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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017299 Clostridium botulinum H04402 065, complete genome 9 crisprs DEDDh,csa3,WYL,cas14j,RT,cmr6gr7,cmr5gr11,cmr4gr7,csx1,cmr3gr5,cas10,cmr1gr7,cas6,casR,cas3 1 12 8 0

Results visualization

1. NC_017299
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017299_1 848632-848720 Orphan III-B
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017299_2 2310240-2310337 TypeIII-C III-B
1 spacers
cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017299_3 2310663-2310889 TypeIII-C III-B
3 spacers
cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017299_4 2312860-2313087 TypeIII III-B
3 spacers
cmr6gr7,cmr5gr11,cmr4gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017299_6 2319824-2320039 TypeIII III-B
3 spacers
cmr6gr7,cmr5gr11,cmr4gr7,csx1,cmr3gr5,cas10,cmr1gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017299_5 2319326-2319553 TypeIII III-B
3 spacers
cmr6gr7,cmr5gr11,cmr4gr7,csx1,cmr3gr5,cas10,cmr1gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017299_7 2333111-2333668 TypeIII III-B
8 spacers
cas6,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017299_8 2335819-2336173 TypeIII III-B
5 spacers
cas6,cmr1gr7,cas10,cmr3gr5,csx1,cmr4gr7,cmr5gr11,cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017299_9 2446898-2447047 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_017299_9 9.2|2446964|18|NC_017299|CRT 2446964-2446981 18 NC_017299.1 2446880-2446897 1 0.944
NC_017299_9 9.2|2446964|18|NC_017299|CRT 2446964-2446981 18 NC_017299.1 2446892-2446909 1 0.944
NC_017299_9 9.2|2446964|18|NC_017299|CRT 2446964-2446981 18 NC_017299.1 2447036-2447053 1 0.944

1. spacer 9.2|2446964|18|NC_017299|CRT matches to position: 2446880-2446897, mismatch: 1, identity: 0.944

tggtttatcctctggttt	CRISPR spacer
tggcttatcctctggttt	Protospacer
***.**************

2. spacer 9.2|2446964|18|NC_017299|CRT matches to position: 2446892-2446909, mismatch: 1, identity: 0.944

tggtttatcctctggttt	CRISPR spacer
tggtttattctctggttt	Protospacer
********.*********

3. spacer 9.2|2446964|18|NC_017299|CRT matches to position: 2447036-2447053, mismatch: 1, identity: 0.944

tggtttatcctctggttt	CRISPR spacer
tgttttatcctctggttt	Protospacer
** ***************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017299_7 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333603-2333638 36 NZ_CP014152 Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence 162522-162557 0 1.0
NC_017299_7 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333603-2333638 36 NZ_CP013684 Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence 136408-136443 0 1.0
NC_017299_7 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333603-2333638 36 NZ_CP013710 Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence 116828-116863 0 1.0
NC_017299_7 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333603-2333638 36 NC_025146 Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111 110843-110878 0 1.0
NC_017299_7 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333603-2333638 36 NC_012654 Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence 250707-250742 1 0.972
NC_017299_7 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333603-2333638 36 NZ_CP031095 Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence 131441-131476 1 0.972
NC_017299_3 3.1|2310692|36|NC_017299|PILER-CR 2310692-2310727 36 NZ_CP013709 Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence 120963-120998 2 0.944
NC_017299_3 3.1|2310692|36|NC_017299|PILER-CR 2310692-2310727 36 NZ_CP013844 Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence 166400-166435 2 0.944
NC_017299_3 3.4|2310694|34|NC_017299|CRISPRCasFinder 2310694-2310727 34 NZ_CP013709 Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence 120963-120996 2 0.941
NC_017299_3 3.4|2310694|34|NC_017299|CRISPRCasFinder 2310694-2310727 34 NZ_CP013844 Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence 166400-166433 2 0.941
NC_017299_6 6.3|2319975|36|NC_017299|CRISPRCasFinder 2319975-2320010 36 NZ_CP006909 Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence 133437-133472 2 0.944
NC_017299_6 6.3|2319975|36|NC_017299|CRISPRCasFinder 2319975-2320010 36 NC_010418 Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence 156920-156955 2 0.944
NC_017299_6 6.6|2319985|36|NC_017299|PILER-CR 2319985-2320020 36 NZ_CP006909 Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence 133437-133472 2 0.944
NC_017299_6 6.6|2319985|36|NC_017299|PILER-CR 2319985-2320020 36 NC_010418 Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence 156920-156955 2 0.944
NC_017299_7 7.3|2333272|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333272-2333307 36 NZ_CP013709 Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence 100389-100424 2 0.944
NC_017299_7 7.3|2333272|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333272-2333307 36 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 102721-102756 2 0.944
NC_017299_7 7.3|2333272|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333272-2333307 36 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 113437-113472 2 0.944
NC_017299_7 7.3|2333272|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333272-2333307 36 NZ_CP013844 Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence 145826-145861 2 0.944
NC_017299_7 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333603-2333638 36 NZ_CP006909 Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence 263676-263711 2 0.944
NC_017299_7 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333603-2333638 36 NC_010418 Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence 22954-22989 2 0.944
NC_017299_7 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder 2333603-2333638 36 NZ_CP013700 Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence 32871-32906 2 0.944
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NZ_CP045607 Bacillus cereus strain SB1 plasmid p1, complete sequence 487812-487841 2 0.933
NC_017299_6 6.3|2319975|36|NC_017299|CRISPRCasFinder 2319975-2320010 36 NZ_CP031095 Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence 1711-1746 3 0.917
NC_017299_6 6.3|2319975|36|NC_017299|CRISPRCasFinder 2319975-2320010 36 NZ_CP013700 Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence 156752-156787 3 0.917
NC_017299_6 6.3|2319975|36|NC_017299|CRISPRCasFinder 2319975-2320010 36 NC_012654 Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence 110413-110448 3 0.917
NC_017299_6 6.3|2319975|36|NC_017299|CRISPRCasFinder 2319975-2320010 36 NC_010379 Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence 23508-23543 3 0.917
NC_017299_6 6.6|2319985|36|NC_017299|PILER-CR 2319985-2320020 36 NZ_CP031095 Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence 1711-1746 3 0.917
NC_017299_6 6.6|2319985|36|NC_017299|PILER-CR 2319985-2320020 36 NZ_CP013700 Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence 156752-156787 3 0.917
NC_017299_6 6.6|2319985|36|NC_017299|PILER-CR 2319985-2320020 36 NC_012654 Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence 110413-110448 3 0.917
NC_017299_6 6.6|2319985|36|NC_017299|PILER-CR 2319985-2320020 36 NC_010379 Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence 23508-23543 3 0.917
NC_017299_6 6.2|2319918|28|NC_017299|CRISPRCasFinder 2319918-2319945 28 NZ_CP023496 Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence 119840-119867 4 0.857
NC_017299_4 4.2|2312954|37|NC_017299|CRISPRCasFinder 2312954-2312990 37 NZ_CP020425 Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence 44200-44236 5 0.865
NC_017299_4 4.2|2312954|37|NC_017299|CRISPRCasFinder 2312954-2312990 37 FN668942 Clostridium difficile BI1 plasmid pCDBI1, complete sequence 42934-42970 5 0.865
NC_017299_4 4.2|2312954|37|NC_017299|CRISPRCasFinder 2312954-2312990 37 NZ_CP011969 Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence 39522-39558 5 0.865
NC_017299_4 4.2|2312954|37|NC_017299|CRISPRCasFinder 2312954-2312990 37 NZ_CP029156 Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence 3-39 5 0.865
NC_017299_4 4.2|2312954|37|NC_017299|CRISPRCasFinder 2312954-2312990 37 NZ_CP029153 Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence 42640-42676 5 0.865
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NZ_CP011350 Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence 34022-34051 5 0.833
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NZ_CP004877 Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence 373788-373817 5 0.833
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NZ_CP004860 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence 385449-385478 5 0.833
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NZ_CP053953 Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence 257625-257654 5 0.833
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NZ_CP010090 Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence 387720-387749 5 0.833
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NZ_CP053950 Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence 151872-151901 5 0.833
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NZ_CP007616 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence 409186-409215 5 0.833
NC_017299_3 3.4|2310694|34|NC_017299|CRISPRCasFinder 2310694-2310727 34 NC_021292 Vibrio parahaemolyticus strain v110 plasmid, complete sequence 3251-3284 6 0.824
NC_017299_3 3.4|2310694|34|NC_017299|CRISPRCasFinder 2310694-2310727 34 NC_011797 Vibrio fluvialis strain BD146 plasmid pBD146, complete sequence 6811-6844 6 0.824
NC_017299_6 6.2|2319918|28|NC_017299|CRISPRCasFinder 2319918-2319945 28 LC168164 Tenacibaculum phage pT24 DNA, complete genome 36142-36169 6 0.786
NC_017299_6 6.2|2319918|28|NC_017299|CRISPRCasFinder 2319918-2319945 28 NZ_CP013700 Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence 218170-218197 6 0.786
NC_017299_6 6.2|2319918|28|NC_017299|CRISPRCasFinder 2319918-2319945 28 NZ_CP045269 Bacillus megaterium strain FDU301 plasmid pFDU301G, complete sequence 18092-18119 6 0.786
NC_017299_6 6.2|2319918|28|NC_017299|CRISPRCasFinder 2319918-2319945 28 NZ_CP013684 Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence 219024-219051 6 0.786
NC_017299_6 6.2|2319918|28|NC_017299|CRISPRCasFinder 2319918-2319945 28 MN694464 Marine virus AFVG_250M526, complete genome 21991-22018 6 0.786
NC_017299_6 6.2|2319918|28|NC_017299|CRISPRCasFinder 2319918-2319945 28 MN694042 Marine virus AFVG_250M538, complete genome 31267-31294 6 0.786
NC_017299_9 9.1|2446916|30|NC_017299|CRT 2446916-2446945 30 MG264739 UNVERIFIED: Enterococcus phage phiNASRA1, complete genome 23423-23452 6 0.8
NC_017299_9 9.1|2446916|30|NC_017299|CRT 2446916-2446945 30 MG264739 UNVERIFIED: Enterococcus phage phiNASRA1, complete genome 23399-23428 6 0.8
NC_017299_9 9.1|2446916|30|NC_017299|CRT 2446916-2446945 30 MN855763 Myoviridae sp. isolate 210, complete genome 165195-165224 6 0.8
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MG264739 UNVERIFIED: Enterococcus phage phiNASRA1, complete genome 23399-23428 6 0.8
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NC_042040 Rhodococcus phage Trina, complete genome 128989-129018 6 0.8
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MN855763 Myoviridae sp. isolate 210, complete genome 165195-165224 6 0.8
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MT778839 Rhizobium phage P9VFCI, complete genome 101804-101833 6 0.8
NC_017299_6 6.2|2319918|28|NC_017299|CRISPRCasFinder 2319918-2319945 28 NZ_CP041977 Bacillus pacificus strain NCCP 15909 plasmid unnamed2, complete sequence 6280-6307 7 0.75
NC_017299_6 6.2|2319918|28|NC_017299|CRISPRCasFinder 2319918-2319945 28 NC_018499 Bacillus cereus FRI-35 plasmid p03, complete sequence 13127-13154 7 0.75
NC_017299_9 9.1|2446916|30|NC_017299|CRT 2446916-2446945 30 MK605246 Nodularia phage vB_NspS-kac68v162, complete genome 17947-17976 7 0.767
NC_017299_9 9.1|2446916|30|NC_017299|CRT 2446916-2446945 30 MK605244 Nodularia phage vB_NspS-kac65v162, complete genome 16693-16722 7 0.767
NC_017299_9 9.1|2446916|30|NC_017299|CRT 2446916-2446945 30 KU230356 Bacteriophage vB_NpeS-2AV2, complete genome 16530-16559 7 0.767
NC_017299_9 9.1|2446916|30|NC_017299|CRT 2446916-2446945 30 MK605242 Nodularia phage vB_NspS-kac65v151, complete genome 16694-16723 7 0.767
NC_017299_9 9.1|2446916|30|NC_017299|CRT 2446916-2446945 30 NC_048757 Nodularia phage vB_NspS-kac68v161, complete genome 17848-17877 7 0.767
NC_017299_9 9.1|2446916|30|NC_017299|CRT 2446916-2446945 30 MK605243 Nodularia phage vB_NspS-kac65v161, complete genome 16694-16723 7 0.767
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NZ_KY303941 Enterococcus faecalis strain 3 plasmid pGTC3, complete sequence 22282-22311 7 0.767
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NZ_AP018540 Enterococcus faecalis strain KUB3006 plasmid pKUB3006-2, complete sequence 24475-24504 7 0.767
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MT074461 Salmonella phage smaug, complete genome 104173-104202 7 0.767
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MT074447 Salmonella phage phagemcphageface, complete genome 95963-95992 7 0.767
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NC_010856 Candidatus Phytoplasma australiense plasmid pPASb11, complete sequence 1277-1306 7 0.767
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 CP019598 Staphylococcus cohnii strain SNUDS-2 plasmid pSC-SNUDS-2-1, complete sequence 29193-29222 7 0.767
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MH707430 Bacillus phage BSP7, complete genome 30322-30351 7 0.767
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NC_009130 Staphylococcus sp. 693-2 plasmid pLEW6932, complete sequence 45009-45038 7 0.767
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MT778837 Rhizobium phage AF3, complete genome 83564-83593 7 0.767
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NC_025429 Rhizobium phage vB_RleM_P10VF, complete genome 70566-70595 7 0.767
NC_017299_9 9.1|2446916|30|NC_017299|CRT 2446916-2446945 30 MH884508 Bacillus phage vB_BcoS-136, complete genome 8277-8306 8 0.733
NC_017299_9 9.1|2446916|30|NC_017299|CRT 2446916-2446945 30 KP942676 Pectobacterium carotovorum plasmid Drgb1, complete sequence 100833-100862 8 0.733
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MT119359 Enterococcus phage heks, complete genome 10737-10766 8 0.733
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MK125140 Enterococcus phage Nonaheksakonda, complete genome 6254-6283 8 0.733
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MT774409 CrAssphage cr131_1, complete genome 26293-26322 8 0.733
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MN549360 Rhizobium phage RL38J1, complete genome 18881-18910 8 0.733
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NC_019775 Anabaena cylindrica PCC 7122 plasmid pANACY.06, complete sequence 19857-19886 8 0.733
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MK605246 Nodularia phage vB_NspS-kac68v162, complete genome 95907-95936 8 0.733
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MK605244 Nodularia phage vB_NspS-kac65v162, complete genome 94581-94610 8 0.733
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 KU230356 Bacteriophage vB_NpeS-2AV2, complete genome 91288-91317 8 0.733
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MK605242 Nodularia phage vB_NspS-kac65v151, complete genome 94258-94287 8 0.733
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 NC_048757 Nodularia phage vB_NspS-kac68v161, complete genome 97300-97329 8 0.733
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MK605243 Nodularia phage vB_NspS-kac65v161, complete genome 94292-94321 8 0.733
NC_017299_4 4.1|2312890|34|NC_017299|CRISPRCasFinder 2312890-2312923 34 NZ_CP029455 Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence 437444-437477 9 0.735
NC_017299_4 4.1|2312890|34|NC_017299|CRISPRCasFinder 2312890-2312923 34 NZ_CP016590 Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence 113232-113265 9 0.735
NC_017299_9 9.3|2447000|30|NC_017299|CRT 2447000-2447029 30 MK047642 Phage NG55, complete genome 25164-25193 9 0.7
NC_017299_1 1.1|848655|43|NC_017299|CRISPRCasFinder 848655-848697 43 KM983327 Clostridium phage phiCT453A, complete genome 6301-6343 12 0.721

1. spacer 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

tatattaatattacaaaagaagttagaaaatcatac	CRISPR spacer
tatattaatattacaaaagaagttagaaaatcatac	Protospacer
************************************

2. spacer 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

tatattaatattacaaaagaagttagaaaatcatac	CRISPR spacer
tatattaatattacaaaagaagttagaaaatcatac	Protospacer
************************************

3. spacer 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

tatattaatattacaaaagaagttagaaaatcatac	CRISPR spacer
tatattaatattacaaaagaagttagaaaatcatac	Protospacer
************************************

4. spacer 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

tatattaatattacaaaagaagttagaaaatcatac	CRISPR spacer
tatattaatattacaaaagaagttagaaaatcatac	Protospacer
************************************

5. spacer 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 1, identity: 0.972

tatattaatattacaaaagaagttagaaaatcatac	CRISPR spacer
tatattaatattacaaaagaagttagaaaatcataa	Protospacer
*********************************** 

6. spacer 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 1, identity: 0.972

tatattaatattacaaaagaagttagaaaatcatac	CRISPR spacer
tatattaatattacaaaagaagttagaaaatcataa	Protospacer
*********************************** 

7. spacer 3.1|2310692|36|NC_017299|PILER-CR matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 2, identity: 0.944

gtaggtggaaaaggtgcaaaaggtggagtaaactta	CRISPR spacer
gtaggtggcaaaggtgcaaaaggtggagtaaacttt	Protospacer
******** ************************** 

8. spacer 3.1|2310692|36|NC_017299|PILER-CR matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 2, identity: 0.944

gtaggtggaaaaggtgcaaaaggtggagtaaactta	CRISPR spacer
gtaggtggcaaaggtgcaaaaggtggagtaaacttt	Protospacer
******** ************************** 

9. spacer 3.4|2310694|34|NC_017299|CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 2, identity: 0.941

aggtggaaaaggtgcaaaaggtggagtaaactta	CRISPR spacer
aggtggcaaaggtgcaaaaggtggagtaaacttt	Protospacer
****** ************************** 

10. spacer 3.4|2310694|34|NC_017299|CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 2, identity: 0.941

aggtggaaaaggtgcaaaaggtggagtaaactta	CRISPR spacer
aggtggcaaaggtgcaaaaggtggagtaaacttt	Protospacer
****** ************************** 

11. spacer 6.3|2319975|36|NC_017299|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 2, identity: 0.944

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaagcaggtaagggagataatc	Protospacer
 ********************************** 

12. spacer 6.3|2319975|36|NC_017299|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 2, identity: 0.944

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaagcaggtaagggagacaatg	Protospacer
 ******************************.****

13. spacer 6.6|2319985|36|NC_017299|PILER-CR matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 2, identity: 0.944

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaagcaggtaagggagataatc	Protospacer
 ********************************** 

14. spacer 6.6|2319985|36|NC_017299|PILER-CR matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 2, identity: 0.944

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaagcaggtaagggagacaatg	Protospacer
 ******************************.****

15. spacer 7.3|2333272|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 2, identity: 0.944

atttatagaagatggtacatatacaattatttattg	CRISPR spacer
atttatagaggatggtacatatacaattatctattg	Protospacer
*********.********************.*****

16. spacer 7.3|2333272|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 2, identity: 0.944

atttatagaagatggtacatatacaattatttattg	CRISPR spacer
atttatagaggatggtacatatacaattatctattg	Protospacer
*********.********************.*****

17. spacer 7.3|2333272|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 2, identity: 0.944

atttatagaagatggtacatatacaattatttattg	CRISPR spacer
atttatagaggatggtacatatacaattatctattg	Protospacer
*********.********************.*****

18. spacer 7.3|2333272|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 2, identity: 0.944

atttatagaagatggtacatatacaattatttattg	CRISPR spacer
atttatagaggatggtacatatacaattatctattg	Protospacer
*********.********************.*****

19. spacer 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 2, identity: 0.944

tatattaatattacaaaagaagttagaaaatcatac	CRISPR spacer
tatattaatactacaaaagaagttagaaaataatac	Protospacer
**********.******************** ****

20. spacer 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 2, identity: 0.944

tatattaatattacaaaagaagttagaaaatcatac	CRISPR spacer
tatattaatactacaaaaaaagttagaaaatcatac	Protospacer
**********.*******.*****************

21. spacer 7.8|2333603|36|NC_017299|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 2, identity: 0.944

tatattaatattacaaaagaagttagaaaatcatac	CRISPR spacer
tatattaatactacaaaagaagttagaaaataatac	Protospacer
**********.******************** ****

22. spacer 9.3|2447000|30|NC_017299|CRT matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 2, identity: 0.933

tggtttatcttctggtttatcctctggttt	CRISPR spacer
tggtttttcttctggtttttcctctggttt	Protospacer
****** *********** ***********

23. spacer 6.3|2319975|36|NC_017299|CRISPRCasFinder matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 3, identity: 0.917

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaagcaggtaaggtagataatc	Protospacer
 ************************** ******* 

24. spacer 6.3|2319975|36|NC_017299|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 3, identity: 0.917

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaggcaggtaagggagataata	Protospacer
 ***************.******************.

25. spacer 6.3|2319975|36|NC_017299|CRISPRCasFinder matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 3, identity: 0.917

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaagcaggtaaggtagataatc	Protospacer
 ************************** ******* 

26. spacer 6.3|2319975|36|NC_017299|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 3, identity: 0.917

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaagcaggcaagggagacaatg	Protospacer
 *********************.********.****

27. spacer 6.6|2319985|36|NC_017299|PILER-CR matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 3, identity: 0.917

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaagcaggtaaggtagataatc	Protospacer
 ************************** ******* 

28. spacer 6.6|2319985|36|NC_017299|PILER-CR matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 3, identity: 0.917

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaggcaggtaagggagataata	Protospacer
 ***************.******************.

29. spacer 6.6|2319985|36|NC_017299|PILER-CR matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 3, identity: 0.917

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaagcaggtaaggtagataatc	Protospacer
 ************************** ******* 

30. spacer 6.6|2319985|36|NC_017299|PILER-CR matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 3, identity: 0.917

caggatattcaatagaagcaggtaagggagataatg	CRISPR spacer
aaggatattcaatagaagcaggcaagggagacaatg	Protospacer
 *********************.********.****

31. spacer 6.2|2319918|28|NC_017299|CRISPRCasFinder matches to NZ_CP023496 (Staphylococcus simulans strain FDAARGOS_383 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.857

tattttctattcttaactctttatcttc	CRISPR spacer
tattttcttttcttaactcattatcatt	Protospacer
******** ********** ***** *.

32. spacer 4.2|2312954|37|NC_017299|CRISPRCasFinder matches to NZ_CP020425 (Clostridioides difficile strain FDAARGOS_267 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.865

ctagaactgattttgacaaatatgtagaccatgctat	CRISPR spacer
ctagaactgattttgataaatatatagaccatatgat	Protospacer
****************.******.********.. **

33. spacer 4.2|2312954|37|NC_017299|CRISPRCasFinder matches to FN668942 (Clostridium difficile BI1 plasmid pCDBI1, complete sequence) position: , mismatch: 5, identity: 0.865

ctagaactgattttgacaaatatgtagaccatgctat	CRISPR spacer
ctagaactgattttgataaatatatagaccatatgat	Protospacer
****************.******.********.. **

34. spacer 4.2|2312954|37|NC_017299|CRISPRCasFinder matches to NZ_CP011969 (Clostridioides difficile ATCC 9689 = DSM 1296 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.865

ctagaactgattttgacaaatatgtagaccatgctat	CRISPR spacer
ctagaactgattttgataaatatatagaccatatgat	Protospacer
****************.******.********.. **

35. spacer 4.2|2312954|37|NC_017299|CRISPRCasFinder matches to NZ_CP029156 (Clostridioides difficile strain CD161 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.865

ctagaactgattttgacaaatatgtagaccatgctat	CRISPR spacer
ctagaactgattttgataaatatatagaccatatgat	Protospacer
****************.******.********.. **

36. spacer 4.2|2312954|37|NC_017299|CRISPRCasFinder matches to NZ_CP029153 (Clostridioides difficile strain CDT4 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.865

ctagaactgattttgacaaatatgtagaccatgctat	CRISPR spacer
ctagaactgattttgataaatatatagaccatatgat	Protospacer
****************.******.********.. **

37. spacer 9.3|2447000|30|NC_017299|CRT matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 5, identity: 0.833

tggttta---tcttctggtttatcctctggttt	CRISPR spacer
---tttaggctgttctggtttttcctctggttt	Protospacer
   ****   * ********* ***********

38. spacer 9.3|2447000|30|NC_017299|CRT matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 5, identity: 0.833

tggttta---tcttctggtttatcctctggttt	CRISPR spacer
---tttaggctgttctggtttttcctctggttt	Protospacer
   ****   * ********* ***********

39. spacer 9.3|2447000|30|NC_017299|CRT matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 5, identity: 0.833

tggttta---tcttctggtttatcctctggttt	CRISPR spacer
---tttaggctgttctggtttttcctctggttt	Protospacer
   ****   * ********* ***********

40. spacer 9.3|2447000|30|NC_017299|CRT matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.833

tggttta---tcttctggtttatcctctggttt	CRISPR spacer
---tttaggctgttctggtttttcctctggttt	Protospacer
   ****   * ********* ***********

41. spacer 9.3|2447000|30|NC_017299|CRT matches to NZ_CP010090 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence) position: , mismatch: 5, identity: 0.833

tggttta---tcttctggtttatcctctggttt	CRISPR spacer
---tttaggctgttctggtttttcctctggttt	Protospacer
   ****   * ********* ***********

42. spacer 9.3|2447000|30|NC_017299|CRT matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.833

tggttta---tcttctggtttatcctctggttt	CRISPR spacer
---tttaggctgttctggtttttcctctggttt	Protospacer
   ****   * ********* ***********

43. spacer 9.3|2447000|30|NC_017299|CRT matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 5, identity: 0.833

tggttta---tcttctggtttatcctctggttt	CRISPR spacer
---tttaggctgttctggtttttcctctggttt	Protospacer
   ****   * ********* ***********

44. spacer 3.4|2310694|34|NC_017299|CRISPRCasFinder matches to NC_021292 (Vibrio parahaemolyticus strain v110 plasmid, complete sequence) position: , mismatch: 6, identity: 0.824

aggtggaaaaggtgcaaaaggtgga-gtaaactta	CRISPR spacer
gggtggaaaagtttcaaaaggtggaggtagacct-	Protospacer
.********** * *********** ***.**.* 

45. spacer 3.4|2310694|34|NC_017299|CRISPRCasFinder matches to NC_011797 (Vibrio fluvialis strain BD146 plasmid pBD146, complete sequence) position: , mismatch: 6, identity: 0.824

aggtggaaaaggtgcaaaaggtgga-gtaaactta	CRISPR spacer
gggtggaaaagtttcaaaaggtggaggtagacct-	Protospacer
.********** * *********** ***.**.* 

46. spacer 6.2|2319918|28|NC_017299|CRISPRCasFinder matches to LC168164 (Tenacibaculum phage pT24 DNA, complete genome) position: , mismatch: 6, identity: 0.786

tattttctattcttaactctttatcttc	CRISPR spacer
tattttctattctttattctttattagt	Protospacer
************** *.*******.  .

47. spacer 6.2|2319918|28|NC_017299|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 6, identity: 0.786

tattttctattcttaactctttatcttc	CRISPR spacer
ctttttctattgttaactctttaatatc	Protospacer
. ********* *********** . **

48. spacer 6.2|2319918|28|NC_017299|CRISPRCasFinder matches to NZ_CP045269 (Bacillus megaterium strain FDU301 plasmid pFDU301G, complete sequence) position: , mismatch: 6, identity: 0.786

tattttctattcttaactctttatcttc	CRISPR spacer
gattttctcttcttaactctttggtatc	Protospacer
 ******* *************. . **

49. spacer 6.2|2319918|28|NC_017299|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 6, identity: 0.786

tattttctattcttaactctttatcttc	CRISPR spacer
ctttttctattgttaactctttaatatc	Protospacer
. ********* *********** . **

50. spacer 6.2|2319918|28|NC_017299|CRISPRCasFinder matches to MN694464 (Marine virus AFVG_250M526, complete genome) position: , mismatch: 6, identity: 0.786

tattttctattcttaactctttatcttc	CRISPR spacer
gggtttcgattcttaactctctatctac	Protospacer
 . **** ************.***** *

51. spacer 6.2|2319918|28|NC_017299|CRISPRCasFinder matches to MN694042 (Marine virus AFVG_250M538, complete genome) position: , mismatch: 6, identity: 0.786

tattttctattcttaactctttatcttc	CRISPR spacer
ttctttcttttcttaactctttaactat	Protospacer
* .***** ************** ** .

52. spacer 9.1|2446916|30|NC_017299|CRT matches to MG264739 (UNVERIFIED: Enterococcus phage phiNASRA1, complete genome) position: , mismatch: 6, identity: 0.8

tggtttatcctctggtttatcctctggctt	CRISPR spacer
tggtttctcctctggtttctcctcatcttt	Protospacer
****** *********** *****   .**

53. spacer 9.1|2446916|30|NC_017299|CRT matches to MG264739 (UNVERIFIED: Enterococcus phage phiNASRA1, complete genome) position: , mismatch: 6, identity: 0.8

tggtttatcctctggtttatcctctggctt	CRISPR spacer
aggctcttcctctggtttctcctctggttt	Protospacer
 **.*. *********** ********.**

54. spacer 9.1|2446916|30|NC_017299|CRT matches to MN855763 (Myoviridae sp. isolate 210, complete genome) position: , mismatch: 6, identity: 0.8

tggtttatcctctggtttatcctctggctt	CRISPR spacer
tttcttatcttctggtttatcttctggctc	Protospacer
*  .*****.***********.*******.

55. spacer 9.3|2447000|30|NC_017299|CRT matches to MG264739 (UNVERIFIED: Enterococcus phage phiNASRA1, complete genome) position: , mismatch: 6, identity: 0.8

tggtttatcttctggtttatcctctggttt	CRISPR spacer
aggctcttcctctggtttctcctctggttt	Protospacer
 **.*. **.******** ***********

56. spacer 9.3|2447000|30|NC_017299|CRT matches to NC_042040 (Rhodococcus phage Trina, complete genome) position: , mismatch: 6, identity: 0.8

tggtttatcttctggtttatcctctggttt	CRISPR spacer
ctttctatcttctggtttatcccctggtat	Protospacer
.  *.*****************.***** *

57. spacer 9.3|2447000|30|NC_017299|CRT matches to MN855763 (Myoviridae sp. isolate 210, complete genome) position: , mismatch: 6, identity: 0.8

tggtttatcttctggtttatcctctggttt	CRISPR spacer
tttcttatcttctggtttatcttctggctc	Protospacer
*  .*****************.*****.*.

58. spacer 9.3|2447000|30|NC_017299|CRT matches to MT778839 (Rhizobium phage P9VFCI, complete genome) position: , mismatch: 6, identity: 0.8

--tggtttatcttctggtttatcctctggttt	CRISPR spacer
atcgg--aatcttctggtttatccactggttc	Protospacer
  .**   **************** ******.

59. spacer 6.2|2319918|28|NC_017299|CRISPRCasFinder matches to NZ_CP041977 (Bacillus pacificus strain NCCP 15909 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.75

tattttctattcttaactctttatcttc	CRISPR spacer
gattttctatttttaactttttatacaa	Protospacer
 **********.******.***** .  

60. spacer 6.2|2319918|28|NC_017299|CRISPRCasFinder matches to NC_018499 (Bacillus cereus FRI-35 plasmid p03, complete sequence) position: , mismatch: 7, identity: 0.75

tattttctattcttaactctttatcttc	CRISPR spacer
gattttctatttttaactttttatacaa	Protospacer
 **********.******.***** .  

61. spacer 9.1|2446916|30|NC_017299|CRT matches to MK605246 (Nodularia phage vB_NspS-kac68v162, complete genome) position: , mismatch: 7, identity: 0.767

tggtttatcctctggtttatcctctggctt	CRISPR spacer
cagtttatcctctagtttatccttttcttt	Protospacer
..***********.*********.*  .**

62. spacer 9.1|2446916|30|NC_017299|CRT matches to MK605244 (Nodularia phage vB_NspS-kac65v162, complete genome) position: , mismatch: 7, identity: 0.767

tggtttatcctctggtttatcctctggctt	CRISPR spacer
cagtttatcctctagtttatccttttcttt	Protospacer
..***********.*********.*  .**

63. spacer 9.1|2446916|30|NC_017299|CRT matches to KU230356 (Bacteriophage vB_NpeS-2AV2, complete genome) position: , mismatch: 7, identity: 0.767

tggtttatcctctggtttatcctctggctt	CRISPR spacer
cagtttatcctctagtttatccttttcttt	Protospacer
..***********.*********.*  .**

64. spacer 9.1|2446916|30|NC_017299|CRT matches to MK605242 (Nodularia phage vB_NspS-kac65v151, complete genome) position: , mismatch: 7, identity: 0.767

tggtttatcctctggtttatcctctggctt	CRISPR spacer
cagtttatcctctagtttatccttttcttt	Protospacer
..***********.*********.*  .**

65. spacer 9.1|2446916|30|NC_017299|CRT matches to NC_048757 (Nodularia phage vB_NspS-kac68v161, complete genome) position: , mismatch: 7, identity: 0.767

tggtttatcctctggtttatcctctggctt	CRISPR spacer
cagtttatcctctagtttatccttttcttt	Protospacer
..***********.*********.*  .**

66. spacer 9.1|2446916|30|NC_017299|CRT matches to MK605243 (Nodularia phage vB_NspS-kac65v161, complete genome) position: , mismatch: 7, identity: 0.767

tggtttatcctctggtttatcctctggctt	CRISPR spacer
cagtttatcctctagtttatccttttcttt	Protospacer
..***********.*********.*  .**

67. spacer 9.3|2447000|30|NC_017299|CRT matches to NZ_KY303941 (Enterococcus faecalis strain 3 plasmid pGTC3, complete sequence) position: , mismatch: 7, identity: 0.767

tggtt--tatcttctggtttatcctctggttt	CRISPR spacer
--attagaatcttctggttcatcctctggtgg	Protospacer
  .**   ***********.**********  

68. spacer 9.3|2447000|30|NC_017299|CRT matches to NZ_AP018540 (Enterococcus faecalis strain KUB3006 plasmid pKUB3006-2, complete sequence) position: , mismatch: 7, identity: 0.767

tggtt--tatcttctggtttatcctctggttt	CRISPR spacer
--attagaatcttcttgtttatcctctggtgg	Protospacer
  .**   ******* **************  

69. spacer 9.3|2447000|30|NC_017299|CRT matches to MT074461 (Salmonella phage smaug, complete genome) position: , mismatch: 7, identity: 0.767

tggtttatcttctggtttatcctctggttt	CRISPR spacer
tgcttaatcttctggtttatcctccaggaa	Protospacer
** ** ******************..*   

70. spacer 9.3|2447000|30|NC_017299|CRT matches to MT074447 (Salmonella phage phagemcphageface, complete genome) position: , mismatch: 7, identity: 0.767

tggtttatcttctggtttatcctctggttt	CRISPR spacer
tgcttaatcttctggtttatcctccaggaa	Protospacer
** ** ******************..*   

71. spacer 9.3|2447000|30|NC_017299|CRT matches to NC_010856 (Candidatus Phytoplasma australiense plasmid pPASb11, complete sequence) position: , mismatch: 7, identity: 0.767

tggtttatcttctggtttatcctctggttt	CRISPR spacer
ttgtttatcttctgttttatcttcttttgg	Protospacer
* ************ ******.***  *  

72. spacer 9.3|2447000|30|NC_017299|CRT matches to CP019598 (Staphylococcus cohnii strain SNUDS-2 plasmid pSC-SNUDS-2-1, complete sequence) position: , mismatch: 7, identity: 0.767

tggtttatcttctggtttatcctctggttt---	CRISPR spacer
gggtttatcttctggtttaccc---aattttaa	Protospacer
 ******************.**   ..***   

73. spacer 9.3|2447000|30|NC_017299|CRT matches to MH707430 (Bacillus phage BSP7, complete genome) position: , mismatch: 7, identity: 0.767

tggtttatcttctggtttatcctctggttt	CRISPR spacer
agctgcttcttcttgtttagcctctggttt	Protospacer
 * * . ****** ***** **********

74. spacer 9.3|2447000|30|NC_017299|CRT matches to NC_009130 (Staphylococcus sp. 693-2 plasmid pLEW6932, complete sequence) position: , mismatch: 7, identity: 0.767

tggtttatcttctggtttatcctctggttt---	CRISPR spacer
gggtttatcttctggtttaccc---aattttaa	Protospacer
 ******************.**   ..***   

75. spacer 9.3|2447000|30|NC_017299|CRT matches to MT778837 (Rhizobium phage AF3, complete genome) position: , mismatch: 7, identity: 0.767

--tggtttatcttctggtttatcctctggttt	CRISPR spacer
atcgg--aatcttctggttcatccactggttc	Protospacer
  .**   ***********.**** ******.

76. spacer 9.3|2447000|30|NC_017299|CRT matches to NC_025429 (Rhizobium phage vB_RleM_P10VF, complete genome) position: , mismatch: 7, identity: 0.767

--tggtttatcttctggtttatcctctggttt	CRISPR spacer
atcgg--aatcttctggttcatccactggttc	Protospacer
  .**   ***********.**** ******.

77. spacer 9.1|2446916|30|NC_017299|CRT matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 8, identity: 0.733

tggtttatcctctggtttatcctctggctt	CRISPR spacer
ctatttatcctctggtttatactctaattc	Protospacer
. .***************** ****...*.

78. spacer 9.1|2446916|30|NC_017299|CRT matches to KP942676 (Pectobacterium carotovorum plasmid Drgb1, complete sequence) position: , mismatch: 8, identity: 0.733

tggtttatcctctggtttatcctctggctt	CRISPR spacer
cattcactactctggtttatcttctggctt	Protospacer
.. *.  * ************.********

79. spacer 9.3|2447000|30|NC_017299|CRT matches to MT119359 (Enterococcus phage heks, complete genome) position: , mismatch: 8, identity: 0.733

tggtttatcttctggtttatcctctggttt	CRISPR spacer
ctctccatcttttggtttatcctctgtttg	Protospacer
.  *..*****.************** ** 

80. spacer 9.3|2447000|30|NC_017299|CRT matches to MK125140 (Enterococcus phage Nonaheksakonda, complete genome) position: , mismatch: 8, identity: 0.733

tggtttatcttctggtttatcctctggttt	CRISPR spacer
ctctccatcttttggtttatcctctgtttg	Protospacer
.  *..*****.************** ** 

81. spacer 9.3|2447000|30|NC_017299|CRT matches to MT774409 (CrAssphage cr131_1, complete genome) position: , mismatch: 8, identity: 0.733

tggtttatcttctggtttatcctctggttt	CRISPR spacer
aggtttatctgctggtttatcatcatcctc	Protospacer
 ********* ********** **   .*.

82. spacer 9.3|2447000|30|NC_017299|CRT matches to MN549360 (Rhizobium phage RL38J1, complete genome) position: , mismatch: 8, identity: 0.733

tggtttatcttctggtttatcctctggttt	CRISPR spacer
atcgtgatcttctggttcatccactggttc	Protospacer
    * ***********.**** ******.

83. spacer 9.3|2447000|30|NC_017299|CRT matches to NC_019775 (Anabaena cylindrica PCC 7122 plasmid pANACY.06, complete sequence) position: , mismatch: 8, identity: 0.733

tggtttatcttctggtttatcctctggttt	CRISPR spacer
cttatcatcttctggtttatcgtctgggta	Protospacer
.   *.*************** ***** * 

84. spacer 9.3|2447000|30|NC_017299|CRT matches to MK605246 (Nodularia phage vB_NspS-kac68v162, complete genome) position: , mismatch: 8, identity: 0.733

tggtttatcttctggtttatcctctggttt	CRISPR spacer
ctcctcttcttcagttttatcctctggttt	Protospacer
.  .*. ***** * ***************

85. spacer 9.3|2447000|30|NC_017299|CRT matches to MK605244 (Nodularia phage vB_NspS-kac65v162, complete genome) position: , mismatch: 8, identity: 0.733

tggtttatcttctggtttatcctctggttt	CRISPR spacer
ctcctcttcttcagttttatcctctggttt	Protospacer
.  .*. ***** * ***************

86. spacer 9.3|2447000|30|NC_017299|CRT matches to KU230356 (Bacteriophage vB_NpeS-2AV2, complete genome) position: , mismatch: 8, identity: 0.733

tggtttatcttctggtttatcctctggttt	CRISPR spacer
ctcctcttcttcagttttatcctctggttt	Protospacer
.  .*. ***** * ***************

87. spacer 9.3|2447000|30|NC_017299|CRT matches to MK605242 (Nodularia phage vB_NspS-kac65v151, complete genome) position: , mismatch: 8, identity: 0.733

tggtttatcttctggtttatcctctggttt	CRISPR spacer
ctcctcttcttcagttttatcctctggttt	Protospacer
.  .*. ***** * ***************

88. spacer 9.3|2447000|30|NC_017299|CRT matches to NC_048757 (Nodularia phage vB_NspS-kac68v161, complete genome) position: , mismatch: 8, identity: 0.733

tggtttatcttctggtttatcctctggttt	CRISPR spacer
ctcctcttcttcagttttatcctctggttt	Protospacer
.  .*. ***** * ***************

89. spacer 9.3|2447000|30|NC_017299|CRT matches to MK605243 (Nodularia phage vB_NspS-kac65v161, complete genome) position: , mismatch: 8, identity: 0.733

tggtttatcttctggtttatcctctggttt	CRISPR spacer
ctcctcttcttcagttttatcctctggttt	Protospacer
.  .*. ***** * ***************

90. spacer 4.1|2312890|34|NC_017299|CRISPRCasFinder matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 9, identity: 0.735

tttatatgaaaggaatagatataagtatgcataa	CRISPR spacer
ttaatataaaaggaatagatataatattttttag	Protospacer
** ****.****************   * . **.

91. spacer 4.1|2312890|34|NC_017299|CRISPRCasFinder matches to NZ_CP016590 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence) position: , mismatch: 9, identity: 0.735

tttatatgaaaggaatagatataagtatgcataa	CRISPR spacer
ttaatataaaaggaatagatataatattttttag	Protospacer
** ****.****************   * . **.

92. spacer 9.3|2447000|30|NC_017299|CRT matches to MK047642 (Phage NG55, complete genome) position: , mismatch: 9, identity: 0.7

tggtttatcttctggtttatcctctggttt	CRISPR spacer
atctttatcttctggttcatcatctgtcgc	Protospacer
   **************.*** **** . .

93. spacer 1.1|848655|43|NC_017299|CRISPRCasFinder matches to KM983327 (Clostridium phage phiCT453A, complete genome) position: , mismatch: 12, identity: 0.721

tttaaattttgaattaaattctgctgtaattttcataattttt	CRISPR spacer
ctcctcactactattaaattctgctgtaattttcatatttatt	Protospacer
.*.    .*   ************************* ** **

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 188147 : 197750 8 Clostridium_phage(33.33%) protease NA
DBSCAN-SWA_2 699366 : 732082 31 Lactococcus_phage(25.0%) protease,transposase,integrase attL 707159:707175|attR 736487:736503
DBSCAN-SWA_3 952809 : 964454 6 Clostridium_botulinum_D_phage(33.33%) NA NA
DBSCAN-SWA_4 1742686 : 1749751 8 uncultured_phage(33.33%) NA NA
DBSCAN-SWA_5 2449379 : 2473869 30 uncultured_Caudovirales_phage(66.67%) tail,plate,terminase,capsid,portal NA
DBSCAN-SWA_6 2478528 : 2494617 27 Clostridium_phage(26.67%) integrase attL 2477081:2477095|attR 2503539:2503553
DBSCAN-SWA_7 2694256 : 2737597 60 Clostridium_phage(60.47%) tail,head,plate,transposase,terminase,capsid,portal NA
DBSCAN-SWA_8 3084153 : 3093732 7 Synechococcus_phage(42.86%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage