CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_014932	Bartonella clarridgeiae 73, complete genome	2 crisprs	cas3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_014932_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014932_1

269471-269595

Orphan

Consensus_repeat	Method
TTATCTAAAATATCTTCATAAATGTCTGTTTGAGAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014932_1

>merge|NC_014932|1|269471-269595|CRISPRCasFinder
TTATCTAAAATATCTTCATAAATGTCTGTTTGAGAAGACGTTTGAAGGGGCTGGTTGTATCCGCGAGCCTCCATTTAAATTTTCAGATTATCTAAAATATCTTCATAAATGTTTGTTTGAGAAGA

>NC_014932|1|1|269471-269595|CRISPRCasFinder
TTATCTAAAATATCTTCATAAATGTCTGTTTGAGAAGA	CGTTTGAAGGGGCTGGTTGTATCCGCGAGCCTCCATTTAAATTTTCAGA
TTATCTAAAATATCTTCATAAATGTTTGTTTGAGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_014932.1\|WP_013544605.1\|281433_282756_+\|BID-domain-containing-T4SS-effector	unknown	unknown	gnl\|CDD\|375969
NC_014932.1\|WP_013544606.1\|282838_283459_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|167205
NC_014932.1\|WP_013544593.1\|266397_267771_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|226102
NC_014932.1\|WP_013544601.1\|278248_279106_-\|YopJ-family-type-III-secretion-system-effector-serine/threonine-acetyltransferase	unknown	unknown	gnl\|CDD\|185269
NC_014932.1\|WP_013544611.1\|285364_286996_+\|BID-domain-containing-T4SS-effector	unknown	unknown	gnl\|CDD\|182396
NC_014932.1\|WP_155914824.1\|260499_260670_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223441
NC_014932.1\|WP_013544602.1\|279693_279810_+\|DUF3380-domain-containing-protein	unknown	unknown	gnl\|CDD\|378741
NC_014932.1\|WP_013544588.1\|260727_261444_+\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|238694
NC_014932.1\|WP_013544589.1\|262014_262914_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|184558
NC_014932.1\|WP_013544590.1\|263233_265114_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|225529
NC_014932.1\|WP_026501075.1\|276251_277895_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NC_014932.1\|WP_013544598.1\|271778_272888_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_014932.1\|WP_013544594.1\|268114_268348_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NC_014932.1\|WP_026501073.1\|257383_258811_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_014932.1\|WP_013544591.1\|265206_265365_-\|hypothetical-protein	unknown	unknown	unknown
NC_014932.1\|WP_013544586.1\|258821_260105_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NC_014932.1\|WP_013544607.1\|283494_284301_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_014932.1\|WP_049785180.1\|281067_281340_+\|hypothetical-protein	unknown	unknown	unknown
NC_014932.1\|WP_013544592.1\|265587_266310_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NC_014932.1\|WP_013544599.1\|272920_276064_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911

Protein	Function_ID	Function_description	E-value
NC_014932.1\|WP_013544605.1\|281433_282756_+\|BID-domain-containing-T4SS-effector	gnl\|CDD\|375969	pfam18543, ID, Intracellular delivery domain. This is a C-terminal domain found in BepA proteins from Bartonella henselae. It is a type IV secretion system (T4SS) effector protein. BepA from Bartonella henselae is composed of an N-terminal Fic domain and a C-terminal Bartonella intracellular delivery (ID) domain, the latter being responsible for T4SS-mediated translocation into host cells. The ID domain of BepA mediates inhibition of apoptosis and exhibits an OB (oligonucleotide/oligosaccharide binding)-fold.	7.3474e-11
NC_014932.1\|WP_013544606.1\|282838_283459_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|167205	PRK01295, PRK01295, phosphoglyceromutase; Provisional.	1.22294e-144
NC_014932.1\|WP_013544593.1\|266397_267771_+\|glutamate--cysteine-ligase	gnl\|CDD\|226102	COG3572, GshA, Gamma-glutamylcysteine synthetase [Coenzyme metabolism].	0
NC_014932.1\|WP_013544601.1\|278248_279106_-\|YopJ-family-type-III-secretion-system-effector-serine/threonine-acetyltransferase	gnl\|CDD\|185269	PRK15371, PRK15371, YopJ family type III secretion system effector serine/threonine acetyltransferase.	2.42907e-116
NC_014932.1\|WP_013544611.1\|285364_286996_+\|BID-domain-containing-T4SS-effector	gnl\|CDD\|182396	PRK10347, PRK10347, putative adenosine monophosphate-protein transferase Fic.	1.30996e-12
NC_014932.1\|WP_155914824.1\|260499_260670_+\|hypothetical-protein	gnl\|CDD\|223441	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism].	0.000205519
NC_014932.1\|WP_013544602.1\|279693_279810_+\|DUF3380-domain-containing-protein	gnl\|CDD\|378741	pfam11860, Muraidase, N-acetylmuramidase. Endolysins are bacteriophage encoded proteins synthesized at the end of the lytic infection cycle. They degrade the peptidoglycan (PG) of the host bacterium to allow viral progeny release. This domain family is found in bacteria and viruses. It is also found associated with pfam01471. One of the family members is the modular Gp110 endolysin found in the Salmonella phage. This domain represents the catalytic region found in the C-terminal of Gp110. It has been demonstrated to have N-acetylmuramidase (lysozyme) activity cleaving the beta-(1,4) glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues in the sugar backbone of the PG. Furthermore, sequence alignments containing this domain show that the Gp110 E101 residue is conserved (suggesting that is is the catalytic residue), and followed by serine (a common feature in lysozymes). The structure of endolysins varies depending on their origin. In general, most of the endolysins from phages infecting Gram-positive bacteria have a modular structure consisting of one or two N-terminal enzymatic active domains (EADs) and a C-terminal cell wall binding domain (CBD) separated by a short linker. In silico analysis indicate that this endolysin has a modular structure harboring this EAD family at the C-terminus and a PG_binding_1 CBD at the N-terminus.	7.73815e-06
NC_014932.1\|WP_013544588.1\|260727_261444_+\|6-phosphogluconolactonase	gnl\|CDD\|238694	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.	5.4917e-68
NC_014932.1\|WP_013544589.1\|262014_262914_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|184558	PRK14188, PRK14188, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	8.89911e-178
NC_014932.1\|WP_013544590.1\|263233_265114_+\|AsmA-family-protein	gnl\|CDD\|225529	COG2982, AsmA, Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane].	1.93076e-34
NC_014932.1\|WP_026501075.1\|276251_277895_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NC_014932.1\|WP_013544598.1\|271778_272888_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.59636e-60
NC_014932.1\|WP_013544594.1\|268114_268348_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	2.25182e-12
NC_014932.1\|WP_026501073.1\|257383_258811_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.60253e-168
NC_014932.1\|WP_013544586.1\|258821_260105_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	3.74268e-71
NC_014932.1\|WP_013544607.1\|283494_284301_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	3.15454e-111
NC_014932.1\|WP_013544592.1\|265587_266310_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	1.1781e-74
NC_014932.1\|WP_013544599.1\|272920_276064_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0

>NC_014932.1|WP_013544594.1|268114_268348_-|30S-ribosomal-protein-S21
MQVLVRDNNVDQALRALKKKMQREGIFREMKMRGYYEKPSEKRAREKAEAIRRTHKLARKHAQREGLISGGRTFPVR
>NC_014932.1|WP_013544593.1|266397_267771_+|glutamate--cysteine-ligase
MALDTTDESEINNLDSLVGYFEEGCKAEDDWCIGTEHEKFPFYVDGFRPVPYEGTKGIRVLLEKMQEVLGWKAVLDEGNIIGLLGSVDQGAISLEPGGQFELSGAPLKTIGNTYCEVMAHLELLKKVSQPLGICFLGMGASPKWTLDETPRMPKSRYQIMTNYMPKVGHNGVDMMYRTATIQVNLDFSSETDMRRKMQVSMKLQSIATALFASSPFTEGKPNGFLSWRSHVWRNTDNQRTGILPFVFSERFGFSDYVEWALDVPMYFVVRDGHYYDCTHITFRQFMNGALRRQIADSTPAMGDWTNHLSTLFPEVRLKRFLEMRGADGGSLQHICALSAFWVGLLYDSEALNEAEALTKDWCFEEVLEMHTRVAKEGLKTPFRQTMILELARQVLAISRKGLKNRQQYDTGGFDETDFLTPLEEVVAIGQTNADKLLSNYHSIWGKSVDRVFLEYTY
>NC_014932.1|WP_013544592.1|265587_266310_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MRVNYKLKRLFVRQLLALNKEIVIEGQQASYLMHVLRMKEGAKILLFNGQDGEWLAKLTFIKKKFVVVRLINQERLQTKSSDLFYCFAPLKYMRLDYMIQKAVEMGASVLHPIITHYTQVTRINMARIEANIIEAAEQCGILSLPKCAPAVPLKTFLENWDETHALFFCDELSESYNTIPLFKKHRTTPLGVLIGPEGGFSEEERVFLKKYPFVFSVSLGPRILRADTAAVAALALVNAI
>NC_014932.1|WP_013544591.1|265206_265365_-|hypothetical-protein
MSFKKATVITIITILGFILVTVGIGSVGANEKRVIIHDGYGISTHFNTHTPA
>NC_014932.1|WP_013544590.1|263233_265114_+|AsmA-family-protein
MCIKIIKFLSGIFIAIVSLGGAAVIIFPYIVSTDAIRIRLAQDLSVWTGYNVQLRDPPRLKIFPYPKAFLSGVTLTPKIESIAPLMEVESIEVDLSLVSLLGGHISFSETRVMYPKFVMDKPVKTISDFFDTLLRSQGALGLAIQSAREIIKHNPDNPDVASLLNQPFGRIVIENGTLIYRDGISDVMEKITGLNASIDWPGLTQAVQFRAKARWHGELTELLINADQALFLLAGGKSSLKVSFNSVRGGITFKGQAQLSEYYIFDGKLSLRFPGWDQTVAWIGGNQFWGNGLKIPIVWESHFLAQPARIRMNNIIFTIGTANARGALEFDFKNHVPVLIGSLGFDKLDFNILKSLFFCSEKENEFFDVAFLNRIGLDIRLSAPQAKIGDIGLTDLAAAIQIKNGHGIFDLGNVNIFGGSIQSNIQIIPDGKRANIKGSASGTSVDVQAISLALGLSPLLQAKTNFIMTMQMFPNCWSKILTQMQGQLTLNMSSGRLVGYNLNDLQSKLSENEQFLLMNNQKLSTDFDRLNIKAKLSDGVISVTEALMHTADWNLSVHKAIETFVTKGERNDLILRAKLQKNNRSETICKDIECLTNSLVQPLVFSFSPAEKVFGNFFVKKNITEN
>NC_014932.1|WP_013544589.1|262014_262914_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MDNIIDGKQLAEDILVKVKNETKKLHKNHTIQPGIAVIIVGDDPASQIYVSSKSKKAEECGFLSIKHVMSKETQEKELLKLIETLNSDPKIHGILVQLPLPAHINTNNITQTIAVHKDVDGFHYINIGKLTANVFEDTIIPCTPAGVMMMIQQKCGKDLSGLDAVIVGRSNIVGKPMAALLTAANATVTIAHSRTRDLDEVCRSADILVVAVGRPKMIKKGWVKTGAIVIDVGINRIATSGKNTTKSHIVGDVDFEEVREKASAITPVPGGVGPMTIAMLMVNTLKAAARAHKLPVPEF
>NC_014932.1|WP_013544588.1|260727_261444_+|6-phosphogluconolactonase
MYEMNINRFETPSALALALTDRVAAELSVSILERKQAILAVSGGKTPELFFHYLSKVDIDWQNIIITLVDERFVSVSDERSNEYCVRRHLLQNFAAKARFVGLYHKAVTAELAAFSAANRVNTLPMPFDVTVLGMGIDGHTASFFPDSDRLEQALDLQSQALVLPIYARSAAEPRLTLTLPVIIQSRFIALHFEGSQKYACFEEACRNGSEMEIPIRAVLHHAHHLVQVYWSPAENEI
>NC_014932.1|WP_155914824.1|260499_260670_+|hypothetical-protein
MLVNAYWLMVCAENKTLFVHRDKVVWYWIDRILKEWKMIKSSVHWHNSGSLRGNLL
>NC_014932.1|WP_013544586.1|258821_260105_+|FAD-binding-oxidoreductase
MIDYNPISPGYSWYEDTLEERPLYPFVDEKAQCDVVIIGGGFTGLSAAYHLAKNGVSVILCEASRFGDGASGRNGGQLGTGQRQWVETLEKKYGFERSKALFDLAEEAKRDILSWCTRPDCKIDFMIGQLSVIHKKREIIAYQQHAETLQRYGYSSLTFMDKNETAERLGSSFYHGGLYDAETGHINPLKLVVWLAKRAKKAGAKLYEKTQITGIKRKGNQCIVITERTNITAENVLLATNAYKLGLQHFIEKNIVSIRSYIGATEPLPKHSSILSEGEAVDDSRFMVRYFRKSMDNRLLFGGVESYDYRYPVNLNERIRRQVIEIYPHLRSINLTHCWGATVAITVERMPYVRQIMPGVTYCGGYSGHGVMLAPFIGKLYAEWLCGKHERFAYFQDLKISSFPGGKFLRYPLIFLAMNWFSLMDHF
>NC_014932.1|WP_026501073.1|257383_258811_+|glutamine-synthetase
MTVKNSEQMKNENCKPISNFLENLRGVKDWEQVSQWLAFRNVEDIECITPDQAGVARGKMMLSKKLTSDTSLALPSSVFMSTISGNYPEDGNGFEYPKADGDLRLEPDLSTLTIVPWEEAPTAQVICDLIYQDGQSVEYTPRNVLRTVIDFYTQMGLKPVIAPEIEFYFVQKNPDPDYPLVPPVGRSGRSIGGGQGYSIAGVNEFDEVIDDIYQFSEAQGLEIDTLIHEEGAGQFEINLRHGDPIELADQVFMFKRTIREAALKHNMYATFMAKPIQRQPGSAMHIHQSVIDQETGSNIFTEEDGEESIYFRYFIGGLQRHMAGALVMLAPYVNSYRRLMPGISAPVNLRWGYDNRTTAFRVPRSAPQGRRVENRIPSSDANPYLAFAASLACGLIGLQQKLEPDKPTKKTVNADNIELPRGLIEAVNLFEQDKALRAILGDTFVNTYAAIKRQEFEIFMEVISPWEREYLLLNV
>NC_014932.1|WP_013544598.1|271778_272888_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MGLLKKTVPFVLLAFVLIFSYCKSKHSSENSIRAVDQTKNVSHKTLKSSTGMPAAKVIVDSVKVKKFSERLNVIGNGRAIATVGLTPWSAGVVDKLFVSAGEKVQAGDLIAKLDSKKEEIAAARAKVQRDNSALTLSRILKLRATNTATEVQELTARLELDNANLALRDAELALDRRTIRTPISGIVGILPIDVGNAVALNTEIGRIENRERILIDIWVPERYASRISKGDKVAVTLTTQSSETFIGHIYAIDNIVDVASRTFHVQVEIKNEKDTLMSGMSFSVTFQFDIGLFPVVNPLAIQWDSNGSFVWCVKEDKVERTPVSIIKHKTDKVFVKAFLENDAQVVIQGVQTLYPGRSVIVEVSKGPQQ
>NC_014932.1|WP_013544599.1|272920_276064_+|efflux-RND-transporter-permease-subunit
MSQEFKTKQSIIQPEQGGMIALFIRRPVFTFVVNAMIMIAGFAAWMNVDVRELPDVDTPVTTIMTIFSGASAETIDREVTKVIEDAVARVSGVKTISSTSSFGRSRVQINFNVGVDLNVAASDIRDAISRIAYSLPKDADSPLIIKADSNAASMMYLVVTSPTMSIDDLTTVVNDQIVDVLSAVDGVGDVQVDNARTKIFQIDVDQVKLASYGLTVADISRVLADMTTDAPVGSLRNSIQTLIVRATARLTTPEAFEQVVLKPHVRLGDVAHVTLSPDVETVILRINGKTGIGMGIVRKAQSNTLDISEGIRAVLENLKIVLPPSVDISILSDDAIFIKSALHEVKITLVIAILSVILVIFLFLRDIRVTLIPVLSIPVALIGTIAAIYLADFSLNILTFLGIVLATGLVVDDAIVVLENIVRWRNMGLGSRSAAVVGTREVFFAVLATTLTLVAVFVPISFLPGQVGGLFKEFGFVLAISILLSSVVALTLCPMLASRFLRKYVEDSGGGTHYFVLLDKWGTFFSRSYAYSLHKCLERPWTVILVSLIFAGFCFGGYMKLQQELTPEEDRAVILLVINGPQGISVQYLNEQVKQIEASLEPLRDSGEIINSYSIAGIGGSPNSAFLVLLLSSWDQRSRSQQEIVEDINRKVKEFPAVLVFAAQGNSLGIRETGQGLQFAILGDNYTKLESTAGELIKLLQLDARFVRPRLTVDATQPQFFIEIDREKASNLGIDITNLSNTLQAILDGRKIGSIYIDDHSYNVKLTSRKNPINNPADLENVFFKTTDDKYVPLSAIADLHEKAIAPQLKREKRMSAVVLSAGLASGVSLGNAYQIIKDIASPLLLEGNYIVPLGEAATLGETSSSFMIVFGIAFVIILLVLAAQFESFVSGFIIMATVPLGIGCAVIAMLFSGVSLNIYSQIGLILLVGVMAKNGILIVEFADQLRNQGKSVREAVEDAANIRLRPVCMTMICAILGGIPLVLAKGAGAEARIALGWVIFGGLGLATVFTLYVTPVVYLLLGRFVQPKAEEEMCLKKELAKLNDFS
>NC_014932.1|WP_026501075.1|276251_277895_+|glucose-6-phosphate-isomerase
MIRNERAFEQVLKALKQHLIKDGVCDIRQHFAKDAQRFSRFSLKLDDLLFDFSKCGVTFNTLQLLDNLAVAADVLGWCKAMFSGEVINTTEKRSALHVALRFSVDEIFMLDGRDIVRDIQAVFAHMEIFSEMVRDGSYEGSSGERILDIVNIGIGGSDLGPAMVTNALKPYHDGPRCHFVSNVDSAHISDILADLNPATTLFVIASKTFTTIETMVNARVARQWISAHLGEEAIRTHFVAVSSKVDKVIEFGIDSSKIFRFWDWVGGRYSVWSAIGLVIMLAIGGQNFRQFLKGAQQMDQHFKSAPLHQNIPIRFALLGFWHRIICGYTSRAVIPYAQRLERFPAYLQQLDMESNGKQVFLDGKPMNFPSGPVVWGSSGTNGQHAFFQFLHQGTDIVPVEFILFVKGHEPNLCHMHDMLVANCLAQSEALMRGRNIEEVRHTIHGVDDTELDNLALHKSCKGNRPNIILLQDLLTPFTLGRLIALYEHRIFVEGILMNINPFDQWGVEFGKELANELLPMICGENKNNNHDNSTLELLAHIQERRIK
>NC_014932.1|WP_013544601.1|278248_279106_-|YopJ-family-type-III-secretion-system-effector-serine/threonine-acetyltransferase
MQRLLNAIKNAIGLPNTEDSFSNASLENIITDLENDIANNYWHNRVYAERDFKMMPALVKQANDKYPEMNLKLIKEPIDFVSSFKKTIKKGIQSSRYIVSAGGDYQSHFGVVDHQTLNNKISLILFEPARFDLTKPAILGAKMQIIMETRLSHCYFSMAEMDIQRSISECGIFSLAIAKKLYRQSDKLEKLHIDNIKGDQWDRGIHLSYNLLDKYLPVSFYKHTQGMRRIKEYIEKNPGSEDEIVNKKNQTIVERFEENLVILPSKSISVSIHKKRVSEYKSLMR
>NC_014932.1|WP_013544602.1|279693_279810_+|DUF3380-domain-containing-protein
MLVSAITINEEAALKSASYGAEQSLGENYGIVIAGLSS
>NC_014932.1|WP_049785180.1|281067_281340_+|hypothetical-protein
MGDASVSEITDIVQLLEKGIIYYGYNYHNGSNSSVLKNKYGLIDAEAFKKRCTYDVVKAIVNLKQEPLPEWFDTDYLKFIHKRLYDNVFE
>NC_014932.1|WP_013544605.1|281433_282756_+|BID-domain-containing-T4SS-effector
MARSDKIEEGLKIIDQKLSRKNNWRNLSREEFVHNASVTFAFLHNLQPFVAGNGCAQRIFFEKIAEAAGHKLDFSVVTEARMQFAGSAALSFGDNEGNVAPLRHLFEDISNPEKVSVLKEFIQYTSDIKGEDIRDKVIVMPNEGETYTGFYKSCSLDSIMLMVKDSYVLCKKDYLPPEKLKTLKLGDSITFTASISKDCENILIPEERLASLTEEEIIEKIQKDFFVQKCRKEIKSLSKLIYGNSEMLNEHMDMINIGSSAGEQNVRYAVTDLPKPILKSSGTKMLGRADPKYQQTEKNVFYLDQKINSYISAVLHSRKRILKEHSLEQERCGQVVKMPCKTVQDILSMSGNISIEILNSDFLLCKHLQDFMCKVGSRLSQSERKAIGDNNYNVLAESIGISVSKAKRVTQIIKRAQEVCQKEKVFKADRSRIMATGFSK
>NC_014932.1|WP_013544606.1|282838_283459_-|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MGRTLVLIRHGQSEWNLTNRFTGWKNPALTEKGHTEAITAGKNLKAAGFKFDIAYTSALQRAQKTAEHILEQLGQSNLHLVKNTALNERDYGDLSGLNKDEARQKWGDKQVHIWRRSYTIAPPNGESLRDTGARVWPYYLYHIQPHVLRSKTVLVVAHGNSLRALIMILEGLNNEEIMSQELETGIPIIYEFNTDSTIKSKEIIVP
>NC_014932.1|WP_013544607.1|283494_284301_-|4-hydroxy-tetrahydrodipicolinate-reductase
MRLAVVGANGKMGRELITALQYRQDVKLSAAIVRKGSPFIGKDASILIGSNLLKIRITDDLENAFSNAECILDFSQPQASVVYADYAAKKGLIHIIGTTGFSKKEEMQIAAFAKHTTIVKSENMSLGINLLANLVKKAAKVLEADDFDIEIYEMHHAEKIDAPSGTALLLGNAAAKGRNVTLKDVNISEHNRYTSKRKKGTIGFTCSRGGTVIGDHSVTFAGLNERIVLSHLAQERSIFANGALKAALWAKERKNGLYSMLDVLGLKD
>NC_014932.1|WP_013544611.1|285364_286996_+|BID-domain-containing-T4SS-effector
MSRANCNDYVQSSISFYGYTHFDGRTLKNKYGMQGKALQERCAYDLLQAMLNLRKEPLPEKFDSSYLKYLHQRLYEKMFEWAGCTCDTPFTFSDGTVTKVPINNKIKEGLKRIDQILAEKNNFQGLSRKEFIHEVSTVFILLNKIRPFMVGNKYVQRIFFEQIAEAAGHKLDFSVVTEKRMQFAIHAALSFDGNNNRGNITPMLHLFEDISNPEKVGILKEFMIYIRETDVITPEQMHNKIIVIPDEGSTYTGIYKGCSLDSIMLMVKDSYVLCKKDYFSPITVKTLQLDDKLTFRALMPDNFKNILIPGEELPSLTEKEIVARIVKNASVQKCRKEIERLSGLVYGNSRMVNEYMYLINTDSSLGEHHVRNVMNFPQATSKFAGIKILGMKSQKYKQAEAKAFDLSQKIDDYISIVISTRENILQEHQSAQERCKKVLEMPSQALRDILNLPKEDRITTLNANPSLHKELEDFMSKIKIRFSPNEHNAIGKNRYEQLAQSVGISVSKAREITQMIKQSQEACMQVKAFRVSDTRVKTAAFAV

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Crispr_ID: NC_014932_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_014932_2

492703-492799

Orphan

Consensus_repeat	Method
AAACTTCCTGGCATTCCAGGTTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_014932_2

>merge|NC_014932|2|492703-492799|CRISPRCasFinder
AAACTTCCTGGCATTCCAGGTTTTGATCCAAGATTAGGAGCTGCTGTTCCTGATCGTGGTGCTCCAGCTCCCAAACCTCCTGGCATTCCAGGTTTTG

>NC_014932|2|2|492703-492799|CRISPRCasFinder
AAACTTCCTGGCATTCCAGGTTTTG	ATCCAAGATTAGGAGCTGCTGTTCCTGATCGTGGTGCTCCAGCTCCC
AAACCTCCTGGCATTCCAGGTTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_014932.1\|WP_013544802.1\|494364_495240_-\|flagellar-motor-stator-protein-MotA	unknown	unknown	gnl\|CDD\|181655
NC_014932.1\|WP_013544793.1\|487994_488438_+\|hypothetical-protein	unknown	unknown	unknown
NC_014932.1\|WP_013544798.1\|491269_492352_-\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NC_014932.1\|WP_013544803.1\|495528_496329_+\|DUF1217-domain-containing-protein	unknown	unknown	gnl\|CDD\|369062
NC_014932.1\|WP_013544804.1\|496366_497101_+\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|237153
NC_014932.1\|WP_013544787.1\|481975_482968_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_014932.1\|WP_013544801.1\|493393_494362_-\|FliM/FliN-family-flagellar-motor-switch-protein	unknown	unknown	gnl\|CDD\|224781
NC_014932.1\|WP_173361647.1\|483978_486096_+\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|237205
NC_014932.1\|WP_026501104.1\|500134_500479_+\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|179126
NC_014932.1\|WP_013544790.1\|486103_486883_+\|flagellar-biosynthesis-protein-FliR	unknown	unknown	gnl\|CDD\|183741
NC_014932.1\|WP_035450884.1\|497342_498695_+\|flagellar-protein-export-ATPase-FliI	unknown	unknown	gnl\|CDD\|235666
NC_014932.1\|WP_013544807.1\|499273_499660_+\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|168340
NC_014932.1\|WP_013544808.1\|499662_500079_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|139220
NC_014932.1\|WP_026501105.1\|500524_501313_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183686
NC_014932.1\|WP_026501100.1\|488434_488902_+\|hypothetical-protein	unknown	unknown	unknown
NC_014932.1\|WP_026501099.1\|486885_487272_+\|hypothetical-protein	unknown	unknown	unknown
NC_014932.1\|WP_013544792.1\|487403_487922_+\|rod-binding-protein	unknown	unknown	gnl\|CDD\|378407
NC_014932.1\|WP_155914827.1\|492945_493413_-\|hypothetical-protein	unknown	unknown	unknown
NC_014932.1\|WP_013544796.1\|489644_490070_-\|hypothetical-protein	unknown	unknown	unknown
NC_014932.1\|WP_013544797.1\|490181_491252_-\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569

Protein	Function_ID	Function_description	E-value
NC_014932.1\|WP_013544802.1\|494364_495240_-\|flagellar-motor-stator-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	1.38902e-157
NC_014932.1\|WP_013544807.1\|499273_499660_+\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|168340	PRK06003, flgB, flagellar basal body rod protein FlgB; Reviewed.	6.24424e-60
NC_014932.1\|WP_013544798.1\|491269_492352_-\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	6.73374e-94
NC_014932.1\|WP_013544804.1\|496366_497101_+\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|237153	PRK12642, flgF, flagellar basal-body rod protein FlgF.	2.73697e-96
NC_014932.1\|WP_013544787.1\|481975_482968_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.18585e-130
NC_014932.1\|WP_026501105.1\|500524_501313_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183686	PRK12691, flgG, flagellar basal body rod protein FlgG; Reviewed.	1.61025e-144
NC_014932.1\|WP_026501104.1\|500134_500479_+\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|179126	PRK00790, fliE, flagellar hook-basal body complex protein FliE.	3.27146e-20
NC_014932.1\|WP_035450884.1\|497342_498695_+\|flagellar-protein-export-ATPase-FliI	gnl\|CDD\|235666	PRK06002, fliI, flagellar protein export ATPase FliI.	0
NC_014932.1\|WP_013544792.1\|487403_487922_+\|rod-binding-protein	gnl\|CDD\|378407	pfam10135, Rod-binding, Rod binding protein. Members of this family are involved in the assembly of the prokaryotic flagellar rod.	1.26625e-07
NC_014932.1\|WP_013544808.1\|499662_500079_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|139220	PRK12782, flgC, flagellar basal body rod protein FlgC; Reviewed.	4.85491e-78
NC_014932.1\|WP_013544803.1\|495528_496329_+\|DUF1217-domain-containing-protein	gnl\|CDD\|369062	pfam06748, DUF1217, Protein of unknown function (DUF1217). This family represents a conserved region that is found within bacterial proteins, most of which are hypothetical. Some members contain multiple copies.	1.13931e-46
NC_014932.1\|WP_173361647.1\|483978_486096_+\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|237205	PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.	0
NC_014932.1\|WP_013544801.1\|493393_494362_-\|FliM/FliN-family-flagellar-motor-switch-protein	gnl\|CDD\|224781	COG1868, FliM, Flagellar motor switch protein [Cell motility and secretion].	4.47585e-47
NC_014932.1\|WP_013544790.1\|486103_486883_+\|flagellar-biosynthesis-protein-FliR	gnl\|CDD\|183741	PRK12780, fliR, flagellar biosynthesis protein FliR; Reviewed.	4.29971e-91
NC_014932.1\|WP_013544797.1\|490181_491252_-\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	9.91298e-142

>NC_014932.1|WP_013544798.1|491269_492352_-|flagellar-motor-switch-protein-FliG
MTQVKQIKTTEEINDVSDNISSDTESSSTIIDTLSGQQKVAALLVALGKPAAARLLKHFTPDDLRRLSGQAHTLPNISLADFEILVRQFEDAFAEGVSFSEAGAKFDNLVQETLPEDEAALVFDPSKAPALPQENIWDIIKKLNIDVLQKHLVQEHPQVISYIISRLPSEIAAKILMAQTMSVRSDLTRRRLHLRTVSPEIETLLDQALRPILLKNNDEGDKAHHSQVAIIFNELDKADIDEMLANLDNLNPEDIEKIKAKLFVFEDIPRLTERARLLLFDGIAADTIITALHGAENLMKELILNSLSQRTRRMVETELSTENEAIQQEAIINARRSIAQTAIKLSEQGTINLLGEEGTS
>NC_014932.1|WP_013544797.1|490181_491252_-|flagellar-biosynthesis-protein-FlhB
MSDEKPDKESQTEEPTEYKIRKEEEKGNLPFSRELPIFASLVSFSLICIFISFPAISKLTFFLVQWFERPESWRINTAEDIKHLIYLVGGSVGLALAPILILIPLLNIVASAVQNVPRFVIERIRPQWSRVSPANGFKRIYSKAGLVEFLKSLTKLIGVSLIVYMIFFKSNTIFINALLTDASALPEYIRKELISLSLSFTAAVVALVGLDLAWSRFHWRQQLRMTKQEIKEEHKNLEGNPMVKARMRSLARDRTRRRMIANVPTATLIVTNPTHFSVALRYKPPLDYAPVVIAKGQDILALHIREIAIKNDIPIFENVTLARTLYKQVEIDQTIPTELYESVAALIRFINNQKKY
>NC_014932.1|WP_013544796.1|489644_490070_-|hypothetical-protein
MKKDYIIEIREMALAKQVAQFIPELRLIDVGDFIACIHAERFNYLSDLIESATELRFYPHTMRFARNASYELDWNTTPSILLHMEFSNEGVNAFFRILMSAEEFGVELDNCIFDNPSDEETNTSAFMNALNNARIQKPLAH
>NC_014932.1|WP_026501100.1|488434_488902_+|hypothetical-protein
MIRMIAMGLWVCLVALGALVFGLRMSAVDPNSSEETAPIPVEVGSNNTEIMSVPVLVDGDVQGYVIVQLTYVVDKTIEKEISIPVGVLINDIIFQYFWGSYSDVRAIEKVKFQMIKKRIIDDVNQRFSKVVLKDLLVKQFNYLSVDKIRGMKNTQ
>NC_014932.1|WP_013544793.1|487994_488438_+|hypothetical-protein
MSVTQYDDENITLKTKILNNNLIGRDWAMTKLTAAIKGLSEVVDYESNVLENHGVPDYEEINLRKTRGLRDLNKSMNDVKRYMDQDIEAEIQPLLTSLQDKLNRNSELLRIHLEAVRDLSRIMQVAARAEETDGTYDPVLVNAGRFK
>NC_014932.1|WP_013544792.1|487403_487922_+|rod-binding-protein
MAIQLPSDIVLDVARAADPLEYRTSVDKLYSLQKIARTQAIEREGNSFADRIVQQTHVKPQSVESKETAVFRDFEAFVLQTFVENMFATDIQSIFGKGQAGQIWKSMMAEQLAKEFAISGGIGIAQMLVSDQMRKEADSSLSALETDQALDAKDHHLLADAVIYKNELDLTR
>NC_014932.1|WP_026501099.1|486885_487272_+|hypothetical-protein
MQKSKRYRRLLKVQSLIEAHHTAELEHMKGQLFSCQEETRMLFSLMEKDSAFNFWNAPFLAKRLHHTAKSEEKLQGRIVQQKQVVREASSRSKKLGDKCKKVQSIEKRKQFNDMIEEYITNKTRGISV
>NC_014932.1|WP_013544790.1|486103_486883_+|flagellar-biosynthesis-protein-FliR
MSFFLPLTSFSIEQSVTIALLIFSRVGTCLMLMPGISSVRIPMSLRLFIGISFSLAILPMVTDFFKVFSDKSDLALLIRALFAEMLIGATFGVIAHAYLWALQFMSSIIGMSIGFSGQPGHSIIDSTPESHVANILVFAAIMLFFASDLHIITIRGLLASYDIVPLAFIPNPEAALTDYREALSRAFLTTLSIAAPFIIYAILINIAIGLLNKLTPTIPVYFISLPFVMCGGLFLLYILMPELLHLFNSELHDWLKKGP
>NC_014932.1|WP_173361647.1|483978_486096_+|flagellar-biosynthesis-protein-FlhA
MYKEKNVQQHSPIINIAHQDKFSGRDVAFAAGIIIILTVLFLPVPAFVLDLGLSFSIAFSVLILMVSLWIQRPLDFSAFPTVLLIATLLRLSLNIATTRVILTHGDEGYKAAGHVIQGFSQFVMGGDFVIGLVVFAILIIVNFLVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIDEKEAQHRRQELEEESSFFGAMDGASKFVRGDAIAGLIITAVNIFGGIVIGVTRHGMSLSGAADVFTKLSVGDGLVTQIPALIVSLAAGLLVSKGGTRGSAEKAVLGQLGGYPKALFVSSLLLLMLGLMPGLPSFPFLLLSALMASIGYSIPRRLKREALAKEALHEKENQIAHLEESQSVKASLEIVQVEIAMGKQLSQHLLPKKVELANRVAKMRRKFAQEYGFVIPEIQISDDYTIPGKSYWIKLYGTVIASYEMRIGDVLIMPGNKPIPNIPGEYVSEPAFGMRAFSTSETFRSELIREGYMAVDNLSVLLTHLSEVLRNNLAQLFSYKDMRILLERLGSEYRKLLEEICPAHLSYSGLQSILKLLLSERVSIRNLNLILEAVAEIAPHVRRCELIAEHVRLRMSQQICGDLSENGILNVLRMGSHWDLVFHKALKRDTKGDIIEFDINPVELEKFGTDATTLIRQHMEKATRFALITSPEARPYVRMIIERLFPTLPVLSHAEIARGVEVKTLGTISKG
>NC_014932.1|WP_013544787.1|481975_482968_+|bifunctional-riboflavin-kinase/FAD-synthetase
MSDFLRFQEYNFLPLAWRGGVLAIGNFDGVHLGHQAVLQKALDLSREKKRPALVLTFEPHPKSFFQGSASVDRLTQAAEKAEIFKILGFHGVIEQPFDEQFSALSADEFITVILKQAFDVSVVVTGDNFRFGCQKSGNLNFLRQKGKEYGFEVVQIPCLCTRQKETISSSFIRKLLLKGQVSQVAHLLGYHYRVSSNVVQGEKLGRHLGFPTANQFLPPQTSLAHGVYAVRFRRANGALHDGIASFGRRPTVVVNGAPVLETYLFNFDDDLYGENCTVSFLQFLRGQKKFDGLEPLITQMQHDEKEAQMVLKTKQPLSLLDRVLTFKNTP
>NC_014932.1|WP_155914827.1|492945_493413_-|hypothetical-protein
MSWFMFNFVSALLALVSLSVLIITTRKLAATIQMGRELAKQVQIGTACLDQALLTLREEHQEFRDENRKMDARMIESTRIRRDIDRSISHMENVRDQLKSDFNQFRGILTAQAHGPSAASGATHALRRQPIIPKGLPVFVQRKIHKTSLNNKIQL
>NC_014932.1|WP_013544801.1|493393_494362_-|FliM/FliN-family-flagellar-motor-switch-protein
MTEPIEQQANKDKVQEDKKQDVLTQHILRAAGLSSDDLMSFQYVFRDAASNLCMRLGNYTSLKFTTDVQSLDTLKADQITQAIGTEALLIYFNSDCWGDDVIFVLDATLIELVTEVFFGASEPIVTNRNGRPFSPTERKVGETFGKLLAYAIDGVFGVGDGSLLIFKQTCKAQEFNAETFNQSQMFSCTLGVKCGEVEAKVNILMPRSCHRPIQEAVTRALRSPAKRTDPLWAKRLKQEVSRSRVRIEAFIQQGSMTLNELSILKVGQVLPLPANAEKQIRLRSGNKSLYKCSLGKIGTSFSIRVTNPIDEEEEMIDELVHV
>NC_014932.1|WP_013544802.1|494364_495240_-|flagellar-motor-stator-protein-MotA
MGVIIGLVIIFGCILGGYVAMGGHLDVLIQPWEFVIILGSAIGTFIVSNPFPAIKDTLKATIEAMKDAVPKQKDFLALLGLLYVLMREMRSKSRSEMEGHIDNPKESTLFQQYPLILKDESLTNFICDYCRLIVMGNTRHFEIEALMDEEIHTISHDSQKPYQAMQNMADALPALGIVAAVLGVVKAMGAISEPPEVLGHLIGAALVGTFAGIFFAYGIFGPIASKIKTVRNKKVRIYIVVKQTLLAYMNGAIPQIALEYGRKTISAKDRPTIDVVEQHAIAGQGTEKEAA
>NC_014932.1|WP_013544803.1|495528_496329_+|DUF1217-domain-containing-protein
MISTYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDDFLANDKVYSYAMKAYGLEDMIFAKGMIRKVLSDPQYASQLVDKRYQQFAEAFNFSKYGEKATQRESAKTVTVNKYMQQTLEVEAGQVNEGTRLALYFTRTVGGMVKDNILKEKNWAYQILSDKALSAVVFKAFNISENVLTSPIESQKSLLESRMSLKDLQDPKKLEHLIAKFSAMYDVQNQTMINPALMILQGPNMGGGLAFSNETIMVLQSFKQGGL
>NC_014932.1|WP_013544804.1|496366_497101_+|flagellar-basal-body-rod-protein-FlgF
MQNPIYVGVSGQIGLERRMETIAQNMANVNTPGFRAGGMKFDTLISPVAHEQGDRVFFTSAGKGYISTDRGSLVQTGNALDIAVTGDSYFSMQASFGQVYTRDGRMIMTPEGGLVSVTGLPFLDEGGAPIQLDPVGGIPRIVSDGSIYQDNSLVGKIGLFQFQPGTQLRYGPNSSVIPDRAVLQSEAGSGDGVMQGYIESSNVNGVIEMTRLIEVSRAFERVESMLRQQEEMRSKSIQVLSGKI
>NC_014932.1|WP_035450884.1|497342_498695_+|flagellar-protein-export-ATPase-FliI
METNPSPTALSRLFDFARRKDDYYSQLVSQGGIISDVARGTLVARGLSQSVLLGDTVSVECETQLLRGEIIRVNEESVLIKPYDETIVPVLSASVFPKGPLFVAPDRSWRGRIVNAFGEAIDGKGILSSGSQNMAIETYAPPALKRARVGAGLRTGVKVIDIFTPLCFGQRVGIFSGSGVGKSTLLSMMMQADHFDTVILALTGERGREVRDMLDDTLQDKLHKLVGVIATGDESPMMRHLAPIMATTIAEYFSSLGDNVLLVVDSVTRYALAAREIAISAHEPPVSRGFPPRVFSELPRLLERAGPGREGKGSITGVYAVLVDGDDHNDPISDAIRGILDGHIVLDRAIAAQGRFPAVDILSSISRLASHSWTPEQCTLVKNLKEMIFRYEETRDLRAMGAYRPGTDHVLDQAVFLVPSIYAAMKQSPDVPLISDPYEELAKLLKANSS
>NC_014932.1|WP_013544807.1|499273_499660_+|flagellar-basal-body-rod-protein-FlgB
MDSVNLFEMANKQADWLSVRQKAIASNVANANTPGYKARDVDDFTAVLQNKTISMAVTNVHHMDMTENGMEAHVMRPENITEITHSGNDVNLEEEMRKGGDVSREISLNTAIVKAFHRMTIAAVKGGA
>NC_014932.1|WP_013544808.1|499662_500079_+|flagellar-basal-body-rod-protein-FlgC
MSDRLIAAEQIATTGLSAQSTRLRIIAENLANANSTGKSAGARPYQRKTVSFEATLNPYIDAQGVHVKRISTDKAPFIMRYEPGHLAADSNGYVKYPNVNSIIEMADMREANRSYEANLQVIRQARDLVSQTIDLLKG
>NC_014932.1|WP_026501104.1|500134_500479_+|flagellar-hook-basal-body-complex-protein-FliE
MIEALTSVASHNVLNSLGKENMQMHSLNGQQISPGMVERGNKVSFDEVLSEVVEVVGTKLQTAESLSIGRISGSDVGVREVVNSVMEAERSLSIAIALRDKLVQAYLEVSRMQI
>NC_014932.1|WP_026501105.1|500524_501313_+|flagellar-basal-body-rod-protein-FlgG
MKSLSIAATGMAAQQTNLDVIANNMANINTTGFKRGRAEFADLMYVADRAVGIPNMLNQAIIPEGAMIGMGVRTAAVRTVNTQGAFVQTGNALDLAINGNGWFEIQDPNGNVFYTRSGAFNLSETGQIITLDGNLVQPVITIPIGSKNVTVSPDGTVYYQTDADPSAVEAGRLRLVNFVNEVGLEPIGDNLFRETQASGAPVPGDPKDDGYGSIMQAMLESSNVDPVKEMTELIAAQRSYEMNSKVIQASDEMAAVISKNLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

716926 : 726966

uncultured_Mediterranean_phage(71.43%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013544976.1\|716926_719842_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	61.8
WP_013544977.1\|720061_720550_+	single-stranded DNA-binding protein	A0A0K1LLZ9	Caulobacter_phage	2.1e-46	59.2
WP_013544979.1\|720975_723747_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	4.8e-103	34.1
WP_013544980.1\|723780_724275_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.0e-23	35.6
WP_026501111.1\|724289_724874_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	4.5e-43	51.6
WP_013544982.1\|724898_725411_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	2.2e-46	59.0
WP_013544983.1\|725847_726966_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.4e-101	52.9

DBSCAN-SWA_2

840980 : 848447

Deep-sea_thermophilic_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026501122.1\|840980_841694_-	transcriptional repressor LexA	E5DV74	Deep-sea_thermophilic_phage	2.0e-08	33.3
WP_026501123.1\|842925_843825_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	2.2e-20	55.1
WP_013545078.1\|843927_845112_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.6e-45	32.1
WP_013545080.1\|845160_845793_+	dTMP kinase	M1PSC7	Streptococcus_phage	4.7e-30	39.2
WP_013545081.1\|845789_846842_+	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	1.1e-10	27.2
WP_013545082.1\|846905_848447_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	6.0e-95	40.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_014932

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection