_1957583_-	shikimate dehydrogenase	NA	NA	NA	NA
WP_006500404.1\|1957732_1960585_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	3.8e-305	55.3

DBSCAN-SWA_6

2187324 : 2195872

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006499348.1\|2187324_2187915_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	9.2e-28	34.2
WP_006499347.1\|2187928_2188975_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-64	42.6
WP_006499346.1\|2188971_2190441_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.5e-58	34.4
WP_006499345.1\|2190416_2192645_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.0e-147	41.1
WP_006499344.1\|2192650_2193331_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_006499343.1\|2193331_2193580_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_006499342.1\|2193584_2194301_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	1.6e-37	37.0
WP_006499341.1\|2194573_2195872_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	2.7e-19	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP011014

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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2. NZ_CP011013

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection