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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017344 Staphylococcus aureus subsp. aureus ECT-R 2 plasmid pLUH02, complete sequence 0 crisprs csa3 0 0 0 0
NC_017343 Staphylococcus aureus subsp. aureus ECT-R 2, complete genome 10 crisprs cas3,DEDDh,DinG,csa3,WYL 9 3 6 2
NC_017346 Staphylococcus aureus subsp. aureus ECT-R 2 plasmid pLUH01, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NC_017343
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017343_1 392498-392599 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017343_2 783487-783565 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017343_3 788942-789211 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017343_4 832214-832295 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017343_5 1573002-1573086 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017343_6 1607432-1607579 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017343_7 1999761-1999842 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017343_8 2129018-2129098 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017343_9 2141339-2141424 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017343_10 2249379-2249459 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 154386-154407 0 1.0
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 277462-277483 0 1.0
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 617073-617094 0 1.0
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 742810-742831 0 1.0
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 832287-832308 0 1.0
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 1307186-1307207 0 1.0
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 1573078-1573099 0 1.0
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 1587612-1587633 0 1.0
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 1897241-1897262 0 1.0
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 154386-154407 0 1.0
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 277462-277483 0 1.0
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 617073-617094 0 1.0
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 742810-742831 0 1.0
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 832287-832308 0 1.0
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 1307186-1307207 0 1.0
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 1573078-1573099 0 1.0
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 1587612-1587633 0 1.0
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 1897241-1897262 0 1.0
NC_017343_7 7.1|1999785|34|NC_017343|CRISPRCasFinder 1999785-1999818 34 NC_017343.1 783486-783519 0 1.0
NC_017343_7 7.1|1999785|34|NC_017343|CRISPRCasFinder 1999785-1999818 34 NC_017343.1 1095549-1095582 0 1.0
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 902519-902540 1 0.955
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 1607339-1607360 1 0.955
NC_017343_3 3.1|788978|22|NC_017343|CRT 788978-788999 22 NC_017343.1 1607572-1607593 1 0.955
NC_017343_3 3.2|789036|23|NC_017343|CRT 789036-789058 23 NC_017343.1 741581-741603 1 0.957
NC_017343_3 3.2|789036|23|NC_017343|CRT 789036-789058 23 NC_017343.1 741859-741881 1 0.957
NC_017343_3 3.2|789036|23|NC_017343|CRT 789036-789058 23 NC_017343.1 1307302-1307324 1 0.957
NC_017343_3 3.2|789036|23|NC_017343|CRT 789036-789058 23 NC_017343.1 1897299-1897321 1 0.957
NC_017343_3 3.2|789036|23|NC_017343|CRT 789036-789058 23 NC_017343.1 2238550-2238572 1 0.957
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 902519-902540 1 0.955
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 1607339-1607360 1 0.955
NC_017343_3 3.3|789095|22|NC_017343|CRT 789095-789116 22 NC_017343.1 1607572-1607593 1 0.955
NC_017343_3 3.4|789153|23|NC_017343|CRT 789153-789175 23 NC_017343.1 741581-741603 1 0.957
NC_017343_3 3.4|789153|23|NC_017343|CRT 789153-789175 23 NC_017343.1 741859-741881 1 0.957
NC_017343_3 3.4|789153|23|NC_017343|CRT 789153-789175 23 NC_017343.1 1307302-1307324 1 0.957
NC_017343_3 3.4|789153|23|NC_017343|CRT 789153-789175 23 NC_017343.1 1897299-1897321 1 0.957
NC_017343_3 3.4|789153|23|NC_017343|CRT 789153-789175 23 NC_017343.1 2238550-2238572 1 0.957
NC_017343_4 4.1|832238|34|NC_017343|CRISPRCasFinder 832238-832271 34 NC_017343.1 1307282-1307315 1 0.971
NC_017343_5 5.1|1573028|33|NC_017343|CRISPRCasFinder 1573028-1573060 33 NC_017343.1 1307283-1307315 1 0.97
NC_017343_7 7.1|1999785|34|NC_017343|CRISPRCasFinder 1999785-1999818 34 NC_017343.1 1693051-1693084 1 0.971
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 796230-796260 1 0.968
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 796286-796316 1 0.968
NC_017343_3 3.2|789036|23|NC_017343|CRT 789036-789058 23 NC_017343.1 1395621-1395643 2 0.913
NC_017343_3 3.2|789036|23|NC_017343|CRT 789036-789058 23 NC_017343.1 1999842-1999864 2 0.913
NC_017343_3 3.4|789153|23|NC_017343|CRT 789153-789175 23 NC_017343.1 1395621-1395643 2 0.913
NC_017343_3 3.4|789153|23|NC_017343|CRT 789153-789175 23 NC_017343.1 1999842-1999864 2 0.913
NC_017343_6 6.2|1607539|22|NC_017343|PILER-CR 1607539-1607560 22 NC_017343.1 1095727-1095748 2 0.909
NC_017343_6 6.2|1607539|22|NC_017343|PILER-CR 1607539-1607560 22 NC_017343.1 1999730-1999751 2 0.909
NC_017343_6 6.2|1607539|22|NC_017343|PILER-CR 1607539-1607560 22 NC_017343.1 1999847-1999868 2 0.909
NC_017343_7 7.1|1999785|34|NC_017343|CRISPRCasFinder 1999785-1999818 34 NC_017343.1 1311656-1311689 2 0.941
NC_017343_7 7.1|1999785|34|NC_017343|CRISPRCasFinder 1999785-1999818 34 NC_017343.1 2688829-2688862 2 0.941
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 48999-49029 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 353760-353790 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 617128-617158 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 796342-796372 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 832550-832580 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 998516-998546 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 1101206-1101236 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 1307241-1307271 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 1395674-1395704 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 1587666-1587696 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 1895893-1895923 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 2238603-2238633 2 0.935
NC_017343_10 10.1|2249404|31|NC_017343|CRISPRCasFinder 2249404-2249434 31 NC_017343.1 2414128-2414158 2 0.935

1. spacer 3.1|788978|22|NC_017343|CRT matches to position: 154386-154407, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

2. spacer 3.1|788978|22|NC_017343|CRT matches to position: 277462-277483, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 3.1|788978|22|NC_017343|CRT matches to position: 617073-617094, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 3.1|788978|22|NC_017343|CRT matches to position: 742810-742831, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 3.1|788978|22|NC_017343|CRT matches to position: 832287-832308, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 3.1|788978|22|NC_017343|CRT matches to position: 1307186-1307207, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 3.1|788978|22|NC_017343|CRT matches to position: 1573078-1573099, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 3.1|788978|22|NC_017343|CRT matches to position: 1587612-1587633, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 3.1|788978|22|NC_017343|CRT matches to position: 1897241-1897262, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 3.3|789095|22|NC_017343|CRT matches to position: 154386-154407, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 3.3|789095|22|NC_017343|CRT matches to position: 277462-277483, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 3.3|789095|22|NC_017343|CRT matches to position: 617073-617094, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 3.3|789095|22|NC_017343|CRT matches to position: 742810-742831, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 3.3|789095|22|NC_017343|CRT matches to position: 832287-832308, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 3.3|789095|22|NC_017343|CRT matches to position: 1307186-1307207, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 3.3|789095|22|NC_017343|CRT matches to position: 1573078-1573099, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 3.3|789095|22|NC_017343|CRT matches to position: 1587612-1587633, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 3.3|789095|22|NC_017343|CRT matches to position: 1897241-1897262, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 7.1|1999785|34|NC_017343|CRISPRCasFinder matches to position: 783486-783519, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

20. spacer 7.1|1999785|34|NC_017343|CRISPRCasFinder matches to position: 1095549-1095582, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

21. spacer 3.1|788978|22|NC_017343|CRT matches to position: 902519-902540, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

22. spacer 3.1|788978|22|NC_017343|CRT matches to position: 1607339-1607360, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

23. spacer 3.1|788978|22|NC_017343|CRT matches to position: 1607572-1607593, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

24. spacer 3.2|789036|23|NC_017343|CRT matches to position: 741581-741603, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

25. spacer 3.2|789036|23|NC_017343|CRT matches to position: 741859-741881, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

26. spacer 3.2|789036|23|NC_017343|CRT matches to position: 1307302-1307324, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

27. spacer 3.2|789036|23|NC_017343|CRT matches to position: 1897299-1897321, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

28. spacer 3.2|789036|23|NC_017343|CRT matches to position: 2238550-2238572, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

29. spacer 3.3|789095|22|NC_017343|CRT matches to position: 902519-902540, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

30. spacer 3.3|789095|22|NC_017343|CRT matches to position: 1607339-1607360, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

31. spacer 3.3|789095|22|NC_017343|CRT matches to position: 1607572-1607593, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

32. spacer 3.4|789153|23|NC_017343|CRT matches to position: 741581-741603, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

33. spacer 3.4|789153|23|NC_017343|CRT matches to position: 741859-741881, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

34. spacer 3.4|789153|23|NC_017343|CRT matches to position: 1307302-1307324, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

35. spacer 3.4|789153|23|NC_017343|CRT matches to position: 1897299-1897321, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

36. spacer 3.4|789153|23|NC_017343|CRT matches to position: 2238550-2238572, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

37. spacer 4.1|832238|34|NC_017343|CRISPRCasFinder matches to position: 1307282-1307315, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

38. spacer 5.1|1573028|33|NC_017343|CRISPRCasFinder matches to position: 1307283-1307315, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

39. spacer 7.1|1999785|34|NC_017343|CRISPRCasFinder matches to position: 1693051-1693084, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

40. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 796230-796260, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

41. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 796286-796316, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

42. spacer 3.2|789036|23|NC_017343|CRT matches to position: 1395621-1395643, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

43. spacer 3.2|789036|23|NC_017343|CRT matches to position: 1999842-1999864, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

44. spacer 3.4|789153|23|NC_017343|CRT matches to position: 1395621-1395643, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

45. spacer 3.4|789153|23|NC_017343|CRT matches to position: 1999842-1999864, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

46. spacer 6.2|1607539|22|NC_017343|PILER-CR matches to position: 1095727-1095748, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattggtgatccaatttct	Protospacer
********* * **********

47. spacer 6.2|1607539|22|NC_017343|PILER-CR matches to position: 1999730-1999751, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

48. spacer 6.2|1607539|22|NC_017343|PILER-CR matches to position: 1999847-1999868, mismatch: 2, identity: 0.909

tgaaattggggttccaatttct	CRISPR spacer
tgaaattgggaatccaatttct	Protospacer
**********. **********

49. spacer 7.1|1999785|34|NC_017343|CRISPRCasFinder matches to position: 1311656-1311689, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

50. spacer 7.1|1999785|34|NC_017343|CRISPRCasFinder matches to position: 2688829-2688862, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

51. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 48999-49029, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

52. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 353760-353790, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

53. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 617128-617158, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

54. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 796342-796372, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

55. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 832550-832580, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

56. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 998516-998546, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

57. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 1101206-1101236, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

58. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 1307241-1307271, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

59. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 1395674-1395704, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

60. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 1587666-1587696, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

61. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 1895893-1895923, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

62. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 2238603-2238633, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

63. spacer 10.1|2249404|31|NC_017343|CRISPRCasFinder matches to position: 2414128-2414158, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017343_3 3.2|789036|23|NC_017343|CRT 789036-789058 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NC_017343_3 3.2|789036|23|NC_017343|CRT 789036-789058 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NC_017343_3 3.4|789153|23|NC_017343|CRT 789153-789175 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NC_017343_3 3.4|789153|23|NC_017343|CRT 789153-789175 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NC_017343_9 9.1|2141365|34|NC_017343|CRISPRCasFinder 2141365-2141398 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NC_017343_9 9.1|2141365|34|NC_017343|CRISPRCasFinder 2141365-2141398 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 3.2|789036|23|NC_017343|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 3.2|789036|23|NC_017343|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 3.4|789153|23|NC_017343|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 3.4|789153|23|NC_017343|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 9.1|2141365|34|NC_017343|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 9.1|2141365|34|NC_017343|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 720659 : 728480 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 740451 : 754334 12 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 1000026 : 1008499 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1622671 : 1631714 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_5 1755170 : 1811994 52 Staphylococcus_phage(95.24%) protease,tRNA NA
DBSCAN-SWA_6 1910138 : 2004725 113 Staphylococcus_phage(86.84%) holin,capsid,portal,terminase,tail,tRNA,integrase,head,protease attL 1906575:1906599|attR 2007011:2007035
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_017343.1|WP_000681968.1|1945897_1946074_-|hypothetical-protein 1945897_1946074_- 58 aa aa NA NA NA 1910138-2004725 yes
NC_017343.1|WP_000990056.1|1946316_1946415_-|hypothetical-protein 1946316_1946415_- 32 aa aa NA NA NA 1910138-2004725 yes