CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015717	Hyphomicrobium sp. MC1, complete genome	1 crisprs	cas3,csa3,WYL,DEDDh	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_015717_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015717_1

3892658-3892773

Orphan

Consensus_repeat	Method
GGCTGGAAGCGCGTCACGCCGGGCACGCAGCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_015717_1

>merge|NC_015717|1|3892658-3892773|CRISPRCasFinder
GGCTGGAAGCGCGTCACGCCGGGCACGCAGCCCGCCCCCGTCGTCAATCCAGGCCAGCCGAACAAGCCGCAGAACCAGCAGGGCTGGAAGCGCGTCACTCCGGGCACGCAGCCCGC

>NC_015717|1|1|3892658-3892773|CRISPRCasFinder
GGCTGGAAGCGCGTCACGCCGGGCACGCAGCCCGC	CCCCGTCGTCAATCCAGGCCAGCCGAACAAGCCGCAGAACCAGCAG
GGCTGGAAGCGCGTCACTCCGGGCACGCAGCCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_015717.1\|WP_155831374.1\|3885078_3886917_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|213656
NC_015717.1\|WP_013949640.1\|3887438_3888167_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341362
NC_015717.1\|WP_013949643.1\|3889754_3890516_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181020
NC_015717.1\|WP_013949651.1\|3899286_3900738_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182502
NC_015717.1\|WP_013949649.1\|3897645_3898188_+\|S-adenosylmethionine-decarboxylase	unknown	unknown	gnl\|CDD\|376892
NC_015717.1\|WP_013949647.1\|3894026_3894746_-\|thermonuclease-family-protein	unknown	unknown	gnl\|CDD\|224442
NC_015717.1\|WP_013949657.1\|3906663_3907224_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|367391
NC_015717.1\|WP_024276455.1\|3888263_3889247_+\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176258
NC_015717.1\|WP_013949650.1\|3898515_3899265_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_015717.1\|WP_013949648.1\|3895048_3897385_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957
NC_015717.1\|WP_013949637.1\|3882163_3884899_-\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223972
NC_015717.1\|WP_013949654.1\|3903256_3904273_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NC_015717.1\|WP_013949636.1\|3881777_3882167_+\|host-attachment-protein	unknown	unknown	gnl\|CDD\|376275
NC_015717.1\|WP_013949655.1\|3904328_3905879_-\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455
NC_015717.1\|WP_013949645.1\|3890932_3891520_-\|HdeD-family-acid-resistance-protein	unknown	unknown	gnl\|CDD\|225786
NC_015717.1\|WP_013949642.1\|3889250_3889739_-\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236180
NC_015717.1\|WP_013949656.1\|3906034_3906667_+\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NC_015717.1\|WP_013949639.1\|3887013_3887427_+\|hypothetical-protein	unknown	unknown	unknown
NC_015717.1\|WP_013949644.1\|3890529_3890769_-\|biotin-attachment-protein	unknown	unknown	gnl\|CDD\|133458
NC_015717.1\|WP_013949652.1\|3901024_3902968_+\|acyl-CoA:acetate/3-ketoacid-CoA-transferase	unknown	unknown	gnl\|CDD\|227016

Protein	Function_ID	Function_description	E-value
NC_015717.1\|WP_155831374.1\|3885078_3886917_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NC_015717.1\|WP_013949640.1\|3887438_3888167_+\|CBS-domain-containing-protein	gnl\|CDD\|341362	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.99646e-58
NC_015717.1\|WP_013949643.1\|3889754_3890516_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181020	PRK07533, PRK07533, enoyl-[acyl-carrier-protein] reductase FabI.	0
NC_015717.1\|WP_013949651.1\|3899286_3900738_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|182502	PRK10504, PRK10504, putative transporter; Provisional.	4.72824e-97
NC_015717.1\|WP_013949649.1\|3897645_3898188_+\|S-adenosylmethionine-decarboxylase	gnl\|CDD\|376892	pfam02675, AdoMet_dc, S-adenosylmethionine decarboxylase. This family contains several S-adenosylmethionine decarboxylase proteins from bacterial and archaebacterial species. S-adenosylmethionine decarboxylase (AdoMetDC), a key enzyme in the biosynthesis of spermidine and spermine, is first synthesized as a proenzyme, which is cleaved post translationally to form alpha and beta subunits. The alpha subunit contains a covalently bound pyruvoyl group derived from serine that is essential for activity.	1.26431e-15
NC_015717.1\|WP_013949647.1\|3894026_3894746_-\|thermonuclease-family-protein	gnl\|CDD\|224442	COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair].	1.43784e-26
NC_015717.1\|WP_013949657.1\|3906663_3907224_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|367391	pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.	6.99037e-60
NC_015717.1\|WP_024276455.1\|3888263_3889247_+\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176258	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NC_015717.1\|WP_013949650.1\|3898515_3899265_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.54578e-06
NC_015717.1\|WP_013949648.1\|3895048_3897385_+\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	1.87064e-29
NC_015717.1\|WP_013949637.1\|3882163_3884899_-\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	3.32337e-178
NC_015717.1\|WP_013949654.1\|3903256_3904273_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.7091e-87
NC_015717.1\|WP_013949636.1\|3881777_3882167_+\|host-attachment-protein	gnl\|CDD\|376275	pfam18856, baeRF_family12, Bacterial archaeo-eukaryotic release factor family 12. Bacterial family of the archaeo-eukaryotic release factor superfamily. Likely to play roles in biological conflicts or regulation under stress conditions at the ribosome.	2.90991e-20
NC_015717.1\|WP_013949655.1\|3904328_3905879_-\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	7.19598e-151
NC_015717.1\|WP_013949645.1\|3890932_3891520_-\|HdeD-family-acid-resistance-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	3.82732e-21
NC_015717.1\|WP_013949642.1\|3889250_3889739_-\|MaoC-family-dehydratase-N-terminal-domain-containing-protein	gnl\|CDD\|236180	PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated.	1.70369e-94
NC_015717.1\|WP_013949656.1\|3906034_3906667_+\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	3.5169e-59
NC_015717.1\|WP_013949644.1\|3890529_3890769_-\|biotin-attachment-protein	gnl\|CDD\|133458	cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.	4.4386e-12
NC_015717.1\|WP_013949652.1\|3901024_3902968_+\|acyl-CoA:acetate/3-ketoacid-CoA-transferase	gnl\|CDD\|227016	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism].	0

>NC_015717.1|WP_013949645.1|3890932_3891520_-|HdeD-family-acid-resistance-protein
MSFDPSDVRRMRQALVTSLHENWKMFLIEGIVLVVLGTAAIIVPPIATLTVTFFIGWLLLFSGIAGLFTTFSMRPMPGFWWSLLSAIIGIGAGLVLLFSPATGAVSLTIVLVAFFILEGIASVMFALEHRNELPGAWVMMLLSGIVDLVLGAMIFFGLPSSAAWAIGLLVGINMIFGGFALIAMALQARKIEPVA
>NC_015717.1|WP_013949644.1|3890529_3890769_-|biotin-attachment-protein
MSDIKIDEALWASSIFPEGTLVRWLVPDGASVAAGHGIAVVRIEDALHEITAPSDGRITIVAGENSVVDPGALIATLSE
>NC_015717.1|WP_013949643.1|3889754_3890516_-|enoyl-ACP-reductase-FabI
MSLAGKKGLVVGIANEHSIAYGCAKAFRNAGADLAITYLNAKAEPYVRPLAEELKSPIIVPCDVREPGQLEAVFERIEKEWGKLDFLLHSIAFAPKDDLHSRVVDCSQAGFSLAMDVSCHSFIRMAHLAEPLMKDGGCLLTVTFYGSEKVVEEYNLMGPVKAALESSVRYMAAELGKKNIRVHALSPGPLKTRAASGIDRFDELLDRTRERMPDHQLVSIDDVGNVAAFLADDNAKALTGNLEYIDGGYHILG
>NC_015717.1|WP_013949642.1|3889250_3889739_-|MaoC-family-dehydratase-N-terminal-domain-containing-protein
METLTNRTFDELKVGDSASLVRTLTHRDIELFAAVSGDFNPAHVDPEFAKTDIFHGVVVHGMLGAALISTVLGTKLPGPGTIYLDQTLQFRHPVRVGDTLTVTLTVSEKMPKNHRVNLDCKAVNQKGEEVITGVATVMAPTEKISRPRVALPQVEVRDGPAQ
>NC_015717.1|WP_024276455.1|3888263_3889247_+|zinc-dependent-alcohol-dehydrogenase-family-protein
MKAMVFRAVGEPLTLEERPDPQPGKGEIRVRVEACAVCRTDLHVIDGDLPDPKHPVIPGHEIVGIVDALGADVHDHKIGERVGVPWLGHTCGHCPYCLAERENLCDFPLFTGYTRDGGFATHVIADADFAFAMPGFSDPVAAAPLMCAGLIGWRSLRMAGDGKRIGLYGFGAAAHIIAQVIIWQGREVYAFTRAGDNQAQDFARSLGAVWAGSSDDVPPNELDAAIIFAPVGSLVPAALKAVRKGGRVVCGGIHMSDIPQFPYDILWEEREIRSVANLTRQDAHEFLDIAPKAGVHTTTTVYPLAHANEALADLRAGRFSGAAVLVP
>NC_015717.1|WP_013949640.1|3887438_3888167_+|CBS-domain-containing-protein
MKASDVMTTKVISIRPDATLSEMIKKMLDHRISGLPVVSEDGKLVGVVTEGDCLRRAETGTEVKRSFWRDMLTGSETLANEYIRTHGRKVSEVMTRDPISVSPDTELSEVIHVMEKNRIKRVPVVKDGAVVGILSRANLLQTLSGLVRNTDVDDTDADIRKGVIAALGTLPWAANEFLNVTVKDGVVDLWGCYTAYRQDEAAVVATENVPGVKQVRNHLSWVDPMSGTVVYSPDEKVPLADA
>NC_015717.1|WP_013949639.1|3887013_3887427_+|hypothetical-protein
MLDRPARNDMSTQVPAPGIAPMLNAFNPMTAYMAFWGGPALQLGGQVAQSWLHFLGSRWMKDMRFPQQIAGCKTADDVVTAVAEFWQQASKDYSSEINQLANLTWTATRTAFDGAGTFTSKDCSCSGKCASHPAGTA
>NC_015717.1|WP_155831374.1|3885078_3886917_+|alpha/beta-fold-hydrolase
MLTNVQNALPPPHSNVTALLTDQSGTRSETAKFTPASLPTPEQPELDRYVHYLIARMTGGLSPAACANAFFDWGSHMAASPGLQLELMGEGVRQWMRLLAFTQQAMGSNAALPPSVEPQPHDHRFISDGWKQYPFNVFAEAFLLGEEWWHSATTRVRGAEKQSLNRVDFITRQMLDVFAPANFVATNPDVLSRTQSEAGLNLLRGYSNYLDDVKRLRSREAPPGAEKFKVGETVAVTPGKVVYRNHLIELIQYEPTTETVHSEPILIVPAWIMKYYILDLRPENSLVKYLTAQGFSVFIISWRNPDAGDRNLGFDDYRRLGVMAAIDAITRIVGDRKIHATGYCLGGTLLSVAASAMANENDDRLATLTLLAAQADFREAGELTLFIDESQITLLEDMMAEQGFLDSAQMAGAFQLLRSNDLIWSHVVNDYLLGERQPVFDLLAWNSDATRMPYRMHSEYLRSLFLNNDFAEGRFKVDGRSVALTDLRVPIFAIGTETDHVAPWRSVYKFNILSDTSVTFLLTSGGHNAGIVSPPGTPHRSYRMATKLANDKFVDPDTWFATTPKTEGSWWTAWAEWLARMSTGIVDPPSMGAPENGLKPLCPAPGTYVLQR
>NC_015717.1|WP_013949637.1|3882163_3884899_-|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase
MTVRNLNYLCAPHSVALIGASKRPGSVGATVLKNLLEGGFKGPISLVNPKYRDIDGRRCYSTVADLPEAPDLAVLATPPGTITGLIEELSAKGTRAAIALAAGMGEQKKAMIAAAQPNCLRILGPNCIGLMIPPIGLNASFAHRAPLAGDLAFVSQSGALVTAVIDWAAGRGIGFSHVVSLGEMADIDLGDMLDYLATDANTRAILLYVEAVTHAPKFISAARRAARMKPVVVVKTGRHAGGAHAALSHTGALAGSDAAYNAAFRRSGILRVLTLDDLFAAAETLSRVSRLGGERLAILTNGGGAGVLATDELQDWKGTLATLSPDTIEALNRILPPTWSHGNPVDIIGDAGTKRYADALEALLREQDSDAILVLHCPSATISATDAGQAVVDTVAANPKLVADKPVMTCWLGDGAVRAARALFEAHDIPTFDSTSAAITGFMQLVDHARSQAELMRTPQIAAGDHKYDSRSAGREIRKILESGRTVASALETKTILAAYGIPTDKAVLAPDPAAVRSVAAGILKNNDACVIKIASPDISHKSDVGGVHLNLESDAAAEQAAVDMLAKIKAKLPKARIDGFTVEPMVKRPNALETIVGMSVDQTFGPMLLFGAGGVAVEVLRDSAMALPPLDMHLARQMICETRISRLLKGYRDHAPADMDAIADTLVRISDLIVDHPEIRELDINPLLVDKDGVIAIDARMKLANEDANPRLPLAIRPYPAHLEREISINPVGKVLIRPVRPEDEPAFAKFFSQISEEDVRLRFFTGRKTFPHPFLATLTQIDYAREMAFVAIDAKTNEMIGGSRLVLEPDQTRGEFGILVRSDLHGHGLGWQLMSALLSYAQYEGVEQIYGLVNVANTHMLDMARDLGFETRPYEGDSSIREVVWHPAASAVKAPAVGAAQMTPEKTLS
>NC_015717.1|WP_013949636.1|3881777_3882167_+|host-attachment-protein
MKRTWILIADSSGARILEALGNSRGFFEHAVGDGRYPYRSDSAPQEERPRVTKALDGLFASQLSTMLANRLKSRSFDRLVLVAPTVMLGKLRKMISPAVRETVIAEIEMDLTDVPTSEIAQHLADVTLF
>NC_015717.1|WP_013949647.1|3894026_3894746_-|thermonuclease-family-protein
MFINPPIRPPSRTSVGVATLVIALFPLVVHALPGDDGQPAIISGIGHVVDGDTLDVGATRIRLEGIDAPEIAQTCQTASGETWNCGVAAAAMLRKLAEHRELMCERKGTDRYRRVLATCFADGVDIDEAMVRVGLAWAFVRYSKRYVAVETEARSARVGVWQGAAEAPWDFRHNEWKVAETSAPKGCAIKGNVSSRGRIFHMPWDPWYDRVKMEPGKGKRWFCSEQEAIEAGWRPASAN
>NC_015717.1|WP_013949648.1|3895048_3897385_+|AsmA-family-protein
MTSQYPQPPAPPPLPPFAAQRPAFERAPLGSGPRRGPPPPGSPRKPPPRRRSGLLVGVVYFLLVVLFVGGAGVGYLVLNPPSDFIRQKITEQVKARTGRDLVIAGPATFAFFPELGVSLHDVSLSAPAGMDGTLLHAEALQVSVEPISLLQQRPKINAVTLRQPVFDFHVDKNGRNNWKFATNRAATQVAELQRAGTLRDASAFDVAAAEVDGNSVAIPSVSNVQLDNVRIEDGTIRFSDDRTGRKSQVSGINVKLGLPSLESPLVANGNLVWRDQRLDFDGKIENVRGLLMNAPAHLTFSTKNGLINASYSGDLTVQDGAILDGQVSAKADSARQLAEWFGSRLPPVTGFGPLSIEGKLQTADNVTEFSNATFALDGETAKGTIKVTTGGVRPFVEANLAISALDLNKYLTNAVVGTLVTESANAPADPAPAAAPAAGPDEIQKLLQKQGTKVYGVEQRAGWSSERLNLTLLGLADGKAQLAIGRLHFKNVSIGQSSVDVTVNNRAMQASFNDVALYEGHGRGVLTLDGSADTANIGANFNFDSVSALPFLKDAANFGWVSGNANVKLQLAANGASQLQLIESLNGNAGFQFSNGAIVGFNLPGALRGLSQGNFGALRTSPTEKTDFSALAATFTVTNGVAQNQDLQLVSPLLRATGSGVIHMPQRTVDYTVKPKLIASLEGQGGNAQASGIEVPVRITGSWDHPSYHPDLNGVLADPNKTMDAIKNIGKKLKGKNSDEIVDSLFGKKGDEDPQTEKTKKKAKKLLNQLFGKADDQN
>NC_015717.1|WP_013949649.1|3897645_3898188_+|S-adenosylmethionine-decarboxylase
MAFNDTLFQLGMDLTRSSTAQEEDHARAEFNAEVEDSIVSPIAEQSVPSAGTTIFIDLHGAMRLGDVKSAERAMKRAVENLGLKLKSLHLDRAAGGDVSGVAVLSSGHLSLQACSRTGFAAVDARGCDGLTPSKALLALAGAFGAREAVIQRKRTASVVEMPTVRAVRPAQRQKAQAKAA
>NC_015717.1|WP_013949650.1|3898515_3899265_+|class-I-SAM-dependent-methyltransferase
MEILYSPKFYANQQAGSLSSAEVVIPIVLSLFKVNSAVDIGCGVGGWLKTLSQHGVSDYQGLDGDYVSAEMLQIPAEHFTPTDLSRSFSLSRKYDLAISLEVAEHLPESSADEFVESIVNAAPVVLFSAAIPLQGGLNHINEQWQSYWASKFATHGYVAIDCIRPAIFRDPRVASWYRQNILIFCEPAKVPSSLSPVTSPYQLDRVDHGLLAYFQGGSSQPGSGREALQSIKQAVPVLINAALKKVRLA
>NC_015717.1|WP_013949651.1|3899286_3900738_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MTELFRRNFIPLVVATGLFMENLDATVLATSLPAIAKDLHSNPIHLKLAVTTYLLALAVFIPASGWMADRFGAKNVFRAAMVVFSVGSIACGLSSDLGSLVVARVVQGIGGAMMAPVGRLIVLRTIPKTDMINAIAWLTVPALVGPVLGPPLGGFLTTYFSWRWIFWINIPVALVGIVLVTRLIPDTRESTPSTFDMRGFFLIGPGLSLFLTGVTLMGLGLLDRDLVVLITLSGAVLLGLYVWHAFRVPQPIIDLRLLAIPTYRAGVVGGFLFRTGLGAGPFLLPLLFQTGFGMTAFQSGLMTFATGIGAMFMKTQAAAIIRRYGFKRVLIANAVVSSLFAALPSLFVSSTPALLIVGLFLAGGLSRSLQFTSVNTLAYADVPPERLSRATSFAAALQELSGSVGVTIAAMGLQAMQYLRGGSAIDAAHFPPVFLLIGLVSMSSILFFSRLSRGAGASLLPTEALKAAEPAKEVARQREGHMT
>NC_015717.1|WP_013949652.1|3901024_3902968_+|acyl-CoA:acetate/3-ketoacid-CoA-transferase
MVTNKVMSADEAIARIGDNAVVTTTGFVQSCIPEALHAALEKRFVETGAPRDLTLIMCAGAGDSKGLGTGRLHHDGLLKRVIAANFGRMPKVAQAAQDDKIQGYNLPQGVISKLYRSCASGSPGLFTRVGLHTYVDPRLGGGKVNTKTKEDLVKLVEVDGKEWLFYKATPINVALIRATSADPLGNLSMEREALTLDVLAQAMAAHNNGGIVIAQVERIVAEGSIKPKDVKVPGILVDCVVIADPPEMHRMNYGVIYDPGLAGEVRVTVDSLPTMELDERKIIARRASFELPPNGVINLGVGAPDGVANVANEEKVTPYLVMTTEAGAVGGVLAGGSSFGSSANAHSILDQNQMFDFYHGGGLDLTCLGMAECDSIGNVNTSKFGGKLNGCGGFIDISQNARAVVFAGTFTAGGLKVAIEDGKVRILQEGRAKKFVKQVEQVTFSGKYAAQKGQPVIYVTERCVFQLTEHGLELIEVAPGIDIERDILPNMAFKPHIHKPVTMNPRIFLDQPMDLLADLLNQHLKDRISYDAGRNILNIDLRAWSVRKKADVADLKKAIVEACQATGKRVDAMINQDGCRIAEDLYDDYADMVAYVTKNHYARSARYATSAVTRQKLQDALRRRGLNTHVFENADAAFESLERQAAE
>NC_015717.1|WP_013949654.1|3903256_3904273_+|trypsin-like-peptidase-domain-containing-protein
MEHTIFRVFDDSGVERQPAQAESVARDDTALMDAYSNAVVDVVDAVSPAVVHVQVKSTRGGRSGQGSGSGVIVSPDGLILTNNHVIDGAQSITLAQGDGQHFGARLVGRDPDTDIAVLRAETTERLKFAKLADSKKLRPGQIAIAIGNPLGFQSTVTAGIISAVGRSLRAENGRLIDDVIQTDAALNPGNSGGPLVNSSGHVIGINTATIMGAQGLCFAVASNTAEYVLTQILSHGRVRRGVMGIVAEHVVLPQRIRHALHLTQAGAIGIRSVQANGPADAAGLKAGDIMIALDGVAIAGVDDVSRVLDAKHINQKVIATVLRSGEKLEYAIVPEERD
>NC_015717.1|WP_013949655.1|3904328_3905879_-|P-loop-NTPase
MPVDKTQVLNALRRVKGPDLESNIVDLGLVSEIFIKDDHPYFSITIPASRAEELEQLRLAAEKVVSEIGGVSGVTAVLTADAPAGQSRDTRVAGGPVKAVSGPRPEHPRVQAAREKGATGDGAGPRQAAAAAQPAAKAQAIPGVKHVIAVASGKGGVGKSTVAVNLALGLQAIGLKVGIVDADIYGPSQPRLLGITGKPKVANGKTITPLEGWGLKVMSMGFLVDEGTPVVWRGPMVVSALSQMLRETDWAGTTGDLDVLIIDMPPGTGDVQLTISQSVPLSGAVVVSTPQDLALIDARKGIAMFKRVEVPILGIVENMSYFLCPKCGERSDVFGHGGAHDEAKKLGVPFLGEVPLHMEIRETSDSGKPVTVAAPESQYAAIFRDIAARTWSEVERAKGTLTPPPVLEIIDGGKVLKAAFPDGRTFELPAEFLRVVSPSAEVQGHSPSQRITVPRKKNVKLTGMNAVGNYATRLAFDDGHNTGLYTWGYLHLIGREKDQRWGQYLEELSAKGLTRE
>NC_015717.1|WP_013949656.1|3906034_3906667_+|molybdenum-cofactor-guanylyltransferase-MobA
MVASDHILGVILAGGRSRRFGGGDKTLAEIDGKSILARVISRFRPQVGRLVLSINGDAQRFANFGIETITDGESPELGPLSGILAAMDWAKAHAPGVTLIATVSSDVPFLPDDLITRLDAARDEDQSVAIAESAGRRHPTVGLWPLKRRSDVANALARRALSVNRLAADLDAVAVIFPMRDSDGDEIDPFFNVNTRDDLDAARVLAQKKG
>NC_015717.1|WP_013949657.1|3906663_3907224_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MTVLGKAFLSHATLPLFGIAGWSNSGKTTLIEKLATHFSGEGLRVATIKHTHHKFDIDAPGSDTERHRSAGAAETAIVSGSRVAFIEEIDRAGEPTLEEIAARLRPADIILVEGYKSAHIPKIEVRRAAVAAEKLLSTTDPLVVAIAADHEVDAHGKPVFDLNDIDNIAALIVRTVGPFNPVRQLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1868592 : 1876445

Pneumococcus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013947584.1\|1868592_1869054_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	3.9e-26	50.4
WP_013947585.1\|1869060_1869447_-	6-carboxytetrahydropterin synthase	NA	NA	NA	NA
WP_013947586.1\|1869533_1870166_-	7-carboxy-7-deazaguanine synthase	A5A3S6	Burkholderia_phage	6.9e-13	34.3
WP_013947587.1\|1870230_1870938_+	queuosine precursor transporter	A0A2H4J2N7	uncultured_Caudovirales_phage	1.5e-13	32.0
WP_029670963.1\|1870965_1871439_+	PaaI family thioesterase	NA	NA	NA	NA
WP_013947589.1\|1871619_1871865_-	hypothetical protein	NA	NA	NA	NA
WP_013947590.1\|1871843_1872551_-	7-cyano-7-deazaguanine synthase QueC	A0A2I2L6M4	Escherichia_phage	3.0e-49	45.9
WP_013947591.1\|1872560_1872920_-	GFA family protein	NA	NA	NA	NA
WP_013947592.1\|1873074_1874361_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	4.0e-145	62.8
WP_013947593.1\|1874514_1874829_+	hypothetical protein	NA	NA	NA	NA
WP_013947594.1\|1874937_1875432_+	hypothetical protein	NA	NA	NA	NA
WP_013947595.1\|1875452_1876445_+	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	3.3e-46	39.9

DBSCAN-SWA_2

1990688 : 2049303

Azospirillum_phage(13.33%)

tail,protease,portal,capsid,head,integrase,terminase

attL 2012224:2012241|attR 2037449:2037466

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013947728.1\|1990688_1991411_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_013947729.1\|1991653_1992295_+	PAS domain-containing protein	NA	NA	NA	NA
WP_013947730.1\|1992466_1993096_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_013947731.1\|1993255_1993936_+	transglutaminase-like cysteine peptidase	NA	NA	NA	NA
WP_013947732.1\|1994072_1994603_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_013947733.1\|1994617_1994833_-	DUF3126 family protein	NA	NA	NA	NA
WP_013947734.1\|1994857_1995685_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_013947735.1\|1995886_1996690_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_024275882.1\|1996698_1997805_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_013947737.1\|1997806_1998277_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_024275883.1\|1998971_2001668_-	methionine synthase	NA	NA	NA	NA
WP_157135422.1\|2001717_2002410_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_024275884.1\|2002414_2003476_-	homocysteine S-methyltransferase family protein	A0A140XBC7	Dickeya_phage	9.4e-15	54.8
WP_013947741.1\|2003502_2004417_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA
WP_013947742.1\|2004416_2005448_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_024275885.1\|2005585_2006206_+	hypothetical protein	NA	NA	NA	NA
WP_155831224.1\|2006332_2006935_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013947746.1\|2007176_2007815_+	PRC-barrel domain-containing protein	NA	NA	NA	NA
WP_013947747.1\|2007879_2009538_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	2.2e-42	28.2
WP_013947749.1\|2009691_2010426_+	DUF1003 domain-containing protein	NA	NA	NA	NA
WP_013947750.1\|2010535_2011285_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_013947751.1\|2011307_2012357_-	mitochondrial fission ELM1 family protein	NA	NA	NA	NA
2012224:2012241	attL	NA	NA	NA	NA
WP_013947752.1\|2012472_2012961_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_013947753.1\|2012988_2013552_+	hypothetical protein	NA	NA	NA	NA
WP_013947754.1\|2013576_2014065_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_013947755.1\|2014190_2017466_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_013947756.1\|2017618_2018842_-	MFS transporter	NA	NA	NA	NA
WP_013947757.1\|2018962_2019664_-	hypothetical protein	NA	NA	NA	NA
WP_013947758.1\|2019697_2020327_-	hypothetical protein	NA	NA	NA	NA
WP_013947759.1\|2020442_2021480_-	ChaN family lipoprotein	NA	NA	NA	NA
WP_013947760.1\|2021503_2022703_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.5e-40	33.3
WP_013947761.1\|2022877_2023315_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	4.3e-22	45.4
WP_013947762.1\|2023547_2025542_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.1e-112	37.6
WP_013947763.1\|2025653_2027633_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	2.8e-36	34.2
WP_035576171.1\|2027963_2028428_+	VOC family protein	NA	NA	NA	NA
WP_013947765.1\|2028438_2028897_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_013947766.1\|2028934_2029354_+	YjbQ family protein	NA	NA	NA	NA
WP_013947767.1\|2029441_2030017_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_013947768.1\|2030023_2030644_-	hypothetical protein	A0A1D8KJX6	Synechococcus_phage	1.3e-11	29.6
WP_013947769.1\|2030769_2031204_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_013947770.1\|2031218_2031827_+	hypothetical protein	NA	NA	NA	NA
WP_013947771.1\|2031938_2032847_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_013947772.1\|2032938_2033667_-	SIMPL domain-containing protein	NA	NA	NA	NA
WP_013947773.1\|2033879_2034647_+	hypothetical protein	NA	NA	NA	NA
WP_013947775.1\|2034911_2035952_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_041300000.1\|2035926_2036139_-	hypothetical protein	NA	NA	NA	NA
WP_157135423.1\|2036128_2036515_-	hypothetical protein	NA	NA	NA	NA
WP_013947779.1\|2036842_2037058_-	hypothetical protein	NA	NA	NA	NA
WP_013947780.1\|2037163_2037505_+	hypothetical protein	NA	NA	NA	NA
2037449:2037466	attR	NA	NA	NA	NA
WP_013947781.1\|2037678_2038458_+	hypothetical protein	NA	NA	NA	NA
WP_013947782.1\|2038792_2039002_-	hypothetical protein	NA	NA	NA	NA
WP_013947783.1\|2039208_2040444_+\|portal	phage portal protein	I3ULZ7	Rhodobacter_phage	1.9e-35	31.1
WP_041300005.1\|2040433_2040775_+	gene transfer agent family protein	NA	NA	NA	NA
WP_013947785.1\|2040764_2041397_+\|head,protease	HK97 family phage prohead protease	B0VK32	Azospirillum_phage	4.1e-26	38.6
WP_013947786.1\|2041401_2042622_+\|capsid	phage major capsid protein	B0VK33	Azospirillum_phage	8.2e-39	32.4
WP_013947787.1\|2042639_2043026_+	hypothetical protein	A0A0F7L2Y9	uncultured_marine_virus	3.4e-07	33.6
WP_013947788.1\|2043050_2043809_+	putative Ig domain-containing protein	A0A1W6JQC9	Corynebacterium_phage	7.5e-06	45.8
WP_013947789.1\|2043818_2044397_+	hypothetical protein	NA	NA	NA	NA
WP_013947790.1\|2044393_2044762_+	hypothetical protein	NA	NA	NA	NA
WP_050976776.1\|2044766_2045015_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_013947792.1\|2045005_2045350_+	HNH endonuclease	Q38456	Bacillus_phage	5.2e-15	43.8
WP_013947794.1\|2045697_2046222_+	hypothetical protein	NA	NA	NA	NA
WP_013947795.1\|2046218_2046536_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_013947796.1\|2046535_2046937_+	HK97 gp10 family phage protein	B4UTQ0	Rhizobium_phage	1.9e-13	39.1
WP_013947797.1\|2046929_2047343_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_013947798.1\|2047339_2047660_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_013947799.1\|2047656_2049303_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	1.5e-56	29.3

DBSCAN-SWA_3

2191806 : 2263233

Bacillus_phage(15.38%)

tail,protease,capsid,head,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013947941.1\|2191806_2192505_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_013947942.1\|2192553_2193123_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_013947943.1\|2193231_2194737_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	1.2e-26	25.4
WP_013947944.1\|2194837_2195665_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_013947945.1\|2195674_2196679_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_024275904.1\|2196906_2197740_+	LssY C-terminal domain-containing protein	NA	NA	NA	NA
WP_155831226.1\|2197818_2198517_-	hypothetical protein	NA	NA	NA	NA
WP_013947949.1\|2198833_2199532_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013947950.1\|2199556_2201467_-	hypothetical protein	NA	NA	NA	NA
WP_013947952.1\|2201916_2202372_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_013947953.1\|2202501_2203512_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_029670979.1\|2203698_2204922_+	extensin family protein	NA	NA	NA	NA
WP_013947955.1\|2204943_2207451_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_013947956.1\|2207553_2210724_-	multidrug efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.1e-63	22.4
WP_035575800.1\|2210739_2211945_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_013947958.1\|2212188_2212827_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_013947959.1\|2213214_2214279_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_013947960.1\|2214324_2215143_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_013947961.1\|2215139_2215976_+	ABC transporter ATP-binding protein	A0A140XAK6	Dickeya_phage	2.7e-17	49.5
WP_013947962.1\|2216079_2216811_+	urea carboxylase-associated family protein	NA	NA	NA	NA
WP_013947963.1\|2216810_2217458_+	urea carboxylase-associated family protein	NA	NA	NA	NA
WP_013947964.1\|2217463_2221084_+	urea carboxylase	NA	NA	NA	NA
WP_081740973.1\|2221005_2222865_+	allophanate hydrolase	NA	NA	NA	NA
WP_024275909.1\|2223047_2223869_+	quinoprotein dehydrogenase-associated SoxYZ-like carrier	NA	NA	NA	NA
WP_013947968.1\|2223894_2225187_+	sulfite dehydrogenase	NA	NA	NA	NA
WP_013947969.1\|2225173_2225722_+	c-type cytochrome	NA	NA	NA	NA
WP_013947970.1\|2225731_2226562_-	hypothetical protein	NA	NA	NA	NA
WP_013947971.1\|2226776_2227463_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_013947972.1\|2227698_2228913_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA
WP_013947973.1\|2228912_2229350_+	hypothetical protein	NA	NA	NA	NA
WP_024275911.1\|2229407_2230553_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA
WP_013947975.1\|2230629_2233287_+	aminopeptidase N	NA	NA	NA	NA
WP_013947977.1\|2233492_2234539_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_013947978.1\|2234582_2235098_-	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_013947979.1\|2235094_2235607_-	hypothetical protein	NA	NA	NA	NA
WP_013947980.1\|2235627_2236260_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_024275912.1\|2236380_2239356_-	bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA	NA	NA	NA
WP_013947982.1\|2239342_2240788_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_029670984.1\|2240771_2241452_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-29	34.1
WP_013947984.1\|2241571_2243155_-	Do family serine endopeptidase	A0A1B1IT49	uncultured_Mediterranean_phage	1.7e-20	25.9
WP_013947985.1\|2243284_2243764_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_013947986.1\|2243763_2245743_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_013947987.1\|2245755_2246226_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_013947988.1\|2246255_2247428_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_024275914.1\|2247565_2248045_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_013947990.1\|2248217_2249597_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_013947991.1\|2249586_2250258_-	response regulator transcription factor	NA	NA	NA	NA
WP_013947992.1\|2250339_2250630_-	hypothetical protein	NA	NA	NA	NA
WP_013947993.1\|2250720_2252028_-	TIGR02594 family protein	R9TRQ2	Rhizobium_phage	2.1e-16	39.3
WP_013947994.1\|2252181_2256132_-\|tail	glycoside hydrolase/phage tail family protein	A0A0K1LLC1	Rhodobacter_phage	6.2e-253	41.1
WP_013947995.1\|2256204_2256642_-	C40 family peptidase	F4YXU4	Roseobacter_phage	5.0e-31	46.8
WP_013947996.1\|2256725_2257586_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	5.8e-71	47.7
WP_013947997.1\|2257582_2258221_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	7.3e-55	49.3
WP_013947998.1\|2258248_2258839_-\|tail	phage tail tape measure protein	A0A1B2AQ26	Escherichia_phage	1.3e-05	34.1
WP_013947999.1\|2258825_2259014_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_013948000.1\|2259013_2259391_-	gene transfer agent family protein	NA	NA	NA	NA
WP_013948001.1\|2259482_2259899_-\|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	2.9e-20	40.3
WP_013948002.1\|2260023_2260431_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_157135432.1\|2260430_2260601_-	hypothetical protein	NA	NA	NA	NA
WP_013948004.1\|2260597_2260930_-\|head	phage head closure protein	NA	NA	NA	NA
WP_013948005.1\|2260926_2261502_-\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_013948006.1\|2261991_2263233_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	6.3e-79	46.2

DBSCAN-SWA_4

2524445 : 2531481

uncultured_Mediterranean_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013948296.1\|2524445_2525210_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.7e-40	39.0
WP_013948297.1\|2525213_2525459_-	hypothetical protein	NA	NA	NA	NA
WP_013948298.1\|2525477_2526758_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-106	48.3
WP_013948299.1\|2526874_2527024_-	hypothetical protein	NA	NA	NA	NA
WP_013948300.1\|2527244_2527400_-	hypothetical protein	NA	NA	NA	NA
WP_013948302.1\|2528013_2528838_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.9e-47	45.2
WP_013948303.1\|2528842_2529286_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_013948304.1\|2529333_2529540_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.2e-06	60.0
WP_013948305.1\|2529759_2530614_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	4.1e-45	49.4
WP_155831346.1\|2530653_2531481_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	9.5e-31	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage