CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015761	Salmonella bongori NCTC 12419, complete genome	2 crisprs	DinG,cas14j,cas3,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	1	15	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015761_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015761_1

2791744-2792992

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

20 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_015761_1

>merge|NC_015761|1|2791744-2792992|CRISPRCasFinder,CRT,PILER-CR
AGTAAAAGCCCCGCTGGCGCGGGGAACACGCTGGTATTGGTACTATGGTGGGAGGTCATTGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTGATAATTCAGGGAAATTCGTCATTCTGACCGGTTTATCCCCTCTGGCGCGGGGAACACCTACCCTAAATCTTTGCCAATCTCTCCATACGCGGTTTATCCCCGCTGGCGCGGGGAACACTGATATCCATTGACACCCCTCCGTATTGAATTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGATAATCGTCCAGGCCTCAGACGGGTAGTGCGGTTTATCCCCGCTGGCGCGGGGAACACGGCGCGAATTGATTTAAACGGCAACTGGATTCCGGTTTATCCCCGCTGGCGCGGGGAACACTTGGCTGGAATGGGGGCCGATGGCAACCTGTACGGTTTATCCCCGCTGCCGCGGGGAACACCTAGAATGCACCCCGTATTTTACACAGCGTAACGGTTTATCCCCGCTGGCGCGGGGAACACAACCCCTTGTGTCGGCAAAACCCGGTTATGTCCGGTTTATCCCCGCTGGCGCGGGGAACACTCCTTGCTACCAACAATTGTAGCTGCAACTCCCGGTTTATCCCCGCTGGCGCGGGGAACACCGTATTACCGTGAATCGCTATTTTGTTTGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTCATTTGCGCCATCCCACCATTGAGAAACGCGGTTTATCCCCGCTGGCGCGGGGAACACATTAATTCCGTTAGTATATCGCTGAATATATCCGGTTTATCCCCGCTGGCGCGGGGAACACTTAACAAGTTGTTAGCGTAAGATGACTATATGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTATGCCAGCTAATGACGGAAACAGGAATTACGGTTTATCCCCGCTGGCGCGGGGAACACTAATTTCTCCCGCACTTAATAAATCTATTATTCGGTTTATCCCCGCTGGCGCGGGGAACACTTTTTGATTTTTATAACGTTGGAGTCGCCCAACGGTTTATCCCCGCTGGCGCGGGGAACACCTAAAACTGTGGGTCTAGCACCTCCATCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACACTGTACCACATTTGCCCGGTGTAACGTATACCCGGGTTTATCCCCGCTGGCGCGGGGAACACCCGTGTTCCTGGCTCGCGGTGGTCTGATGTCTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_015761|1|1|2791744-2792992|CRISPRCasFinder
AGTAAAAGCCCCGCTGGCGCGGGGAACAC	GCTGGTATTGGTACTATGGTGGGAGGTCATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTGATAATTCAGGGAAATTCGTCATTCTGAC
CGGTTTATCCCCTCTGGCGCGGGGAACAC	CTACCCTAAATCTTTGCCAATCTCTCCATACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATATCCATTGACACCCCTCCGTATTGAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGATAATCGTCCAGGCCTCAGACGGGTAGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCGCGAATTGATTTAAACGGCAACTGGATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGCTGGAATGGGGGCCGATGGCAACCTGTA
CGGTTTATCCCCGCTGCCGCGGGGAACAC	CTAGAATGCACCCCGTATTTTACACAGCGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACCCCTTGTGTCGGCAAAACCCGGTTATGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCTTGCTACCAACAATTGTAGCTGCAACTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTACCGTGAATCGCTATTTTGTTTGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTCATTTGCGCCATCCCACCATTGAGAAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAATTCCGTTAGTATATCGCTGAATATATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACAAGTTGTTAGCGTAAGATGACTATATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTATGCCAGCTAATGACGGAAACAGGAATTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATTTCTCCCGCACTTAATAAATCTATTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTTGATTTTTATAACGTTGGAGTCGCCCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAAAACTGTGGGTCTAGCACCTCCATCCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACCACATTTGCCCGGTGTAACGTATACCC
GGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTGTTCCTGGCTCGCGGTGGTCTGATGTCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_015761|1|1|2791744-2792992|CRT
AGTAAAAGCCCCGCTGGCGCGGGGAACAC	GCTGGTATTGGTACTATGGTGGGAGGTCATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTGATAATTCAGGGAAATTCGTCATTCTGAC
CGGTTTATCCCCTCTGGCGCGGGGAACAC	CTACCCTAAATCTTTGCCAATCTCTCCATACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATATCCATTGACACCCCTCCGTATTGAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGATAATCGTCCAGGCCTCAGACGGGTAGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCGCGAATTGATTTAAACGGCAACTGGATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGCTGGAATGGGGGCCGATGGCAACCTGTA
CGGTTTATCCCCGCTGCCGCGGGGAACAC	CTAGAATGCACCCCGTATTTTACACAGCGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACCCCTTGTGTCGGCAAAACCCGGTTATGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCTTGCTACCAACAATTGTAGCTGCAACTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTACCGTGAATCGCTATTTTGTTTGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTCATTTGCGCCATCCCACCATTGAGAAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAATTCCGTTAGTATATCGCTGAATATATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACAAGTTGTTAGCGTAAGATGACTATATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTATGCCAGCTAATGACGGAAACAGGAATTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATTTCTCCCGCACTTAATAAATCTATTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTTGATTTTTATAACGTTGGAGTCGCCCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAAAACTGTGGGTCTAGCACCTCCATCCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACCACATTTGCCCGGTGTAACGTATACCC
GGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTGTTCCTGGCTCGCGGTGGTCTGATGTCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_015761|1|1|2791805-2792992|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTGATAATTCAGGGAAATTCGTCATTCTGAC
CGGTTTATCCCCTCTGGCGCGGGGAACAC	CTACCCTAAATCTTTGCCAATCTCTCCATACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATATCCATTGACACCCCTCCGTATTGAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGATAATCGTCCAGGCCTCAGACGGGTAGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCGCGAATTGATTTAAACGGCAACTGGATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGGCTGGAATGGGGGCCGATGGCAACCTGTA
CGGTTTATCCCCGCTGCCGCGGGGAACAC	CTAGAATGCACCCCGTATTTTACACAGCGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACCCCTTGTGTCGGCAAAACCCGGTTATGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCTTGCTACCAACAATTGTAGCTGCAACTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTACCGTGAATCGCTATTTTGTTTGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTCATTTGCGCCATCCCACCATTGAGAAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAATTCCGTTAGTATATCGCTGAATATATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAACAAGTTGTTAGCGTAAGATGACTATATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTATGCCAGCTAATGACGGAAACAGGAATTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATTTCTCCCGCACTTAATAAATCTATTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTTTGATTTTTATAACGTTGGAGTCGCCCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAAAACTGTGGGTCTAGCACCTCCATCCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACCACATTTGCCCGGTGTAACGTATACCC
GGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTGTTCCTGGCTCGCGGTGGTCTGATGTCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015761.1\|WP_001098366.1\|2787939_2789379_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_015761.1\|WP_000046974.1\|2787347_2787953_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_015761.1\|WP_024135102.1\|2798875_2801539_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015761.1\|WP_000281488.1\|2794298_2794949_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_015761.1\|WP_001028359.1\|2796756_2797311_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_015761.1\|WP_000085113.1\|2794930_2795677_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_015761.1\|WP_001096609.1\|2803019_2803754_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_015761.1\|WP_000134254.1\|2784217_2785267_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_015761.1\|WP_001219254.1\|2785263_2785743_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_015761.1\|WP_000144829.1\|2793381_2794302_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_015761.1\|WP_001221542.1\|2783475_2784237_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_015761.1\|WP_000834842.1\|2797307_2798864_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_015761.1\|WP_000517485.1\|2786471_2786783_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_015761.1\|WP_020845101.1\|2786973_2787297_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_015761.1\|WP_001145525.1\|2801975_2802929_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_015761.1\|WP_000062296.1\|2793088_2793382_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_015761.1\|WP_000372380.1\|2789388_2790297_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_015761.1\|WP_000206422.1\|2795687_2796743_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_015761.1\|WP_000490491.1\|2790549_2791602_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_015761.1\|WP_000741654.1\|2785742_2786453_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
NC_015761.1\|WP_001098366.1\|2787939_2789379_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_015761.1\|WP_000046974.1\|2787347_2787953_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	8.61836e-146
NC_015761.1\|WP_024135102.1\|2798875_2801539_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.5508e-171
NC_015761.1\|WP_000281488.1\|2794298_2794949_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.96993e-74
NC_015761.1\|WP_001028359.1\|2796756_2797311_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.76417e-31
NC_015761.1\|WP_000085113.1\|2794930_2795677_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.02999e-47
NC_015761.1\|WP_001096609.1\|2803019_2803754_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.96458e-136
NC_015761.1\|WP_000134254.1\|2784217_2785267_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_015761.1\|WP_001219254.1\|2785263_2785743_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	6.44996e-105
NC_015761.1\|WP_000144829.1\|2793381_2794302_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.20581e-158
NC_015761.1\|WP_001221542.1\|2783475_2784237_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.43378e-146
NC_015761.1\|WP_000834842.1\|2797307_2798864_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	2.83189e-175
NC_015761.1\|WP_000517485.1\|2786471_2786783_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.96707e-63
NC_015761.1\|WP_020845101.1\|2786973_2787297_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	2.27176e-47
NC_015761.1\|WP_001145525.1\|2801975_2802929_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_015761.1\|WP_000062296.1\|2793088_2793382_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.41158e-63
NC_015761.1\|WP_000372380.1\|2789388_2790297_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_015761.1\|WP_000206422.1\|2795687_2796743_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	3.56056e-138
NC_015761.1\|WP_000490491.1\|2790549_2791602_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_015761.1\|WP_000741654.1\|2785742_2786453_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.35818e-118

>NC_015761.1|WP_000490491.1|2790549_2791602_+|aminopeptidase
MFSATRRFTAILALGVSAVLPALAASPKPGEMANIQARHIATFFPGRMTGSPAEMLSADYLRQQFSQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGNVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGIDDDAVGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENVLQRMSATEKKNTLLVINLDNLVVGDKLYFNSGKNTPEAVRTLTRDRALAIARQHGIAASTNPGLNPAYPKGTGCCNDAEVFDDAGISVLSVEATNWSLGKKDGYQQRAKNASFPDGNSWHNVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAAPIQPK
>NC_015761.1|WP_000372380.1|2789388_2790297_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGSLPFPLLHVDTGWKFREMYAFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGLINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLIMVDDDRIDLQPGEVIQKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NC_015761.1|WP_001098366.1|2787939_2789379_-|sulfate-adenylyltransferase-subunit-CysN
MNTTLAQQIADEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREEAFARIREDYLTFAEQLPGNLDIRFVPLSALEGDNIAVQSAAMRWYSGPTLLEVLETVDIQRVADRQPMRFPVQYVNRPNLDFRGYAGTLASGCVRVGQRIKVLPSGVVSSVARIVTFDGDKDDAYAGEAITLVLNNEIDISRGDLLLAATETLTPVQRAAIDVVWMAEQPLTPGQSYDVKLAGKKTRARIDNIRYQIDINHLTQRDVESLPLNGIGLVEMTFDEPLALDVYQQNPVTGGLIFIDRLSNVTVGAGMVREAVEGNVTPPEKYSAFELELNALVRRYFPHWDARDLSGDKHGAA
>NC_015761.1|WP_000046974.1|2787347_2787953_-|adenylyl-sulfate-kinase
MAQHDENVVWHSHPVTVAAREKLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRKENVRRVGEVASLMADAGLIVLTAFISPHRAERQLVQERVGNDRFIEIYVDTPLAICEQRDPKGLYKKARAGELRHFTGIDAIYEAPESPQIHLNGEQLVTNLVSQLLDLLRQRDIIRS
>NC_015761.1|WP_020845101.1|2786973_2787297_-|DUF3561-family-protein
MRNSHNITFTRSDAFIVDDDATSSLPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKLLFSMMFTLVAVGALFGVLFIWLLG
>NC_015761.1|WP_000517485.1|2786471_2786783_-|cell-division-protein-FtsB
MGKLTLLLLTLLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAQTAGQNNR
>NC_015761.1|WP_000741654.1|2785742_2786453_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDTRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLSRLLAISANNRVGGILASPVRDTMKRGEPGKSVIAHTVERGDLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALIEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_015761.1|WP_001219254.1|2785263_2785743_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPVIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_015761.1|WP_000134254.1|2784217_2785267_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREISFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGNNLQGALRWAQSDAPVRDRNKRSFWLSAARSALFNQIVHQRLTKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKALMITASLPGSGEWGTQREALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTVGDYAHIAE
>NC_015761.1|WP_001221542.1|2783475_2784237_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAVVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVADWLDSVGVGTQW
>NC_015761.1|WP_000062296.1|2793088_2793382_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMMVVATENVPPRLRGRLAIWLLEIRAGVYVGDTSKRIREMIWQQITQLGGEGNVVMAWATNTESGFEFQTWGENRRIPVDVDGLRLVSFLPIQNQ
>NC_015761.1|WP_000144829.1|2793381_2794302_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSIEQLRGIEGSRVRATYALLAKQYGVKWNGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSTKLTGRLIPLIENVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHS
>NC_015761.1|WP_000281488.1|2794298_2794949_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWELFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFVPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKMQGDSQDIWPYQQQAALAWLARQGEQNGFSLRQASVEAYRQQQLRREKSRQMIQFSSVDYTGVLVITDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NC_015761.1|WP_000085113.1|2794930_2795677_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGRAADVLREAYRRYQDQFNALKLTLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NC_015761.1|WP_000206422.1|2795687_2796743_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILMESGIDAKKAVEYVEKIASCFGKVKADKKAKDPLTNAETEQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRHDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRAASEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTDQLNVAVQRITSLHKNMNQVYDQQTDIASFDVMNQQGSMKDVLDFICA
>NC_015761.1|WP_001028359.1|2796756_2797311_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNIVKDDHKATLRQWHEELQEKRGARASLRRSVTVNDVCLSEGFRSLLMQTHTLWKIEGQEWRFTALALTAAVAANVKTIDERQTFAAQLGQMTGNNPVMSERRFTRLSTVKTSDELLRQLRRAVKLLNGAVNLISLAEDIFRWCQEHDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEKV
>NC_015761.1|WP_000834842.1|2797307_2798864_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKSFSLLTSCWLPVRFKDGSMGKMAPVDLADENVVDIAATRADLQGAAWQFLLGVLQCSIAPKNSARWEDIWEDGLTEPMLREALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPETPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQMYQGERQTPLWRKLWLNVMPQDAADLPLPAACDASVFPWLAATRTSEQASAITTPEHVNKLQAYWGMPRRIRLDFTTTQSGACDICGTNSDDLLSVMTVKNYGVNYDGWRHPLTPYRLPVKEGSGFFSVKPQPGGLIWRDWLGLSQENQTEANKEYPAQVVKVFNARRLKGVKAGLWGFGADFDNMKIRCWYEHHFPLLMTEGLMPDLRKATQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGDFLNLIRDLENGGEPDELLTKWRRELWLFTRRYFDDRVFTNPYESNDLKRIMTARKKYFTTSAEKQSAKAARAKKQEAAE
>NC_015761.1|WP_024135102.1|2798875_2801539_-|CRISPR-associated-helicase/endonuclease-Cas3
MLIYHYWGKSRQGEASGGDDYHLLCWHSLDVAAVGYWMVKNNIYFIDHYLKKLGLQDNEQAAQFFAWILCWHDIGKFAHSFQQLYRHEDLNIFNEPPGHYEKIPHTTLGYWLWNTWLSECPELFPPSSLSVRKSKRVMTLWMPVTTGHHGRPPDAIPEVDHFRQQDKDAAREFLLKIKALFPLITLPEAWDEDEGIAQFQQLSWFISATVVLADWTGSASHYFPRMAEKMPVEMYWQQALIKARKAITLFPTAANVSAFTGIETLFPFIQHPTPLQQKALTLDIHVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANSWLALYQPDSRPSLVLAHSARHLMDRFNQSIWSASLSGTEEPDDASPYSQGCAAWFTDSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIECQASNGNATILLSATLSQQQRDKLVAAFSRGVKRSVQAPLLGHDDYPWLTQVTQNELISQHIDTRKEVERSVNIGWLHSEASCLEYIGEAVKKGSCIAWIRNSVDDAIRIYRQLLLSKTIAAENLLLFHSRFAFHDRQRIEMQTLDLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHLRDRSGLVKTNGLDEREVPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGAIRMPQSARLLIESVYGDDVDMPAGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDFLPEKMSTRLAEESITLWLAKVVDDVLIPYAPGEHPWEMSALRVRKSWWEKHNGEFERLEGESFHRWCVEQHQNKDFAIVIVVSDSAACGYSATEGLTGKMEA
>NC_015761.1|WP_001145525.1|2801975_2802929_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLHFGNQQNYMLNETRLAQLLSADKEKATHRGYWNKLQDHFTSEKQDHALEVLHGMLYGHARNEPGEMEINVEGMSKIYAFKHLQRLACPADQDLFRIQMDASQTQLLFMIGDTVISQSSIQDTLNLSENAVVKSMDRAERELFLKICEMIGSTITWHADLLQGSASTLRKEVAGNAQIKEAVYKMMRPDEAPDHRLVEWRGSLTEKEESILACINADSFDIITQFCKLGYREVQSEVSFFMIHPCITYLLHSYSPITEFKETNTAFLNNFNQDYDNYHSNKRDIDPILEEIYLTHEHSLHIGKNNCSRNILML
>NC_015761.1|WP_001096609.1|2803019_2803754_-|phosphoadenosine-phosphosulfate-reductase
MAKLSLSALNERPKVDRVLALAETNAALETLSAEERIVWALENLPGEYVLSSSFGIQAAVSLHLVNQVYPGIPVILTDTGYLFAETYQFIDELTEKLNLNLKVYRAKESAAWQEARYGKLWEQGIEGIEKYNDINKVEPLNRALHELSAQTWFAGLRREQSGSRATLPVLAIQRGVFKVLPIIDWDNRTVFQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NC_015761_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015761_2

2808974-2810039

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

17 spacers

cas3,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NC_015761_2

>merge|NC_015761|2|2808974-2810039|PILER-CR,CRISPRCasFinder,CRT
CGATTTATCCCCGCTGGCGCGGGGAACACGAGGGCACCCAACCGCAGTATTTTTCATCTGCCGGTTTATCCCCGCTGGCGCGGGGAACACGTCAGAGCCGTTACCAAAGGATGATCCGGAAGCGGTTTATCCCCGCTGGCGCGGGGAACACCCAGCAGGAAACAGCGGATGCGTAACTGTTTCCGGTTTATCCCCGCTGGCGCGGGGAACACTGATCGATGACTTGCGAAAATTTGGCGTACATCGGTTTATCCCCGCTGGCGCGGGGAACACAAAAGGCGTTCCTGACATTTCATGTGATATTCCGGTTTATCCCCGCTGGCGCGGGGAACACTTTATAGCGTAGCCCTGATAAAACAAAAAAAACGGTTTATCCCCGCTGGCGCGGGGAACACCCGAAGCAACAAATGCAACGTTTAATTATTGGCGGTTTATCCCCGCTGGCGCGGGGAACACAATCAAGTTTTACACGCTGGCCGAGGGCGAACCGGTTTATCCCCGCTGGCGCGGGGAACACAACTACGTAAATTGGCGTGCTGCGCGTGGGTACGGTTTATCCCCGCTGGCGCGGGGAACACGCGGCAACCATGATATTTATAATGAACTCGCTCGGTTTATCCCCGCTGGCGCGGGGAACACAAAAGTTATCGTATGCGCCGAATTTTATGACTCGGTTTATCCCCGCTGGCGCGGGGAACACTACAAATAGAAGATTAGGATTTTCAGGAATAACGGTTTATCCCCGCTGGCGCGGGGAACACACCAGCCCAGAAATCAGCACGTCCTGAATTGTCGGTTTATCCCCGCTGGCGCGGGGAACACTTAATTAAAGTCTCTTCATTATACTGATTAGACGGTTTATCCCCGCTGGCGCGGGGAACACGGATCAACCTGACGCAACGCACGGTTAATGGCCGGTTTATCCCCGCTGGCGCGGGGAACACGCTGTTTTAGCATTTTATTAGCGGTATCCGCCCGGTTTATCCCCGCTGGCGCGGGGAACACATTTTCAGTACCTCCAGATGGGTCGGTTGCCGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_015761|2|2|2808974-2810039|PILER-CR
CGATTTATCCCCGCTGGCGCGGGGAACAC	GAGGGCACCCAACCGCAGTATTTTTCATCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCAGAGCCGTTACCAAAGGATGATCCGGAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGCAGGAAACAGCGGATGCGTAACTGTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATCGATGACTTGCGAAAATTTGGCGTACAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAAGGCGTTCCTGACATTTCATGTGATATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTATAGCGTAGCCCTGATAAAACAAAAAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGAAGCAACAAATGCAACGTTTAATTATTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCAAGTTTTACACGCTGGCCGAGGGCGAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTACGTAAATTGGCGTGCTGCGCGTGGGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGCAACCATGATATTTATAATGAACTCGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAAGTTATCGTATGCGCCGAATTTTATGACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACAAATAGAAGATTAGGATTTTCAGGAATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCAGCCCAGAAATCAGCACGTCCTGAATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAATTAAAGTCTCTTCATTATACTGATTAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCAACCTGACGCAACGCACGGTTAATGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGTTTTAGCATTTTATTAGCGGTATCCGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTCAGTACCTCCAGATGGGTCGGTTGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_015761|2|2|2808974-2810039|CRISPRCasFinder
CGATTTATCCCCGCTGGCGCGGGGAACAC	GAGGGCACCCAACCGCAGTATTTTTCATCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCAGAGCCGTTACCAAAGGATGATCCGGAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGCAGGAAACAGCGGATGCGTAACTGTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATCGATGACTTGCGAAAATTTGGCGTACAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAAGGCGTTCCTGACATTTCATGTGATATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTATAGCGTAGCCCTGATAAAACAAAAAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGAAGCAACAAATGCAACGTTTAATTATTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCAAGTTTTACACGCTGGCCGAGGGCGAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTACGTAAATTGGCGTGCTGCGCGTGGGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGCAACCATGATATTTATAATGAACTCGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAAGTTATCGTATGCGCCGAATTTTATGACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACAAATAGAAGATTAGGATTTTCAGGAATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCAGCCCAGAAATCAGCACGTCCTGAATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAATTAAAGTCTCTTCATTATACTGATTAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCAACCTGACGCAACGCACGGTTAATGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGTTTTAGCATTTTATTAGCGGTATCCGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTCAGTACCTCCAGATGGGTCGGTTGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_015761|2|2|2808974-2810039|CRT
CGATTTATCCCCGCTGGCGCGGGGAACAC	GAGGGCACCCAACCGCAGTATTTTTCATCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCAGAGCCGTTACCAAAGGATGATCCGGAAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGCAGGAAACAGCGGATGCGTAACTGTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATCGATGACTTGCGAAAATTTGGCGTACAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAAGGCGTTCCTGACATTTCATGTGATATTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTATAGCGTAGCCCTGATAAAACAAAAAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGAAGCAACAAATGCAACGTTTAATTATTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCAAGTTTTACACGCTGGCCGAGGGCGAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AACTACGTAAATTGGCGTGCTGCGCGTGGGTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGCAACCATGATATTTATAATGAACTCGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAAGTTATCGTATGCGCCGAATTTTATGACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACAAATAGAAGATTAGGATTTTCAGGAATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCAGCCCAGAAATCAGCACGTCCTGAATTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTAATTAAAGTCTCTTCATTATACTGATTAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCAACCTGACGCAACGCACGGTTAATGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTGTTTTAGCATTTTATTAGCGGTATCCGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTCAGTACCTCCAGATGGGTCGGTTGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015761.1\|WP_001290677.1\|2803837_2805550_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_015761.1\|WP_000097020.1\|2826111_2827464_-\|galactarate/glucarate/glycerate-transporter-GudP	unknown	unknown	gnl\|CDD\|273326
NC_015761.1\|WP_001275831.1\|2823407_2824748_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NC_015761.1\|WP_024135102.1\|2798875_2801539_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015761.1\|WP_001028359.1\|2796756_2797311_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_015761.1\|WP_000085113.1\|2794930_2795677_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_015761.1\|WP_000210866.1\|2812886_2814524_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_015761.1\|WP_001199954.1\|2810329_2811001_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_015761.1\|WP_000036734.1\|2811505_2812804_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_015761.1\|WP_001145525.1\|2801975_2802929_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_015761.1\|WP_001143356.1\|2807655_2808018_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_015761.1\|WP_000834842.1\|2797307_2798864_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_015761.1\|WP_000226832.1\|2815660_2817895_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NC_015761.1\|WP_001096609.1\|2803019_2803754_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_015761.1\|WP_000706495.1\|2822186_2823329_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NC_015761.1\|WP_000206422.1\|2795687_2796743_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_015761.1\|WP_000211332.1\|2805549_2807349_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_015761.1\|WP_024135103.1\|2814751_2815543_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_015761.1\|WP_000046873.1\|2817946_2819242_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NC_015761.1\|WP_024135104.1\|2824768_2826109_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799

Protein	Function_ID	Function_description	E-value
NC_015761.1\|WP_001290677.1\|2803837_2805550_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_015761.1\|WP_000097020.1\|2826111_2827464_-\|galactarate/glucarate/glycerate-transporter-GudP	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	5.60112e-159
NC_015761.1\|WP_001275831.1\|2823407_2824748_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NC_015761.1\|WP_024135102.1\|2798875_2801539_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.5508e-171
NC_015761.1\|WP_001028359.1\|2796756_2797311_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.76417e-31
NC_015761.1\|WP_000085113.1\|2794930_2795677_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.02999e-47
NC_015761.1\|WP_000210866.1\|2812886_2814524_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_015761.1\|WP_001199954.1\|2810329_2811001_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	7.94881e-156
NC_015761.1\|WP_000036734.1\|2811505_2812804_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_015761.1\|WP_001145525.1\|2801975_2802929_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_015761.1\|WP_001143356.1\|2807655_2808018_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	4.20305e-57
NC_015761.1\|WP_000834842.1\|2797307_2798864_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	2.83189e-175
NC_015761.1\|WP_000226832.1\|2815660_2817895_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NC_015761.1\|WP_001096609.1\|2803019_2803754_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.96458e-136
NC_015761.1\|WP_000706495.1\|2822186_2823329_-\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NC_015761.1\|WP_000206422.1\|2795687_2796743_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	3.56056e-138
NC_015761.1\|WP_000211332.1\|2805549_2807349_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_015761.1\|WP_024135103.1\|2814751_2815543_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.53214e-158
NC_015761.1\|WP_000046873.1\|2817946_2819242_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NC_015761.1\|WP_024135104.1\|2824768_2826109_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0

>NC_015761.1|WP_001143356.1|2807655_2808018_+|6-carboxytetrahydropterin-synthase-QueD
MPTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVQVKETCTAGCVYRGA
>NC_015761.1|WP_000211332.1|2805549_2807349_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQAPLTGLLPLNAEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRPDTITTLPAPVAEIPGVTLISASQTGNARRVAEALRDDLLAVNLNVTLVNAGDYKYKQIASEKLLVVVTSTQGEGEPPEEAVALHKFLFSKKAPALKNTAFAVFSLGDTSYEFFCQAGKDFDSKLAELGGKRLLDRVDADVEYQSAAAQWRARMVEVLRSRTPVMTPAQSVTSGAVNEIHTSPYTKEAPLSASLAVNQKITGRNSEKDVRHIEIDLGDSGLCYQPGDALGVWYQNDPALVNEIVELLWLKGDEPVTVNDKRLPLSEALQWHFELTVNTANIVETYATLTRSETLMPLVGDKTQLQRYAAATPIVDMLRFSPAQLEADALVGLLRPLTPRLYSIASSQAEVGNEAHITVGVVRYDIEGRARAGGASSFLADRVEEDGEVRVFIEHNDNFRLPEEPQTPVIMIGPGTGIAPFRAFMQQRAADDAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQVLLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NC_015761.1|WP_001290677.1|2803837_2805550_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKRESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERTEQKLEPRHAMLLRCRLPGGVISTTQWKAIDKFAAENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAVAENGRLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGIDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIAGVPESEKTKIEKLARDHGLMNAVTAQRENAMACVSFPTCPLAMAEAERFLPTFIDKVEAIMASHGVSDEHIVLRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELIGRWAKEREAGEGFGDFTVRAGIVRPVLDPARDFWE
>NC_015761.1|WP_001096609.1|2803019_2803754_-|phosphoadenosine-phosphosulfate-reductase
MAKLSLSALNERPKVDRVLALAETNAALETLSAEERIVWALENLPGEYVLSSSFGIQAAVSLHLVNQVYPGIPVILTDTGYLFAETYQFIDELTEKLNLNLKVYRAKESAAWQEARYGKLWEQGIEGIEKYNDINKVEPLNRALHELSAQTWFAGLRREQSGSRATLPVLAIQRGVFKVLPIIDWDNRTVFQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_015761.1|WP_001145525.1|2801975_2802929_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLHFGNQQNYMLNETRLAQLLSADKEKATHRGYWNKLQDHFTSEKQDHALEVLHGMLYGHARNEPGEMEINVEGMSKIYAFKHLQRLACPADQDLFRIQMDASQTQLLFMIGDTVISQSSIQDTLNLSENAVVKSMDRAERELFLKICEMIGSTITWHADLLQGSASTLRKEVAGNAQIKEAVYKMMRPDEAPDHRLVEWRGSLTEKEESILACINADSFDIITQFCKLGYREVQSEVSFFMIHPCITYLLHSYSPITEFKETNTAFLNNFNQDYDNYHSNKRDIDPILEEIYLTHEHSLHIGKNNCSRNILML
>NC_015761.1|WP_024135102.1|2798875_2801539_-|CRISPR-associated-helicase/endonuclease-Cas3
MLIYHYWGKSRQGEASGGDDYHLLCWHSLDVAAVGYWMVKNNIYFIDHYLKKLGLQDNEQAAQFFAWILCWHDIGKFAHSFQQLYRHEDLNIFNEPPGHYEKIPHTTLGYWLWNTWLSECPELFPPSSLSVRKSKRVMTLWMPVTTGHHGRPPDAIPEVDHFRQQDKDAAREFLLKIKALFPLITLPEAWDEDEGIAQFQQLSWFISATVVLADWTGSASHYFPRMAEKMPVEMYWQQALIKARKAITLFPTAANVSAFTGIETLFPFIQHPTPLQQKALTLDIHVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANSWLALYQPDSRPSLVLAHSARHLMDRFNQSIWSASLSGTEEPDDASPYSQGCAAWFTDSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIECQASNGNATILLSATLSQQQRDKLVAAFSRGVKRSVQAPLLGHDDYPWLTQVTQNELISQHIDTRKEVERSVNIGWLHSEASCLEYIGEAVKKGSCIAWIRNSVDDAIRIYRQLLLSKTIAAENLLLFHSRFAFHDRQRIEMQTLDLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHLRDRSGLVKTNGLDEREVPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGAIRMPQSARLLIESVYGDDVDMPAGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDFLPEKMSTRLAEESITLWLAKVVDDVLIPYAPGEHPWEMSALRVRKSWWEKHNGEFERLEGESFHRWCVEQHQNKDFAIVIVVSDSAACGYSATEGLTGKMEA
>NC_015761.1|WP_000834842.1|2797307_2798864_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKSFSLLTSCWLPVRFKDGSMGKMAPVDLADENVVDIAATRADLQGAAWQFLLGVLQCSIAPKNSARWEDIWEDGLTEPMLREALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPETPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQMYQGERQTPLWRKLWLNVMPQDAADLPLPAACDASVFPWLAATRTSEQASAITTPEHVNKLQAYWGMPRRIRLDFTTTQSGACDICGTNSDDLLSVMTVKNYGVNYDGWRHPLTPYRLPVKEGSGFFSVKPQPGGLIWRDWLGLSQENQTEANKEYPAQVVKVFNARRLKGVKAGLWGFGADFDNMKIRCWYEHHFPLLMTEGLMPDLRKATQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGDFLNLIRDLENGGEPDELLTKWRRELWLFTRRYFDDRVFTNPYESNDLKRIMTARKKYFTTSAEKQSAKAARAKKQEAAE
>NC_015761.1|WP_001028359.1|2796756_2797311_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNIVKDDHKATLRQWHEELQEKRGARASLRRSVTVNDVCLSEGFRSLLMQTHTLWKIEGQEWRFTALALTAAVAANVKTIDERQTFAAQLGQMTGNNPVMSERRFTRLSTVKTSDELLRQLRRAVKLLNGAVNLISLAEDIFRWCQEHDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEKV
>NC_015761.1|WP_000206422.1|2795687_2796743_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILMESGIDAKKAVEYVEKIASCFGKVKADKKAKDPLTNAETEQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRHDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRAASEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTDQLNVAVQRITSLHKNMNQVYDQQTDIASFDVMNQQGSMKDVLDFICA
>NC_015761.1|WP_000085113.1|2794930_2795677_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGRAADVLREAYRRYQDQFNALKLTLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NC_015761.1|WP_001199954.1|2810329_2811001_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLMPLTSLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYGVLYQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIDTCIARNWRLSMQTHKYLNIA
>NC_015761.1|WP_000036734.1|2811505_2812804_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_015761.1|WP_000210866.1|2812886_2814524_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLTDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NC_015761.1|WP_024135103.1|2814751_2815543_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLNIMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNAICAAISDKLERRHPHVFGKISADSSEEVLTRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVIDQAKLEEEMGDLLFATVNMARHLGTKAEIALQKANDKFERRFREVERIVAARGLQMTGVDLETMEEVWQEVKRQEIDL
>NC_015761.1|WP_000226832.1|2815660_2817895_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKNEGVLAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGATSGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYITTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGN
>NC_015761.1|WP_000046873.1|2817946_2819242_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPGLLPEESADVIITEDKKQFARARVSSRLNDSPERELPRCPHFGVCGGCQQQHVSVALQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCPPDKSLQMGFRQAGSSDIVNVEQCPVLVPQLEALLPRVRACLASLQGTRHLGHVELVQAGNGTLMILRHTAPLSASDKEKLERFSHSEGLSLFLAPFSEILETVIGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAADRVLDLFCGMGNFTLPLATCAASVVGVEGVPALVEKARENAIRNELHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMRHIIKLKPIRIVYVSCNPATLARDSEVLVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NC_015761.1|WP_000706495.1|2822186_2823329_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPMADGGEGTVEAMVEATAGRIVHVDVTGPLGHRVNAFYGLSGDARCAFIEMAAASGLEQVPLAQRDPLNTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMMQALGARLRDVHGNDIAQGGIGLEALASIDISGLDKRLSACRIDVACDVTNPLTGKEGASAIFGPQKGATPEMIERLDNALIRYAHLIARDLHVDVLGLVGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEERLADADLVITGEGRIDSQTLHGKVPIGVAGIAKRHNKPVIGIAGSLTADVGVVHGYGLDAVFSVIYTICTLEDALENAAENVRMTARNVAATLKTGQHLR
>NC_015761.1|WP_001275831.1|2823407_2824748_-|glucarate-dehydratase
MSAQFTTPVVTSMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNAGHTGVGEIPGGEKIRKTLEEAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQTEEKCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPNARVTLDPNGAWSLNEAIQIGKYLKGTLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPAKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>NC_015761.1|WP_024135104.1|2824768_2826109_-|glucarate-dehydratase
MNTQSSPIITDMKVIPIAGHDSMLLNIGGAHNAWFTRNIVVLTDNAGHTGVGEAPGGDVIYQTLMDAIPMVLGQEVARLNHVVQRVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGQTLNVPVCELLGPGKQRDAVTVLGYLFYIGDRAKTDLPYLDNTPGHHDWYRLRHQEALSSDAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIATVRALKKRFPEARITVDPNGAWRLDEAIALCKGLNDVLAYAEDPCGAEPGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGKPTAIDTHWIWQEGDCRLTKNPLEIKNGAIAVPDAPGLGVELDWEQVQKAHDAYKKLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH
>NC_015761.1|WP_000097020.1|2826111_2827464_-|galactarate/glucarate/glycerate-transporter-GudP
MSSLSHAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSVFTLLQGFVDIFSGFGIIVALFTLRFLVGLAESPSFPGNSRIVAAWFPAQERGTAVSIFNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIIISLIWLKVIHDPNNHPGVNKKELEYIAAGGALINMDQKSSAQKVPFSEKWGQIKQLIGSRMMVGIYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNVARKTPIVLGMLLSMVMLGCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPREISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGIHALVAVLSYLVLVGDIKRIELKPLKGQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015761_1	1.19\|2792871\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792871-2792902	32	NC_015761.1	2786872-2786903	0	1.0

1. spacer 1.19|2792871|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to position: 2786872-2786903, mismatch: 0, identity: 1.0

tgtaccacatttgcccggtgtaacgtataccc	CRISPR spacer
tgtaccacatttgcccggtgtaacgtataccc	Protospacer
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MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015761_2	2.7\|2809369\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809369-2809400	32	MT774405	CrAssphage cr115_1, complete genome	41630-41661	6	0.812
NC_015761_1	1.13\|2792505\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792505-2792536	32	NZ_CP053574	Citrobacter sp. TSA-1 plasmid unnamed1, complete sequence	129365-129396	7	0.781
NC_015761_1	1.13\|2792505\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792505-2792536	32	HE858210	Enterobacteria phage RB43, isolate RB43-GVA complete genome	77913-77944	7	0.781
NC_015761_1	1.13\|2792505\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792505-2792536	32	MT334653	Buttiauxella phage vB_ButM_GuL6, complete genome	76994-77025	7	0.781
NC_015761_1	1.13\|2792505\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792505-2792536	32	HE981739	Enterobacteria phage RB43, isolate RB43-GVA orf057::gfp complete genome	77916-77947	7	0.781
NC_015761_1	1.13\|2792505\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792505-2792536	32	NC_007023	Enterobacteria phage RB43, complete genome	78311-78342	7	0.781
NC_015761_2	2.12\|2809674\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809674-2809705	32	NZ_CP016541	Planococcus versutus strain L10.15 plasmid pPS15-1, complete sequence	46502-46533	7	0.781
NC_015761_2	2.15\|2809857\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809857-2809888	32	MK016501	Mycobacterium phage Nebkiss, complete genome	32718-32749	7	0.781
NC_015761_2	2.15\|2809857\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809857-2809888	32	NC_026590	Mycobacterium phage Gaia, complete genome	33017-33048	7	0.781
NC_015761_1	1.7\|2792139\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792139-2792170	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	1215570-1215601	8	0.75
NC_015761_1	1.7\|2792139\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792139-2792170	32	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	576811-576842	8	0.75
NC_015761_1	1.19\|2792871\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792871-2792902	32	MN694010	Marine virus AFVG_250M212, complete genome	46118-46149	8	0.75
NC_015761_2	2.8\|2809430\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809430-2809461	32	NZ_CP006589	Hymenobacter sp. APR13 plasmid pHB, complete sequence	5993-6024	8	0.75
NC_015761_2	2.12\|2809674\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809674-2809705	32	AP014314	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S31-C24, * SEQUENCING IN PROGRESS *	17995-18026	8	0.75
NC_015761_2	2.13\|2809735\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809735-2809766	32	NC_009507	Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence	13417-13448	8	0.75
NC_015761_2	2.14\|2809796\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809796-2809827	32	MT682714	Escherichia phage vB_EcoM_Lutter, complete genome	160232-160263	8	0.75
NC_015761_2	2.14\|2809796\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809796-2809827	32	MK373787	Escherichia phage vB_EcoM_G8, complete genome	159821-159852	8	0.75
NC_015761_1	1.6\|2792078\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792078-2792109	32	NZ_CP035192	Bacillus subtilis strain SRCM104011 plasmid unnamed1	27185-27216	9	0.719
NC_015761_1	1.7\|2792139\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792139-2792170	32	NC_013930	Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence	35566-35597	9	0.719
NC_015761_1	1.12\|2792444\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792444-2792475	32	AP013405	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S42-C63	20976-21007	9	0.719
NC_015761_2	2.7\|2809369\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809369-2809400	32	NZ_CP019362	Borrelia turicatae 91E135 isolate Oz1 plasmid cp31, complete sequence	13413-13444	9	0.719
NC_015761_2	2.8\|2809430\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809430-2809461	32	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	444689-444720	9	0.719
NC_015761_2	2.15\|2809857\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809857-2809888	32	MF150911	Ralstonia phage DU_RP_II, complete genome	18149-18180	9	0.719
NC_015761_2	2.15\|2809857\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809857-2809888	32	MN996301	Ralstonia phage RpY1, complete genome	34618-34649	9	0.719
NC_015761_1	1.4\|2791956\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2791956-2791987	32	NZ_CP032686	Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence	622719-622750	10	0.688
NC_015761_1	1.4\|2791956\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2791956-2791987	32	NZ_CP032691	Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence	614035-614066	10	0.688
NC_015761_1	1.7\|2792139\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792139-2792170	32	NC_007762	Rhizobium etli CFN 42 plasmid p42a, complete sequence	53241-53272	10	0.688
NC_015761_1	1.17\|2792749\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792749-2792780	32	KT962247	Cellulophaga phage phi17:2_18, complete genome	61795-61826	10	0.688
NC_015761_1	1.17\|2792749\|32\|NC_015761\|CRISPRCasFinder,CRT,PILER-CR	2792749-2792780	32	NC_021798	Cellulophaga phage phi17:2, complete genome	61795-61826	10	0.688
NC_015761_2	2.1\|2809003\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809003-2809034	32	MT884010	Escherichia phage vb_EcoM_bov22_2, complete genome	122010-122041	10	0.688
NC_015761_2	2.1\|2809003\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809003-2809034	32	MT884008	Escherichia phage vb_EcoM_bov10K2, complete genome	122009-122040	10	0.688
NC_015761_2	2.1\|2809003\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809003-2809034	32	MT884009	Escherichia phage vb_EcoM_bov11CS3, complete genome	122009-122040	10	0.688
NC_015761_2	2.1\|2809003\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809003-2809034	32	MT884011	Escherichia phage vb_EcoM_bov25_3, complete genome	122009-122040	10	0.688
NC_015761_2	2.1\|2809003\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809003-2809034	32	KT001917	Escherichia phage Murica, complete genome	89483-89514	10	0.688
NC_015761_2	2.2\|2809064\|32\|NC_015761\|PILER-CR,CRISPRCasFinder,CRT	2809064-2809095	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	242035-242066	10	0.688

1. spacer 2.7|2809369|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to MT774405 (CrAssphage cr115_1, complete genome) position: , mismatch: 6, identity: 0.812

ccgaagc---aacaaatgcaacgtttaattattgg	CRISPR spacer
---aaacttaaacaaatgaaacttttaattattgg	Protospacer
   **.*   ******** *** ************

2. spacer 1.13|2792505|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053574 (Citrobacter sp. TSA-1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

attaattccgttagtatatcgctgaatatatc	CRISPR spacer
gttgtgcccgttagtatatctctgaatatatt	Protospacer
.**.  .************* **********.

3. spacer 1.13|2792505|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to HE858210 (Enterobacteria phage RB43, isolate RB43-GVA complete genome) position: , mismatch: 7, identity: 0.781

attaattccgttagtatatcgctgaatatatc	CRISPR spacer
catcacgccgtgagtatatcgttgaatatatc	Protospacer
  * *. **** *********.**********

4. spacer 1.13|2792505|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to MT334653 (Buttiauxella phage vB_ButM_GuL6, complete genome) position: , mismatch: 7, identity: 0.781

attaattccgttagtatatcgctgaatatatc	CRISPR spacer
catcacgccgtgagtatatcgttgaatatatc	Protospacer
  * *. **** *********.**********

5. spacer 1.13|2792505|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to HE981739 (Enterobacteria phage RB43, isolate RB43-GVA orf057::gfp complete genome) position: , mismatch: 7, identity: 0.781

attaattccgttagtatatcgctgaatatatc	CRISPR spacer
catcacgccgtgagtatatcgttgaatatatc	Protospacer
  * *. **** *********.**********

6. spacer 1.13|2792505|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to NC_007023 (Enterobacteria phage RB43, complete genome) position: , mismatch: 7, identity: 0.781

attaattccgttagtatatcgctgaatatatc	CRISPR spacer
catcacgccgtgagtatatcgttgaatatatc	Protospacer
  * *. **** *********.**********

7. spacer 2.12|2809674|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016541 (Planococcus versutus strain L10.15 plasmid pPS15-1, complete sequence) position: , mismatch: 7, identity: 0.781

tacaaat-agaagattaggattttcaggaataa	CRISPR spacer
-gtaagtcataagattaggattttcagaaaaaa	Protospacer
 ..**.* * *****************.** **

8. spacer 2.15|2809857|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to MK016501 (Mycobacterium phage Nebkiss, complete genome) position: , mismatch: 7, identity: 0.781

ggatcaacctgacgcaacgcacggttaatggc	CRISPR spacer
gtaacaacctgacgcaacgcaagcttatcgga	Protospacer
* * ***************** * *** .**

9. spacer 2.15|2809857|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to NC_026590 (Mycobacterium phage Gaia, complete genome) position: , mismatch: 7, identity: 0.781

ggatcaacctgacgcaacgcacggttaatggc	CRISPR spacer
gtaacaacctgacgcaacgcaagcttatcgga	Protospacer
* * ***************** * *** .**

10. spacer 1.7|2792139|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ttggctggaatgggggccgatggcaacctgta	CRISPR spacer
atggccggaatgggggtcgatggccgccagcg	Protospacer
 ****.**********.******* .** *..

11. spacer 1.7|2792139|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 8, identity: 0.75

ttggctggaatgggggccgatggcaacctgta	CRISPR spacer
atggccggaatgggggtcgatggccgccagcg	Protospacer
 ****.**********.******* .** *..

12. spacer 1.19|2792871|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to MN694010 (Marine virus AFVG_250M212, complete genome) position: , mismatch: 8, identity: 0.75

tgtaccacatttgcccggtgtaacgtataccc	CRISPR spacer
tgtaccaccttttcccggtgtaacagtttctt	Protospacer
******** *** ***********.  * *..

13. spacer 2.8|2809430|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006589 (Hymenobacter sp. APR13 plasmid pHB, complete sequence) position: , mismatch: 8, identity: 0.75

aatcaagttttacacgctggccgagggcgaac	CRISPR spacer
cttcaagtttcccacgctggccgaggaagtag	Protospacer
  ********. **************. * *

14. spacer 2.12|2809674|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to AP014314 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S31-C24, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

tacaaatagaagattaggattttcaggaataa	CRISPR spacer
agttaatagaagattatgattttcaagaggaa	Protospacer
 .. ************ ********.**. **

15. spacer 2.13|2809735|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 8, identity: 0.75

accagcccagaaatcagcacgtcctgaattgt--	CRISPR spacer
tccagccgggaaatcagcacgtcc--agctgcag	Protospacer
 ****** .***************  *..**.

16. spacer 2.14|2809796|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to MT682714 (Escherichia phage vB_EcoM_Lutter, complete genome) position: , mismatch: 8, identity: 0.75

ttaattaaagtctcttcattatactgattaga	CRISPR spacer
ttaattaaagtatctttattatatgaatgatt	Protospacer
*********** ****.******. .** *

17. spacer 2.14|2809796|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to MK373787 (Escherichia phage vB_EcoM_G8, complete genome) position: , mismatch: 8, identity: 0.75

ttaattaaagtctcttcattatactgattaga	CRISPR spacer
ttaattaaagtatctttattatatgaatgatt	Protospacer
*********** ****.******. .** *

18. spacer 1.6|2792078|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035192 (Bacillus subtilis strain SRCM104011 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

ggcgcga----attgatttaaacggcaactggattc	CRISPR spacer
----tgatatttttgattttaacggcagctggatta	Protospacer
    .**     ******* *******.*******

19. spacer 1.7|2792139|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to NC_013930 (Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence) position: , mismatch: 9, identity: 0.719

ttggctggaatgggggccgatggcaacctgta	CRISPR spacer
cctgatggaatgggggccgctgggaaccgatc	Protospacer
.. * ************** *** **** .*

20. spacer 1.12|2792444|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to AP013405 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S42-C63) position: , mismatch: 9, identity: 0.719

gttcatttgcgccatcccaccattgagaaacg	CRISPR spacer
cactatttgcaccatcccaccattgtgatata	Protospacer
  ..******.************** ** *..

21. spacer 2.7|2809369|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019362 (Borrelia turicatae 91E135 isolate Oz1 plasmid cp31, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaagcaacaaatgcaacgtttaattattgg	CRISPR spacer
ataaatgaacaaaagcaacgtttatttatttt	Protospacer
 ..**  ****** ********** *****

22. spacer 2.8|2809430|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aatcaagttttacacgctggccgagggcgaac	CRISPR spacer
agccaaggttaacacgctggccgaggaccttg	Protospacer
*..**** ** ***************.*

23. spacer 2.15|2809857|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to MF150911 (Ralstonia phage DU_RP_II, complete genome) position: , mismatch: 9, identity: 0.719

ggatcaacctgacgcaacgcacggttaatggc	CRISPR spacer
tcgtcaaacagacgcaacgcacggttagcgcg	Protospacer
  .**** * *****************..*

24. spacer 2.15|2809857|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to MN996301 (Ralstonia phage RpY1, complete genome) position: , mismatch: 9, identity: 0.719

ggatcaacctgacgcaacgcacggttaatggc	CRISPR spacer
tcgtcaaacagacgcaacgcacggttagcgcg	Protospacer
  .**** * *****************..*

25. spacer 1.4|2791956|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 10, identity: 0.688

tgatatccattgacacccctccgtattgaatt	CRISPR spacer
gaatatgcattgacacccctcggtaggtcgct	Protospacer
 .**** ************** ***    ..*

26. spacer 1.4|2791956|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 10, identity: 0.688

tgatatccattgacacccctccgtattgaatt	CRISPR spacer
gaatatgcattgacacccctcggtaggtcgct	Protospacer
 .**** ************** ***    ..*

27. spacer 1.7|2792139|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to NC_007762 (Rhizobium etli CFN 42 plasmid p42a, complete sequence) position: , mismatch: 10, identity: 0.688

ttggctggaatgggggccgatggcaacctgta	CRISPR spacer
tcccgctgaatgtgggacgatggcaacctgcg	Protospacer
*.   . ***** *** *************..

28. spacer 1.17|2792749|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to KT962247 (Cellulophaga phage phi17:2_18, complete genome) position: , mismatch: 10, identity: 0.688

tttttgatttttataacgttggagtcgcccaa	CRISPR spacer
actttgattttaataacgttagagttaaaaat	Protospacer
 .********* ********.****..   *

29. spacer 1.17|2792749|32|NC_015761|CRISPRCasFinder,CRT,PILER-CR matches to NC_021798 (Cellulophaga phage phi17:2, complete genome) position: , mismatch: 10, identity: 0.688

tttttgatttttataacgttggagtcgcccaa	CRISPR spacer
actttgattttaataacgttagagttaaaaat	Protospacer
 .********* ********.****..   *

30. spacer 2.1|2809003|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to MT884010 (Escherichia phage vb_EcoM_bov22_2, complete genome) position: , mismatch: 10, identity: 0.688

gagggcacccaaccgcagtatttttcatctgc	CRISPR spacer
gtcagcaccccaccgtagtatttttcaatcag	Protospacer
*  .****** ****.*********** ...

31. spacer 2.1|2809003|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to MT884008 (Escherichia phage vb_EcoM_bov10K2, complete genome) position: , mismatch: 10, identity: 0.688

gagggcacccaaccgcagtatttttcatctgc	CRISPR spacer
gtcagcaccccaccgtagtatttttcaatcag	Protospacer
*  .****** ****.*********** ...

32. spacer 2.1|2809003|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to MT884009 (Escherichia phage vb_EcoM_bov11CS3, complete genome) position: , mismatch: 10, identity: 0.688

gagggcacccaaccgcagtatttttcatctgc	CRISPR spacer
gtcagcaccccaccgtagtatttttcaatcag	Protospacer
*  .****** ****.*********** ...

33. spacer 2.1|2809003|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to MT884011 (Escherichia phage vb_EcoM_bov25_3, complete genome) position: , mismatch: 10, identity: 0.688

gagggcacccaaccgcagtatttttcatctgc	CRISPR spacer
gtcagcaccccaccgtagtatttttcaatcag	Protospacer
*  .****** ****.*********** ...

34. spacer 2.1|2809003|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to KT001917 (Escherichia phage Murica, complete genome) position: , mismatch: 10, identity: 0.688

gagggcacccaaccgcagtatttttcatctgc	CRISPR spacer
gtcagcaccccaccgtagtatttttcaatcag	Protospacer
*  .****** ****.*********** ...

35. spacer 2.2|2809064|32|NC_015761|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

gtcagagccgttaccaaaggatgatccggaag	CRISPR spacer
agttctgccgtgaccaaaggttgatccggcac	Protospacer
. .   ***** ******** ******** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

848176 : 858832

Salmonella_phage(75.0%)

plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000177407.1\|848176_848536_+	GPW/gp25 family protein	E5G6N7	Salmonella_phage	1.8e-58	96.6
WP_000268334.1\|848522_849431_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.5e-157	98.0
WP_001086799.1\|849423_850029_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	5.0e-114	97.0
WP_001285260.1\|851337_852495_+	acyltransferase	A0A088CPR9	Enterobacteria_phage	1.9e-29	29.1
WP_000584703.1\|852716_853181_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.0e-18	42.0
WP_162470497.1\|853513_853861_-	hypothetical protein	NA	NA	NA	NA
WP_001280962.1\|854941_855244_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	2.5e-45	100.0
WP_000763316.1\|855258_855378_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.8e-15	100.0
WP_000980410.1\|858346_858832_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.2e-73	90.7

DBSCAN-SWA_2

1007222 : 1031234

Salmonella_phage(50.0%)

holin,integrase

attL 1007057:1007116|attR 1036199:1036276

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1007057:1007116	attL	NA	NA	NA	NA
WP_015702793.1\|1007222_1008242_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.3e-93	53.5
WP_000196400.1\|1008242_1008467_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000846936.1\|1009154_1009961_-	DUF3037 domain-containing protein	NA	NA	NA	NA
WP_000097141.1\|1009957_1010806_-	hypothetical protein	NA	NA	NA	NA
WP_000214259.1\|1010977_1011445_-	helix-turn-helix domain-containing protein	K7PHG0	Enterobacteria_phage	4.7e-67	85.2
WP_000145711.1\|1011458_1011686_+	helix-turn-helix domain-containing protein	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
WP_015702794.1\|1011651_1012026_+	hypothetical protein	S4TTD7	Salmonella_phage	3.3e-63	98.4
WP_000024047.1\|1012117_1013023_+	replication protein	A0A0M5M7Y1	Salmonella_phage	1.3e-174	99.0
WP_000788824.1\|1013019_1013712_+	hypothetical protein	G8C7U6	Escherichia_phage	4.3e-77	58.9
WP_000025837.1\|1013725_1013983_+	DUF4752 family protein	T1S9K2	Salmonella_phage	1.8e-36	89.4
WP_024134978.1\|1014992_1015319_+	hypothetical protein	NA	NA	NA	NA
WP_000085729.1\|1015605_1016037_-	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	9.7e-27	55.8
WP_000409416.1\|1016159_1016327_+	hypothetical protein	G9L6D7	Escherichia_phage	6.6e-16	75.5
WP_015702797.1\|1016400_1017228_+	phage antirepressor N-terminal domain-containing protein	I6S627	Salmonella_phage	2.7e-57	52.2
WP_000128278.1\|1017300_1018047_+	hypothetical protein	A0A0P0ZDC0	Stx2-converting_phage	4.5e-64	61.8
WP_001217667.1\|1018232_1018466_+	DinI family protein	H6WRY5	Salmonella_phage	7.3e-37	98.7
WP_015702798.1\|1018582_1018831_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	3.6e-42	98.8
WP_000929795.1\|1018865_1019468_+	DUF1367 family protein	S4TTI0	Salmonella_phage	1.3e-109	99.0
WP_000793789.1\|1019856_1020528_+	antitermination protein	I6PDF8	Cronobacter_phage	1.5e-63	57.1
WP_000211402.1\|1020796_1021369_+	ORF6N domain-containing protein	A0A2R2Z302	Escherichia_phage	3.5e-40	71.1
WP_000151608.1\|1021510_1022011_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_000509712.1\|1022021_1022201_-	hypothetical protein	NA	NA	NA	NA
WP_141024934.1\|1023130_1023559_+	pertussis toxin	NA	NA	NA	NA
WP_141024936.1\|1023629_1024331_+	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	5.0e-81	66.0
WP_001294877.1\|1024568_1024958_+\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	1.4e-40	71.8
WP_000226306.1\|1024944_1025226_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.3e-36	80.6
WP_000372743.1\|1025225_1025840_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	2.7e-107	92.6
WP_001050816.1\|1025836_1026379_+	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_001109263.1\|1026640_1027171_+	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	9.9e-90	96.6
WP_001222152.1\|1027570_1027981_+	hypothetical protein	NA	NA	NA	NA
WP_000819054.1\|1028069_1028375_+	hypothetical protein	Q8HA83	Salmonella_phage	6.2e-20	53.1
WP_001111091.1\|1028477_1028828_+	HNH endonuclease	Q8HA82	Salmonella_phage	8.1e-48	74.8
WP_000480907.1\|1028912_1029170_+	hypothetical protein	NA	NA	NA	NA
WP_015702803.1\|1029171_1030284_+	hypothetical protein	NA	NA	NA	NA
WP_141024939.1\|1030730_1031234_+	T3SS effector NleG family protein	B6DZB9	Enterobacteria_phage	1.7e-19	45.6
1036199:1036276	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2142771 : 2151361

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195328.1\|2142771_2144805_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.8e-55	27.4
WP_000703144.1\|2145072_2145531_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	7.1e-52	69.9
WP_000950424.1\|2145669_2146140_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.1e-76	91.7
WP_000598645.1\|2146186_2146906_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272843.1\|2146902_2148588_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.6e-274	89.3
WP_001240383.1\|2148810_2149551_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.3e-100	88.1
WP_001234243.1\|2149610_2149718_+	protein YohO	NA	NA	NA	NA
WP_000824740.1\|2149698_2150430_-	ABC transporter permease	NA	NA	NA	NA
WP_000569161.1\|2150413_2151361_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	6.2e-10	27.5

DBSCAN-SWA_4

3078218 : 3141078

Salmonella_phage(53.33%)

terminase,integrase,tail,lysis,plate,portal,holin,head,tRNA,capsid

attL 3084538:3084586|attR 3115234:3115282

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001264346.1\|3078218_3079232_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.5e-107	58.3
WP_001144069.1\|3079469_3079685_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_000918858.1\|3079988_3081734_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.7e-72	38.4
WP_001519776.1\|3081883_3083731_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_000237774.1\|3083875_3084382_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
3084538:3084586	attL	NA	NA	NA	NA
WP_000468307.1\|3084740_3084959_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	9.5e-39	98.6
WP_000627825.1\|3085025_3086195_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	1.9e-210	97.4
WP_000978861.1\|3086191_3086677_-\|tail	phage tail protein	Q6K1G5	Salmonella_virus	1.0e-85	100.0
WP_000069527.1\|3086691_3089133_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	94.1
WP_085984508.1\|3089125_3089281_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
WP_001029727.1\|3089277_3089613_-\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
WP_001207675.1\|3089675_3090194_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
WP_001279032.1\|3090209_3091397_-\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	5.8e-223	99.5
WP_000122994.1\|3091531_3092080_-\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	1.7e-100	99.5
WP_000104701.1\|3092092_3094069_-\|tail	tail fiber protein	S4TP62	Salmonella_phage	0.0e+00	98.6
WP_001000071.1\|3094079_3094610_-\|tail	phage tail protein I	Q6K1H3	Salmonella_virus	7.8e-103	98.3
WP_000246675.1\|3094602_3095511_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.3e-158	99.0
WP_000127150.1\|3095517_3095865_-	GPW/gp25 family protein	A0A0M4RE59	Salmonella_phage	2.1e-56	98.3
WP_001094753.1\|3095861_3096503_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	3.5e-113	98.1
WP_001293103.1\|3096571_3097021_-	phage virion morphogenesis protein	A0A0M3UL83	Salmonella_phage	2.5e-73	99.3
WP_001169076.1\|3097013_3097481_-\|tail	phage tail protein	S4TTA5	Salmonella_phage	2.5e-84	99.4
WP_001394645.1\|3097443_3097617_-	hypothetical protein	S4TNY4	Salmonella_phage	2.8e-25	98.2
WP_000866102.1\|3097588_3098002_-\|lysis	LysB family phage lysis regulatory protein	S4TRW3	Salmonella_phage	2.6e-45	100.0
WP_001144116.1\|3097998_3098496_-	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	1.2e-92	99.4
WP_000134659.1\|3098482_3098779_-\|holin	phage holin family protein	S4TP56	Salmonella_phage	4.4e-47	100.0
WP_015703020.1\|3098782_3098986_-\|tail	tail protein X	A0A0M3ULF4	Salmonella_phage	4.0e-31	98.5
WP_000214255.1\|3098985_3099492_-\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.3e-91	100.0
WP_000203474.1\|3099585_3100335_-\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	1.8e-113	88.0
WP_001248604.1\|3100338_3101406_-\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	2.3e-178	89.5
WP_001085936.1\|3101481_3102336_-\|capsid	capsid scaffolding protein	S4TP53	Salmonella_phage	8.9e-157	98.6
WP_000156054.1\|3102501_3104271_+\|terminase	terminase ATPase subunit family protein	S4TT96	Salmonella_phage	0.0e+00	99.8
WP_000517958.1\|3104270_3105317_+\|portal	phage portal protein	S4TNX7	Salmonella_phage	4.4e-190	99.4
WP_000338485.1\|3105394_3106399_+	hypothetical protein	NA	NA	NA	NA
WP_000033213.1\|3106778_3107327_-	hypothetical protein	NA	NA	NA	NA
WP_000381894.1\|3107437_3108169_-	hypothetical protein	Q37850	Escherichia_phage	5.1e-129	93.8
WP_000373435.1\|3108251_3108692_-	DinI family protein	A0A218M4I0	Erwinia_phage	2.6e-67	94.2
WP_000503833.1\|3108809_3111029_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	94.6
WP_153655389.1\|3111054_3111648_+	hypothetical protein	NA	NA	NA	NA
WP_000752604.1\|3111669_3111894_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	6.5e-35	100.0
WP_001246236.1\|3111893_3112121_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	2.6e-31	98.7
WP_000085639.1\|3112190_3112391_-	hypothetical protein	A0A0M5M7U3	Salmonella_phage	2.3e-31	98.5
WP_000920168.1\|3112377_3112605_-	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	2.1e-36	97.3
WP_000459332.1\|3112612_3113122_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	6.2e-89	98.8
WP_000135597.1\|3113152_3113416_-	hypothetical protein	A0A218M4I5	Erwinia_phage	3.3e-38	89.7
WP_001217271.1\|3113546_3114125_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	3.5e-64	63.0
WP_000218395.1\|3114124_3115162_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.1e-198	97.1
WP_000716773.1\|3115399_3115735_-	hypothetical protein	NA	NA	NA	NA
3115234:3115282	attR	NA	NA	NA	NA
WP_024135121.1\|3115977_3116346_+	C40 family peptidase	NA	NA	NA	NA
WP_001258712.1\|3116345_3116849_+	YbjP/YqhG family protein	NA	NA	NA	NA
WP_000213737.1\|3117159_3117927_-	siderophore-interacting protein	NA	NA	NA	NA
WP_000983440.1\|3118156_3118804_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_000478452.1\|3118800_3120366_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.0e-12	33.9
WP_000094659.1\|3120710_3122231_-	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	8.4e-33	39.1
WP_079775117.1\|3122660_3124040_+	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	3.5e-30	28.3
WP_000122474.1\|3124208_3126227_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_000019978.1\|3126320_3127457_-	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
WP_000202735.1\|3127542_3128040_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_000625353.1\|3128191_3128884_+	vancomycin high temperature exclusion protein	NA	NA	NA	NA
WP_024135122.1\|3128971_3129970_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_001098831.1\|3130239_3131208_+	TerC family protein	I7HPH5	Enterobacteria_phage	7.2e-38	34.9
WP_000235302.1\|3131461_3132706_+	serine/threonine transporter SstT	NA	NA	NA	NA
WP_001199406.1\|3132795_3134283_-	altronate dehydratase	NA	NA	NA	NA
WP_000187429.1\|3134297_3135710_-	glucuronate isomerase	NA	NA	NA	NA
WP_001226461.1\|3136180_3137479_+	MFS transporter	NA	NA	NA	NA
WP_000406481.1\|3137643_3138420_+	transcriptional regulator ExuR	NA	NA	NA	NA
WP_000422141.1\|3138768_3139431_+	DedA family protein	NA	NA	NA	NA
WP_000917519.1\|3139434_3139818_+	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_000877295.1\|3139961_3140330_+	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_000031219.1\|3140371_3140677_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000785625.1\|3140679_3141078_+\|holin	phage holin family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015761

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection