CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015702	Parachlamydia acanthamoebae UV-7, complete genome	2 crisprs	cas3,DEDDh,RT,PD-DExK,DinG	0	0	0	0

Cas Category Instructions

Results visualization

1. NC_015702

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CRISPR-Cas detection and classification

Crispr_ID: NC_015702_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015702_1

112559-112656

Orphan

Consensus_repeat	Method
CAAAAAATAATGAGATGTGATCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015702_1

>merge|NC_015702|1|112559-112656|CRISPRCasFinder
CAAAAAATAATGAGATGTGATCCGTTCGGGTGTATTAAGCGCACGCTTATGCATGCAATGCGTTTTGCTGCTCTCCAAAAAATAATGAGATGTAATCC

>NC_015702|1|1|112559-112656|CRISPRCasFinder
CAAAAAATAATGAGATGTGATCC	GTTCGGGTGTATTAAGCGCACGCTTATGCATGCAATGCGTTTTGCTGCTCTC
CAAAAAATAATGAGATGTAATCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015702.1\|WP_006341228.1\|106146_106629_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|335963
NC_015702.1\|WP_006341531.1\|119877_120546_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366664
NC_015702.1\|WP_013924140.1\|117475_118729_-\|CinA-family-nicotinamide-mononucleotide-deamidase-related-protein	unknown	unknown	gnl\|CDD\|234789
NC_015702.1\|WP_006341530.1\|120550_121393_+\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NC_015702.1\|WP_013924143.1\|122716_124171_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|236416
NC_015702.1\|WP_013924139.1\|115886_117080_-\|FIST-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225825
NC_015702.1\|WP_006341226.1\|107387_107900_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|153118
NC_015702.1\|WP_006341527.1\|124342_125302_+\|KpsF/GutQ-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|129488
NC_015702.1\|WP_006341532.1\|119152_119869_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|274307
NC_015702.1\|WP_013924128.1\|102418_105853_-\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|335690
NC_015702.1\|WP_013924129.1\|106664_107219_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|130218
NC_015702.1\|WP_006341220.1\|110395_110647_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NC_015702.1\|WP_013924133.1\|109467_109797_+\|hypothetical-protein	unknown	unknown	unknown
NC_015702.1\|WP_013924134.1\|109799_110390_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NC_015702.1\|WP_039378107.1\|121368_122595_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238090
NC_015702.1\|WP_039378073.1\|108278_109352_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_015702.1\|WP_013924131.1\|107955_108237_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|182452
NC_015702.1\|WP_013924137.1\|113941_115129_-\|FIST-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|225825
NC_015702.1\|WP_013924145.1\|125437_128509_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237254
NC_015702.1\|WP_006341219.1\|110699_111401_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015702.1\|WP_006341228.1\|106146_106629_+\|BON-domain-containing-protein	gnl\|CDD\|335963	pfam04972, BON, BON domain. This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.	9.93635e-14
NC_015702.1\|WP_006341531.1\|119877_120546_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	8.94794e-11
NC_015702.1\|WP_013924140.1\|117475_118729_-\|CinA-family-nicotinamide-mononucleotide-deamidase-related-protein	gnl\|CDD\|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	6.42868e-115
NC_015702.1\|WP_013924143.1\|122716_124171_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|236416	PRK09222, PRK09222, NADP-dependent isocitrate dehydrogenase.	0
NC_015702.1\|WP_006341530.1\|120550_121393_+\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.54558e-117
NC_015702.1\|WP_006341532.1\|119152_119869_+\|OmpA-family-protein	gnl\|CDD\|274307	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.	1.03606e-37
NC_015702.1\|WP_013924128.1\|102418_105853_-\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|335690	pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.	5.78753e-136
NC_015702.1\|WP_013924145.1\|125437_128509_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237254	PRK12899, secA, preprotein translocase subunit SecA; Reviewed.	0
NC_015702.1\|WP_006341226.1\|107387_107900_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|153118	cd07909, YciF, YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	4.81999e-63
NC_015702.1\|WP_006341220.1\|110395_110647_+\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	5.69324e-07
NC_015702.1\|WP_039378073.1\|108278_109352_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.40032e-39
NC_015702.1\|WP_013924134.1\|109799_110390_+\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	3.53944e-14
NC_015702.1\|WP_039378107.1\|121368_122595_-\|hypothetical-protein	gnl\|CDD\|238090	cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.	0.000379755
NC_015702.1\|WP_013924139.1\|115886_117080_-\|FIST-C-terminal-domain-containing-protein	gnl\|CDD\|225825	COG3287, COG3287, Uncharacterized conserved protein [Function unknown].	6.13524e-43
NC_015702.1\|WP_013924131.1\|107955_108237_+\|CsbD-family-protein	gnl\|CDD\|182452	PRK10428, PRK10428, hypothetical protein; Provisional.	5.44973e-18
NC_015702.1\|WP_013924137.1\|113941_115129_-\|FIST-C-terminal-domain-containing-protein	gnl\|CDD\|225825	COG3287, COG3287, Uncharacterized conserved protein [Function unknown].	9.7998e-41
NC_015702.1\|WP_013924129.1\|106664_107219_+\|hypothetical-protein	gnl\|CDD\|130218	TIGR01148, mtrC, N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase. [Energy metabolism, Other].	6.90951e-07
NC_015702.1\|WP_006341527.1\|124342_125302_+\|KpsF/GutQ-family-sugar-phosphate-isomerase	gnl\|CDD\|129488	TIGR00393, Probable_arabinose_5-phosphate_isomerase, KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. [Energy metabolism, Sugars].	2.10653e-89

>NC_015702.1|WP_006341219.1|110699_111401_+|hypothetical-protein
MELINESVIRSFPLESFLKRWPFPWHNFHEFLTEESFKQLHDEFPPLELFEYHENLARGKNQRPHNRYYLAYEKSKYSEDKEKVGAIHAEFLSPTWQKFLHEIETNAPYQNLMKQILGEQRYQIRYAWHMGISTNEVSPHCDNASKVATHIFYFNTSEDWDLAWGGALLVLGDKLTPNQNPDFQDFMTSTPINFLDNYSFLFKNTPNAWHGVKALKSPPGKYRRLFNVIYDLE
>NC_015702.1|WP_006341220.1|110395_110647_+|YtxH-domain-containing-protein
MVNKIQEDFLWGTLIGTFLGAATALLLTPASGAKLRQKMLNQLNQINGKKTKHAASPRSRSTKALKSVIPQPKKPHRKHTRGH
>NC_015702.1|WP_013924134.1|109799_110390_+|YtxH-domain-containing-protein
MGTQNHVNCFLKGALLGGLTGSLAALLLAPKSGQELRNDLSDTIEDIREKSQHFSDQVKETGHKALHAFDYHNGYHEEEEDESPATMWLGGAFGAILGATSALLLAPQSGEKLREELGEKYDEIREKAESFMANVNHKGHDAMEYAEDWKDTLNTIISKLSTSNSKRKHASNSHLEEIIDWASLGIKVLQQFQNRR
>NC_015702.1|WP_013924133.1|109467_109797_+|hypothetical-protein
MFIEIMIFISVIVFAVLAYFVIQTLITVQKTLKKLDFFMDGMELRMEKMDPFIRSISNVGDICEEKTHLLQKEFMEKKKVIAFQEEPTGDLTDWLLLGLILIKKVLKRR
>NC_015702.1|WP_039378073.1|108278_109352_-|AI-2E-family-transporter
MWYKSSFIKYATNILLGLLILFLFVKLLPFFYPIVQFVVAFFSPLILGIVLYYMFRPLVQYLTNHHIPSAIAISSIFLILGGIIASIATFLIPTIITSLQEVTTSPAQKIEEVKEATISFLNIFNLNLYSYNEVKSLITNFLEKIQQFVFANTYLIISTATHIAFIFVLTPFCLFYLLKDDQKFYGWTMEMIPPVYRPQCEKIFHHLDKTLLTFFNGQIVVAAIVSLMALIGLAIIQIDNLIFLAFLTFLLGLIPYLGTLIAIIPPTLVGLTSSYLMGLTAAIVMTSIHLIEANLITPHVMMKRLDVHPLTIILLIVASFSLFGVTGPLWITPLYVFLREIYTQLSQLYSPKENLKD
>NC_015702.1|WP_013924131.1|107955_108237_+|CsbD-family-protein
MVNKDTLQGQWKQLQGKIKEKWGKLTDDELTKINGRREMLIGKLQEKYGMAKDRAEKEVQNLEEAFRHSSESSEHEHEHEEKEHAHGSSKRRF
>NC_015702.1|WP_006341226.1|107387_107900_+|ferritin-like-domain-containing-protein
MTQNAFYRLFLKEISDLYSAENQLVEALPKMAEAATTPELKEALERHLSETKKHVARLDSIFSMLNENSFKETCEAMEGLIYEANEIIQNEAPSVVKDAALIGATQRIEHYEIAGYGVAKTFATQLELYDIAELLKESLEEEGNADKHLTVIAEGGFFTTGINKRAKNIS
>NC_015702.1|WP_013924129.1|106664_107219_+|hypothetical-protein
MTKAVFGLAKNESQAQRIVQKLQASGFDIDEISVLFADRTHEGKLTDVSTNKGAIGHEKHTKAPEGAATGAVSGGIIGGSIGILAGIGALAIPGLGPFIAAGPIMAALAGSGIGGSLGMLIGALVGMGIPEYEAKRYENSLKAGGILISVHTNNAEDVDRASELLRKEGAEDISTSYEKSERSS
>NC_015702.1|WP_006341228.1|106146_106629_+|BON-domain-containing-protein
MKSKLLILPALSIMLVGCEQHVTNPPPPKSPTQQNSSILDAAPSETNTNRNLQDRRASDDADNTSRNVRDRIEGALTPFDQSESVGDRITLQSIRKALVENKILSTYAKNIKVITANGVVTLRGPVNSAAEKEAIERIVSLIPGVTKVDNQLEVLQNAEK
>NC_015702.1|WP_013924128.1|102418_105853_-|exodeoxyribonuclease-V-subunit-gamma
MIHHSEHHVFFSNQVELLIHPLKQQLLGAHPFCRRLIIVPSPAMKSWVMFKMAEESGIAMGFETIYLDQGIQRLYQLIEPNQTLANHPSSFELTLALEVEVRQILMRCESLSSEEHELWKPLFGYLRFSPSIKTLSLKGEKRLISLVEKLAGLFLEYGIAGGEALEAWRQAPPSSWQVYLWKKIFERGNAYNWTYPYHYLNQISIPEKRIDQLQVHLFAMSYLPALYHNFLQKIAQAISVSFYLLSPCEAFWSDACSDKESKRMQRYWKKQDAPEAQQVALEELLRDKNPLLANFGRLGREMAVAVEDSNVRTSACYTLPARALDFPCYEESITSDILLHSSDRPYLTLLQAVQTDMVLFRNPDHTPPLDLSENDSTIQIHATPSLLREVQILHDNLIRLIHNAPKENPLSPNEWVVMAPDIRIYAPFIKMVFSNPNSPLDYKMMDAELPEQNLYIQSFLHLLKLSSSRWDTVSLLTLFDYLPFRNKWGLHFEDIDQIRTWIKETGIRWGMDIAHRQMILKQDHCAHTLVDENPAGTWEHGFQMLLKGLILEENDTILSVDITQSTLLGKWIYIVRSLHQDLIPLNDGSERTIQEWGTYLQHLSNFYLLPELSEHQELLEHLLHPFFKGFLPQHTFSFKTIQPILLSLFKKEDVSYRETSLRAVKFCSMLPMRAIPAKGIALLGLEEGAFPRFLPESSLHLLAFHPQADYSPSQIDFDRYLFLETLTSAREYLLLSYQAFSSTGKEQPPSLLVQELMSYLDKSYRLGDTCPSKRCFFKHPFHGYNPQYFDNSSLNSFSQENYRSALASLKTEKTSKHCFIPKFLSLRTPLCLEEEHILEIRQLIALARNPFEHYFNKRLGIYLEKEESRKIPDDDLFSLTSLSKASLKKEALKHPLDALLTQNEIKGRLPFGYFKALSLDQLKKEIEQNKSLLLNCGIALDQIFQIELTDAVSEPTQIHPACWLLPPLELTYQVDKRIKIVGILPEVTPQGLLAFIRDEKKEVIKAWPAYLILNCLANVYPDMFGKHLIFAKSGSIKAPFFDQPFTLLEHFLDYYFICQTHVSPLLPEWIPDMIENPKSCQLKIQKSLTGHFSLYNDYVDWMTRGDVDLDYVSLVSEWQELATAYFSPIYTHWYATKRRGDADV
>NC_015702.1|WP_013924137.1|113941_115129_-|FIST-C-terminal-domain-containing-protein
MSTIFTTSIVKEKDSHAAGETLGLEALKKMPTQKPDLAIIFGSPDYDYKKVFESFFKIIGEIQIIGCTSAGEFTEKEMSQGGIACAFITSDTHHFYTGIGIGLQNKQNEAIDVALANFPKSVPNFPLQSVMLFVDGLTGKGEEAVQATSRMLGGQVKLFGGAAGDNLHFKKTRVFGSGLALSDAVSTCLIASKKPIICSVKHGHHPISPALCVTKAKDNVLYEIEGKIALDVWKEYLQDEIQEQDWKHLINHSSEFLSKLLMKAGMITGDSYEIRFPISCNPDGSLNFICKVEKNSLIKIMSTRPSDQITSALEAAKEALKLAKNEKIAGIVVFDCACRGMILKERFSVAVEMIKDIFPDTPMIGVETYGEILLEPDVLAGGFHNASIVIMLIPE
>NC_015702.1|WP_013924139.1|115886_117080_-|FIST-C-terminal-domain-containing-protein
MSTVFTTSIVKEKDSHAAGEALGLEALKKMPSQKPDLAIIFGSPDYDYKKVFESLFKVIGEIQIIGCTSAGEFTEKEVSQGGIACAFITSDTHHFYTGIGIGLQNKQNEAIDVALTNFPKSVPNFPLQSAMLFVDGLTGKGEEAVQATSQMLGGQVKLFGGAAGDNLRFKKTRVFGSGLALSDAVSTCLIASKKPIICSVKHGHHPISPALCVTKAKDNILYEIEGKIALDVWKEYLQDEVQEQDWQHLINHDSEFLSKLLLKHEAGVITGDSYKIRFPISCNPDGSLNFICTIEKNSLIKIMSARPSDQITSALEAAKEALTRAKNEKIAGIVVFDCACRGMILKERFSVAVEMIKDIFPDTPMIGVETYGEILLDPDEPAGGFHNASIVIMLIPE
>NC_015702.1|WP_013924140.1|117475_118729_-|CinA-family-nicotinamide-mononucleotide-deamidase-related-protein
MDKKENIEILAIGTEILTGHTVNTNAAYIAKHLMDINLEVSRQIVAPDAGERLKAILTEIVARASLVIVTGGLGPTCDDNTRQIVAQLLGCSFRFDEEIAAELAQRYGANLMSLKDQATVLHPAIILKNTIGTAPGFIVQKNQTTVILLPGIPEEMKVMLGQVLDYLKSHFLDGVKTFTRKCNFFGLTESTVDVFLKQLQSNYPEVEFGIYSSQGVLTVQVTKKSEQKDPTLLLLDTLIQTIKNTFSGHFFDTPSNTIEEAIHNLFCQHNWTLSCAESCTGGQLASALTYFPGSSEYFLGGIVPYSNTQKIHILGVTPKSIEEDGAVSARVVSQMAENMLTLANSDYSLAVSGIAGPNGGTTEKPVGTIWAAIAQRGRPPFVWKFLAKGNRQLIIKKTINTILGQLLKICHQRLGEK
>NC_015702.1|WP_006341532.1|119152_119869_+|OmpA-family-protein
MKTKLLISIQLILAVIFCFGCMRTKDDVWDDTKSAGRHVQRGFRSLAGKHGDSRQVRCREEFSVYDEEYSFSPEECDYVPLQDLNNDNLIAMADVSRHPKYSPGDPGSAIPGIDAFYDPATYPELAGIFESVRFPYNSNLIKGEENLLALRKVANYLKKHDRVYVFIEGHCDERGAEAYNLALGSRRSNAVREILIKEGVNPENLFTISYGKERPLFLDHNEESWGQNRRAEFKIYQR
>NC_015702.1|WP_006341531.1|119877_120546_+|LysM-peptidoglycan-binding-domain-containing-protein
MAGSILIRKGMIPFLFVLVNLFQLEAANPPRTQNQRVLLEQEMKASLNILRHEFNNHEKEITLLEQKCESLQETLHVLSKQMMDNQDKQKEFVKSNTSSQETRLSELESTSKKIVQDLKNLQTHLNESTTVISKLDQKLSQLTQASELQHKNMENMQIALAALMDVLQPPQDVAQEFKLYEVKDGDSLGKIAQVHKTSIKVLKELNGLSQDKIRKGQKLKLP
>NC_015702.1|WP_006341530.1|120550_121393_+|glutamate-racemase
MFQKEKIWNNNPIGMFDSGIGGLTVMRAVMQLLPYESVLYFGDTAHFPYGNNAAETIIQYSLANAHFLMEQDIKLLVIACNTASAFAFSTLQDQFLIPIIDVISPSIEAAIAQTQSGSIAVLGTKGTIRSGVYKQKILDLMPQARVVSLACPLLAPLVEEQWLEHPATRLIVQEYLQPLKKSDVDTLILGCTHYPLLKSLIEEEMEGQVKIIDSASACALKVEEILGNQQLQSLKEKTPHFRYYVSDDPERFQQAGEQFLRSPITHVQSHQDTQISVFSV
>NC_015702.1|WP_039378107.1|121368_122595_-|hypothetical-protein
MSYTKILSGVLFMSSPVNSPRSSGEYKVEAANLGEIASANKTVQTNEIDASVEQAADKVLNKSASERKSIPTRPLSDNADSVKERNQNKATQSNLSKFLQFFTHIGKRSKKQKTEQDSFETEMTEMKWQTNAAFHDENKVSSEAIKKMATPEAQETKKKSSGIKSFIQGIIKFVKSHNPLARITRTKKAVVEETKEVEKSLPSNIEPYHNLVKQMINRLEQGEKKGSIPLGLFRVSGSKTTVEKAVTDFKETEGHQDLPSDWHDATSMIKNTVMSQKAPPMQKIKDLNIPAVHAEAVDQKKSEEEIIQNIQGAIFKLDSEERNFLKDYLKMIDLTYQKSWPKEQAPGDKDPFTAYLQGTPSLTNVFSHESLADALFASMGTQKTVNLGYVEFLVNNREKIFQTEKTEI
>NC_015702.1|WP_013924143.1|122716_124171_-|NADP-dependent-isocitrate-dehydrogenase
MGQKLIPITVAEGDGIGPEIMQAVLHILSAAKAPLDITTVEIGEKVYQKGEKTGISPETWDIIRKTKAFLKAPITTPQGGGFKSLNVTVRTSLGLYANVRPCVSYSPFVQTKHPKMDVVIVRENEEDLYTGIEYRQTLDTYHALKIITRPGCEKIIRYAFEYALANKRKKVTCFTKDNILKLTDGLFHKVFEEIAQEYPSIENEHWIIDIGAAKMADTPEAFDVIVMPNLYGDILSDVAAQIAGSVGLAGSANIGEHAAMFEAIHGSAPRRAGKNMANPSGLLMGAILMLVHVGLPDFATLVHNAWLTTLEQGIHTYDIYKENISKQLVGTKEFAEAVAQRIGQKPKILKEASYGEFNAILTQKHESKQTGIHKTTQGIDIFVDSNQEVEELEKKLTKVQDPDFKLSMISNRGVRVWPVKMPETACSDSWRCRYIASKKGSNLSHHQIARLLQKFADAQIDFVKTEHLCSFDGSPGYTLAQDEQ
>NC_015702.1|WP_006341527.1|124342_125302_+|KpsF/GutQ-family-sugar-phosphate-isomerase
MLKDLFAHAKNYLDYFFSHLDMQKSEKVLEICQNCKGVLIFTGVGKSGYVAKKVAATMTSTGTRALFLSPTDALHGDIGIVTSDDVFLILSKSGETDELLNLMPCLRNKGATIIGIVSNAKSRLAKACDIFIELPLQKELCPFDLVPTTSTTIQMIFGDVLAVELMTHKNFSKDQYGLNHPAGTIGKRVNVKVKDLMLTGSAIPICYPENKLVDILVELSNKKCGCVLIVDNQFILKGIFTDGDLRRALQKNGVQVLETPIGQIMSQKPQLITPDVLAFEAMRQMESDQKHPITVLPVVDDNHKVVGLIKMHDLVQSGI
>NC_015702.1|WP_013924145.1|125437_128509_+|preprotein-translocase-subunit-SecA
MFGILKKIFGTAQDRLVRKYFKSVALVNEWDAKFTSLSDEALRAKTNEFKQRLANGETLEQILPEAYAVVKNTCRRLCGTEVHVSGYDQKWDMVPYDVQIVGAIALHHGCIAEMMTGEGKTLTASMPLYLNALTGKSVHLVTVNDYLAKRDCEWIGTIFRWLGLTTASITNDTSTEERKKLYEADIVYGTASEFGFDYLRDNSMASRKEEQVQRGYYFAIIDEVDSILIDEARTPLIISGPVPVSRQMYDELKTGAADLVRMQRDLCNRLASEARKSLESLVDAEGKIRDKRDKKEEEIYQEALRKFWLVGKGTPHNKILKRVKEDPDLRAAIDKWDLYYYGDTNKEEKARALSELFMVVDEKSSEYELTDKGIAAWQNVAKEGSADDFVMLDISHEYLLIDEDPNLDTNAKMERKLAVQEEDAKRKERAHNLRQLLRAHLLMERDVDYIVQDGKIVIIDEHTGRPQPGRRFSDGLHQAIEAKEAVSIQKETQTYATVTLQNFFRMYKKLAGMTGTATTEAGEFKQIYKLEVLEIPTHRTCVRKDFNDEIYMTEREKYNAILKEVREVHEQGRPILIGTESVEVSEKLSRIFKQNKLPHTVLNAKQNDKEAEIVAHAGTRGAITIATNMAGRGTDIKLAPGVAELGGLYVMGTTRHQSRRIDRQLRGRCARQGDPGTSKFYVSFEDALLRLFASPRLTGILQKFRPPEGEPISASILNKSIETAQKRVEQRNYTIRKHTLEYDDVMNKQRQEVYAFRNEIIHTEHPEVIAVDILNTVCQTAADKYFKNHSEEGAWDPEGYRQWLIQHFPVSFEDGYFDNDHLEIEDLEKMASEKVIAAFEEKLKRENQKVVSAENSSLSPAKPAHEAIRNMMIRKNDRLWQEHLLTMDHLRSEVGLRAVGQRDPLMEFKQEAFTSFDEFGQNLRSEVAHDLFRFEIITRQVSIQDLLAGLQLETNRSLFAGLEVRPPQEGPGAPVQQIEGPSDMVEQPVMVQGPRVGRNDTCPCGSGKKYKKCCGLHKDDDEN

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Crispr_ID: NC_015702_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015702_2

2487998-2488109

Orphan

Consensus_repeat	Method
TGGCTACCATCTTCTGAGCGAAGACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015702_2

>merge|NC_015702|2|2487998-2488109|CRISPRCasFinder
TGGCTACCATCTTCTGAGCGAAGACTTGTTGGACTGTGGTCACTTTCATCTTCACTTTCTTCCAATTCAAAATCGCTTAAATCCTGGCTACCGTCTTCTGAGCGAAGACTTG

>NC_015702|2|2|2487998-2488109|CRISPRCasFinder
TGGCTACCATCTTCTGAGCGAAGACTTG	TTGGACTGTGGTCACTTTCATCTTCACTTTCTTCCAATTCAAAATCGCTTAAATCC
TGGCTACCGTCTTCTGAGCGAAGACTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015702.1\|WP_006342189.1\|2495514_2496504_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NC_015702.1\|WP_006342194.1\|2499172_2499964_-\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|259850
NC_015702.1\|WP_013925457.1\|2486214_2486898_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|372587
NC_015702.1\|WP_039377643.1\|2470627_2471611_-\|hypothetical-protein	unknown	unknown	unknown
NC_015702.1\|WP_148265798.1\|2488848_2490903_+\|permease	unknown	unknown	gnl\|CDD\|173879
NC_015702.1\|WP_006342177.1\|2479410_2480949_+\|Na(+)-transporting-NADH-quinone-reductase-subunit-B	unknown	unknown	gnl\|CDD\|179207
NC_015702.1\|WP_006342188.1\|2493899_2495246_-\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|234667
NC_015702.1\|WP_006342178.1\|2480929_2481844_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	unknown	unknown	gnl\|CDD\|235423
NC_015702.1\|WP_006342179.1\|2481868_2482501_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NC_015702.1\|WP_013925453.1\|2473906_2479168_-\|hypothetical-protein	unknown	unknown	unknown
NC_015702.1\|WP_013925461.1\|2492409_2493903_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_015702.1\|WP_013925460.1\|2490904_2492404_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_015702.1\|WP_013925455.1\|2483297_2485871_-\|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NC_015702.1\|WP_013925452.1\|2471868_2473905_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238382
NC_015702.1\|WP_013925454.1\|2482513_2483236_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|234895
NC_015702.1\|WP_013925456.1\|2486007_2486208_+\|hypothetical-protein	unknown	unknown	unknown
NC_015702.1\|WP_006342195.1\|2500123_2501932_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NC_015702.1\|WP_013925464.1\|2498321_2499176_-\|CDP-archaeol-synthase	unknown	unknown	gnl\|CDD\|366491
NC_015702.1\|WP_013925463.1\|2496765_2497581_+\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|366132
NC_015702.1\|WP_006342191.1\|2497619_2498312_-\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579

Protein	Function_ID	Function_description	E-value
NC_015702.1\|WP_006342189.1\|2495514_2496504_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	6.41315e-99
NC_015702.1\|WP_006342194.1\|2499172_2499964_-\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|259850	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases. Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS) catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase), catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidoglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS form homodimers and are mechanistically and structurally distinct from trans-IPPS, which lack the DDXXD motifs, yet require Mg2+ for activity.	3.83904e-124
NC_015702.1\|WP_013925457.1\|2486214_2486898_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|372587	pfam13386, DsbD_2, Cytochrome C biogenesis protein transmembrane region.	6.17777e-23
NC_015702.1\|WP_006342195.1\|2500123_2501932_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NC_015702.1\|WP_148265798.1\|2488848_2490903_+\|permease	gnl\|CDD\|173879	cd08514, PBP2_AppA_like, The substrate-binding component of the oligopeptide-binding protein, AppA, from Bacillus subtilis contains the type 2 periplasmic-binding fold. This family represents the substrate-binding domain of the oligopeptide-binding protein, AppA, from Bacillus subtilis and its closest homologs from other bacteria and archaea. Bacillus subtilis has three ABC-type peptide transport systems, a dipeptide-binding protein (DppA) and two oligopeptide-binding proteins (OppA and AppA) with overlapping specificity. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and also is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.17796e-127
NC_015702.1\|WP_006342177.1\|2479410_2480949_+\|Na(+)-transporting-NADH-quinone-reductase-subunit-B	gnl\|CDD\|179207	PRK01024, PRK01024, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
NC_015702.1\|WP_006342188.1\|2493899_2495246_-\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|234667	PRK00149, dnaA, chromosomal replication initiator protein DnaA.	0
NC_015702.1\|WP_006342178.1\|2480929_2481844_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.82617e-72
NC_015702.1\|WP_006342179.1\|2481868_2482501_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.09653e-95
NC_015702.1\|WP_013925460.1\|2490904_2492404_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	9.11762e-68
NC_015702.1\|WP_013925455.1\|2483297_2485871_-\|glycogen/starch/alpha-glucan-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NC_015702.1\|WP_013925452.1\|2471868_2473905_+\|hypothetical-protein	gnl\|CDD\|238382	cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.	0.00473835
NC_015702.1\|WP_013925454.1\|2482513_2483236_+\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|234895	PRK01061, PRK01061, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.71274e-121
NC_015702.1\|WP_013925461.1\|2492409_2493903_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.60356e-68
NC_015702.1\|WP_013925464.1\|2498321_2499176_-\|CDP-archaeol-synthase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.68829e-42
NC_015702.1\|WP_013925463.1\|2496765_2497581_+\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	7.44785e-38
NC_015702.1\|WP_006342191.1\|2497619_2498312_-\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	1.44774e-94

>NC_015702.1|WP_013925457.1|2486214_2486898_+|sulfite-exporter-TauE/SafE-family-protein
MSLLISMLPLYIFGNLHCMGMCGPLTLMIGQHRYRYFYFFGRMLSYMLVGMIAGGLGTVLHLLLKKFHVMESVSLLFGGSIFFMGIYTLMGWQYPGLLWISKRLAKFNAHLTTLILQDRAWPSFFFGFFTVLLPCGQTLIVFSACALSGDLWIGMLNGFAFALLTSPSLLLAMQAHHLLSKLKAHYALLMGGSAMIIGSISICRGLAEIELIEHLTFESPFFHLAIY
>NC_015702.1|WP_013925456.1|2486007_2486208_+|hypothetical-protein
MLAFIFKFNWYKVGLYTTLTVFMSMFGIVGYQAYARKSGNTGLDMAKIQQMRYEANQSFSSGPQSK
>NC_015702.1|WP_013925455.1|2483297_2485871_-|glycogen/starch/alpha-glucan-phosphorylase
MTQPAPDLDYQAEMLAAKTKHYLITTMGRISTEANNDEFYRAFSYALREEIMINWLATARTQNLRNVRKLYYISLEYLPGRILSNGICNLSAQSIVERVLQKMNRSYKDIIGRESDPALGNGGLGRLASCFLDSLATQNLPAQAYGLRYQYGIFEQQLWEGVQVEAPDCWLLNENPWEFRRDLRKVVVKYCGDTESTTNIHGDEVQKLANYEEVFALPYDIPIIGYSKTRDFSVVTLRLWSTKESPRNFQLQRYNAGSVGQAAENTTLTDVLYPNDNHETGKRIRLKQEFLLVSASLQDIIRHYLTNHDSFRSFADKVRIQINDTHPSLVIAELVRILTFKHDIPWKMAVEMTQACTGYTNHTILSEALEEWDQSLFQYLLPRQYKIVERLNYDFCNALRSKFPNDEHKVQRVSILENGKVRMANLAIMGSHSVNGVAALHTEILKNSVFKDFYDFFPEKFVNVTNGVTQRRWLLGCNPELAKFITKRIGDGWITDFTQIAKLAEFASDVDSQEEFLSIKKKNKQKLIEYIKQENQLHTADGATVLMSPIIDAHSLFDIQIKRIHEYKRQLMNALHLIMLYQEILENPHHNRIKRTAIFAGKAAAGYETAKDIIRLIFCIARRVNKDPAVHNLLKIVYVENYNVSKAEFLIPAADISEQISTAGTEASGTGNMKLAINGALTVGTEDGANIEMRQEIGDQWWPFSFGCSAEEIQKMKSENSYHSRDIYEANPQIRKAVDALRDRSFAQNDDEHHAFSDLYHKLIEMHYGGAPDRYFTLKDLESYYNVQKKVETLFMEPLKWAEYALHNIAGMSKFSIDYSIKNYCEKIWGLAPCPLDSEILDQVRDEFSQQDRCRIY
>NC_015702.1|WP_013925454.1|2482513_2483236_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MGDYTSLNLLGLFIQAVFIENFLLANFLGMCTYLACSTKLKTANGLGVAVVLVLTVAGILNWCVHQFITAPGALSWLSYFGIDAAKVDLNFLEFLLFISVIAGFTQMIEIIIEKVSPALYSSLGLYLPLIAVNCAILGACLFAVTRNYPFIPNLMYVFASGMGWWLAIALVAAIREKLAISNVVPGLRGMGITFIVSGLMAMAFQGFTGIKLATPSGSALENANSAIEMQTTPEPSQANF
>NC_015702.1|WP_006342179.1|2481868_2482501_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MTQQNPPAMSYLTSQLWSSNQILVAVLGICSALGVTNRLSVAITMGLSVSFVTAFSSLIVSALRKITPDSVRMITQLAIISVFVTIIDQFLRAYLFSVSKVLSVFVGLIITNCIVMGRTEGMAKNVSPLPAFMDGLGAGLGYMFVICIVGAIRELFGFGQLLNQQIIPLSWYASPEQPNAYENFALMVSPPAAFFIIGCLIWLFNIYNKK
>NC_015702.1|WP_006342178.1|2480929_2481844_+|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C
MSHPAPRGPSNAQVITFIVILSFICALILSVLASALAGPKEIAQELDRSKQMMIAAKILSHDGYFLMQDKEGKSIPAKFDKGGLLVPGTQQDIPTSAELIEIYKKRLKPFLVDDKGKRFTFQEANLNEEQYIADYKKSGYYKQPYRLLYEILPNQADEKDAKPIGYVIPVNGYGLWDAIYGYIALKPNGNTVIGISWYDQKETPGLGANIAEAPWQNLFPGKHIFQESPDGQTNFKSAPIGIYVVKGKVSEVLGDSPKAKSAVDGMAGATLTGNGVTDAYREVLNAYRPFLIAVHDENKNEEKT
>NC_015702.1|WP_006342177.1|2479410_2480949_+|Na(+)-transporting-NADH-quinone-reductase-subunit-B
MLRKFLDYQLSLAEKGKPLHPIRPLITAGDTFLYEAPCNTKVGPHIRDAIDVKRWMLIVVFALIPCILMAIWNTGLQSFVYSSGNYQLMNEFLSSSTSFQGYFDFALKDNRYLTILKEGLYALLPQALIAYAVGGLWEGIFACVRQHEISEGFLVTGILYALILPPTLPYWMTAVGVSVGIIFAKEVFGGSGMNIVNPALACRAFLFFTYPGRMSGNVWVGTDATKVRESLIAMNQDSKASTLDGYTQATPLAKFNVTPEIKRIHVDAIATNNLGQNVNTYPTIQEKFAEWNAHSANQATLGELSQEQMKNFVTSPLTEGGLGLSPGYYEDAYQFSALDHGIGSTNNDWGFFFGNKLGCMGETSTLACILGAILLIYTGVGAWRTMVAMALGMYLTALFFEFGSSFFAGAQGSWAPATFGFPAYKHLLLGGAAFGIVFMATDPVSSPSLDSAKWIYGLFCGIVTMLIRVVNPAYPEGVMLAILMGNVFAPLFDYYAARFYRKRRLSHVPSST
>NC_015702.1|WP_013925453.1|2473906_2479168_-|hypothetical-protein
MVVKVGIRIFLGIFIACSLLFFFQKPIFGALSEWYCQKYCESRLNGYFKYREMAFDNGYFVFHDVKVAHADSQKERFSARQLKIRPIFSWMPLYLDLSVVAEEPHFYLLQNEEDLLSGMSQGKPHPLFKIQGAVILKNGRITYASGLEQAFFDFEGQLQADKSLQILLKMGFSSNDRDAIQFKGASRLKEGEHRYACEFNAVDCAQLATFWKHLSPSTDTLAISQGQMNGEIAFNLMKGKAPSLEGNLKAHHIALALPMLGLKGEVGELNIQLDRHESPAKKFARNPFWKTFFNLIGTIQLSKDSYLASFEGDKLLWEVKDFQGGLIFLPEQGLIVNGDGICTYCDKIVPLHLEGKSTITAEQSVFEMSCFADTSLKSPSKIQFSIQNFHQPSAKAWLDIQNFEVNQIGILNQFFHKVYPVELLAGSIDASLFAQLDSFKISEINLRHFSARDFKFYIKPWRATFECDLMKGALLLNPKEFPVLGQSEAECSISNGELHIVGFEEKDWRLHEINTRFKIEQGTLQKFLAEGKIAGLAGFVEVDWLSPDEMMKLQFHGNAQEVVSLFPDYLKEKINNTFVSDQLVISAGVKRQSHARRQVEGSIHFFEKSKDGADTILFGFAVESEKIPRSLSEVQDKYEEFLRANFPENELQNLVEVHLLTEQKICGLVLRDGWFEAKELNLSKFVSPFVLGASSLELRGTGDFSGIFDSRNLMISYQACELALECESFLIEVKETVREKVSMASYPAIHYFNFEDGSQFGYLPVQQGSYFQKYNELLFEEINASIFFDRSQIHIRHIESFSDGIFFGGAIDIDFSGRQAGIYDVVIHSDIMNGKISQIQTFLSRFMEPSPFLKMPMEGLVSYRQRGGMLNLTFSPETYTVIANVEGALTDGKLLWENDQMRFQDFSLHFDYDHQAKSIIFSDLEGVFLVGAAHQLEEYDVIGDYIRLLDYTQNQAEFDVWISDKSRDILRVVGNSSNRMNLTGDKVIQFTFDHELTHFGDVHPNAFDLTLKEDWQIDDLNFEFGFNISTLVHDFQRLNQTGLFFPLKSSAKLLDQLKKTQGEFQVAIRYDKIAEQYNYQMLGSHLVCDENYHFDSCLLTGRKKGSAWAIDQLQFDQLSLSADILRKDYGWNVNFLGIRFDNALLAGFEGIYYDQNSSFKGKLNLLEVDLGNLPKWKIFQKMIHENLVDGKINAAGEVRIQHLEESKDWRVELLLQTDFKNFSAKGINFDQTEKVFCHFVSDRGMTLRNFKTAFLHAKERNPKVAIDIEKMDFDFKNGEAAIRGCAFSLPANNLEWAVENFQQAFPDFISHTYGEEIKKIKSSGEVQGKLDVDFALPHIAFHLEMQDGTYRFYDSEYVCKNLSFEKDPFESKVIFQSPYNDHLFWVLVRSSAPKHDSGEMLISEHYPEHHFEKKVGVQLLWRDTLSEGFIIDRVEGSLLGSSVHLARVPSASTDRVYEGTTLIQIDQALRYLPKNLLEKAQNCSLNGTCTLSGQWILQKDSLASGENLYFVGQLYGEDLVFRECLFDSLTAEVEYHQNEIAFNNVQVNDPAGKLEIAQMSLKAENEDVILNIPQVNVSDFRPSILRDPSGMITTPATPFVIRHLEIQNVHGSLINSDQITGKGKFTFTNSKKKVLPNTIFAIPGEILSRIGLDVTVLTPVMGSIYYKIKDGKIYFTRFKDLYSNGRLSKFYLPNTSYQSYMDFDGNLHVQVRMKQYNLLFKLAELLTITVQGTVQKPKYSLQKQPQSEHEVRK
>NC_015702.1|WP_013925452.1|2471868_2473905_+|hypothetical-protein
MQLSFGQIFEAFDGCAKSTPLKISTKEIKDKPYYSVEISPSSFWTLGTKRRKIHQQNEETLSHFMKLIQNTAHLDAQPKLLEKLQAKYDKGTKLTAGRVRKIYRKCIASHLDGPRQIACLAKKESDRVIFDETSTAYKTQKSCFRAFRKKIKNENRNAISKCYTSFVEEWGKERVDRTLQRYHINMRNLHAKGKPLTAGMINKISLGIADSYAEDLYLTWDRVKQVCLYRAPSEILPLREKRKLAELLGTDSDEALKKMLITLCEDHLTKAYDELPHELHGLFSKATLLNADELELMFQGKRIEGIITGYPPLSSLYFHYPKDVEDRGRLQLYQTIMTLSQRVFNENIPKASDEIYAKALPKLTVSEGMLVPSPSEISDDNGSNWYLIKKRIEPGGSKVALHLSQLHKGGIQLPEILAYRSTTTIPTQQKCIETVLDDSWMGGPGYFPSYRWKGIKEENEVLFSNLDIPLKVLGHSLGGTHAQLFLINRLKKRSKSPDRPALPNRDIHIISFDAPATSVKDATEAGNYLSTNPRIAVNYFFSYEDSIPGAGGAFLGFDMAKEAINKVRCTTLGTANIDHPALKLHPHGRFYYLSPETYYTEMATEVENFSSQAWRAKVELIRKTVSFFLFPPVFVLGYTKRFFVGRTGKPSGIRFIFNKIFGIKPKPKKIKNYGLNLA
>NC_015702.1|WP_039377643.1|2470627_2471611_-|hypothetical-protein
MTNKDRYIRFQQVVNLMKKNLRLGSAALFVLLCFGIARGYYNLTDDFRIGNYMHEVPYHIAWENQPLSHEEQANLDKILDQKFEYLGKGAQSFAFISEDNKYILKLFKFKHLKPSWLVEWLPPVGILNEIRENERIKKLEKLESVFNGYNLAYDCHRKESGLLYVHLNRETCPGKIVHVTDKLGLPHQLNLSEIIYVVQEKAVTTRQEMTNLLSKGFVLTAIDRVNQIFDLYLQEYAKGIYDRDHGVMHNTGFVHGETVYPIHLDIGKLSPSDNMKNLEVYRSDLMKVVAKFDLWFKENYPQYYPELVQAMENRLSTIFGEEFSLQS
>NC_015702.1|WP_148265798.1|2488848_2490903_+|permease
MLYWSSVLIENNLKIVQTDIGQIRSELYNLKNESERIRDTISNLPRQSGEYSPSSSSLSLQKPIVRPHMDPKLPNLLTEDPFYTKILPKMLPKHFSPQGIFRQTSIGKPDNLHPFSPWAEISQWQSLCSISLANLEFGRYETFATGMAIKMEERIDPEDGGFEYWIHLRDDVFWEPLEQRFFSDRFTLAPHFLHKHQVTAHDFKFFFDAFMNPYNQQPSAVTSRNQFQDVQKFEVLDDFTLVIRWKTHEFKNEKGEVVKRPLYRAKLLTGSLNPLASFVYKYFPDGQKIIPDDTDPDTYQTNSVWAQNFGMHWAQNIIPSCGAWKLDGMTERMIQFTRNNNFYSPDRALMERREVEFKNTPDAEWQTFKTGDIQASFLPQGKLLELQDFLSSPLYQEQAKAGKTIHQLNYIGNMFFYIGWNQKTPFFRDKTVRQALTMAIDRNRIIQQNLNGLGVEINGPFTPNSPSYDHSIQPWPFDPDKARRLLAEAGWEDHDGDGVIDKKIDGVYVPFHFKLTYFVKNSSSKSICEYIVTALKDVGIIGVLNGVDMADLSNDFESKAFEAIHLGWGQGTPPEDMRQIWHSSGAKEKGSSNGIGFSNAEVDQIIDDLDYEYNPEKRLALYHRFSQIIHEEAPYVFLYAPMIKLLYREELQNVFLPIDRQDLIPGANVAVPDSNIYWLKKIQA
>NC_015702.1|WP_013925460.1|2490904_2492404_+|ABC-transporter-permease
MLTYILRRLLLLPLTLFCIILVNFVIINLAPGDPYTQTELSPQGMAIRKDDRAIAFGADDRYLQFREFYGLTLPILFNNWSNISLEKVQKDLWMLVHRKEAPEAPEMAVKDYDDLRIKFGDQSRFIMPKLLTILLNPQTPRNILEMASRFFIRGGTQQGFVGSHLTEQQKIFNRKIGSDNFFLRSLVITSLDPSERVQDKIAALKKWYDAESVNYQFEPTQAQKWAIFFFDTRFYRYFSRVLTLDFGTLRNDQTKSVIDEVTRRFKYSLTLAILPMIVTFCLCQIFGFLMAYKQNQWQDLSINFVFLILYAIPIFVVAPFLIEKVGLNHYFPFTSTPIPISGFTSPDYIYNQKNSFQRIVDVFSHIALPLMAIIYGTLAASSRLSRTAVLEVLRQDYVRTAKAKGSPTSTILVRDVGRNASITIVTALAGSLGAILGGSLIVETLFDINGYGKFFYDGVINRDYNVIMFSTLAGSLLTLIGYLAADIAYTLLDPRVTLD
>NC_015702.1|WP_013925461.1|2492409_2493903_+|ABC-transporter-permease
MDINSHYDPYWSMIWKQFKKHPMGMIGLVIVCLFLFVGIYAPLLASSKPLFVIFENTWFFPLFRYLFYPGFYTKRLDIFFNLLMFTTPFALLGLWMLRNHPKKLRCVLMAIFFIQMALFLGVAFQTSQDPGASPQNKQSSSYDWKAEVKQMNPYARLNLILRYQQRAKQHARLVKMVEAQAGEVSKSLPKITSLWNLDQENDLFILEQQQKILENSSPDSDSHQLALDKITYIRDRQKWLEAQSQKLSFQIMPLIRHFHWEEDAGGDQNLNRYIEWWELTRVNRKDLVSALIFGTRISLVVGILSVGAALLIGIPIGAFAGYYGGKVDIVVCRLLEIWESMPTFFMLLMIVAILQNKSIFLVIAIIGLFGWTTFSRYIRGEFLKQRNLSYVEACQSLGFSNGYIMFSHILPNAIPPLLTLLPFAIMGAITSEAGLSFLGLGEEGSCSWGVLMDEGRTAFPGESYLLWPPAILLTTLLIAIALVGDALRDALDPKMHR
>NC_015702.1|WP_006342188.1|2493899_2495246_-|chromosomal-replication-initiator-protein-DnaA
MSANDTQNAWDQFLKYVKGHCSAAAFGNWLAPIKVLESTAEEITLEVPNVFVKEYLLSNYKKELKLFFPVTTTGEPQIEFVVVAPEKKSAAIPTPTVDHHPVQQNAQSHEVKLNENYRFETFIEGPTNMFVKSAAIGVATRPGQSYNLLFIHGGVGLGKTHILHSIGHYVKDHHKKLRVQCITTEAFINDLVDSLRNKSVDKMKRFYRSDVDVLLVDDIQFLQNRLNFEEEFCHTFETLINQKKQIVITSDKPPSQLKLSERLIARMEWGLVAHVGMPDLETRVAILQHKAQQKGLEIPNNVAFFIAEHIYNNVRQLEGAVNRLCAHCKLLDLNITEELVEKTLREMMQQAPNKKISVEQILKSVATVFQVRVNDLKGSTRTKDIALPRQVAMYLAYKMINESLQMLGASFGKTHSTILHACKTIEKKVATNEILRRQIGMVERNIAA
>NC_015702.1|WP_006342189.1|2495514_2496504_-|ferrochelatase
MMDTKSKGYLLVNFGGPRSEDEIRPFLESLLTDQDVIRTRLPEFLHRLFFKRVAKKRAIKISKEYALMGGKSPIYEDTELLAECLREKLQAPLLTFHRYLPSTHAGFIEALEEMECEEIRVLPLFPQFTYATTGSVARWFERYLPSMTTLKMRWIKSYAAYPTFIQAHQEHIRDFLIKNQLQEQEVILLFSAHGIPLQFVETGDLYTDECRASVRAVMQAFPGALGRLAYQSKFGPGEWVKPYTIDVCEGIKEWNMGRKHVVFIPISFTSDHIETLVEIENEYMSKVRAAGLYAYRVPCLTLNPLWIQAIIELFEEGNFCLNQMLVRRR
>NC_015702.1|WP_013925463.1|2496765_2497581_+|amino-acid-ABC-transporter-substrate-binding-protein
MKRLKFFNSPLPEIKPTLGKFLAFVAVLVGLAWFFFFSESPNPRSLEYKVFRIGRDTSWYPLQLQGKEKNMVAFTNELLLAIAKTSGFHFEISDVRSHTLFENLERGDYDAVLSSLMPNQLNRQKYEFSDPFFLVGPVLVVNQDSPAKSLVDMEGKIVGVQRSSSLVFNIAQYPSMIAPYDQITVAFDQLLQDKIDGVITDLLTAYNHTHGYYAGQLKIIPPPLTNEGLRLISKHGVAQTYLLTHFNEGLKKIKENGEYQKLLTKWGLAQI
>NC_015702.1|WP_006342191.1|2497619_2498312_-|(d)CMP-kinase
MIITIDGPIATGKSTIAKTLAEEIGYIYFDTGAMYRCLTYAYLKEKIDLDQPEEVTAFLDRFQFDVKIRHRERFYYVGEEDVTDQIRGSEVTEAVSIVSAVPEVRERLVNIQRELAIGVNAVFEGRDMGTVVFPDAKIKIFLVGDPEIRARRRYEEVRKKYPKDTEGLTLQKVLEDINERDRKDTTRAISPLKQPEGACVIDTSNLTVDEIVFKILEFKDSLRTHIPPTE
>NC_015702.1|WP_013925464.1|2498321_2499176_-|CDP-archaeol-synthase
MMTQHLKYRLIYSALAATILIFLISFSQYSFFRPLFSLAVSAIVGVAVWEYYQMAKAKGFQPLATVGIVFSVLYVYAVFLSTQMQDAQVVPEITLGIALLTFFIYSFYGGASPFVNLAITLFGIAYLAIPLSYTLSINYFPFNGAEDGRWWLFYLLLVAKSTDTGAFFTGRLMGKRRMVPYISPKKTWEGAWGGVLTSVAVSVIFYLGIHLFSKPPIHLSFWESIWLAGLISVVAQIGDLAESLLKRDAGIKDSNQLPGLGGVLDIVDSLIFTLPLLYIFLKIH
>NC_015702.1|WP_006342194.1|2499172_2499964_-|di-trans,poly-cis-decaprenylcistransferase
MFSEFMLSSNAMFSPLTSDTIYQADDLVSYDRSITPRHVAIIPDGNRRWAKKQQASAKVGHREGADNLIEIVKACKELGVQVVTFYAFSTENWARPQEEVQALMWLLDVYLVEQRETMLQEGICFDTIGDLSKIPANVAETIAETKRFTKQCDQIRMVLAVNYGGRDDICRAVNQIVDDCMQQRGTPEKITEEAIAKYLDTADIGDPDLLIRTSGEWRISNFLLWQISYAEVYVTDVLWPDFTPAHLLEALYDFQKRKRRLGG
>NC_015702.1|WP_006342195.1|2500123_2501932_-|elongation-factor-4
MYTYDRKKIRNFSIIAHIDHGKSTLADRLLELTHTVEARDMQEQLLDDMDLERERGITIKAHPVTMHYLAKDGETYQINLIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVQAQTLANVHLAIERNLEIVPVINKIDLPTANVEEVRKQIEDVIGIDASEAICCSAKSGIGIDGILEDILQKIPAPQEPQDDVLRALVFDSHYDNYRGVMVYVRIMSGEIKKGSLIKMMANDRTFEVLEVGVFAPNERPVSELRAGEVGYIVANIKKTSDVKVGDTITLQKYPAAEALPGFRHISPVVFAGIYPIDSTDFEALRDALTKLQLNDTALHIEQESSLALGFGFRCGFLGLLHLEIIFERIQREFDLDVISTAPSVIYRFLLSDGQVLQIDNPAHYPDPTFIDTVEEPWVKCHIIIPSDYLGAIMSLGMDKRGNCVKTETLDSKRLLLTYRFPLNEIITDFNDKLKSITRGYGSFDYEFDSYEPSDIIKLEIRVNEEPVDAFSCLVHRTKAESKGRAICEKLVEVIPQQLFKVPIQAAIGGKVVARETIKAMSKNVTAKCYGGDISRKRKLWEKQKKGKKRMKEIGKVNIPQSAFMEVLKAGG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage