CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016790	Corynebacterium diphtheriae VA01, complete sequence	2 crisprs	cas1,cas2,DEDDh,cas3,WYL,cas4,csa3,DinG	0	3	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016790_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016790_1

39331-39878

TypeII

Consensus_repeat	Method
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CRISPRCasFinder
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CRT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	PILER-CR

8 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_016790_1

>merge|NC_016790|1|39331-39878|CRISPRCasFinder,CRT,PILER-CR
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCGTCGTACGCGAGAACCAAATCTGGGTAGGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCCAGTATGAGTGCCAAGCGCCTTGCCTAGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCTAGCGGCCTCGCAGATCATGACAAGGCGCTCAGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCGACTTTGCCATTACGCGACGTTACAGTTGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCCTCACCCACCTGCACAAAGTCGCCTAGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCGTGCGCTCAAAGTCGATTGCGGCGGCCAGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCACACCGGCGGGTGAGTTACGCCGGCCAGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCCGCACCAGCGGGGATGAACCGTAGGAGAAGTTTATCAGGGTTTTTGGGAATGAGGGTGCCTG

>NC_016790|1|1|39331-39815|CRISPRCasFinder
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GTCGTACGCGAGAACCAAATCTGGGTAGG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCAGTATGAGTGCCAAGCGCCTTGCCTA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCTAG	CGGCCTCGCAGATCATGACAAGGCGCTCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GACTTTGCCATTACGCGACGTTACAGTT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCTCACCCACCTGCACAAAGTCGCCTAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GTGCGCTCAAAGTCGATTGCGGCGGCCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	ACACCGGCGGGTGAGTTACGCCGGCCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC

>NC_016790|1|1|39331-39878|CRT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GTCGTACGCGAGAACCAAATCTGGGTAGG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCAGTATGAGTGCCAAGCGCCTTGCCTA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCTAG	CGGCCTCGCAGATCATGACAAGGCGCTCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GACTTTGCCATTACGCGACGTTACAGTT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCTCACCCACCTGCACAAAGTCGCCTAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GTGCGCTCAAAGTCGATTGCGGCGGCCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	ACACCGGCGGGTGAGTTACGCCGGCCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCGCACCAGCGGGGATGAACCGTAGGA
GAAGTTTATCAGGGTTTTTGGGAATGAGGGTGCCTG

>NC_016790|1|1|39525-39815|PILER-CR
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GACTTTGCCATTACGCGACGTTACAGTT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCTCACCCACCTGCACAAAGTCGCCTAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GTGCGCTCAAAGTCGATTGCGGCGGCCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	ACACCGGCGGGTGAGTTACGCCGGCCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016790.1\|WP_014307737.1\|49983_50472_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|224630
NC_016790.1\|WP_003849883.1\|41779_42049_-\|cell-division-protein-CrgA	unknown	unknown	gnl\|CDD\|178907
NC_016790.1\|WP_014301108.1\|47179_48529_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|223843
NC_016790.1\|WP_014302674.1\|51868_52168_-\|hypothetical-protein	unknown	unknown	unknown
NC_016790.1\|WP_044048936.1\|31037_31238_+\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|273754
NC_016790.1\|WP_003853358.1\|38950_39280_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_016790.1\|WP_014311130.1\|32024_33035_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|235528
NC_016790.1\|WP_014311133.1\|34794_38049_+\|HNH-endonuclease	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|375896
NC_016790.1\|WP_014301100.1\|38052_38967_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NC_016790.1\|WP_014311138.1\|45722_47183_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NC_016790.1\|WP_014311127.1\|29300_29969_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NC_016790.1\|WP_014311136.1\|42165_44187_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	unknown	unknown	gnl\|CDD\|270916
NC_016790.1\|WP_014311129.1\|31239_32025_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NC_016790.1\|WP_044048938.1\|50485_51352_-\|DUF3662-and-FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|378850
NC_016790.1\|WP_014311131.1\|33031_33886_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|237797
NC_016790.1\|WP_014311139.1\|48529_49984_-\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|223704
NC_016790.1\|WP_014311141.1\|52574_53090_-\|hypothetical-protein	unknown	unknown	unknown
NC_016790.1\|WP_014311137.1\|44183_45710_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_016790.1\|WP_010933961.1\|27517_29317_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NC_016790.1\|WP_014311128.1\|29965_31054_+\|glycine-oxidase-ThiO	unknown	unknown	gnl\|CDD\|274092

Protein	Function_ID	Function_description	E-value
NC_016790.1\|WP_014307737.1\|49983_50472_-\|FHA-domain-containing-protein	gnl\|CDD\|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	4.98161e-18
NC_016790.1\|WP_003849883.1\|41779_42049_-\|cell-division-protein-CrgA	gnl\|CDD\|178907	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed.	2.52021e-46
NC_016790.1\|WP_014301108.1\|47179_48529_-\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	2.78845e-82
NC_016790.1\|WP_044048936.1\|31037_31238_+\|sulfur-carrier-protein-ThiS	gnl\|CDD\|273754	TIGR01683, thiamine_biosynthesis_protein_ThiS, thiamine biosynthesis protein ThiS. This model represents ThiS, a small, ubiquitin-like thiamine biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	6.72491e-21
NC_016790.1\|WP_003853358.1\|38950_39280_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.12332e-19
NC_016790.1\|WP_014311130.1\|32024_33035_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|235528	PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated.	0
NC_016790.1\|WP_014311133.1\|34794_38049_+\|HNH-endonuclease	gnl\|CDD\|375896	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain. This is an alpha-helical lobe domain found in Cas9 proteins. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. Amino acid residues located in both the nuclease and alpha-helical lobe clefts are highly conserved within type II-A Cas9 proteins.	2.35234e-121
NC_016790.1\|WP_014301100.1\|38052_38967_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	9.16407e-115
NC_016790.1\|WP_014311138.1\|45722_47183_-\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	6.97513e-81
NC_016790.1\|WP_014311127.1\|29300_29969_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	5.15963e-63
NC_016790.1\|WP_014311136.1\|42165_44187_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.28103e-122
NC_016790.1\|WP_014311129.1\|31239_32025_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	3.27435e-147
NC_016790.1\|WP_044048938.1\|50485_51352_-\|DUF3662-and-FHA-domain-containing-protein	gnl\|CDD\|378850	pfam12401, DUF3662, Protein of unknown function (DUF2662). This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with pfam00498.	7.32583e-42
NC_016790.1\|WP_014311131.1\|33031_33886_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|237797	PRK14713, PRK14713, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	7.9684e-109
NC_016790.1\|WP_014311139.1\|48529_49984_-\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.39833e-73
NC_016790.1\|WP_014311137.1\|44183_45710_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.15999e-107
NC_016790.1\|WP_010933961.1\|27517_29317_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NC_016790.1\|WP_014311128.1\|29965_31054_+\|glycine-oxidase-ThiO	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	2.85179e-124

>NC_016790.1|WP_003853358.1|38950_39280_+|CRISPR-associated-endonuclease-Cas2
MPKKGSDPVWCVVMFDLPVKTKTQRKQATAFRQNLLDLGFCMAQLSVYVQYLPLAAKLSNLVKLIKEKLPPGGDVRILSVSDIQWSKMIRFSSSAEVSGEEKPDQLAIF
>NC_016790.1|WP_014301100.1|38052_38967_+|type-II-CRISPR-associated-endonuclease-Cas1
MNPGWRVVDLIDFDGKVSYQRGQLAITSDSGELRATLPLAQIAVVLIGNKIIISGAVLVKLSEYDIAVLVCDWRRVPVAGSFSWNEHTRIAARQRAQASLSLPRQKSAWAQIIKAKILGQARTAAQLGFDATDLKNLARAVRSGDVDNREAMAAKRYWEIISTEDDFRRLPGLAATGWNGALDYAYTVLRGHGMRAICSAGLVGTLGVFHHGRGNQFALVDDLIEPFRPAIDYAVFSIVSNAQELDKETKRQLVAAVEEPFNSAGQSIPTVFTAFAQQYGRYVEGDVEKLVPPIWEGPFDAEER
>NC_016790.1|WP_014311133.1|34794_38049_+|HNH-endonuclease
MKYHVGIDVGTFSVGLAAIEVDDAGMPIKTLSLVSHIHDSGLDPDKMKSAVTRLASSGIARRTRRLYRRKRRRLQQLDKFIQRQGWPVIELEDYSDPLYPWKVRAELAASYIADEKERGEKLSVALRHIARHRGWRNPYAKVSSLYLPDEPSDAFKSIREEIKRASGQPVPETATVGQMVTLCELGTLKLRGEGGVLSARLQQSDHAREIQEICRMQEIGQELYRKIIDVVFAAESPKGSASSRVGKDPLQPGKNRALKASDSFQRYRIAALISNLRVRVDGEKRILSVEEKNLVFDHLVNLAPKKEPEWVTIAEILGIDRGQLIGTATMTDDGERAGARPPTHDTNRSIVNSRIAPLVDWWKTASALEQHAMVKALSNAEVDDFDSPEGAKVQAFFADLDDDVHAKLDSLHLPVGRAAYSEDTLVRLTRRMLADGVDLYTARLQEFGIEPSWTPPAPRIGEPVGNPAVDRVLKTVSRWLESATKTWGAPERVIIEHVRDGFVTEKRAREMDGDMRRRAARNAKLFQEMQEKLNVQGKPSRADLWRYQSVQRQNCQCAYCGSPITFSNSEMDHIVPRAGQGSTNTRENLVAVCHRCNQSKGNTPFAIWAKNTSIEGVSVKEAVERTRHWVTDTGMRSTDFKKFTKAVVERFQRATMDEEIDARSMESVAWMANELRSRVAQHFASHGTTVRVYRGSLTAEARRASGISGKLEFLDGVGKSRLDRRHHAIDAAVIAFTSDYVAETLAVRSNLKQSQAHRQEAPQWREFTGKDAEHRAAWRVWCQKMEKLSALLTEDLRDDRVVVMSNVRLRLGNGSAHEETIGKLSKVKLGSQLSVSDIDKASSEALWCALTREPDFDPKDGLPANPERHIRVNGTHVYAGDNIGLFPVSAGSIALRGGYAELGSSFHHARVYKITSGKKPAFAMLRVYTIDLLPYRNQDLFSVELKPQTMSMRQAEKKLRDALATGNAEYLGWLVVDDELVVDTSKIATDQVKAVEAELGTIRRWRVDGFFGDTRLRLRPLQMSKEGIKKELAPELSKIIDRPGWLPAVNKLFSEGNVTVVRRDSLGRVRLESTAHLPVTWKVQ
>NC_016790.1|WP_014311131.1|33031_33886_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MTPHILTIAGSDPSGGAGIQADLKSIMAAGGYGMAAITALTAQNTCGVTAIHTPPTEFLSEQLRTISDDITIHAIKIGMIGSAEAATAIATWLDQLHHTPIVVLDPVMVATSGSVLGERHYFEPLLHHATVITPNLPELAVLTNNHDPEQAEHAARSLAEQYDCAVLLKGGHRHGTNDLGNTWITASGPQFHAPSPHIHTTNTHGTGCSLSSALATRLAIEPLEPALHWATTWLNGAIAHGSNLNVGHGNGPIDHSYRLGEYSANCNTHPKNSRKATFNMAPQL
>NC_016790.1|WP_014311130.1|32024_33035_+|ThiF-family-adenylyltransferase
MLDELERQRVARQLRLPGFGIEQQEKLNKGRVLVIGVGGLGSPALQSLAAAGVGSIRLVDNDTVDVSNIQRQILFGVGDVGRSKVHVAAERLRAIQPGIRIDAHIERLTAHNAHELAEGCDVILDGSDTFATKFLCGDLAEITGIPLVWGSVLQFDGHMGVFTREVGLRDLFPEAPTQGLNCADAGVLGATTAVIANLMATETIKILAGIGTVQPGAVTTYNALTSTFRTYTVGRDPLRPAARTLHTWTLPNEYELIDVREPHEIEHTPSGAHITLPQSMWNDTTAIQHALDNITIDDVVVVCASGIRSAAFIEQFAHLNPHLTFHNVPGGINELP
>NC_016790.1|WP_014311129.1|31239_32025_+|thiazole-synthase
MLTIADRSFQSHLIMGTGGASSFDTLEKSLIASGTELTTVAMRRHAAHTGAHGESVFELMQRLNITPLPNTAGCRTSRDAILTAQLAREALNTSWIKVEVIADDTTLLPDVLELIDATETLTNDGFTVLAYTSDDPVVAQRLEDAGAAAVMPLGSPIGTGLGILNPHNIELICSRATVPVLLDAGIGTASDATLAMELGCSGVLLASAINRCINPITMATAMKHAVEAGRLAREAGRIPRREHAVASSSFEGLASWADEVL
>NC_016790.1|WP_044048936.1|31037_31238_+|sulfur-carrier-protein-ThiS
MNIYINDTPTAIESPQLTDIISNHCNGIRPGIAVAINQRVIPRSQWDTTTVTAGDHLDILTAVQGG
>NC_016790.1|WP_014311128.1|29965_31054_+|glycine-oxidase-ThiO
MKIAVVGGGIVGLSTAFELRTRGHSVHVFDPNPASGASRFAGGMLAPAAEVQFQQDPLFPLMKRAGELWPDMVRRVAQHTNLPTGYRTDGTLVVAADRADAEHLKQLRAAQESAGMDVRPITTRQARGLEPALGPRLSAAVHIPNDNQVAPRVFLTALLDALDDCGVEVVKEEITDLEPLYQQFDVVVLAAGLGAQHLSPIPLALRPVRGDILRVQTEPGAVNMVVRGWVNDRPIYIIPRANGEIAIGATSREDERDLPSVEGIYDLLRDAIRVVPGIVDSSLIEANVGVRPGTPDDLPYLGWASDRLIISTGYFRHGILLSALGAHVTACLIDGTDPGIDLTACAPDRHHNERGTTHEHLH
>NC_016790.1|WP_014311127.1|29300_29969_+|thiamine-phosphate-synthase
MLPTPRWGRDFDPRCYFVTGTGSVDHIVDVTRQAARAGAGLIQVRSKPIAARDLYILGREVARAVAEVNPRTRVLIDDRVDVALALMNNGEHIHGIHVGQDDLPVRHVRALLGDNAIIGLTTGTLELVRASRQVAEVIDYIGAGPFRPTPTKDSGRAPVGLVGYPSLVAESLVPVVAIGDVRPEDAADLAATGVAGVAIVRALMNSQDVAADVKLVLKGFAQ
>NC_016790.1|WP_010933961.1|27517_29317_+|phosphomethylpyrimidine-synthase-ThiC
MSAASANSVTNPSAWENSEIHPKHSYSPIVSGDLEVPETEIQLDDSPTGPNDPVRIYRTRGPECDPTVGLKPLRAQWIDSREDTEEYAGRERNLADDGRSAQRRGAASLEWKGVKPTPRRAKQGKRVTQMHYARQGIITKEMEFVALREHMDPEFVRSEIARGRAIIPNNINHPESEPMIIGRKFLTKINANIGNSAVTSSIEEEVSKLRWATRWGADTVMDLSTGDDIHTTREWIIRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTVIEQCEQGVDYMTIHAGVLLAYIPLTTKRITGIVSRGGSIMAGWCLAHHKESFLYEHFDELCEIFAQYDVAFSLGDGLRPGSVADANDAAQFAELKTIGELARRAWEYDVQVMIEGPGHVPLNMVQENNELEQKWAHDAPFYTLGPLVTDIAPGYDHITSAIGAAHIAMGGTAMLCYVTPKEHLGLPNRDDVKTGVITYKLAAHAADVAKGHPGARAWDDAMSKARFEFRWHDQFALSLDPDTAIAYHDETLPAEPAKTAHFCSMCGPKFCSMRISQDIRDMFADKIADLGIPQVGGDAEAGMAAKSEEFVAQGSQLYSEVRDNAAHA
>NC_016790.1|WP_003849883.1|41779_42049_-|cell-division-protein-CrgA
MPKSKINHSSTAYTAGSTANRTPVKINSTGTPLWYKIIMFGLILAGLLWLIVNYLAGQDISFMTELGPWNYGIGFGLFIIGLLMTMGWR
>NC_016790.1|WP_014311136.1|42165_44187_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase
MTDIVLADRYRLGDVIGTGGMSEVYEATDVLLGRKVAVKMLRADLARDVNFRERFRREAQNSGKLNHPAIVAVYDTGETPRAGLNTPYIVMELVNGRTLRDIVREDGPLTPSQAAHTLIPVCHALQVSHDAGIIHRDIKPANVMITNTGAVKIMDFGIARALDDATSAMTQTSAVIGTAQYLSPEQARGKLADARSDVYALGCVLYETLTGKPPFEGETPFAVAYQHVQEDPVKPSEYIADLSPTAAINVDAVVLTAMAKHPGDRYQTAQEMCADLERLGRNAVTDAARHYVTPTSFATQDPASTTVVPVTQVTELDHAEAGAGIGAGVVPAGAVAGSAAVAGSGGAHAAPRSSNRGLRILAAILAVLVLAVGAGFAIDYFGGGPFSQRSTVTIPKLQNSTQQDAVNQLEKLGLQVNVIEEPNPDIPRGKVIRTNPTDGSNVQRNSTVRLTISSGKEITEVPDLSGKNTADAVKILEAAGLLLDPTVREDSSDTVPKGEIIEVSPAAGSQVSRGSKVSITVSTGVETVRVPVITGMKWDQAEGNLTSLGFKPEVVRVDSVEPAGTVVAVPDEGAEVPKGSSVTVQISNGAMFTVPEITRQTIGDAVRILHDAGWKGNASRLIQAAKVPTVAVTDQNLIASQLPTPGTALRKDAPIEIRLYEFNLAALVPPAQH
>NC_016790.1|WP_014311137.1|44183_45710_-|serine/threonine-protein-kinase
MTQSQSPDPALQALVGSDYALQWVVGNGGMSTVWLADDLRNQREVAIKVLRPEFSDNEEFLSRFRNEALASEHIDSDNVVRTYDYREVTDDMGRTLCFIVMEYVRGESLADMLARKGRLEEDLALDVLEQAAHGLSIIHRMGMVHRDIKPGNLLITQNGQVKITDFGIAKAAAAVPLTRTGMVVGTAQYVSPEQAQGRDVTAATDVYSLGVVGYEMLVGQRPFTGDSSVSVAIAHINQAPPAMPTSVSAPARELIGIALRKDPAHRYADGNELALAVSATRMGQRPPQPKSAPLQHIAPQPAPTESTYALGATAQPTTVIPATGQVPAAPTAAPAAAAYPASTVIPAGTPRQEPEKQSSGWGAGIVVGALAALLLGTAAWAASQGMFDDLFDKTSQSSESSVPPPPVTATVTETPTPQITTVVPEPLPTSSPEPTPSETKRTPDESHPSSDHQLPSVRPSHNGRPSSQAPHAPHAPTQDADQPAESPAPDTLDSLIENLNKLNQGGAQ
>NC_016790.1|WP_014311138.1|45722_47183_-|penicillin-binding-protein-2
MNRSIRFTSVFALLLILILLVNLTIIQGFSQEKYAHNALNRRGFIELKSQARGQISTGGQVLAESYQDEEGFYQRRYVTNPAIYGPIEGYLSDIYGASGMESNLNGVLSGTDSSVSVRRWTDELLGRKHSGANVELTLLPQAQEVAYNQMANAGYEGAVVAIKPSTGEILAMASTPSYDPSAIVNPDTAEQTWAALNADPGNPLLNHATQETLPPGSTFKVITTAAGLNAGYGPGSMLTGQDRITLPDGITTLENYAGQTCAGSQNVTLATAFQYSCNTAFVQMGIDVGKEKFDEAAHAFGVNDRYDLGVDMAPGTIGDVSDPSARGQSSIGQRDVAMSVLHNAVVAATVANGGKRMEPHLVSRIVGQDLKVIKETKPHQINEAVTPEVAATLTDLMRLSERHTAGYTGADIASKTGTAEHGEDSRNSNPHAWYIAFGPSANADVAVAVVVKNGGDAGQAATGGSVAAPIGRAVIAAAQAALAARG
>NC_016790.1|WP_014301108.1|47179_48529_-|FtsW/RodA/SpoVE-family-cell-cycle-protein
MTFLRRITARPVEFGLLVMATLLIAVTLINLNMAQGLSVTSETLWVIGGFIGVFTIAHLALCFTAPHADQVMLPVASVLNGLGLVMVYRIDLARDTALASRQVIWTLVGILLMIAVLVFIRDHRMLSRYSYVLGLLGLILLALPMVWPTKMNADANIWISIGPFSVQPGEFSKILLLIFFAQLLVNKRALFNVAGYRFLGLEFPRLRDLGPILGVWAFAILVMAGENDFGPALLLFSTVLGMLYLATNRVSWLIIGAALVAVGGTALYQISSKIQSRVTNFINPLDNFNGTGYQLSQSLFGLSSGGVAGAGLGLGHPELIPVAESDFILAAVGEELGFIGLAAVLVLFAIFITRGLRTALRARDSYGKLMAAGLSLTLAIQVFVVTAGITALMPMTGLTTPFMSQGGSSLMANYILLGLILRISHSTQAAANDVVSMDEQAARGQEAHR
>NC_016790.1|WP_014311139.1|48529_49984_-|protein-phosphatase-2C-domain-containing-protein
MLRLNYAAASDRGLVRGNNEDSAYAGPHLIALADGMGGHAAGEVASQLMINHLMRLDADVDDNDMLALLASVADDANRAIAQGVRDVPETDGMGTTLTALMFNGADLAMCHVGDSRGYRLRDGALEQITVDDTYVQSLVDKGQLAPEDVSTHPQRSMILKAYTGRPVEPTLKMIDIRPGDRFLLCSDGLSDPVTHSTIETTLQQGTPQEAARRLVDLALRSGGPDNVTVVVADVVEADGSDESAAAASLPVTPLTVGALNSGMPEDPRPDTAAGRAAMAITQRQPQVILPDPEPVKEATPSPRRRMVAVISALVVLAVLISAGWWGSSMVKNNYYVTTADSDSAQGTLVIENGIDVSLLGKSLHSTYQFACLSPEGDLTFVDSADAEKSCHRFRLSDLKESARGQVSTLPDGSYDEVQQQLQRLAEQTLPACITRQAAHPKDKDKKKPAAPSSAAPTTTKAASPSSTGSPDDLSTPGETCREVK
>NC_016790.1|WP_014307737.1|49983_50472_-|FHA-domain-containing-protein
MESVIVFLLRIALLVLLWLLILLALYIQRKDAKSAAQTTVAPQAVTGLGVSSASSPLKKVSRRGGAPQQIVVVEGPLTGSSMQLDSLTEITLGRSKDCDFVVGDDYASARHARLIKRGSEWFAEDLDSRNGTYVGGYRIDQPEKVSAGSDIKIGRTTVRLVA
>NC_016790.1|WP_044048938.1|50485_51352_-|DUF3662-and-FHA-domain-containing-protein
MSIMGKVAKLDSAMQRGLDNSFAFVFGGKLVPAEIEELLKQEVQDNIVRAYEGGVESPNVFRVRVSRKDAQNLAQRYPSLADDFADRLSRYTRNQGWSTEGPVVVTIAADSGLRTGQLHASSAFDPAPQEYSRFIGVEDDVAAAAPTNDESNYESESGMNSYDADPRTEYMTAQAPDAIYTEVPVPEPKATPTVSLLLQDGSSRTYLVEEGSNIIGRSNEAHFRLPDTGVSRQHAEITWNGHDAILTDLKSTNGTTVNDTPVENWLLEDGDVITVGHSHIEVRIVEPN
>NC_016790.1|WP_014302674.1|51868_52168_-|hypothetical-protein
MKEKKLSSLVFGNVILESQILGTTIRIYADDMRSYSFRPSPYASLSVPLNELKGQLQPDHAEALAKKVFDSVAEELNKNYPGGCERAEKELKAWLMHTN
>NC_016790.1|WP_014311141.1|52574_53090_-|hypothetical-protein
MNSQIKERFYDFAISNGNPHSRWRTPRSTRLLITGYFVSLVLALIFELLMFAWIHFIWIFIACMFIAMTCWTVLRSTIDLKDMAPEDRLDDYEKAVINQWRQRSLSTALSLLFIGGLAAIIASASFIATDSPLSPNLLAIFAGLYMIYTYIFASSLPAVGYALTFNRNPEE

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Crispr_ID: NC_016790_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016790_2

1454898-1455010

Orphan

Consensus_repeat	Method
GCTGGTTTAGGAGCCGCAGGCTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_016790_2

>merge|NC_016790|2|1454898-1455010|CRISPRCasFinder
GCTGGCTTTGGAGCCGGCTTCTTTTCTGCTGCCGGCTTAGGCGCAGCTGGTTTAGGAGCCGCAGGCTTAGCCGTTTGTTGCGGAGTTGCTGCTGGCTTAGGCGCTGCAGGTTT

>NC_016790|2|2|1454898-1455010|CRISPRCasFinder
GCTGGCTTTGGAGCCGGCTTCTT	TTCTGCTGCCGGCTTAGGCGCA
GCTGGTTTAGGAGCCGCAGGCTT	AGCCGTTTGTTGCGGAGTTGCT
GCTGGCTTAGGCGCTGCAGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_016790.1\|WP_014307022.1\|1461076_1461901_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NC_016790.1\|WP_010935086.1\|1442269_1444537_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131743
NC_016790.1\|WP_014311409.1\|1441343_1442090_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_016790.1\|WP_014311416.1\|1460310_1461057_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NC_016790.1\|WP_014307015.1\|1447161_1448064_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NC_016790.1\|WP_010935095.1\|1456928_1457483_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NC_016790.1\|WP_003851930.1\|1461899_1463246_+\|YdiU-family-protein	unknown	unknown	gnl\|CDD\|234583
NC_016790.1\|WP_003851932.1\|1464393_1464903_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|376440
NC_016790.1\|WP_003851923.1\|1455345_1455678_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NC_016790.1\|WP_014311410.1\|1446167_1447139_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_016790.1\|WP_010935090.1\|1448060_1448753_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225524
NC_016790.1\|WP_003851917.1\|1448749_1449556_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|224327
NC_016790.1\|WP_003851924.1\|1455933_1456932_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NC_016790.1\|WP_014311411.1\|1449602_1450922_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NC_016790.1\|WP_010935097.1\|1458521_1460279_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NC_016790.1\|WP_014311413.1\|1451790_1452234_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NC_016790.1\|WP_003851911.1\|1444729_1444999_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NC_016790.1\|WP_003851913.1\|1445170_1446130_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239116
NC_016790.1\|WP_014311415.1\|1457534_1458443_+\|DUF4439-domain-containing-protein	unknown	unknown	gnl\|CDD\|373114
NC_016790.1\|WP_014311417.1\|1463249_1464374_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597

Protein	Function_ID	Function_description	E-value
NC_016790.1\|WP_014307022.1\|1461076_1461901_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	4.33219e-104
NC_016790.1\|WP_010935086.1\|1442269_1444537_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NC_016790.1\|WP_014311409.1\|1441343_1442090_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	1.81546e-92
NC_016790.1\|WP_014311416.1\|1460310_1461057_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	4.11786e-80
NC_016790.1\|WP_014307015.1\|1447161_1448064_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	3.07997e-177
NC_016790.1\|WP_010935095.1\|1456928_1457483_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	3.05092e-39
NC_016790.1\|WP_003851930.1\|1461899_1463246_+\|YdiU-family-protein	gnl\|CDD\|234583	PRK00029, PRK00029, YdiU family protein.	5.42865e-154
NC_016790.1\|WP_003851932.1\|1464393_1464903_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|376440	pfam01035, DNA_binding_1, 6-O-methylguanine DNA methyltransferase, DNA binding domain. This domain is a 3 helical bundle.	4.85709e-35
NC_016790.1\|WP_003851923.1\|1455345_1455678_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	1.00255e-19
NC_016790.1\|WP_014311410.1\|1446167_1447139_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.04257e-140
NC_016790.1\|WP_010935090.1\|1448060_1448753_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225524	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism].	2.47862e-55
NC_016790.1\|WP_003851917.1\|1448749_1449556_-\|metallophosphoesterase	gnl\|CDD\|224327	COG1409, Icc, Predicted phosphohydrolases [General function prediction only].	1.03531e-18
NC_016790.1\|WP_003851924.1\|1455933_1456932_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	6.55163e-171
NC_016790.1\|WP_014311411.1\|1449602_1450922_-\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.79256e-95
NC_016790.1\|WP_010935097.1\|1458521_1460279_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NC_016790.1\|WP_014311413.1\|1451790_1452234_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.13066e-41
NC_016790.1\|WP_003851911.1\|1444729_1444999_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.46579e-51
NC_016790.1\|WP_003851913.1\|1445170_1446130_-\|nucleoside-hydrolase	gnl\|CDD\|239116	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	3.13168e-131
NC_016790.1\|WP_014311415.1\|1457534_1458443_+\|DUF4439-domain-containing-protein	gnl\|CDD\|373114	pfam14530, DUF4439, Domain of unknown function (DUF4439). This domain has a ferritin-like fold.	3.21711e-08
NC_016790.1\|WP_014311417.1\|1463249_1464374_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	4.32485e-103

>NC_016790.1|WP_014311413.1|1451790_1452234_-|30S-ribosome-binding-factor-RbfA
MVDYARAARLAKRIQTIVATAIEREVKDRRLEYVTVTDTRVTGDLHDATVYYTVRGRTIDDQPDLKAAAEALQRARGQLRKIVGDQLSVRFTPTLSFELDTVPEASAHMEDLLARARARDLELAELKKNAQPAGDAHPYKDDDAMND
>NC_016790.1|WP_014311411.1|1449602_1450922_-|MATE-family-efflux-transporter
MNTSLNDTADRSAHITAVTVLALALPSLGVLAATPLYLLLDTAVVGGLGTVALAALGAGTVIYSQVTTQLTFLSYGTTARSARLYGAGKQGEAVYEGVQATWIALLVGAVLATILFFGAPTFAWWLTGNREVANNAGHWLRITAFGVPMILAIMAGNGWLRGIQNTRAPLVFTLAGVIPGACAVPFFVHWWGLVGSAWANLMGTSITAVLFVGCLARYHRGSWRPQWRIMKTQLVLGRDLILRSFSFQVSFLSAAAVAGRFGAESLAAHQVLMQLWGFLTLVLDSLAIAGQTLTGAALGAGSAAVARAVGQKSIRYSTFFGVVLAAVFAVGWSVIPQVFTRDTNVLNVMAGPWWQLVALIALGGVVFALDGILLGASDAAFLRTVSIASVVCGFLPGVWLALIFDAGLVGVWWGLIAFLCIRLGTCWWRFRSMKWARVS
>NC_016790.1|WP_003851917.1|1448749_1449556_-|metallophosphoesterase
MVQTLWAVADLHAAVRANGGRIDTIQPHDPSDWLIVAGDVAERTSVVIDVLHELRQRFATVIWVPGNHELFCRSSDRFQGRAKYDELVRRCRQIDVLTPEDPYPVFHGVTVVPLFTLYDYSFRPEGLTIEAALQSAHDKQLVLTDQFAIAPFVDIRAWCWDRLAYSVHRLSRERGPKILINHWPLVQEPVSELPIPEIGLWCGTRHTRSWPVRYSAITVVYGHLHVPNERIIDGVRHVEVSLGYPHQWSQNIEDRSWPFPVMTSEVVA
>NC_016790.1|WP_010935090.1|1448060_1448753_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MIAGNNSEYALDSRLFPQSARSTALLVPRHTPDLSNFNRLHVLEKAQVKNAVAVRRAEFGDARWCAHQSLRKLGLYDHPAILRGERGMPLWPVGIAGSLTHTEGLRAAVVAPTTEVASMGIDAEIAEELPGGILGSIARPNEIAMLDDLRARGLLFADRLLFCAKEATYKAWFPITQRWLDFDQAEIDIRADGTFISYLLIRPTPFPFIEGKWAIHDGYVVATTVIPAMG
>NC_016790.1|WP_014307015.1|1447161_1448064_+|tRNA-pseudouridine(55)-synthase-TruB
MNDALANSGLVIVDKPEGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVASTKSYAATIRLGAATTTDDREGETIASASPDQLAAITETKISDAVKQFRGSIMQRPAAVSAIKIDGKRAHQRVREGEKVEIPARPVTISRYDILEIRRDAAFIDIDVEVDCSSGTYIRSLARDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEENPHVSLTLDQALAASYPVLSVSEKEASDLAMGKWLTPRGLKGIHAAVDPHGRAIALVKEQGKRLATIFVARPSTL
>NC_016790.1|WP_014311410.1|1446167_1447139_-|bifunctional-riboflavin-kinase/FAD-synthetase
MDQVDIWHRLEDIPADLKASVITIGVFDGVHRGHRTLVAAATDRAQALGVPSVLVTFNPHPLSVLRPDKMPPLLGTVNQRADLAESLGVDHMFAMNFTAELSHLSPEEFFCSVIKDKLNAQAVVVGKNFTFGYKAAGTTGTLKALGEKYGVEIYVLDLLTENGDVVSSTAIRSDLLEGDIRRANWGLGREFSVHGDVVRGAGRGGKELGFPTANLYFPDSIALPEDGVYAGWLTVTSSAPIDGDMVRGVRYPAAISVGHNPTFGDKRRSVESFVLDRHADLYGHSIVVEFVDRIRPMVKFDGIDELLVAIENDVTQTRAILHI
>NC_016790.1|WP_003851913.1|1445170_1446130_-|nucleoside-hydrolase
MKKIILDLDTGIDDALALAYTLGSPELDLIGVTATYGNVLVETGVRNDLALLELFGRSDVPVFAGEPHALAKDGFEVLEISAFIHGKNGIGEAEVAEPVGVVQELSAVDFLIESVERYGDELIIVPTGAMTNIAAAMKKSETFARDAQIVFMGGALTVPGNVSQWAEANVNQDPEAADIMVRNAGDITMVGLDVTLQTLLTYAETATWRALGTPAGNFLADATDYYIKAYDTTAPHLGGCGLHDPLAVGVAIDPSLVTLVPINLKVDTEGPTRGRTIGDEVRLNDPHKNCKVAVGVDVDRFLKEFMERITRVAQGSNVR
>NC_016790.1|WP_003851911.1|1444729_1444999_-|30S-ribosomal-protein-S15
MALSTEQKKSILAEYGLHETDTGSPEAQVALLSARINQLTEHLKFHKHDHHSRRGLLLLVGRRKGLLKYLADNNVDRYRDLIARLGLRR
>NC_016790.1|WP_010935086.1|1442269_1444537_-|polyribonucleotide-nucleotidyltransferase
MSTKPSNVVFNIDEEFGITEAIATIDNGDFGKRTIRFETGQLARQADGSVTTYLDDDTMLLATTTASNQPREGFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFVKGLRNEVQVVITVLSVNPQDMYDVVAINGASAATQLSGLPVSGPVGGVRMALIADDAHPKGQWIAFPTHEQHEQALFELVVAGRIVSKKQGKKTVDDVAIMMVEAGATEQVVDRVKAGAPAPTESVVAEGLEAAKPFIEVLCRAQAGLAERAAKETQEFPLFPPYTDVVYDAVEKKVSKKLRSLLTIKSKQDRDEATNAYMEEIEADLIAQLGSDDEAAASKAIRAAYNAVMKKIVRHMILTEHFRIDGRGVTDIRDLGVEVDLIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDSLTPATSKRYIHHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVIPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSDEVDGETRYVALTDILGAEDAFGDMDFKVAGTRQFITALQLDTKLDGIPSEVLAQALSQANDARNTILDTMAEVIETPDEMSDYAPRITAITVPVNKIGEVIGPKGKTINSITEETGANISIEEDGTVYVSAASGAAAEAAIEKINAIANPQLPKVGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGGGKRIEKVEDVVNVGDKLEVEILDIDNRGKISLAPVKNED
>NC_016790.1|WP_014311409.1|1441343_1442090_-|4-hydroxy-tetrahydrodipicolinate-reductase
MAIKVGVLGAQGRVGQAIVAGVTAADDLELVAEVDRGDSLDVLVQSGAEVIVDFTTPDSVMDNLEFCISHGIHCVVGTTGFTPERLEIVKKWAEEKGNTGVLIAPNFAISAVLTMAFARQSARFFDSAEVVEYHHPNKLDAPSGTAIHTAEGIAQARREAGMPTQPDATEQSLDGARGSDVNGVKVHAVRMTGMVAHEEVIFGGPGQSLTIRQDSYDRTSFVPGVLVGVRNVAQHLGLTVGLEHYLDI
>NC_016790.1|WP_003851923.1|1455345_1455678_-|YlxR-family-protein
MPSDSNQRSQQRIRTCIARRRPLPEASLLRVVALKGPDESAAVRVIPDPQRKMGGRGAWISPTLEALELAEKRRAFNRALRVSAVVDTGHVREYLAGLTARPNIVRKTEH
>NC_016790.1|WP_003851924.1|1455933_1456932_-|transcription-termination/antitermination-protein-NusA
MNIDVQALKAIEADRNIAVDELLETIARALLFAYQEYKDTNTVENSRARVDINSVTGHVSVIVSELDEDGVVTTEYDDTPENFGRVGAQAVRDAIVRRLREAETLKAYDAYSEYEGRVVSGIVQADIFANEKGIVVIHLGTEVDGQDGILIPAEQIPGESFKHGDRVKAYVVGINRTPRDLQINLSRTHPELVRRLFELEVPEVADGSVEIIGIAREAGHRSKVAVKATVKGLNAKGACIGPRGQRVNNIMNELGGEKIDIIDFDDDPAKFVGNALAPSKVVHVEITDAEAQTAQVTVPDYQLSLAIGKEGQNARLAARLTGWKIDIRSDAS
>NC_016790.1|WP_010935095.1|1456928_1457483_-|ribosome-maturation-factor-RimP
MAFPTVEVLTELVTPVVAQHNMDLEGIRINKAGKKSLVAVSVDSDFRPDLDQLELVSNQISEVFDAGEAAGELSFGAGYTLEVGTPGLDQPLASARRWRRNRHRLVALEVEGKKSVERIGALNDDETAVIVVKRRGKKLVVRSVQLAENTQAVVEIEFAKPAEDELALTALEFDQALDRGEENK
>NC_016790.1|WP_014311415.1|1457534_1458443_+|DUF4439-domain-containing-protein
MREVIFLQRSTTSAISAICLLGCVVACDISPSPDPNATLIDLAAIAHNDAAVLQSKNSALARQRHADSEELISEIQRLCGTNSEGKLPESCSNEIVQGAVDKQAVSLKETVTESDAATRSAQAIVSAIDSAPSESLGLLGQQLVDLVRAGAAAPQSGIAQLNPRNEINKGTSKDDLIHDRESLKKALDWEYSAIYGLGVALAHSPAGTRTAVSDAITAHRDRVELLESSFAESFPNETIPRPEAAYEFSGYPEPHDAQSSRAFFDSLEADSAAWWLHALSESYSATWRALCASLAAQSAARR
>NC_016790.1|WP_010935097.1|1458521_1460279_-|proline--tRNA-ligase
MITRLSTLFLRTLREDPADAEVPSHKLLVRAGYIRRTAPGVYTWLPLGLRTLRKVETVVREEMDAIGAQELLFPALLPREPYEQTHRWTEYGDSLFRLKDRKGGDYLLGPTHEEMFASAVKDMYSSYKDFPVTLYQIQTKYRDEERPRAGILRGREFVMKDSYSFDMSDAGLEDSYQRHREAYQRILDRLGVEYVICAATSGAMGGSASEEFLAVSDNGEDTFVRATEGPYAANVEAVVTQPGVERPLEQAPEAVEYETPNAETIEALVQWAQSAGVTVEDRSVAAADTLKCLLVKITQPGAEEAELAGILLPGDREVDMKRLEASVEPAEVELASEEDFKNNPFLVKGYVGPRALNAHGVKVLADPRVVSGTSWIAGADAVEHHVVGLTMGRDFTVDGYIEAAEIREGDPAPEGQGTLTLARGIEVGHIFQLGRKYTEAFDVQILDESGKRAIPTMGSYGIGVSRLMAVLAEQRHDETGLNWPLEVAPYQVHVVVANKDKEAIEAGDALVAALDSHGIEVLFDDRPKVSPGVKFKDAELLGMPFVVVLGRAFKDGNIELRERGQETVLVSADEIVDTVVAKLNR
>NC_016790.1|WP_014311416.1|1460310_1461057_+|peroxide-stress-protein-YaaA
MLIVLPPSETKAVGGKNPAIDFDSLHFPTLNPIRKEIAHDLARLDISQAQEILKLSQKLLPEAQRNIELFQSPTMPAVLRYTGVLYDALDATSLPSSTWEHLAIGSALFGVVMANDNIPHYRLSGTTKLPCADASVPTLKRRWGNAISTALSDTNEVILDLRSGTYQQLGKVKHAITARVESEDSDGKRSVISHFNKHYKGQLARALLLHDVTPDPDHAIEDLIGMTQECGFAVEHSKPHELTVVITQ
>NC_016790.1|WP_014307022.1|1461076_1461901_-|uroporphyrinogen-III-C-methyltransferase
MVYRIMKKFTEISSRNRKLFKLAGMFSSSESWTASVSLIGGGPGAWDLITVRGMHRLQQADVILADHLGPASELAQLCDVSTKDIIDVSKLPYGKQVAQSKINELLIEHAQAGKKVARLKGGDPYIFGRGFEELQACAKHGIACEVVPGVTSAVSVPALAGIPITQRGVVHSFTVISGHVPPQHPQSLNDWEALARTGGTLSVIMGVKNAGAIAQALIDAGRGADTPVAVVQEGSTENQKSFKTTLAQLGQAMKDNDIKPPAVYVIGEVAGLQA
>NC_016790.1|WP_003851930.1|1461899_1463246_+|YdiU-family-protein
MPLTFAHSFADAVPSLSVPWRAEQWPDPRIIVFNHELGQELGIDEASLLSNITQQGHAQAYSGHQFGQFNPLLGDGRALVLGDCAQTNAPHGQFEISLKGSGPTPFARRGDGRATLGPMLREYLISEALHGLGIPTTRSLAVITTGTDVQRERLLPGAVVVRVAQNHLRVGSVQCAAMRDDDSLAALVRYALSSHEDGVSDAEAAGLLLRRVSTSQAKLVAQWMRFGFVHGVMNTDNVTLSGQTIDFGPCAFIDSFHPQAVFSSIDSHGRYSFGRQPSIMGWNIARLAEALLPLMSIDEARNIVHEFPDMYRRSWLDEMADAVGISPDDDHAAGVLDDLVALLDVHRPDYAQFMRSLSDGTTVSLFPWAQQWEAKVSSLRVAAPRNPVYVPRNYLVEDALEHAMNADMSVFSLLVEAGKNPYLREKRFEKLENPAPETWQDYVTYCGT
>NC_016790.1|WP_014311417.1|1463249_1464374_-|GTP-binding-protein
MSHSTPVTVLSGFLGSGKTTLLNQMLSNRESKKIAVIVNDFSEINIDAALIAGEGHLERGEDKFVELTNGCICCTLRDDLVQSVGALASSGDYDHIVIESTGISEPMPVAATFEWVWDDGTRLADIAPIDTMATLVDASQFLTYMGKKTYLTDRDLGVTEDDERTIADLLVDQVEFADKIYITKSDLVDDERYHATKALVRRMNPRASIDKLVNGRVITASGENRNAINDLLGAMCYDEETARTYQGYVAELDNPHTPETEEYGISSFVFKGDRPFDRQRLIAALRSTRGIVRSKGHCWISDRIDMVQVWHQAGPDLRIAPAGYWQSAGITPSNEIVVIGVNFDHAQAQQLLNDAMLSDSEVQQLLSTADVAKS
>NC_016790.1|WP_003851932.1|1464393_1464903_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MHAEYGFVSTPDGQFCVVTDSMTHKILASGWTENVSELVGLIHRDLRPLSMREAEVSLSIQNVISAYYDGRFARILTVPLLQQATDFRMSVWSALRRIPSGSPVSYATLARMSGHEGAVRAAASACANNPVALFVPCHRVIRSDGSYGGFRYGLAVKRSLLTREVAHNK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016790_1	1.7\|39753\|27\|NC_016790\|CRISPRCasFinder,CRT,PILER-CR	39753-39779	27	NZ_CP009572	Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence	142549-142575	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	124188-124214	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	124066-124092	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	124212-124238	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	124090-124116	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	124196-124222	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	124074-124100	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NZ_CP021924	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2	170385-170411	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NZ_CP021924	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2	171117-171143	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	124568-124594	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	124446-124472	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	124180-124206	4	0.852
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	124058-124084	4	0.852
NC_016790_1	1.7\|39753\|27\|NC_016790\|CRISPRCasFinder,CRT,PILER-CR	39753-39779	27	JN116822	Rhodococcus phage RRH1, complete genome	6655-6681	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	123517-123543	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	123541-123567	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NZ_CP009803	Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence	80081-80107	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	123525-123551	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NZ_CP020471	Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence	88022-88048	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246793-246819	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NZ_CP021924	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2	170263-170289	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	123897-123923	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	123509-123535	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	MK977714	Corynebacterium phage Bran, complete genome	22540-22566	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_048780	Corynebacterium phage StAB, complete genome	22546-22572	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	MK977706	Corynebacterium phage Dina, complete genome	22371-22397	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	MH926061	Corynebacterium phage Troy, complete genome	22111-22137	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_048789	Corynebacterium phage Stiles, complete genome	22038-22064	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_048069	Corynebacterium phage SamW, complete genome	22111-22137	5	0.815
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_048790	Corynebacterium phage Lederberg, complete genome	22496-22522	5	0.815
NC_016790_1	1.6\|39689\|28\|NC_016790\|CRISPRCasFinder,CRT,PILER-CR	39689-39716	28	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	3577-3604	6	0.786
NC_016790_1	1.6\|39689\|28\|NC_016790\|CRISPRCasFinder,CRT,PILER-CR	39689-39716	28	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1043647-1043674	6	0.786
NC_016790_1	1.6\|39689\|28\|NC_016790\|CRISPRCasFinder,CRT,PILER-CR	39689-39716	28	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	152270-152297	6	0.786
NC_016790_1	1.6\|39689\|28\|NC_016790\|CRISPRCasFinder,CRT,PILER-CR	39689-39716	28	NZ_CP039914	Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625c, complete sequence	10215-10242	6	0.786
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	123395-123421	6	0.778
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	123419-123445	6	0.778
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	123403-123429	6	0.778
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246732-246758	6	0.778
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	123775-123801	6	0.778
NC_016790_1	1.8\|39816\|27\|NC_016790\|CRT	39816-39842	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	123387-123413	6	0.778
NC_016790_1	1.6\|39689\|28\|NC_016790\|CRISPRCasFinder,CRT,PILER-CR	39689-39716	28	NC_010906	Neisseria lactamica isolate 410838 plasmid pNL18.1, complete sequence	1210-1237	7	0.75
NC_016790_1	1.6\|39689\|28\|NC_016790\|CRISPRCasFinder,CRT,PILER-CR	39689-39716	28	NC_010888	Neisseria lactamica isolate 811778 plasmid pNL15, complete sequence	1212-1239	7	0.75
NC_016790_1	1.6\|39689\|28\|NC_016790\|CRISPRCasFinder,CRT,PILER-CR	39689-39716	28	NC_010855	Neisseria lactamica isolate 102739 plasmid pNL11, complete sequence	1215-1242	7	0.75
NC_016790_1	1.6\|39689\|28\|NC_016790\|CRISPRCasFinder,CRT,PILER-CR	39689-39716	28	NC_010871	Neisseria lactamica isolate 9225393 plasmid pNL7.1, complete sequence	1212-1239	7	0.75
NC_016790_1	1.6\|39689\|28\|NC_016790\|CRISPRCasFinder,CRT,PILER-CR	39689-39716	28	NZ_CP009154	Burkholderia pseudomallei strain TSV202 plasmid 2, complete sequence	36336-36363	7	0.75

1. spacer 1.7|39753|27|NC_016790|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009572 (Sphingomonas taxi strain ATCC 55669 plasmid STP1, complete sequence) position: , mismatch: 4, identity: 0.852

acaccggcgggtgagttacgccggcca	CRISPR spacer
acgccggcgggtgagctacgccggcgc	Protospacer
**.************.*********

2. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

3. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

4. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

5. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

6. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

7. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

8. spacer 1.8|39816|27|NC_016790|CRT matches to NZ_CP021924 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

9. spacer 1.8|39816|27|NC_016790|CRT matches to NZ_CP021924 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

10. spacer 1.8|39816|27|NC_016790|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

11. spacer 1.8|39816|27|NC_016790|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

12. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

13. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

14. spacer 1.7|39753|27|NC_016790|CRISPRCasFinder,CRT,PILER-CR matches to JN116822 (Rhodococcus phage RRH1, complete genome) position: , mismatch: 5, identity: 0.815

acaccggcgggtgagttacgccggcca	CRISPR spacer
acaccggcgggtgagttgcggcgccgg	Protospacer
*****************.** ** * .

15. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

16. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

17. spacer 1.8|39816|27|NC_016790|CRT matches to NZ_CP009803 (Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcaccagcggggatgctccgtacct	Protospacer
*****************  *****

18. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

19. spacer 1.8|39816|27|NC_016790|CRT matches to NZ_CP020471 (Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtatcc	Protospacer
******  ****************

20. spacer 1.8|39816|27|NC_016790|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggataaaccgttgtc	Protospacer
****.***********.****** *

21. spacer 1.8|39816|27|NC_016790|CRT matches to NZ_CP021924 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttaaa	Protospacer
******  *************** ..*

22. spacer 1.8|39816|27|NC_016790|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

23. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

24. spacer 1.8|39816|27|NC_016790|CRT matches to MK977714 (Corynebacterium phage Bran, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

25. spacer 1.8|39816|27|NC_016790|CRT matches to NC_048780 (Corynebacterium phage StAB, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

26. spacer 1.8|39816|27|NC_016790|CRT matches to MK977706 (Corynebacterium phage Dina, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

27. spacer 1.8|39816|27|NC_016790|CRT matches to MH926061 (Corynebacterium phage Troy, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

28. spacer 1.8|39816|27|NC_016790|CRT matches to NC_048789 (Corynebacterium phage Stiles, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgt	Protospacer
****.*************.****  *

29. spacer 1.8|39816|27|NC_016790|CRT matches to NC_048069 (Corynebacterium phage SamW, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

30. spacer 1.8|39816|27|NC_016790|CRT matches to NC_048790 (Corynebacterium phage Lederberg, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

31. spacer 1.6|39689|28|NC_016790|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.786

gtgcgctcaaagtcgattgcggcggcca	CRISPR spacer
cagcgctgaaagtcgattgcggcgggat	Protospacer
  ***** *****************

32. spacer 1.6|39689|28|NC_016790|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 6, identity: 0.786

gtgcgctcaaagtcgattgcggcggcca	CRISPR spacer
cagcgctgaaagtcgattgcggcgggat	Protospacer
  ***** *****************

33. spacer 1.6|39689|28|NC_016790|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

gtgcgctcaaagtcgattgcggcggcca	CRISPR spacer
tgccgctcaatggcgattgcggcggccg	Protospacer
   ******* * **************.

34. spacer 1.6|39689|28|NC_016790|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039914 (Agrobacterium tumefaciens strain CFBP6625 plasmid pAtCFBP6625c, complete sequence) position: , mismatch: 6, identity: 0.786

gtgcgctcaaagtcgattgcggcggcca	CRISPR spacer
gcgcgcccaaggtcgattgcggcgggtt	Protospacer
*.****.***.************** .

35. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

36. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

37. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

38. spacer 1.8|39816|27|NC_016790|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggataaaccgtgttg	Protospacer
****.***********.******.  .

39. spacer 1.8|39816|27|NC_016790|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

40. spacer 1.8|39816|27|NC_016790|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

41. spacer 1.6|39689|28|NC_016790|CRISPRCasFinder,CRT,PILER-CR matches to NC_010906 (Neisseria lactamica isolate 410838 plasmid pNL18.1, complete sequence) position: , mismatch: 7, identity: 0.75

gtgcgctcaaagtcgattgcggcggcca	CRISPR spacer
agatgctcaaagtcgaatgcggcggcgg	Protospacer
. ..************ ********* .

42. spacer 1.6|39689|28|NC_016790|CRISPRCasFinder,CRT,PILER-CR matches to NC_010888 (Neisseria lactamica isolate 811778 plasmid pNL15, complete sequence) position: , mismatch: 7, identity: 0.75

gtgcgctcaaagtcgattgcggcggcca	CRISPR spacer
agatgctcaaagtcgaatgcggcggcgg	Protospacer
. ..************ ********* .

43. spacer 1.6|39689|28|NC_016790|CRISPRCasFinder,CRT,PILER-CR matches to NC_010855 (Neisseria lactamica isolate 102739 plasmid pNL11, complete sequence) position: , mismatch: 7, identity: 0.75

gtgcgctcaaagtcgattgcggcggcca	CRISPR spacer
agatgctcaaagtcgaatgcggcggcgg	Protospacer
. ..************ ********* .

44. spacer 1.6|39689|28|NC_016790|CRISPRCasFinder,CRT,PILER-CR matches to NC_010871 (Neisseria lactamica isolate 9225393 plasmid pNL7.1, complete sequence) position: , mismatch: 7, identity: 0.75

gtgcgctcaaagtcgattgcggcggcca	CRISPR spacer
agatgctcaaagtcgaatgcggcggcgg	Protospacer
. ..************ ********* .

45. spacer 1.6|39689|28|NC_016790|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009154 (Burkholderia pseudomallei strain TSV202 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.75

gtgcgctcaaagtcgattgcggcggcca	CRISPR spacer
acccgccgaaagtcgattgcggcggctt	Protospacer
.. ***. ******************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

620122 : 724101

Bacillus_phage(20.0%)

tRNA,transposase,protease,integrase

attL 723100:723119|attR 729109:729128

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004567125.1\|620122_620626_-\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
WP_010934497.1\|620671_621295_+	sigma-70 family RNA polymerase sigma factor	A0A076YQ50	Rhizobium_phage	1.7e-08	28.5
WP_072588051.1\|621291_621543_+	mycothiol system anti-sigma-R factor	NA	NA	NA	NA
WP_014309177.1\|621547_621892_-	DUF4288 domain-containing protein	NA	NA	NA	NA
WP_004567132.1\|622229_622490_-	WhiB family transcriptional regulator	A0A2P1N2X5	Mycobacterium_phage	2.0e-11	45.1
WP_014309178.1\|623121_623583_+	hypothetical protein	NA	NA	NA	NA
WP_014309179.1\|623576_624839_-	hypothetical protein	NA	NA	NA	NA
WP_014309180.1\|624835_626146_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.3e-42	30.0
WP_004567139.1\|626361_626589_+	DUF3107 domain-containing protein	NA	NA	NA	NA
WP_014309181.1\|626591_627470_+	DUF3152 domain-containing protein	NA	NA	NA	NA
WP_014309182.1\|627493_628351_+	TIGR02569 family protein	NA	NA	NA	NA
WP_014311312.1\|628354_631537_+	ATP-dependent helicase	NA	NA	NA	NA
WP_014310151.1\|631530_634761_+	ATP-dependent helicase	A7KV33	Bacillus_phage	5.1e-19	22.9
WP_004567149.1\|634805_635894_+	potassium channel protein	NA	NA	NA	NA
WP_014308089.1\|635925_636609_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_004567152.1\|636601_638653_+	ATP-dependent DNA helicase UvrD2	S5MMD7	Bacillus_phage	1.7e-44	27.5
WP_014311313.1\|638597_639491_-	hypothetical protein	NA	NA	NA	NA
WP_014311314.1\|639526_640048_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_014311315.1\|640044_641436_-\|protease	zinc-dependent metalloprotease	NA	NA	NA	NA
WP_014310154.1\|641516_642569_+	PDZ domain-containing protein	NA	NA	NA	NA
WP_014311316.1\|642580_643279_-	hypothetical protein	NA	NA	NA	NA
WP_014310156.1\|643329_643833_-	hypothetical protein	NA	NA	NA	NA
WP_014311317.1\|644005_646969_+	UPF0182 family protein	NA	NA	NA	NA
WP_010934516.1\|647452_648022_-	sodium:glutamate symporter	NA	NA	NA	NA
WP_010934518.1\|648551_649562_-\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_014311318.1\|649564_650521_-	DUF418 domain-containing protein	NA	NA	NA	NA
WP_014311319.1\|650776_650944_+	hypothetical protein	NA	NA	NA	NA
WP_010934521.1\|651199_652681_+	methylmalonyl-CoA carboxytransferase subunit 5S	NA	NA	NA	NA
WP_010934522.1\|652693_654250_+	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_003850577.1\|654263_654527_+	hypothetical protein	NA	NA	NA	NA
WP_003850583.1\|654551_654920_+	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_014306632.1\|655122_656214_+	hypothetical protein	NA	NA	NA	NA
WP_014308098.1\|656232_657021_-	histidinol-phosphatase	NA	NA	NA	NA
WP_014308099.1\|657077_657893_-	inositol monophosphatase family protein	NA	NA	NA	NA
WP_014311320.1\|658072_659182_+	peptide chain release factor 2	NA	NA	NA	NA
WP_014311321.1\|659178_660783_-	AbgT family transporter	NA	NA	NA	NA
WP_014303094.1\|660961_661651_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	9.1e-27	38.2
WP_003850598.1\|661667_662570_+	ABC transporter permease	NA	NA	NA	NA
WP_003850600.1\|662674_663166_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-36	52.2
WP_014308372.1\|665339_666689_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.2e-34	36.1
WP_050879494.1\|666734_669629_+	type 2 lantipeptide synthetase LanM	NA	NA	NA	NA
WP_014311325.1\|669616_671749_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	3.4e-32	26.0
WP_010934533.1\|671748_672627_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.6e-30	35.4
WP_010934534.1\|672626_673424_+	lantibiotic ABC transporter permease	NA	NA	NA	NA
WP_010934535.1\|673589_673856_-\|transposase	transposase	NA	NA	NA	NA
WP_013170013.1\|674890_675172_+\|transposase	transposase	NA	NA	NA	NA
WP_148265586.1\|675244_676048_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_010934538.1\|676270_676612_-	cupin domain-containing protein	NA	NA	NA	NA
WP_010934539.1\|676645_677449_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_014311327.1\|677570_677801_-\|transposase	transposase	NA	NA	NA	NA
WP_080574137.1\|679153_679516_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_014308109.1\|679745_679910_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_014311330.1\|679997_680234_-	hypothetical protein	NA	NA	NA	NA
WP_014309234.1\|686509_687718_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014308112.1\|688467_689196_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_111933930.1\|689243_689423_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_014308113.1\|689389_689788_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_014308114.1\|689792_690440_-	DUF3239 domain-containing protein	NA	NA	NA	NA
WP_014311332.1\|690444_692109_-	DEAD/DEAH box helicase	A0A1D8BJ75	Sulfolobus_islandicus_filamentous_virus	9.6e-14	23.3
WP_014311333.1\|692154_694473_-	helicase-associated domain-containing protein	NA	NA	NA	NA
WP_014301577.1\|694539_694728_+	hypothetical protein	NA	NA	NA	NA
WP_010934546.1\|694912_695536_-	DUF3235 domain-containing protein	A0A2D0ZMX2	Rhodococcus_phage	1.3e-27	59.0
WP_003850654.1\|696216_696606_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_014301578.1\|696713_697238_-	DUF2771 domain-containing protein	NA	NA	NA	NA
WP_014311334.1\|697224_698091_-	glutaminyl-peptide cyclotransferase	NA	NA	NA	NA
WP_010934549.1\|698130_698895_+	DUF3027 domain-containing protein	NA	NA	NA	NA
WP_014311335.1\|699068_700556_+	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	3.1e-40	30.8
WP_014311336.1\|700635_701532_+	RNA methyltransferase	NA	NA	NA	NA
WP_014311337.1\|701528_702425_-	hypothetical protein	NA	NA	NA	NA
WP_014309239.1\|702445_703495_-	DUF3071 domain-containing protein	NA	NA	NA	NA
WP_014309241.1\|703696_704827_-	phosphoserine transaminase	NA	NA	NA	NA
WP_003850673.1\|705515_706808_+	citrate synthase	NA	NA	NA	NA
WP_003850674.1\|706974_707334_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_014301581.1\|707420_708926_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha/beta	NA	NA	NA	NA
WP_014309242.1\|709018_709891_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.6e-52	39.8
WP_014309243.1\|709890_710667_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_014311338.1\|710977_712186_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014301583.1\|712714_713056_+	DUF485 domain-containing protein	NA	NA	NA	NA
WP_014301584.1\|713059_714712_+	cation acetate symporter	NA	NA	NA	NA
WP_044048985.1\|714920_715694_+	hypothetical protein	NA	NA	NA	NA
WP_014309246.1\|715686_716595_-	DUF1906 domain-containing protein	A0A2D1GEF2	Gordonia_phage	3.5e-26	37.1
WP_014309247.1\|716723_717923_-	cation:proton antiporter	NA	NA	NA	NA
WP_044026483.1\|718180_718633_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_014309248.1\|718644_719211_-	SocA family protein	NA	NA	NA	NA
WP_014309249.1\|719543_719819_+	hypothetical protein	NA	NA	NA	NA
WP_014309250.1\|720371_721310_-	tyrosine recombinase XerC	NA	NA	NA	NA
WP_014311340.1\|721421_722522_-	hypothetical protein	NA	NA	NA	NA
WP_014309252.1\|722709_723036_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
723100:723119	attL	NA	NA	NA	NA
WP_014309253.1\|723318_724101_+\|integrase	integrase	NA	NA	NA	NA
WP_014309253.1\|723318_724101_+\|integrase	integrase	NA	NA	NA	NA
729109:729128	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1769131 : 1784891

Agrobacterium_phage(40.0%)

tRNA,transposase,protease,integrase

attL 1760320:1760335|attR 1789448:1789463

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1760320:1760335	attL	NA	NA	NA	NA
WP_014308109.1\|1769131_1769296_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080574137.1\|1769526_1769889_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_014311327.1\|1771241_1771472_+\|transposase	transposase	NA	NA	NA	NA
WP_014309471.1\|1772627_1773041_-	DUF4233 domain-containing protein	NA	NA	NA	NA
WP_014308610.1\|1773037_1774534_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_014309472.1\|1774530_1777239_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	2.1e-135	37.4
WP_014308612.1\|1777333_1778314_-	malate dehydrogenase	NA	NA	NA	NA
WP_014303750.1\|1778796_1779549_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_010935337.1\|1779585_1780878_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.3e-131	54.2
WP_014309473.1\|1781024_1783550_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	1.6e-65	30.4
WP_003852475.1\|1783644_1784274_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.6e-38	44.0
WP_003852476.1\|1784291_1784891_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.3e-41	46.7
1789448:1789463	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2166021 : 2209606

Macacine_betaherpesvirus(28.57%)

holin,tRNA,transposase,integrase

attL 2155440:2155454|attR 2212377:2212391

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2155440:2155454	attL	NA	NA	NA	NA
WP_014304028.1\|2166021_2166801_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_014302497.1\|2166797_2167418_+	NYN domain-containing protein	NA	NA	NA	NA
WP_014311642.1\|2167432_2169673_+	MMPL family transporter	NA	NA	NA	NA
WP_014309664.1\|2169674_2170718_+	UPF0104 family protein	NA	NA	NA	NA
WP_014309665.1\|2170714_2171071_+	DUF3054 domain-containing protein	NA	NA	NA	NA
WP_004567314.1\|2171229_2171430_+	hypothetical protein	NA	NA	NA	NA
WP_014308849.1\|2171596_2171848_+\|transposase	transposase	NA	NA	NA	NA
WP_004567317.1\|2172262_2175262_-	VaFE repeat-containing surface-anchored protein	NA	NA	NA	NA
WP_014308850.1\|2175679_2176114_-	endo-beta-N-acetylglucosaminidase	NA	NA	NA	NA
WP_014308851.1\|2176266_2176683_-	endo-beta-N-acetylglucosaminidase F2	NA	NA	NA	NA
WP_014311644.1\|2176838_2178389_-	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_004567323.1\|2178400_2183161_-	acyltransferase domain-containing protein	NA	NA	NA	NA
WP_004567325.1\|2183259_2185074_-	AMP-binding protein	NA	NA	NA	NA
WP_004567333.1\|2185148_2186060_-	cutinase family protein	NA	NA	NA	NA
WP_004567335.1\|2186065_2186581_-	hypothetical protein	NA	NA	NA	NA
WP_014308854.1\|2186580_2188497_-	hypothetical protein	A0A2I6B2Q9	Macacine_betaherpesvirus	4.9e-38	37.6
WP_004567341.1\|2188857_2189874_-	esterase family protein	A0A2I6AZZ6	Macacine_betaherpesvirus	5.4e-36	35.1
WP_004567343.1\|2190040_2191729_-	arabinofuranosyl transferase C	NA	NA	NA	NA
WP_014309669.1\|2191737_2192715_-	decaprenyl-phosphate phosphoribosyltransferase	NA	NA	NA	NA
WP_004567346.1\|2192711_2193206_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_014309670.1\|2193205_2195191_-	glycosyltransferase	NA	NA	NA	NA
WP_014311645.1\|2195275_2195761_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_014311646.1\|2195831_2197409_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_014311647.1\|2197475_2199701_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	2.5e-17	25.9
WP_014311648.1\|2199972_2201766_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.6e-54	28.1
WP_014302517.1\|2201951_2203115_-	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	1.3e-94	46.1
WP_014308865.1\|2203922_2204765_-	type IV toxin-antitoxin system AbiEi family antitoxin	NA	NA	NA	NA
WP_014308867.1\|2205009_2205285_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_014308868.1\|2205755_2207576_+	N-acetylmuramoyl-L-alanine amidase	A0A159B6I5	Gordonia_phage	8.9e-05	34.8
WP_004567362.1\|2207815_2208049_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_014308869.1\|2208358_2208481_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_080564351.1\|2208863_2209043_+	hypothetical protein	NA	NA	NA	NA
WP_014308870.1\|2209008_2209350_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q8W6R2	Burkholderia_virus	8.8e-07	42.0
WP_158307782.1\|2209330_2209606_+\|transposase	transposase	NA	NA	NA	NA
2212377:2212391	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016790

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection