CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_016789	Corynebacterium diphtheriae PW8, complete sequence	2 crisprs	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,cas3,WYL,cas4,DinG	0	5	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_016789_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016789_1

31841-33019

TypeI-E

I-E:NA

Consensus_repeat	Method
GTTTTCCCCGCACTAGCAGGGATGAGCC	PILER-CR
GTTTTCCCCGCACTAGCAGGGATGAGCC	CRISPRCasFinder
GTTTTCCCCGCACTAGCNGGGATGAGCC	CRT

19 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2

The CRISPR arrays of NC_016789_1

>merge|NC_016789|1|31841-33019|PILER-CR,CRISPRCasFinder,CRT
GTTTTCCCCGCACTAGCAGGGATGAGCCCGCCCCGGTCATCCGTAAGCACCTCAAAGACGCGTTTTCCCCGCACTAGCAGGGATGAGCCCTGAAATCTGAGGTTGCGGCGCTGAAATCGCAGGTTTTCCCCGCACTAGCAGGGATGAGCCGCGATTGAAGCTGAGCGGCGGTGCCGCCCGCGTGTTTTCCCCGCACTAGCAGGGATGAGCCTGCCAAATTCCAACAAAAATATACCTGGATCGCGTTTTCCCCGCACTAGCAGGGATGAGCCCCGGAGTCCTTTCCCCATACGACCTCGGCGGCTGTTTTCCCCGCACTAGCAGGGATGAGCCTAAATTGGGTGCGGTCGAGCATTTTTCCGTGCGTTTTCCCCGCACTAGCAGGGATGAGCCTTTCGCTGGGATCGATTCGGCGACCTTCCACGAGTTTTCCCCGCACTAGCAGGGATGAGCCCCCCGGCATCATCGACAAAGATACTGGCCGCGAGTTTTCCCCGCACTAGCAGGGATGAGCCCCGCTAAAGCCGATCTCCGCGACTGGGCTATGAGTTTTCCCCGCACTAGCGGGGATGAGCCCGTCGAGCCGACCAATTCGCCGCCCAAATACTCGTTTTCCCCGCACTAGCGGGGATGAGCCCTCTGGTATAAAACCAGCCCCAGTTAGTGCAGTGTTTTCCCCGCACTAGCGGGGATGAGCCGTTCTGGCATTCGACGATACAACATTGTGCACAGTTTTCCCCGCACTAGCGGGGATGAGCCGTTCTGGCATTCGACGATACAACATTGTGCACAGTTTTCCCCGCACTAGCGGGGAGGAGCCCTACGAGAGCATTAAGGGGGGCTATTTCTTTACGTTTTCCCCGCACTAGCGGGGATGAGCCCGAACTCGAGGACATGGAGGCCACGCGATGAAAGTTTTCCCCGCACTAGCGGGGATGAGCCCGCCGGTAGGGTATGCGACCGCCGCGCAGGTCAGTTTTCCCCGCACTAGCGGGGATGAGCCGTGGGGTTGATTTGATTATACCGCATGGTGCGTGTTTTCCCCGCACTAGCGGGGATGAGCCGTCATAATCAGCACTGTCAATCCTCATGTATTGGTTTTCCCCGCGTCAGCGGGGATGAGCCCAGGGACTTTGAGAACTGGACCGCCGTGATTCCCTGCACTAGCAGGGTGGATGA

>NC_016789|1|1|31841-32904|PILER-CR
GTTTTCCCCGCACTAGCAGGGATGAGCC	CGCCCCGGTCATCCGTAAGCACCTCAAAGACGC
GTTTTCCCCGCACTAGCAGGGATGAGCC	CTGAAATCTGAGGTTGCGGCGCTGAAATCGCAG
GTTTTCCCCGCACTAGCAGGGATGAGCC	GCGATTGAAGCTGAGCGGCGGTGCCGCCCGCGT
GTTTTCCCCGCACTAGCAGGGATGAGCC	TGCCAAATTCCAACAAAAATATACCTGGATCGC
GTTTTCCCCGCACTAGCAGGGATGAGCC	CCGGAGTCCTTTCCCCATACGACCTCGGCGGCT
GTTTTCCCCGCACTAGCAGGGATGAGCC	TAAATTGGGTGCGGTCGAGCATTTTTCCGTGC
GTTTTCCCCGCACTAGCAGGGATGAGCC	TTTCGCTGGGATCGATTCGGCGACCTTCCACGA
GTTTTCCCCGCACTAGCAGGGATGAGCC	CCCCGGCATCATCGACAAAGATACTGGCCGCGA
GTTTTCCCCGCACTAGCAGGGATGAGCC	CCGCTAAAGCCGATCTCCGCGACTGGGCTATGA
GTTTTCCCCGCACTAGCGGGGATGAGCC	CGTCGAGCCGACCAATTCGCCGCCCAAATACTC
GTTTTCCCCGCACTAGCGGGGATGAGCC	CTCTGGTATAAAACCAGCCCCAGTTAGTGCAGT
GTTTTCCCCGCACTAGCGGGGATGAGCC	GTTCTGGCATTCGACGATACAACATTGTGCACA
GTTTTCCCCGCACTAGCGGGGATGAGCC	GTTCTGGCATTCGACGATACAACATTGTGCACA
GTTTTCCCCGCACTAGCGGGGAGGAGCC	CTACGAGAGCATTAAGGGGGGCTATTTCTTTAC
GTTTTCCCCGCACTAGCGGGGATGAGCC	CGAACTCGAGGACATGGAGGCCACGCGATGAAA
GTTTTCCCCGCACTAGCGGGGATGAGCC	CGCCGGTAGGGTATGCGACCGCCGCGCAGGTCA
GTTTTCCCCGCACTAGCGGGGATGAGCC	GTGGGGTTGATTTGATTATACCGCATGGTGCGT
GTTTTCCCCGCACTAGCGGGGATGAGCC

>NC_016789|1|1|31841-33019|CRISPRCasFinder
GTTTTCCCCGCACTAGCAGGGATGAGCC	CGCCCCGGTCATCCGTAAGCACCTCAAAGACGC
GTTTTCCCCGCACTAGCAGGGATGAGCC	CTGAAATCTGAGGTTGCGGCGCTGAAATCGCAG
GTTTTCCCCGCACTAGCAGGGATGAGCC	GCGATTGAAGCTGAGCGGCGGTGCCGCCCGCGT
GTTTTCCCCGCACTAGCAGGGATGAGCC	TGCCAAATTCCAACAAAAATATACCTGGATCGC
GTTTTCCCCGCACTAGCAGGGATGAGCC	CCGGAGTCCTTTCCCCATACGACCTCGGCGGCT
GTTTTCCCCGCACTAGCAGGGATGAGCC	TAAATTGGGTGCGGTCGAGCATTTTTCCGTGC
GTTTTCCCCGCACTAGCAGGGATGAGCC	TTTCGCTGGGATCGATTCGGCGACCTTCCACGA
GTTTTCCCCGCACTAGCAGGGATGAGCC	CCCCGGCATCATCGACAAAGATACTGGCCGCGA
GTTTTCCCCGCACTAGCAGGGATGAGCC	CCGCTAAAGCCGATCTCCGCGACTGGGCTATGA
GTTTTCCCCGCACTAGCGGGGATGAGCC	CGTCGAGCCGACCAATTCGCCGCCCAAATACTC
GTTTTCCCCGCACTAGCGGGGATGAGCC	CTCTGGTATAAAACCAGCCCCAGTTAGTGCAGT
GTTTTCCCCGCACTAGCGGGGATGAGCC	GTTCTGGCATTCGACGATACAACATTGTGCACA
GTTTTCCCCGCACTAGCGGGGATGAGCC	GTTCTGGCATTCGACGATACAACATTGTGCACA
GTTTTCCCCGCACTAGCGGGGAGGAGCC	CTACGAGAGCATTAAGGGGGGCTATTTCTTTAC
GTTTTCCCCGCACTAGCGGGGATGAGCC	CGAACTCGAGGACATGGAGGCCACGCGATGAAA
GTTTTCCCCGCACTAGCGGGGATGAGCC	CGCCGGTAGGGTATGCGACCGCCGCGCAGGTCA
GTTTTCCCCGCACTAGCGGGGATGAGCC	GTGGGGTTGATTTGATTATACCGCATGGTGCGT
GTTTTCCCCGCACTAGCGGGGATGAGCC	GTCATAATCAGCACTGTCAATCCTCATGTATTG
GTTTTCCCCGCGTCAGCGGGGATGAGCC	CAGGGACTTTGAGAACTGGACCGCCG
TGATTCCCTGCACTAGCAGGGTGGATGA

>NC_016789|1|1|31841-32965|CRT
GTTTTCCCCGCACTAGCAGGGATGAGCC	CGCCCCGGTCATCCGTAAGCACCTCAAAGACGC
GTTTTCCCCGCACTAGCAGGGATGAGCC	CTGAAATCTGAGGTTGCGGCGCTGAAATCGCAG
GTTTTCCCCGCACTAGCAGGGATGAGCC	GCGATTGAAGCTGAGCGGCGGTGCCGCCCGCGT
GTTTTCCCCGCACTAGCAGGGATGAGCC	TGCCAAATTCCAACAAAAATATACCTGGATCGC
GTTTTCCCCGCACTAGCAGGGATGAGCC	CCGGAGTCCTTTCCCCATACGACCTCGGCGGCT
GTTTTCCCCGCACTAGCAGGGATGAGCC	TAAATTGGGTGCGGTCGAGCATTTTTCCGTGC
GTTTTCCCCGCACTAGCAGGGATGAGCC	TTTCGCTGGGATCGATTCGGCGACCTTCCACGA
GTTTTCCCCGCACTAGCAGGGATGAGCC	CCCCGGCATCATCGACAAAGATACTGGCCGCGA
GTTTTCCCCGCACTAGCAGGGATGAGCC	CCGCTAAAGCCGATCTCCGCGACTGGGCTATGA
GTTTTCCCCGCACTAGCGGGGATGAGCC	CGTCGAGCCGACCAATTCGCCGCCCAAATACTC
GTTTTCCCCGCACTAGCGGGGATGAGCC	CTCTGGTATAAAACCAGCCCCAGTTAGTGCAGT
GTTTTCCCCGCACTAGCGGGGATGAGCC	GTTCTGGCATTCGACGATACAACATTGTGCACA
GTTTTCCCCGCACTAGCGGGGATGAGCC	GTTCTGGCATTCGACGATACAACATTGTGCACA
GTTTTCCCCGCACTAGCGGGGAGGAGCC	CTACGAGAGCATTAAGGGGGGCTATTTCTTTAC
GTTTTCCCCGCACTAGCGGGGATGAGCC	CGAACTCGAGGACATGGAGGCCACGCGATGAAA
GTTTTCCCCGCACTAGCGGGGATGAGCC	CGCCGGTAGGGTATGCGACCGCCGCGCAGGTCA
GTTTTCCCCGCACTAGCGGGGATGAGCC	GTGGGGTTGATTTGATTATACCGCATGGTGCGT
GTTTTCCCCGCACTAGCGGGGATGAGCC	GTCATAATCAGCACTGTCAATCCTCATGTATTG
GTTTTCCCCGCGTCAGCGGGGATGAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016789.1\|WP_014309769.1\|41724_43239_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_016789.1\|WP_014302665.1\|36648_37353_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|378243
NC_016789.1\|WP_014309768.1\|39706_41728_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	unknown	unknown	gnl\|CDD\|270916
NC_016789.1\|WP_003849883.1\|39320_39590_-\|cell-division-protein-CrgA	unknown	unknown	gnl\|CDD\|178907
NC_016789.1\|WP_014302668.1\|38965_39313_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NC_016789.1\|WP_014307724.1\|27956_28211_+\|hypothetical-protein	unknown	unknown	unknown
NC_016789.1\|WP_014309762.1\|27114_27909_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|237797
NC_016789.1\|WP_014309764.1\|28802_31604_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_016789.1\|WP_014302658.1\|25322_26108_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NC_016789.1\|WP_014309765.1\|33192_34866_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NC_016789.1\|WP_014302666.1\|37354_38020_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NC_016789.1\|WP_041626750.1\|23383_24052_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NC_016789.1\|WP_014309767.1\|38023_38959_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_016789.1\|WP_014302657.1\|25120_25321_+\|sulfur-carrier-protein-ThiS	unknown	unknown	gnl\|CDD\|273754
NC_016789.1\|WP_014309766.1\|34869_35496_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NC_016789.1\|WP_014306234.1\|35510_36644_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_016789.1\|WP_014302656.1\|24048_25137_+\|glycine-oxidase-ThiO	unknown	unknown	gnl\|CDD\|274092
NC_016789.1\|WP_014309760.1\|21600_23400_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NC_016789.1\|WP_014302659.1\|26107_27118_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|235528
NC_016789.1\|WP_010933959.1\|19908_20526_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759

Protein	Function_ID	Function_description	E-value
NC_016789.1\|WP_014309769.1\|41724_43239_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.38985e-107
NC_016789.1\|WP_014302665.1\|36648_37353_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|378243	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum.	8.43322e-41
NC_016789.1\|WP_014309768.1\|39706_41728_-\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.41994e-122
NC_016789.1\|WP_003849883.1\|39320_39590_-\|cell-division-protein-CrgA	gnl\|CDD\|178907	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed.	2.52021e-46
NC_016789.1\|WP_014302668.1\|38965_39313_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	3.33539e-41
NC_016789.1\|WP_014302657.1\|25120_25321_+\|sulfur-carrier-protein-ThiS	gnl\|CDD\|273754	TIGR01683, thiamine_biosynthesis_protein_ThiS, thiamine biosynthesis protein ThiS. This model represents ThiS, a small, ubiquitin-like thiamine biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	8.21875e-20
NC_016789.1\|WP_014309762.1\|27114_27909_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|237797	PRK14713, PRK14713, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	5.1376e-108
NC_016789.1\|WP_014309764.1\|28802_31604_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.99775e-92
NC_016789.1\|WP_014302658.1\|25322_26108_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	1.32018e-147
NC_016789.1\|WP_014302666.1\|37354_38020_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.54139e-78
NC_016789.1\|WP_041626750.1\|23383_24052_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	3.69237e-63
NC_016789.1\|WP_014309767.1\|38023_38959_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	9.65271e-127
NC_016789.1\|WP_014309765.1\|33192_34866_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	1.42012e-108
NC_016789.1\|WP_014309766.1\|34869_35496_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.29934e-31
NC_016789.1\|WP_014306234.1\|35510_36644_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	9.06672e-159
NC_016789.1\|WP_014302656.1\|24048_25137_+\|glycine-oxidase-ThiO	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	5.08136e-128
NC_016789.1\|WP_014309760.1\|21600_23400_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NC_016789.1\|WP_014302659.1\|26107_27118_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|235528	PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated.	0
NC_016789.1\|WP_010933959.1\|19908_20526_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	1.3912e-26

>NC_016789.1|WP_014309764.1|28802_31604_+|CRISPR-associated-helicase/endonuclease-Cas3
MSVVDQADQWRRARSVQSYSLWAKSGSEDLYLRLPQHLIDAACVAEWLWNNWVSDSLKSTLSAAWRLPAEEVGRLYTFYAGTHDVGKATISFQRLVEKTSHGNYLLGPVREAGLSLQWTLNEGEGKKFPHGMASALIIAAWLEKHDIDPSSAARLSFIADAHHGFASDEELYRSHEDTLDYYPPEWLVVHAEILDSMAEITGIGETLEELADQSTPSAPAMQIMTGLVIMADWIASDEKAFPYVCDSSQHDRVVEGMSHVNLPPAWVPTDVPDNVETLFRDTFTWPDSYQVRPVQRAAVAVARAVQDPTLIIIEAPTGEGKTEAGLATSHILGQKTGAQGIFFAAPTMSTANGLFERTKNWAQCTSSRGEVASLYLAHSKNKLSRPFQSLRFTSIGEDDHLEKHGSVVASQWLSGRYRGILSDFVVGTVDQVLMMALQVRFSMLRHVGLAGKIVIIDEVHAYDAYMSQYLYLTLQWLAKYGVSVILMSATLPPQQRARLVNAYASQVCKKADASALNSDAYPLITVVNKKGISVTEVPQENSDTTIKIRRIDDSLPALGGMFSDLLVGGGIALVICNTIRRAQQAYDFLKEIFPDEVELHHAAFIATQRSEKEDALRESLGPHASRGEDRPWRRIVVATQVAEQSLDIDADVLVTDIAPIDLIIQRAGRLHRHERPHSDRPEILGQPQIFIRGINNEEISGEVPEFDGGAAAIYGEKILYATVAYLPDEFHRPSDVPKLVKNVYSDTPCIPENWKEQWEQACVKAKENYEKSVRKAQTFSFPQPHMARTLRDLFKQQHSNSVDKNEESGSAQVRDAEFSIEVVALLKTEYGYHPFGRKEEIENGRELTWKETEALAGNTVRLPTRMTRRDSDFNAVIDSLEAQTPPEWQRSGLIKGQVALLFDERGEARVGRFLVRYTNERGLEVEVCPKEDA
>NC_016789.1|WP_014307724.1|27956_28211_+|hypothetical-protein
MISSLGVRAWHKILGSLALSVQNQGPTVQPNGNAIVDTICRTAELGVTITGAEPVEPHVRAAKKTMNKRRKDILANIRHKINAP
>NC_016789.1|WP_014309762.1|27114_27909_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MTPHILTIAGSDPSGGAGIQADLKSIMAAGGYGMAAITALTAQNTCGVTAIHTPPTEFLSEQLRAISDDITIHAIKIGMIGSSDAATATATWLDQLPHTPIVVLDPVMVATSGSVLGQRHYFEPLLHHATVITPNLPELAVLTNNHDPEQTEHAAHSLAEQYDCAVLLKGGHRHGTDDLGNTWITASGPQFHAPSPRIHTTNTHGTGCSLSSALATRLAIEPPKPALHWATTWLNGAIAHGSDLNVGHGNGPVDHSYRLGGILS
>NC_016789.1|WP_014302659.1|26107_27118_+|ThiF-family-adenylyltransferase
MLDELERQRVARQLRLPGFGIEQQERLNKGRVLVIGAGGLGSPALQSLVAAGVGSIRLVDNDTVDVSNIQRQILFGVGDVGRSKVHVAAERLRAIQPGIRIDAHTERLTAHNAHELAEGCDVILDGSDTFATKFLCGDLAEITGIPLVWGSVLQFEGHMGVFTREVGLRDLFPEAPTQGLNCADAGVLGATTAVIANLMATETIKILAGIGTVQPGSITTYNALTSTFRTYTVGRDPLRPAARTLHTWTLPNEYELIDVREPHEIEHTPSGAHITLPQSMWDDTTAIQHALDNITTDNVVVVCASGIRSAAFIEQFAHLNPHLTFHNVPSGINELP
>NC_016789.1|WP_014302658.1|25322_26108_+|thiazole-synthase
MLTIADRSFQSHLIMGTGGASSFDTLEKSLIASGTELTTVAMRRHAAHTGAHGESVFELMQRLNITPLPNTAGCRTARDAILTAQLAREALDTSWIKVEVIADDTTLLPDVLELIDATETLTNDGFTVLAYTSDDPVVAQRLEDAGAAAVMPLGSPIGTGLGILNPHNIELICSRATVPVLLDAGIGTASDATLAMELGCAGVLLASAINRCINPITMATAMKHAVEAGRLAREAGRIPRREHAVASSSFEGLASWADEVL
>NC_016789.1|WP_014302657.1|25120_25321_+|sulfur-carrier-protein-ThiS
MDIYINDTLTTIESPQLTEIISNHCNGIRPGIAVAINQRVIPRSQWDTTTVTAGDHLDILTAVQGG
>NC_016789.1|WP_014302656.1|24048_25137_+|glycine-oxidase-ThiO
MKIAVVGGGIVGLSTAFELSTRGYNVHVFDPNPASGASHFAGGMLAPAAEVQFQQDPLFPLMKRAGKLWPDMVRWVAQHTNLPTGYRTEGTLVVAADRADAEHLKQLRATQEAAGMDVRPITTRQARGLEPALGPRLSAAVHIPNDTQVAPRVFLTALLDALDDCGVEVTKEKITDLEPLYQQFDVVVLAAGLGAQHLSPIPLALRPVRGDILRVQTEPGAVNMVVRGWVNDRPIYIIPRANGEIAIGATSREDERDLPSVEGIYDLLRDAIRVVPGIVDSSLIEANVGVRPGTPDDLPYLGWASDRLIISTGYFRHGILLSSLGAHVTACLIDGTDPGIDLTACAPDRHHNERGTTHGHLH
>NC_016789.1|WP_041626750.1|23383_24052_+|thiamine-phosphate-synthase
MLPTPRWGRDFDPRCYFVTGTGSVEHIVDVARQAARAGAGLIQVRSKPIAARDLYILGREVARAVAEANPRTRVLIDDRVDVALALMNNGEHIHGVHVGQDDLPVRHVRALLGDNAIIGLTTGTLELVRASRQVAEAIDYIGAGPFRPTPTKDSGRAPVGLAGYPPLVAESLVPVVAIGDVRPEDAADLAATGVAGVAIVRALMNSQDVATDVKLVLKGFAQ
>NC_016789.1|WP_014309760.1|21600_23400_+|phosphomethylpyrimidine-synthase-ThiC
MSAASANSVTNPSAWENSEIHPKHSYSPIVSGDLEVPETEIQLDDSPTGPNDPVRIYRTRGPECDPTVGLKPLRAQWIDNREDTEEYAGRERNLADDGRSAQRRGAASLEWKGMKPTPRRAKQGKRVTQMHYARQGIITKEMEFVALREHMDPEFVRSEIAHGRAIIPNNINHPESEPMIIGRKFLTKINANIGNSAVTSSIEEEVSKLRWATRWGADTVMDLSTGDDIHTTREWIIRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTVIEQCEQGVDYMTIHAGVLLAYIPLTTKRVTGIVSRGGSIMAGWCLAHHKESFLYEHFDELCEIFAQYDVAFSLGDGLRPGSVADANDAAQFAELKTIGELARRAWEYDVQVMIEGPGHVPLNMVQENNELEQKWAHDAPFYTLGPLVTDIAPGYDHITSAIGAAHIAMGGTAMLCYVTPKEHLGLPNRDDVKTGVITYKLAAHAADVAKGHPGARAWDDAMSKARFEFRWHDQFALSLDPDTAIAYHDETLPAEPAKTAHFCSMCGPKFCSMRISQDIRDMFADKIADLGIPQVGGDAEAGMAAKSEEFVAQGSQLYSEVRDNAAHA
>NC_016789.1|WP_010933959.1|19908_20526_+|rhomboid-family-intramembrane-serine-protease
MVHTEVMNALKRAYGQAPATAVLCALTILIYLLTVVESRSIEHNLSDSWIADHWTLYGPYSHGLGWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASATVLLMDPLAPTVGASGAVYGLMAIFVAMSYRLRRDLTAPLILIAVNVGYSLLMDGVSLWGHLGGLLTGCVLGIVLVIAQTTRGNKRG
>NC_016789.1|WP_014309765.1|33192_34866_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MASLLEIRWILALDTQGNQISVGIRDIFAGEVQVAYIQGESPAQDYAVMRLLLAIFWRAHSMDIDMDVEPFDFLEWFNKMRRRLARKGKDQVVLDYLDRYADRFELFDVKAPFMQVAGLHVASGEYKHITTIIPEAQGEYFSMRGGKERDSVSIEEAARWLVYVHAFDYSGIKSGAVGDSRVKGGRGYPIGTGWTGMTGGTLVKGEDLLDTLLLNTTLETLNDPEDRPVWERTAYGPGERAVVGENSQPQGPADLATWQSRRIRLIPEGDRVVGVIVCNGDKIPDAGANVLDDPMTPYRFSTNKSKKDHDVYYPRPYDVERTMWKALDALVVAETDGGFSAKEKAPKRPKNLASLAELAVQKANVPAVLNVDLVSVEYGPQASSVATTYASRMSMPVVLLLTEAKHLRGKVREIARATTQSAVALGQFSGNLLDAAGGEYAFQPAITDRVLAELEPRFNDWLERLRDISPEQAIQDNESLTDLEKAWQHTARSIIDQHARILLRGAGPKALAGRIQYRDADDHKGRVVSAAGYYRMLQRKLDEVLPLTVRKQEKEGE
>NC_016789.1|WP_014309766.1|34869_35496_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MAENKDALRAAVGATCHRLQEAYLGDRNSARHHSARATLAELRHGATVDIRKNPLGLEKVLFAMAGDFSDRLVGHGDNPSPSEEAAFVALTLFGVHMQSATSPVHIPQVSFASACGRLHSLGTSDSIKPRVDAMLLASQEQARLVHIRSLVTLLRANNIGFDYGLLARDLRALNDPKKRAGIQLRWGRDFAIGHFRNSNSTTNSTQTA
>NC_016789.1|WP_014306234.1|35510_36644_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTLVVDIHALQTVPPSLINRDDMGAPKTAIFGGVPRQRVSSQSWKRAVRRFFEDEIDKSTVGLRSRKLPENIVSRAIALGSDLTEDQILDGVRQLFKAAKISLVEPKAPKKGEELPEDAEKYPTTGYLLFLSPYQLDRAAQAVVDKNGEKFTKAEAEDILDTKHSVDMALFGRMLADAPAYNIDASVQVAHAISVHESQPEFDYFTAVDDVVEDAEETGAGMIGTTQMMSSTLYRFATVNVDGLVKNLEDTELAHEAVRMFIRAFAESMPTGKQNSFANNTLPELMYVAVRDTRSVSLVNAFEEPVAAADGSRRQAAATALAREERDIEEAYGMKPLASFVVALGELGTDFEELAEKVTLTELGEAVIRTLAAQEAK
>NC_016789.1|WP_014302665.1|36648_37353_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSYSLLLLLKGPLQSWGDESRYNTRATGNTPSKSGVIGLLAAAQGRQRTDSIEDLVALDFAVRVDQSGTLLRDYQTAQPWQKAPKANASLVTRHFLSDAAFVAAIGSEDKELLEGLQGHLRQPTYPLFLGRRSCPAPVNLDLGIVDKPVVEALMAHDTWHATSAHQQERSRDVELPIYRDGKPGEHGVPRQDVPLSFAQEHRRYGWRTVVYAGSKSIVNEKGTANDPFFEAVIS
>NC_016789.1|WP_014302666.1|37354_38020_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MATFTKVLINPARRQGRKYLTNPHMLHAAVMHGFPPDCDTSTERILWRLDERGHEHILYVVGPEKPTIDHIVEEAGWDVRPPQSADYDRLLSQLTKGQKWNFELVANPTHTIPVQGGKRGKVVAHSTAAKQLEWLHRKAESMGVSFGTLENSSAQVVGKKTLDFHRSRPNGERGNRVHLVTARFSGQLEVVDADKLRATLIGGVGRAKGYGCGLLTLARGQ
>NC_016789.1|WP_014309767.1|38023_38959_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSATPSQSPLDRLLLPRMESRLSFLYVERAVINRDGNALTIKDQRGIAHVPATQLAVILLGPGTKVTYAAMALLGDAGASVVWVGEKGVRYYAHGRPPAKTSRFAEAHARLWSNQRSRLRCARRMYDMRFPGEEISQLSLAQLRGREGARMKKIYAAEAQRTGVVWTRRNYDPQDFESGDPINRALTEGSAALYGIAHAVIVGLGFIPSLGIVHTGTDRAFVYDIADLYKAEISIPAAFEAVAAIPSGDDLNVRARIRDKVVSTRLMQRMVHDLQDLMEIPEEDAYSDVDLMLWSELEVIAAGVNWSTERF
>NC_016789.1|WP_014302668.1|38965_39313_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVLVVSAVPAGLRGDLTKWLMEISPGVFVGNPSARIRDLLWERTTELSKDGRALLIYSSNNEQSMEYRTHRHEWEPTDFDGLTLMMRPDNTKPSSYQRRTGWSIARNVRKNRGN
>NC_016789.1|WP_003849883.1|39320_39590_-|cell-division-protein-CrgA
MPKSKINHSSTAYTAGSTANRTPVKINSTGTPLWYKIIMFGLILAGLLWLIVNYLAGQDISFMTELGPWNYGIGFGLFIIGLLMTMGWR
>NC_016789.1|WP_014309768.1|39706_41728_-|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase
MTDIVLADRYRLGDVIGTGGMSEVYEATDVLLGRKVAVKMLRADLARDVNFRERFRREAQNSGKLNHPAIVAVYDTGETPRAGLNTPYIVMELVNGRTLRDIVREDGPLTPSQAAHTLIPVCHALQVSHDAGIIHRDIKPANVMITNTGAVKIMDFGIARALDDATSAMTQTSAVIGTAQYLSPEQARGKLADARSDVYALGCVLYETLTGKPPFEGETPFAVAYQHVQEDPVKPSEYIADLSPTAAINVDAVVLTAMAKHPGDRYQTAQEMCADLERLERNAVTDAARHYVTPTSFATQDPASTTVVPVTQVTELDHAEAGAGIGAGVVPAGAVAGSAAVAGSGGAHAAPRSSNRGLRILAAILAVLVLAVGAGFAIDYFGGGPFSQRSTVTIPKLQNSTQQDAVNQLEKLGLQVNVIEEPNPDIPRGKVIRTNPTDGSNVQRNSTVRLTISSGKEITEVPDLSGKNTADAVKILEAAGLLLDPTVREDSSDTVPKGEIIEVSPAAGSQVSRGSKVSITVSTGVETVRVPVITGMKWDQAEGNLTSLGFKPEVVRVDSVEPAGTVVAVPDEGAEVPKGSSVTVQISNGAMFTVPEITRQTIGDAVRILHDAGWKGNASRLIQAAKVPTVAVTDQNLIASQLPTPGTALRKDAPIEIRLYEFNLAALVPPAQH
>NC_016789.1|WP_014309769.1|41724_43239_-|serine/threonine-protein-kinase
MTQSQSPDPALQALVGSDYALQWVVGNGGMSTVWLADDLRNQREVAIKVLRPEFSDNEEFLSRFRNEALASEHIDSDNVVRTYDYREVTDDMGRTLCFIVMEYVRGESLADMLARKGRLEEDLALDVLEQAAHGLSIIHRMGMVHRDIKPGNLLITQNGQVKITDFGIAKAAAAVPLTRTGMVVGTAQYVSPEQAQGRDVTAATDVYSLGVVGYEMLVGQRPFTGDSSVSVAIAHINQAPPAMPTSVSAPARELIGIALRKDPAHRYADGNELALAVSATRMGQRPPQPKSAPLQHIAPQPAPTESTYALGATAQPTTVIPATGQVPAAPAAAAYPASTVIPADTPRQEPEKQSSGWGAGIVVGALAALLLGTAAWAASQGMFDDLFDKTPQSSESSVPPPPVTATVTETPTPQITTVVPEPLPTSSPEPTPSETKRTPDESHPSSDHQLPSVRPSHNGRPSSQAPHAPHAPTQDADQPAESPAPDTLDSLIENLNKLNQGGAQ

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Crispr_ID: NC_016789_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_016789_2

2108210-2108305

Orphan

Consensus_repeat	Method
AAGCCCAATGGCCCAAAGGATCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_016789_2

>merge|NC_016789|2|2108210-2108305|CRISPRCasFinder
AAGCCCAATGGCCCAAAGGATCCCAATGGCCCGAAGAAGCCCGGTGACTCGGATCAGTCCGGTGGCTCGGAGAAGCCCAATGGCCCAAAGGATCCC

>NC_016789|2|2|2108210-2108305|CRISPRCasFinder
AAGCCCAATGGCCCAAAGGATCCC	AATGGCCCGAAGAAGCCCGGTGACTCGGATCAGTCCGGTGGCTCGGAG
AAGCCCAATGGCCCAAAGGATCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_016789.1\|WP_014310869.1\|2124654_2125734_-\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|237408
NC_016789.1\|WP_014310834.1\|2087123_2087585_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NC_016789.1\|WP_014310845.1\|2104768_2106409_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NC_016789.1\|WP_014310840.1\|2099824_2100637_+\|hypothetical-protein	unknown	unknown	unknown
NC_016789.1\|WP_014310855.1\|2112218_2113301_-\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NC_016789.1\|WP_014310870.1\|2125730_2126279_-\|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379163
NC_016789.1\|WP_014310833.1\|2086752_2087049_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NC_016789.1\|WP_014310856.1\|2113602_2116281_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|223256
NC_016789.1\|WP_014310849.1\|2108769_2109015_-\|hypothetical-protein	unknown	unknown	unknown
NC_016789.1\|WP_041627025.1\|2123551_2124712_+\|DUF2029-domain-containing-protein	unknown	unknown	gnl\|CDD\|172015
NC_016789.1\|WP_014303886.1\|2104001_2104157_-\|hypothetical-protein	unknown	unknown	unknown
NC_016789.1\|WP_168800656.1\|2121726_2121864_+\|hypothetical-protein	unknown	unknown	unknown
NC_016789.1\|WP_041627015.1\|2096525_2097155_-\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|380024
NC_016789.1\|WP_014310838.1\|2097144_2098014_-\|class-C-sortase	unknown	unknown	gnl\|CDD\|320676
NC_016789.1\|WP_041627023.1\|2121350_2121686_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378012
NC_016789.1\|WP_014310867.1\|2121968_2123342_+\|dipeptidase	unknown	unknown	gnl\|CDD\|236127
NC_016789.1\|WP_014310839.1\|2098014_2099592_-\|SpaH/EbpB-family-LPXTG-anchored-major-pilin	unknown	unknown	gnl\|CDD\|275067
NC_016789.1\|WP_014310844.1\|2102895_2103732_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238861
NC_016789.1\|WP_010935518.1\|2116390_2116927_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
NC_016789.1\|WP_014310843.1\|2101590_2102487_-\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852

Protein	Function_ID	Function_description	E-value
NC_016789.1\|WP_014310869.1\|2124654_2125734_-\|glutamate--cysteine-ligase	gnl\|CDD\|237408	PRK13517, PRK13517, glutamate--cysteine ligase.	0
NC_016789.1\|WP_014310834.1\|2087123_2087585_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	1.44371e-18
NC_016789.1\|WP_014310845.1\|2104768_2106409_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NC_016789.1\|WP_014310855.1\|2112218_2113301_-\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	3.82466e-149
NC_016789.1\|WP_014310844.1\|2102895_2103732_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238861	cd01823, SEST_like, SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.	6.04316e-29
NC_016789.1\|WP_041627015.1\|2096525_2097155_-\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|380024	pfam17802, SpaA, Prealbumin-like fold domain. This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae. Some members of this family contain an isopeptide bond.	0.00207737
NC_016789.1\|WP_014310856.1\|2113602_2116281_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|223256	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair].	0
NC_016789.1\|WP_014310870.1\|2125730_2126279_-\|LytR-C-terminal-domain-containing-protein	gnl\|CDD\|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	1.73546e-14
NC_016789.1\|WP_041627025.1\|2123551_2124712_+\|DUF2029-domain-containing-protein	gnl\|CDD\|172015	PRK13375, pimE, mannosyltransferase; Provisional.	1.64354e-33
NC_016789.1\|WP_014310838.1\|2097144_2098014_-\|class-C-sortase	gnl\|CDD\|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	3.90362e-72
NC_016789.1\|WP_041627023.1\|2121350_2121686_+\|hypothetical-protein	gnl\|CDD\|378012	pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343).	0.002575
NC_016789.1\|WP_014310867.1\|2121968_2123342_+\|dipeptidase	gnl\|CDD\|236127	PRK07907, PRK07907, hypothetical protein; Provisional.	0
NC_016789.1\|WP_014310839.1\|2098014_2099592_-\|SpaH/EbpB-family-LPXTG-anchored-major-pilin	gnl\|CDD\|275067	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain. The Streptococcus Pneumoniae pilus backbone protein, RrgB, has three tandem domains with Lys-to-Asn isopeptide bonds, but these three regions are extremely divergent in sequence. This model represents the homology domain family of the D2 domain. It occurs just once in many surface proteins but up to twenty times in some pilin subunit proteins. Three of every four members have the typical Gram-positive C-terminal motif, LPXTG, although in many cases this motif may be involved in pilin subunit cross-linking rather than cell wall attachment. Proteins with this domain include fimbrial proteins with lectin-like adhesion functions, and the majority of characterized members are involved in surface adhesion to host structures.	9.99464e-10
NC_016789.1\|WP_014310833.1\|2086752_2087049_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	6.46994e-22
NC_016789.1\|WP_010935518.1\|2116390_2116927_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	2.87261e-81
NC_016789.1\|WP_014310843.1\|2101590_2102487_-\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	3.75853e-147

>NC_016789.1|WP_014310845.1|2104768_2106409_-|chaperonin-GroEL
MAKIIAFDEEARRGLEKGLNTLADAVKVTLGPKGRNVVLEKSWGAPTITNDGVSIAREIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGSNPMGIKRGIELATAKVTEALLASAKEVETEEQIAATAGISAADPAIGEQIAKAMYAVGGGKLNKESVITVEESNTFGVDLEVTEGMRFDKGYISGYFATDMERLEAVLEDPYILLVSGKISNIKELLPLLEKVMQTGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAQLQDMAILTGGQVISEEVGLSLETADLPLLGRARKVVVTKDDTTIVEGAGDSAQIDGRVNQIRTEIENSDSEYDREKLQERLAKLAGGVAVIKVGAATEVELTERKHRIEDAVRNAKAAVEEGIVAGGGVALLQAAHVLANDLDLTGDEATGVKIVREALSAPLKQIALNAGLEVGVVADKVSHLPAGEGLNAATGEYVDLMAAGINDPVKVTRSALQNAASIAALFLTTEAVVADKPEPAAPAMPGADEMGGMGF
>NC_016789.1|WP_014303886.1|2104001_2104157_-|hypothetical-protein
MGSIYTHLNNFVETWEGWAKVLNGLSNFSFSGIFSGLKEIFTYSKIFLSSK
>NC_016789.1|WP_014310844.1|2102895_2103732_-|SGNH/GDSL-hydrolase-family-protein
MKKLSGVFAAVIAAVSIISASAASAAEGNLVNFGDSIAADSPTFAYIGNRIARTFQYGSSIPGKNCIQSPTNYGHQTAQRLGLTIADYSCPGATSVANGPKFFDQVDQALADGTLNAGTRRVLITQGFNDAYNLKGWDQGHIRGAYVDAMRPQIDRIRAAAPNARIQIVGYLPIADNGRACLFHVLPSGPAFADWRKLPFGSVSYWEDTAQWMNVDLANATGTEFVDLKVRAGNHGMCAPDHERWFAGIVDFTAGGGNMPLHVNSAGHAGIADILARS
>NC_016789.1|WP_014310843.1|2101590_2102487_-|polyphosphate-kinase-2
MADHKDELPIIDLAATEGYIVDDSDEDDPVLLAPDGTPIDTWRESYPYEERMTRDEYEKTKRALQIELLKWQNWTKDTGQRHIILFEGRDAAGKGGTIKRFNEHLNPRGARTVALEKPSPRESTSWYFQRYIEHFPCAGEIVFFDRSWYNRSGVERVMGFCTESQHAEFLREVPMLENMILGSGISLTKFWFSVTQKEQRTRFAIRQVDPVRQWKLSPMDLASLDRWDDYTRAKEEQFRYTDTDEAPWITIRSNDKKRARINAMLYILSKFEYANKDHEVVGEPDPLIVTRGRDRIGD
>NC_016789.1|WP_014310840.1|2099824_2100637_+|hypothetical-protein
MNMRTTKIVAPLVAMALCTPNIAFAQEESNLTTISGSTDIDGNYSLTRSISAINRNNSRNENNSRPKEHNTIYVNPGDTIRVKLDLKEKEDKGNHSFTDFTEVVSPIQEFSAISGTLTVKKSRSSEPYTNSLNDLPSNQTFKKTGESTIKFDSHSSTHYGDLGHQVTIEYSYKAGNKPGYYVTEFQPHASFSKGLSIFDAEKLKLTVVVNDKKQATPPEQGNQPKPPAQGEQPTPPESNGGSFGWLTGALGVLALLGGAVWFVIKHVLRL
>NC_016789.1|WP_014310839.1|2098014_2099592_-|SpaH/EbpB-family-LPXTG-anchored-major-pilin
MTVRGCRLATLATTLTLVVSSATLASVFAEETRYHAAQLGESPLGVDRLSIPERTSIAVHALMGLPTGQPANGTKIDSHNFPEVDGIPFTLYRVNNIDLTKQEGWDAASKIKLEELYVNGTPTGKVTKVATKKTERGVAKFDNLEPALYLVVQELNGAEAVVRSQPFLVAAPQTNPTGNGWLQDVHVYPKHQALSAPVKTAVDPDATQPGFSVGENVKYRVATKIPEIAANTKFEGFTVADKLPAELGEPDTNKITVTLGGEPINSTDLLVQTYQVGDRTVLSVQLACATLQSLDQHKNEELVVEFEAPVTKQPENGQLDNQAWVLPSNPTAQWDPEADGDPVLPAVASSRVSSKFGQITINKAFDGSTPSADRTATFQLHRCEADGSLVKSDPPISLDGKKEFVTGQDGKAVLSGIHLGTLQLESNVMKYTDAWAGKGTEFCLVETATARGYELLPKPVIVKLEANQSTNVLVKQEVKITNKKKNAGFELPLTGGSGRIAITIGIVGLLVALASYVLSRRKDNR
>NC_016789.1|WP_014310838.1|2097144_2098014_-|class-C-sortase
MKHQAGERRNAFAILAFVIAIVSVGFLLYPVAATAWNNVRQARVAQSYENSYEADSPEVRGSVLEAARQYNTSVVGFPILDPWLNRASKNSGPYLDYLQQLNPQRAERPVIASISIPTIDVYLPIYHGTDTTTLEHGLGHLYGSALPVGGTGTHSVITGHSGLANATLFDNLEDVKEHDPIYITVQGETLKYEVDAINVVLPEDTKLLANDPNKDQITLITCTPYAVNSHRLLVRAHRVDLDPNDPNLTQTGTKIWQPWMLWTAALALAAITIIITLVFRRKKTTTHEK
>NC_016789.1|WP_041627015.1|2096525_2097155_-|carboxypeptidase-regulatory-like-domain-containing-protein
MKNNAINATVLSLALIIGTTPAHAQETNTLVIDLEPPAAFADDQPQGHNIDITVAKLHNIDPQDHERIRDLQRNGVPNTISEEQLHTARTDATGTATITNLPPGAYVIRDSNTTKPRFSPLVIPLGIDTTSPTMTLRPKLIDVTPGAPNVPSTPSVPSPPSATASAPAKKTPPRLAFTGASILGLLAIATISTLIGIALLRTRRAEKKG
>NC_016789.1|WP_014310834.1|2087123_2087585_+|winged-helix-turn-helix-transcriptional-regulator
MSPTLGYMTPEIPPDLLHSPTFQAERIRKCLRDGSEEVLSKYSVRMREYWILGFVAGVEPPTQVAIAAALGVDPSDMVRLIDSVENRGWVRRELDPRDRRRHLVHITDSGRALYEELSVLVAQSEAKVLAAAGDVTTAQAMLRRLANQLVFGV
>NC_016789.1|WP_014310833.1|2086752_2087049_+|rhodanese-like-domain-containing-protein
MFVMREVSVTEVPADAQLIDVRETDEFAEVHASGAKNIPMSEVTTRVGEIDCDKDIYVICKGGGRSARVIEYLNARDIDAINVAEGTDGWVAAGLPTE
>NC_016789.1|WP_014310849.1|2108769_2109015_-|hypothetical-protein
MQARPIFHRTHDAIRAYVTVVMAALAMSKQIYLISGVIAPKRVECLKELCHVTVDTGTHCYDIPLEINEKTTKLITAILEA
>NC_016789.1|WP_014310855.1|2112218_2113301_-|alkene-reductase
MTTLFEPATAGVLELNNRITMAPLTRSRAGQDGVPTDMHVEYYKQRANNGLIVTEGTFFEDINRAFLGQTGIATADQQEGWRKVAEAVHEQGGNIVMQIMHGGRLTLPSINGFDQGESSSAIAPGVTLHGDGESREEVPTPVALDAEGIKRVIQKFTEGARRAIDAGMDGVEVHGANGYLLHQFLAPSSNDRTDEYGGSPENRARLAIEVIRSIADEIGADRLGLRISPMHNIQGCIEEDEDDVRATYKVLLDGIADLNIAYLSILYQDAESDLVAYLRESFGGFTILNTGFGVVTELEDARYIVENGLADAVAVGREIIANPDLSYRWKNNLALNSIDFDTFYTPGPHGYIDYPMVDEG
>NC_016789.1|WP_014310856.1|2113602_2116281_+|excinuclease-ABC-subunit-UvrA
MSYLHERITDKETHIQPNVRVMGARQNNLQNVDLSVPRDALVVFTGVSGSGKSSLAFGTLYAESQRRYLESVAPYARRLIDQAGVPEVDSITGMPPAVALQQQRGGQNSRSTVGSITTISSLVRMLYSRAGQYPEHQSMLYAEDFSANTPQGACPKCHGIGRVYEVEENQMVPDPTKTIRERAIASWPTAWHGHQLRDVLVALGYDVDVPWKDLPKKDRDWILYTEETPHVPVYSRMTLAEAQAAKKAGAEPSYNGTYVGAKRYVLDTFANTKSASMKRKVAQFLTSIPCPSCHGKRIKAEALSVTFAGVDIADFSQLPLHELVNLLEEEVQHVSKKLALDADGLETLGHGLDEENRKKSAAQRIEAGGTTHEAAPDVRRTPNLSVEKLATTARLGAGLVERLRPIIDLGLGYLSLDRMTPTLSGGELQRLRLATQLSSELFGVVYVLDEPSAGLHPQDIHALLGVLDGLKARGNSLFVVEHSIEVMQHADWIVDVGPGAGERGGKILYSGPVEGLAKVTDSVTRGYLFGDSGLPQHTPRKPSQWMKLSGVTRNNLHNVDIEIPLGVLTAVTGVSGSGKSSLVSQALPQLVGNRLGKNMSGDETDLEADDLLRAEQTPAVSGNIVGDFSGIHRVVVIDQKPIGRTPRSNIATYTGLFDHVRRRFAETVEAKRRRYKPGRFSFNVAGGRCPTCEGEGSVMVELLFLPSVYTKCPDCHGTRYQSSTLEILWRGKNVSEVLDLSVNEALDFFEGEFDIMRSLTALRDVGLGYLRLGQPATELSGGEAQRVKLATELQRAQRGDTLYVLDEPTTGLHCSDADRLIAHLQTLVDSGNTVVMVELDMRIIAAADYVIDMGPGAGEEGGQIVAAGAPAEVATSEESVSAPFLAEAVRLF
>NC_016789.1|WP_010935518.1|2116390_2116927_+|type-1-glutamine-amidotransferase
MSDLSNKKVLILASQGVEQIELTSPRDALKDAGVQVSLAAPEGKEFQGMNGDWEKADTFTPDLALADVNVEEFDALVLAGGTLNADAMRINPEARSITVQFFEAEKPVAAICHAPWLLIDSKKVEGKKLTSYTSVKSDLENAGAIWVDEEVVEDGNLITSRNPGDLEAFNKAIIAKLS
>NC_016789.1|WP_041627023.1|2121350_2121686_+|hypothetical-protein
MTRSTPRASCPKSPKISKKPLIPKNTKSSRLKPKSCSKKKQTKTKDQETRVNAAEAAHQKEYDKLAEQAKHETKEEARRQTEFKKEREKQKQKQKTKHASNAKKPSNTATA
>NC_016789.1|WP_168800656.1|2121726_2121864_+|hypothetical-protein
MQQESGSSDGDFIAGILAIVTGALTPMSIGTTANTFLKNNGLPHF
>NC_016789.1|WP_014310867.1|2121968_2123342_+|dipeptidase
MLDNMTKTAIQTVRPLVEKQRERIFKDLSEITSYNSVHSTPECAEDHAAACAWIVNALKEADLNVTEYPYDGGATTVIGTKEPEDGAPTVLLYCHYDVVPAGDPTAWESDPFTLTERNGRWYARGAADCKGNIAMHLAALRAVKEAGGTKLGIKFLVEGSEEQGGAELSDLIKKHPELFDTDVILIADSGNQAVGIPTMTTTLRGGARVTVTLRTLESGVHSGAFGGAAPDATAALIRLLDTLKDEHGRTTIDGVDCTAHWEGGTYDREAFKKDATMLEGTTIMGTENDNPADMVWARPAISIIGFTSTPVEQAINAVPPVASARLNLRVPPKMDANEVANALVEHLKNHVPWGAHIDVTYDDANQPFSAKLDGPAMQLFNSCLAGAYGQDDTVKIGSGGSIPLCSELLEVVPRAELALFGVEDPQATIHSPNESVDPNEIRDIAVAEAAFLLSYGK
>NC_016789.1|WP_041627025.1|2123551_2124712_+|DUF2029-domain-containing-protein
MVGMKSAPSITAMFTALFAWFLVQQSSLGSNRRFSEWFPPLDLAIYKKAGLVLDRGGHLYDRVFYHDLGFTYTPFAGLIFKFLSRMDDNMLTVVWQSANFVALLAVILMIFARKELTAGGVIAAIAMAAGFMTLIEIRDSFFYGQINLLLMFLVAMDFLPHKRTGIGIGLAAGIKLTPALFIVVLLIQRRWWSAASAVVTFAATVATGVWVPDAWDFWTNKIFDSSRVGTQTNPGAQSLRAVLVRLDAEQYWIPAIIAVLLVACFGFWRARNNPAMSLALGGITACLVSPFSWYHHWVWVVPAVVAIFIAMDFSHWALAQLGAVAAAAISVAVFSPHLLFFHDWFKDWFCVSGLVFVAGYAIISPIAGYISARTASTTGNQEPVSL
>NC_016789.1|WP_014310869.1|2124654_2125734_-|glutamate--cysteine-ligase
MIFPPSPPTLGVEWEVALADPHSRDLVPRGHEVIEKATTHLEREFLANTVELVTSVCSTVPEAIEELREGIEEVKAIAADMGLKVWAAGSHPFSDFRKQPVNEKGHYNEIIERTQYWGNQMLIWGIHVHVGISSKDRVWPIINAMLTYYPHLLALTASSPGWDGIDTGYASNRTMLYQQLPTAGLPYQFQSWDEWEAYMADQNKSGVINHTGSMHFDIRPTSYGTVEVRICDSTNLRELSAAVALTHCLIVDLERKLDRGEELPTLQDWHVAENKWRAARYGMDAEIIISRDTDEAWVTDELRALVERLSPLARELGCYDELQGVLTICQTGASYQRQRAIYKETGSWLPVVDAVLAEM
>NC_016789.1|WP_014310870.1|2125730_2126279_-|LytR-C-terminal-domain-containing-protein
MNLVKQLPLRGIAMILIAVALMLGAWGVYSVTSDNSSSAPKTSTAETSEQTPAEKSAPQAPAASDTPAPSDAPGESAAPAEKAPANKPADKPAADKPAAERPVPVRVLNNSTVQGLAAQVADTLRSHGIDVVEVGNLPDAVVPETTVFYPAGHQAQAQKIADQLHAAIAQHDNPDIVVVTVQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_016789_1	1.8\|32295\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32295-32327	33	KY613597	Corynebacterium phage LGCM-V2, complete genome	4618-4650	2	0.939
NC_016789_1	1.8\|32295\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32295-32327	33	KY624612	Corynebacterium phage LGCM-V6, complete genome	4618-4650	2	0.939
NC_016789_1	1.8\|32295\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32295-32327	33	KY566218	Corynebacterium phage LGCM-VI, complete genome	4618-4650	2	0.939
NC_016789_1	1.8\|32295\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32295-32327	33	KY624613	Corynebacterium phage LGCM-V5, complete genome	4618-4650	2	0.939
NC_016789_1	1.8\|32295\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32295-32327	33	KY624615	Corynebacterium phage LGCM-V8, complete genome	4618-4650	2	0.939
NC_016789_1	1.8\|32295\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32295-32327	33	KY624611	Corynebacterium phage LGCM-V4, complete genome	4620-4652	2	0.939
NC_016789_1	1.8\|32295\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32295-32327	33	KY624616	Corynebacterium phage LGCM-V9, complete genome	4618-4650	2	0.939
NC_016789_1	1.8\|32295\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32295-32327	33	KY624610	Corynebacterium phage LGCM-V3, complete genome	4618-4650	2	0.939
NC_016789_1	1.8\|32295\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32295-32327	33	KY624614	Corynebacterium phage LGCM-V7, complete genome	4618-4650	2	0.939
NC_016789_1	1.11\|32478\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32478-32510	33	KU884561	Pseudomonas phage PaMx33, complete genome	17592-17624	7	0.788
NC_016789_1	1.11\|32478\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32478-32510	33	KU884565	Pseudomonas phage PaMx46, complete genome	17594-17626	7	0.788
NC_016789_1	1.4\|32052\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32052-32084	33	NZ_CP016699	Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence	66110-66142	8	0.758
NC_016789_1	1.16\|32783\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32783-32815	33	NZ_CP017592	Pantoea stewartii subsp. stewartii DC283 plasmid ppDSJ01, complete sequence	42600-42632	8	0.758
NC_016789_1	1.10\|32417\|33\|NC_016789\|PILER-CR,CRISPRCasFinder,CRT	32417-32449	33	NC_019699	Chroococcidiopsis thermalis PCC 7203 plasmid pCHRO.01, complete sequence	165684-165716	9	0.727

1. spacer 1.8|32295|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to KY613597 (Corynebacterium phage LGCM-V2, complete genome) position: , mismatch: 2, identity: 0.939

ccccggcatcatcgacaaagatactggccgcga	CRISPR spacer
ccctggcatcatcgacaaagatactggacgcga	Protospacer
***.*********************** *****

2. spacer 1.8|32295|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to KY624612 (Corynebacterium phage LGCM-V6, complete genome) position: , mismatch: 2, identity: 0.939

ccccggcatcatcgacaaagatactggccgcga	CRISPR spacer
ccctggcatcatcgacaaagatactggacgcga	Protospacer
***.*********************** *****

3. spacer 1.8|32295|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to KY566218 (Corynebacterium phage LGCM-VI, complete genome) position: , mismatch: 2, identity: 0.939

ccccggcatcatcgacaaagatactggccgcga	CRISPR spacer
ccctggcatcatcgacaaagatactggacgcga	Protospacer
***.*********************** *****

4. spacer 1.8|32295|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to KY624613 (Corynebacterium phage LGCM-V5, complete genome) position: , mismatch: 2, identity: 0.939

ccccggcatcatcgacaaagatactggccgcga	CRISPR spacer
ccctggcatcatcgacaaagatactggacgcga	Protospacer
***.*********************** *****

5. spacer 1.8|32295|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to KY624615 (Corynebacterium phage LGCM-V8, complete genome) position: , mismatch: 2, identity: 0.939

ccccggcatcatcgacaaagatactggccgcga	CRISPR spacer
ccctggcatcatcgacaaagatactggacgcga	Protospacer
***.*********************** *****

6. spacer 1.8|32295|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to KY624611 (Corynebacterium phage LGCM-V4, complete genome) position: , mismatch: 2, identity: 0.939

ccccggcatcatcgacaaagatactggccgcga	CRISPR spacer
ccctggcatcatcgacaaagatactggacgcga	Protospacer
***.*********************** *****

7. spacer 1.8|32295|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to KY624616 (Corynebacterium phage LGCM-V9, complete genome) position: , mismatch: 2, identity: 0.939

ccccggcatcatcgacaaagatactggccgcga	CRISPR spacer
ccctggcatcatcgacaaagatactggacgcga	Protospacer
***.*********************** *****

8. spacer 1.8|32295|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to KY624610 (Corynebacterium phage LGCM-V3, complete genome) position: , mismatch: 2, identity: 0.939

ccccggcatcatcgacaaagatactggccgcga	CRISPR spacer
ccctggcatcatcgacaaagatactggacgcga	Protospacer
***.*********************** *****

9. spacer 1.8|32295|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to KY624614 (Corynebacterium phage LGCM-V7, complete genome) position: , mismatch: 2, identity: 0.939

ccccggcatcatcgacaaagatactggccgcga	CRISPR spacer
ccctggcatcatcgacaaagatactggacgcga	Protospacer
***.*********************** *****

10. spacer 1.11|32478|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to KU884561 (Pseudomonas phage PaMx33, complete genome) position: , mismatch: 7, identity: 0.788

ctctggtataaaaccagccccagttagtgcagt	CRISPR spacer
ctctggtacaagaccagccccagtagtaggagt	Protospacer
********.**.************ .  * ***

11. spacer 1.11|32478|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to KU884565 (Pseudomonas phage PaMx46, complete genome) position: , mismatch: 7, identity: 0.788

ctctggtataaaaccagccccagttagtgcagt	CRISPR spacer
ctctggtacaagaccagccccagtagtaggagt	Protospacer
********.**.************ .  * ***

12. spacer 1.4|32052|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016699 (Lactococcus lactis subsp. lactis strain 275 plasmid p275A, complete sequence) position: , mismatch: 8, identity: 0.758

tgccaaattccaacaaaaatatacctgg-atcgc	CRISPR spacer
taacagattccaacaaaaataaacctgatatta-	Protospacer
*. **.*************** *****. **..

13. spacer 1.16|32783|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017592 (Pantoea stewartii subsp. stewartii DC283 plasmid ppDSJ01, complete sequence) position: , mismatch: 8, identity: 0.758

cgccggtagggtatgcgaccgccgcgcaggtca	CRISPR spacer
cgccggtcgggtatgccaccgccgtttgggtgt	Protospacer
******* ******** *******. ..***

14. spacer 1.10|32417|33|NC_016789|PILER-CR,CRISPRCasFinder,CRT matches to NC_019699 (Chroococcidiopsis thermalis PCC 7203 plasmid pCHRO.01, complete sequence) position: , mismatch: 9, identity: 0.727

cgtcgagccgaccaattcgccgcccaaatactc	CRISPR spacer
aaacgagccgaccaaatcgccgccgaaaaagct	Protospacer
 . ************ ******** *** * ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

114336 : 227548

112

Corynebacterium_phage(86.76%)

portal,protease,capsid,integrase,transposase,head,tail

attL 175440:175462|attR 213998:214020

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014309818.1\|114336_115257_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_041626772.1\|115246_116155_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_014309820.1\|116175_116613_-	hypothetical protein	NA	NA	NA	NA
WP_014309821.1\|116835_120231_-	arabinosyltransferase domain-containing protein	NA	NA	NA	NA
WP_014309822.1\|120223_122224_-	arabinofuranosyltransferase	NA	NA	NA	NA
WP_010934068.1\|122418_123180_-	decaprenylphospho-beta-D-erythro-pentofuranosid- 2-ulose 2-reductase	NA	NA	NA	NA
WP_014309823.1\|123199_124666_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_021334761.1\|124782_125031_-	hypothetical protein	NA	NA	NA	NA
WP_010934070.1\|125059_125494_+	hypothetical protein	NA	NA	NA	NA
WP_014309825.1\|125490_126039_+	hypothetical protein	NA	NA	NA	NA
WP_014309049.1\|126050_126470_+	GtrA family protein	NA	NA	NA	NA
WP_014309826.1\|126679_127459_+	DUF559 domain-containing protein	NA	NA	NA	NA
WP_003850156.1\|127592_128510_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_010934074.1\|128683_129649_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_010934075.1\|129747_130482_+	metal ABC transporter ATP-binding protein	R4TX06	Phaeocystis_globosa_virus	1.8e-09	26.3
WP_014309828.1\|131373_132225_+	metal ABC transporter permease	NA	NA	NA	NA
WP_014309829.1\|132308_133346_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003850169.1\|133411_134191_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.9e-10	26.5
WP_003850170.1\|134209_135115_-	ABC transporter permease	NA	NA	NA	NA
WP_014309830.1\|135206_136400_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_014309831.1\|136396_137344_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
WP_014309832.1\|137698_138733_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	3.2e-15	25.1
WP_014309833.1\|139265_140273_+	DUF3644 domain-containing protein	A0A220NQR4	Corynebacterium_phage	6.9e-108	57.9
WP_003850184.1\|140501_141728_-\|integrase	site-specific integrase	A0A1W6JRD7	Corynebacterium_phage	7.6e-218	90.7
WP_003850187.1\|141827_142850_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_003850189.1\|142861_143425_-	hypothetical protein	NA	NA	NA	NA
WP_003850190.1\|143519_143927_-	ImmA/IrrE family metallo-endopeptidase	A0A1W6JRC2	Corynebacterium_phage	3.8e-73	98.5
WP_003850192.1\|143936_144428_-	hypothetical protein	A0A1W6JRB0	Corynebacterium_phage	5.2e-69	85.3
WP_016830425.1\|144829_145297_+	hypothetical protein	NA	NA	NA	NA
WP_003850198.1\|145520_145901_-	hypothetical protein	NA	NA	NA	NA
WP_014306307.1\|146088_146358_-	hypothetical protein	NA	NA	NA	NA
WP_003850201.1\|146448_147267_+	phage antirepressor Ant	A0A1W6JRI1	Corynebacterium_phage	9.2e-135	87.5
WP_003850203.1\|147286_147487_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003850204.1\|147483_147726_+	hypothetical protein	A0A1W6JRC8	Corynebacterium_phage	8.4e-20	59.0
WP_003850206.1\|147737_147962_+	hypothetical protein	A0A1W6JRD0	Corynebacterium_phage	4.9e-06	44.4
WP_003850207.1\|147958_148105_+	hypothetical protein	NA	NA	NA	NA
WP_003850214.1\|148520_149222_+	hypothetical protein	NA	NA	NA	NA
WP_003850217.1\|149657_150866_+	hypothetical protein	A0A220NQT1	Corynebacterium_phage	2.6e-133	66.2
WP_003850220.1\|150858_151446_+	hypothetical protein	A0A1W6JRC6	Corynebacterium_phage	1.0e-58	59.5
WP_003850222.1\|151530_151848_+	HNH endonuclease	A0A1W6JRD4	Corynebacterium_phage	1.4e-51	100.0
WP_003850225.1\|152000_152345_+	hypothetical protein	A0A1W6JRH9	Corynebacterium_phage	3.5e-19	50.5
WP_003850227.1\|152334_153936_+	hypothetical protein	A0A1W6JRF6	Corynebacterium_phage	3.6e-159	77.2
WP_014309836.1\|153948_155199_+\|portal	phage portal protein	A0A1W6JRE1	Corynebacterium_phage	3.3e-224	92.8
WP_003850232.1\|155195_156239_+\|head,protease	HK97 family phage prohead protease	A0A1W6JRD9	Corynebacterium_phage	3.4e-182	91.7
WP_003850233.1\|156235_157486_+\|capsid	phage major capsid protein	A0A1W6JRF1	Corynebacterium_phage	3.7e-204	88.5
WP_003850234.1\|157485_157686_+	hypothetical protein	A0A1W6JRE2	Corynebacterium_phage	2.3e-15	65.2
WP_003850235.1\|157707_158190_+	hypothetical protein	A0A1W6JRD8	Corynebacterium_phage	1.6e-83	93.8
WP_003850236.1\|158186_158549_+	hypothetical protein	A0A1W6JRD5	Corynebacterium_phage	2.1e-59	93.3
WP_003850237.1\|158541_158808_+	hypothetical protein	A0A1W6JRE6	Corynebacterium_phage	1.5e-38	94.3
WP_003850238.1\|158797_159175_+	hypothetical protein	A0A1W6JRI9	Corynebacterium_phage	5.8e-60	89.6
WP_014309838.1\|159203_160151_+	hypothetical protein	A0A1W6JRH0	Corynebacterium_phage	5.6e-152	83.8
WP_003850240.1\|160247_160625_+	hypothetical protein	A0A1W6JRK1	Corynebacterium_phage	1.3e-59	96.0
WP_014309843.1\|160786_160996_+	hypothetical protein	A0A1W6JRF2	Corynebacterium_phage	1.4e-31	91.3
WP_003850243.1\|161005_166648_+\|tail	phage tail tape measure protein	A0A1W6JRG1	Corynebacterium_phage	0.0e+00	84.2
WP_003850245.1\|166657_167410_+	hypothetical protein	A0A1W6JRF0	Corynebacterium_phage	1.0e-127	88.0
WP_014309840.1\|168269_169385_+	hypothetical protein	Q37922	Corynephage	2.1e-166	98.1
WP_014309841.1\|169384_170569_+	hypothetical protein	A0A1W6JRF8	Corynebacterium_phage	2.9e-49	59.9
WP_003850252.1\|171292_172060_+	N-acetylmuramoyl-L-alanine amidase	A0A2P1JY73	Gordonia_phage	6.3e-61	50.6
WP_003850254.1\|172056_172368_+	hypothetical protein	A0A1W6JQF9	Corynebacterium_phage	1.6e-07	47.4
WP_003850256.1\|172378_172843_+	hypothetical protein	A0A1W6JRF4	Corynebacterium_phage	4.8e-56	71.5
WP_003850259.1\|172839_173178_+	hypothetical protein	A0A1W6JRH1	Corynebacterium_phage	5.4e-49	89.3
WP_003850266.1\|173527_175210_+	diphtheria toxin	A7UH54	Corynephage	0.0e+00	98.0
175440:175462	attL	NA	NA	NA	NA
WP_014301227.1\|175819_177394_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_014309833.1\|177758_178766_+	DUF3644 domain-containing protein	A0A220NQR4	Corynebacterium_phage	6.9e-108	57.9
WP_003850184.1\|178994_180221_-\|integrase	site-specific integrase	A0A1W6JRD7	Corynebacterium_phage	7.6e-218	90.7
WP_003850187.1\|180320_181343_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_003850189.1\|181354_181918_-	hypothetical protein	NA	NA	NA	NA
WP_003850190.1\|182012_182420_-	ImmA/IrrE family metallo-endopeptidase	A0A1W6JRC2	Corynebacterium_phage	3.8e-73	98.5
WP_003850192.1\|182429_182921_-	hypothetical protein	A0A1W6JRB0	Corynebacterium_phage	5.2e-69	85.3
WP_010934091.1\|183034_183277_+	helix-turn-helix transcriptional regulator	A0A1W6JRC7	Corynebacterium_phage	1.6e-34	98.7
WP_041626784.1\|183323_183794_+	hypothetical protein	NA	NA	NA	NA
WP_003850198.1\|184017_184398_-	hypothetical protein	NA	NA	NA	NA
WP_014306307.1\|184585_184855_-	hypothetical protein	NA	NA	NA	NA
WP_003850201.1\|184945_185764_+	phage antirepressor Ant	A0A1W6JRI1	Corynebacterium_phage	9.2e-135	87.5
WP_003850203.1\|185783_185984_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003850204.1\|185980_186223_+	hypothetical protein	A0A1W6JRC8	Corynebacterium_phage	8.4e-20	59.0
WP_003850206.1\|186234_186459_+	hypothetical protein	A0A1W6JRD0	Corynebacterium_phage	4.9e-06	44.4
WP_003850207.1\|186455_186602_+	hypothetical protein	NA	NA	NA	NA
WP_003850214.1\|187017_187719_+	hypothetical protein	NA	NA	NA	NA
WP_003850217.1\|188154_189363_+	hypothetical protein	A0A220NQT1	Corynebacterium_phage	2.6e-133	66.2
WP_003850220.1\|189355_189943_+	hypothetical protein	A0A1W6JRC6	Corynebacterium_phage	1.0e-58	59.5
WP_003850222.1\|190027_190345_+	HNH endonuclease	A0A1W6JRD4	Corynebacterium_phage	1.4e-51	100.0
WP_003850225.1\|190497_190842_+	hypothetical protein	A0A1W6JRH9	Corynebacterium_phage	3.5e-19	50.5
WP_003850227.1\|190831_192433_+	hypothetical protein	A0A1W6JRF6	Corynebacterium_phage	3.6e-159	77.2
WP_014309836.1\|192445_193696_+\|portal	phage portal protein	A0A1W6JRE1	Corynebacterium_phage	3.3e-224	92.8
WP_003850232.1\|193692_194736_+\|head,protease	HK97 family phage prohead protease	A0A1W6JRD9	Corynebacterium_phage	3.4e-182	91.7
WP_003850233.1\|194732_195983_+\|capsid	phage major capsid protein	A0A1W6JRF1	Corynebacterium_phage	3.7e-204	88.5
WP_003850234.1\|195982_196183_+	hypothetical protein	A0A1W6JRE2	Corynebacterium_phage	2.3e-15	65.2
WP_003850235.1\|196204_196687_+	hypothetical protein	A0A1W6JRD8	Corynebacterium_phage	1.6e-83	93.8
WP_003850236.1\|196683_197046_+	hypothetical protein	A0A1W6JRD5	Corynebacterium_phage	2.1e-59	93.3
WP_003850237.1\|197038_197305_+	hypothetical protein	A0A1W6JRE6	Corynebacterium_phage	1.5e-38	94.3
WP_003850238.1\|197294_197672_+	hypothetical protein	A0A1W6JRI9	Corynebacterium_phage	5.8e-60	89.6
WP_014309838.1\|197700_198648_+	hypothetical protein	A0A1W6JRH0	Corynebacterium_phage	5.6e-152	83.8
WP_003850240.1\|198744_199122_+	hypothetical protein	A0A1W6JRK1	Corynebacterium_phage	1.3e-59	96.0
WP_014309843.1\|199283_199493_+	hypothetical protein	A0A1W6JRF2	Corynebacterium_phage	1.4e-31	91.3
WP_003850243.1\|199502_205145_+\|tail	phage tail tape measure protein	A0A1W6JRG1	Corynebacterium_phage	0.0e+00	84.2
WP_003850245.1\|205154_205907_+	hypothetical protein	A0A1W6JRF0	Corynebacterium_phage	1.0e-127	88.0
WP_014309840.1\|206768_207884_+	hypothetical protein	Q37922	Corynephage	2.1e-166	98.1
WP_014309841.1\|207883_209068_+	hypothetical protein	A0A1W6JRF8	Corynebacterium_phage	2.9e-49	59.9
WP_003850252.1\|209791_210559_+	N-acetylmuramoyl-L-alanine amidase	A0A2P1JY73	Gordonia_phage	6.3e-61	50.6
WP_003850254.1\|210555_210867_+	hypothetical protein	A0A1W6JQF9	Corynebacterium_phage	1.6e-07	47.4
WP_003850256.1\|210877_211342_+	hypothetical protein	A0A1W6JRF4	Corynebacterium_phage	4.8e-56	71.5
WP_003850259.1\|211338_211677_+	hypothetical protein	A0A1W6JRH1	Corynebacterium_phage	5.4e-49	89.3
WP_003850266.1\|212026_213709_+	diphtheria toxin	A7UH54	Corynephage	0.0e+00	98.0
WP_014309845.1\|214269_215643_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
213998:214020	attR	NA	NA	NA	NA
WP_014309846.1\|215639_217004_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_003850286.1\|217094_217988_+	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA
WP_014309847.1\|217981_218539_+	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA
WP_014309851.1\|221283_222816_+	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA
WP_014309852.1\|222947_223859_+	class C sortase	NA	NA	NA	NA
WP_014309853.1\|223866_224697_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_014309854.1\|226318_227548_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1872792 : 1930262

Agrobacterium_phage(22.22%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041626993.1\|1872792_1875501_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	7.2e-136	37.4
WP_014310721.1\|1875595_1876576_-	malate dehydrogenase	NA	NA	NA	NA
WP_014303750.1\|1877058_1877811_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_014310722.1\|1877847_1879140_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.3e-131	54.2
WP_014310723.1\|1879286_1881812_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	2.1e-65	30.8
WP_003852475.1\|1881906_1882536_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.6e-38	44.0
WP_003852476.1\|1882553_1883153_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.3e-41	46.7
WP_014310724.1\|1883318_1884665_-	trigger factor	NA	NA	NA	NA
WP_003852480.1\|1885493_1885730_+	hypothetical protein	NA	NA	NA	NA
WP_003852481.1\|1885876_1886659_+	hypothetical protein	NA	NA	NA	NA
WP_014302237.1\|1886735_1887209_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_003852486.1\|1887240_1887861_-	DsbA family protein	NA	NA	NA	NA
WP_014310725.1\|1887982_1890601_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.1e-43	27.5
WP_157894168.1\|1890577_1890724_-	hypothetical protein	NA	NA	NA	NA
WP_010935342.1\|1890857_1891874_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_010935343.1\|1891885_1892278_+	globin	NA	NA	NA	NA
WP_014310726.1\|1892274_1892895_-	hypothetical protein	NA	NA	NA	NA
WP_010935345.1\|1892904_1893348_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003852495.1\|1893474_1895145_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	1.7e-47	28.2
WP_010935347.1\|1895242_1895731_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_014310727.1\|1895914_1897951_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_003852501.1\|1900482_1900683_+	YbdD/YjiX family protein	NA	NA	NA	NA
WP_014310728.1\|1900714_1901920_-	MFS transporter	NA	NA	NA	NA
WP_014302245.1\|1902325_1903357_+	oxidoreductase	NA	NA	NA	NA
WP_014307200.1\|1903416_1904217_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003852526.1\|1904235_1904868_+	oligoribonuclease	M4M9I5	Vibrio_phage	5.6e-23	38.6
WP_014310729.1\|1905045_1905876_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_041627157.1\|1905876_1907118_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_014310731.1\|1907796_1908384_-	hypothetical protein	NA	NA	NA	NA
WP_014310734.1\|1910360_1911590_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_014302249.1\|1911645_1912095_+	isochorismatase family protein	NA	NA	NA	NA
WP_010935368.1\|1912098_1912404_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003852591.1\|1912416_1912692_-	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_010935369.1\|1912780_1913254_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_003852595.1\|1913254_1913899_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_014310735.1\|1913895_1914279_-	holo-ACP synthase	NA	NA	NA	NA
WP_014310736.1\|1914313_1923247_-	type I polyketide synthase	NA	NA	NA	NA
WP_080574097.1\|1923425_1923707_-	hypothetical protein	NA	NA	NA	NA
WP_014303769.1\|1924109_1924481_+	hypothetical protein	NA	NA	NA	NA
WP_014310738.1\|1924508_1924865_+	DUF3817 domain-containing protein	NA	NA	NA	NA
WP_014310739.1\|1924902_1925520_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	Q66YC8	Euphorbia_ringspot_virus	3.2e-07	41.8
WP_014310740.1\|1925516_1926242_-	ribonuclease PH	NA	NA	NA	NA
WP_014317018.1\|1926252_1927020_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_014310741.1\|1927072_1927870_-	glutamate racemase	NA	NA	NA	NA
WP_014303773.1\|1927866_1928439_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_014310742.1\|1928435_1929368_-	P1 family peptidase	NA	NA	NA	NA
WP_010935379.1\|1929367_1929904_-	DUF2017 domain-containing protein	NA	NA	NA	NA
WP_003852614.1\|1929920_1930262_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_016789

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection