CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_017047	Rahnella aquatilis HX2, complete sequence	2 crisprs	DEDDh,DinG,cas3,csa3,WYL	1	6
NC_017060	Rahnella aquatilis HX2 plasmid PRA1, complete sequence	0 crisprs	csa3,WYL,DEDDh	0	1
NC_017773	Rahnella aquatilis HX2 plasmid PRA2, complete sequence	0 crisprs	NA	0	0
NC_017807	Rahnella aquatilis HX2 plasmid PRA2, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_017047_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017047_1

1948917-1949060

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGGACAGGCAGCTTAGAAAT	PILER-CR
CTGCCGGACAGGCAGCTTAGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_017047_1

>merge|NC_017047|1|1948917-1949060|PILER-CR,CRISPRCasFinder
CTGCCGGACAGGCAGCTTAGAAATCGCCTTTAAACGCAGCGCCGCATCCGGCGGGGTTCACTGCCGGATAGGCAGCTTAGAAACAATCAGCACGGGGGGATGTAGTCCAGTTATCGTTCACTGCCGCACAGGCAGCTTAGAAAT

>NC_017047|1|1|1948917-1949060|PILER-CR
CTGCCGGACAGGCAGCTTAGAAATCGCCT	TTAAACGCAGCGCCGCATCCGGCGGGGTTCA
CTGCCGGATAGGCAGCTTAGAAACAATCA	GCACGGGGGGATGTAGTCCAGTTATCGTTCA
CTGCCGCACAGGCAGCTTAGAAAT

>NC_017047|1|1|1948917-1949059|CRISPRCasFinder
CTGCCGGACAGGCAGCTTAGAAA	TCGCCTTTAAACGCAGCGCCGCATCCGGCGGGGTTCA
CTGCCGGATAGGCAGCTTAGAAA	CAATCAGCACGGGGGGATGTAGTCCAGTTATCGTTCA
CTGCCGCACAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017047.1\|WP_013575155.1\|1958820_1959465_+\|protein-phosphatase-CheZ	unknown	unknown	gnl\|CDD\|236868
NC_017047.1\|WP_013575154.1\|1958420_1958810_+\|chemotaxis-response-regulator-CheY	unknown	unknown	gnl\|CDD\|170568
NC_017047.1\|WP_013575149.1\|1952213_1952807_+\|hypothetical-protein	unknown	unknown	unknown
NC_017047.1\|WP_148267121.1\|1942880_1942979_-\|YoaK-family-small-membrane-protein	unknown	unknown	unknown
NC_017047.1\|WP_015689758.1\|1950234_1951710_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NC_017047.1\|WP_015689751.1\|1943577_1944000_+\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	unknown	unknown	gnl\|CDD\|182350
NC_017047.1\|WP_015689748.1\|1939414_1939651_+\|hypothetical-protein	unknown	unknown	unknown
NC_017047.1\|WP_015689752.1\|1943999_1945265_+\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	unknown	unknown	gnl\|CDD\|179607
NC_017047.1\|WP_013575148.1\|1951908_1952205_+\|hypothetical-protein	unknown	unknown	unknown
NC_017047.1\|WP_015689755.1\|1946060_1947206_-\|RES-family-NAD+-phosphorylase	unknown	unknown	gnl\|CDD\|378053
NC_017047.1\|WP_013575146.1\|1949106_1950120_-\|transcriptional-regulator-FtrA	unknown	unknown	gnl\|CDD\|181818
NC_017047.1\|WP_013575150.1\|1952903_1954598_+\|Tar-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NC_017047.1\|WP_015689747.1\|1938615_1939290_+\|hypothetical-protein	unknown	unknown	unknown
NC_017047.1\|WP_015689749.1\|1939709_1941221_+\|tail-fiber-domain-containing-protein	unknown	unknown	gnl\|CDD\|379398
NC_017047.1\|WP_013575153.1\|1957324_1958374_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NC_017047.1\|WP_013575152.1\|1956452_1957325_+\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|236725
NC_017047.1\|WP_049804359.1\|1947654_1948128_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
NC_017047.1\|WP_015689757.1\|1948151_1948505_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378971
NC_017047.1\|WP_015689750.1\|1941284_1941674_+\|hypothetical-protein	unknown	unknown	unknown
NC_017047.1\|WP_015689759.1\|1954719_1956390_+\|Tar-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001

Protein	Function_ID	Function_description	E-value
NC_017047.1\|WP_013575154.1\|1958420_1958810_+\|chemotaxis-response-regulator-CheY	gnl\|CDD\|170568	PRK10610, PRK10610, chemotaxis protein CheY.	5.35691e-83
NC_017047.1\|WP_015689758.1\|1950234_1951710_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.50236e-51
NC_017047.1\|WP_015689751.1\|1943577_1944000_+\|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	4.90935e-59
NC_017047.1\|WP_015689755.1\|1946060_1947206_-\|RES-family-NAD+-phosphorylase	gnl\|CDD\|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	1.88656e-16
NC_017047.1\|WP_013575150.1\|1952903_1954598_+\|Tar-ligand-binding-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	0
NC_017047.1\|WP_013575155.1\|1958820_1959465_+\|protein-phosphatase-CheZ	gnl\|CDD\|236868	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional.	7.60403e-139
NC_017047.1\|WP_015689752.1\|1943999_1945265_+\|translesion-error-prone-DNA-polymerase-V-subunit-UmuC	gnl\|CDD\|179607	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC.	0
NC_017047.1\|WP_013575146.1\|1949106_1950120_-\|transcriptional-regulator-FtrA	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	8.45281e-160
NC_017047.1\|WP_015689759.1\|1954719_1956390_+\|Tar-ligand-binding-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.87142e-170
NC_017047.1\|WP_015689749.1\|1939709_1941221_+\|tail-fiber-domain-containing-protein	gnl\|CDD\|379398	pfam13884, Peptidase_S74, Chaperone of endosialidase. This is the very C-terminal, chaperone, domain of the bacteriophage protein endosialidase. It releases itself, via the serine-lysine dyad at the N-terminus, from the remainder of the end-tail-spike. Cleavage occurs after the threonine which is the final residue of the End-tail-spike family, pfam12219. The endosialidase protein forms homotrimeric molecules in bacteriophages. The catalytic dyad allows this portion of the molecule to be cleaved from the more N-terminal region such that the latter can fold and presumably bind to DNA.	6.77581e-07
NC_017047.1\|WP_013575153.1\|1957324_1958374_+\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NC_017047.1\|WP_013575152.1\|1956452_1957325_+\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|236725	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR.	0
NC_017047.1\|WP_049804359.1\|1947654_1948128_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	0.00411266
NC_017047.1\|WP_015689757.1\|1948151_1948505_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378971	pfam12844, HTH_19, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains.	3.8278e-07

>NC_017047.1|WP_015689757.1|1948151_1948505_-|helix-turn-helix-transcriptional-regulator
MALTEFGKAVRIARIEIDYTLLTMAEELGTSSAFLSGLETGSKKIPKKWVKTISTFFKSKNHPIENLQELADVSNDMVPIDGLSQQQKMLVAGFAKSPWTPEQLKKFAELLEKMNRK
>NC_017047.1|WP_049804359.1|1947654_1948128_-|ImmA/IrrE-family-metallo-endopeptidase
MYQMRGTRVSPMHEVDIASKARNFCQAFGLTRQGRVKKYDTAFELLAAYSITLNVMEDDEWEITTMDLTIGHCDPSTMTISVPKRIYEMACKGERMALSIMMHELGHLLLGHKPVLHFSNVHPIQFEDAEWQADTFAEVSLAYMGYKVDQLAFDFYM
>NC_017047.1|WP_015689755.1|1946060_1947206_-|RES-family-NAD+-phosphorylase
MLICTDHINDENLLALAKTENNISQCQVCGEKRLAIDLTSPYVHTMLKAIIRYHHNEYEYNGHFGGDETFTSLIYGRGIFSPDVYESEQNSEDFDCEISSIEVYDDDGVSVHAGYFDGMPNMLLNSIKDNESSFIKEISSELKTTNHYEFEETIKEKITAYGNSFDFYIEEGQEFYRARIGVKDTKVAYSGFDLHGQRFFSPFVNEEIGKVPNLYATPGRANRTGVSYLYCATDMYTAISEVRPHPSDIVSIGKFVAIKKIRAFDLSTPHLMDFYLTDDSLKQLSDYVALANVFNTATPPSLEGRYVITQLISDCIRQVGYEGIVFSSTVGDGKNLVIFDPSKLHYIPNSQEACEIKSVKYEFSVKGIIGRDDTYEVYRED
>NC_017047.1|WP_015689752.1|1943999_1945265_+|translesion-error-prone-DNA-polymerase-V-subunit-UmuC
MFALADVNSFYASCETVFRPDLRGRPVVVLSNNDGCVIARSIEAKKLGIRMGEPFFKMRDIFEKHKIVTFSSNYALYADMSSRVMTVLEEMSPAVEVYSIDEAFMNLQGISNCQNLEEFGREVRAKVLQWTGLTVGVGIAPTKTLAKLANYAAKKWTKTGGVVDLSLLARQRKLMALVEVGEVWGIGRRISKKLNDMGIQTALQLADTPTPLIRKHFDIVLERTLRELRGEPCLELEEFAPTKQQIVCSRSFGDRVAEYDLMREAICSHAVRAAEKLRGEHQYCRHISAFIKTSPFAMNEVYYGKTAGTKLQIPTQDSRDIVAAATECLDAIWQDGHRFQKCGVMIGDFYSQGVAQLGLFDEYRPRANSEQLMAVLDGINHSGKGRVWFAGQGIQKSWEMKRQMLSPAYTTRFSDLMRVKV
>NC_017047.1|WP_015689751.1|1943577_1944000_+|translesion-error-prone-DNA-polymerase-V-autoproteolytic-subunit
MNIYYSIPDPIKLSLPFFQDKVQAGFPSPAQDYIEKGIDLNELCVNHPAATYFVMATGMSMVDAGIYEGSLLVVDRSLQAKHGDIIIASLAGEYTVKRLCTHPVFQLVPMNPDFPPIVLHDGGDELEVFGVVTFSINGFQ
>NC_017047.1|WP_148267121.1|1942880_1942979_-|YoaK-family-small-membrane-protein
MNLKFIPPIIVLIGAVGFMVWFFASGAAMPGG
>NC_017047.1|WP_015689750.1|1941284_1941674_+|hypothetical-protein
MNKKWSIALVALSVLVVSGCASSGNKHLQKETETSVQTKIQEGKTTKTEVKGMFGSPDSVNFTDGGKEVWKYSFAKVKVSGKSFIPFYGLFHNGTTGTKKELTILFDGDKVQKYTMAESAIDTKSGWAD
>NC_017047.1|WP_015689749.1|1939709_1941221_+|tail-fiber-domain-containing-protein
MSAGTIALTNNSAAVTGTGTAFTTDLKVGDFIVVIVGGVTYTLGVKTITSATALTLITAYGGPTATGNAWTAVPNATLVGITAQVAADVAKAIRGLNQDKANWQQVFSGTGTITVTLPDGSTYTGPAWNGISATLAKAYNDGGILNATVTPNSLGNTADFNIYYQTANANAIIANGYPIGKAGTLFVTKSAYGCQQMYITFQGEAFVRGLTGNFNSAAPNWSDWWPIFTGKSTIPVANGGTGAATVAAAPFAPKASPAFTGDVSIDGKLSVTSSISAAGSSVGSTGVYTQGGTSPATQGTYIGWNRTGLSGGSDFICNRGLGDGGFRFRLVNSTNTAVITEFTMLNTGQGISTAGWAAVSDIDVKRNLQEIEPEEALTALTSWRTCSWDYCDVPSGYDEDGKVTAVTKGAKGFGFIAQDVQKDCPDAVTLTQNPQLYIDEEGELFAKEDTLSLNTLGVSAAYSGAAIKALKKRNEDQAELIAALSERLKTIETTLGINNKPAS
>NC_017047.1|WP_015689748.1|1939414_1939651_+|hypothetical-protein
MTKIMMAISLAVLVSGCSGILEEQHPVCNATALIGGQETSVQIYGVRQVAHQTQYQAGDPFGWRWVSKTNFIRTTCDK
>NC_017047.1|WP_015689747.1|1938615_1939290_+|hypothetical-protein
MANYGAILVDEYGIPFSTPDTTPMSLVSKNVYNFGGGGGDINLAVSVSSPFVVAFKSDVTGVYGRLSNNSGVYTLTVGMLAGGSVGNVTVYIFGIVIPQPKPAWGIAINNAQGQCILTNETKVMNPPIAVGTPGNPANLGYNIDTTLSGNYAVMPQLTGLMVGVIHSGGATRPFQSPIQTYAYFNGSSTRISSTQTVSPGGDQLENVGYANSNDMIYAIEVSAY
>NC_017047.1|WP_013575146.1|1949106_1950120_-|transcriptional-regulator-FtrA
MQKVDLPLMSSSRHPAAPNRRLVLLAYECLCTFEFGIAVEAFGRADELTGEPLYELAVASVEEGTFGAQGGVRLVVDGGLELLEDAGTIVIPGWRSIHEPASERLIAALQKAHHNGTRIVSICAGSFVLAAAGLLDGKRATAHWNSTDVLAQKFPDVQVEHGMIYVDEGSIITSAGGAAGVDLCLHLIRRDYGIEVANRTARRMVTPPLREGNQAQLIQQPVPRHQTKTLAPLLDDLRGHLNTPLVIDQLARQAGMSRRTFLRRFHDATGTTPGEWMLTVRLEKACALLENGTLSIDRVAEQAGFGSPETLRHHFRQRLGMSPTQWRKGFVERDLVG
>NC_017047.1|WP_015689758.1|1950234_1951710_+|MFS-transporter
MKNTLALMAVCLAALMSGLEISSVPVLSPVLEQELHASFRELQWIMNAYTLACTTVLMATGTLADRYGRKRVFIISITAFGLTSLMCGLAGSAQWLIAGRFLQGLSGGAMLTCLIAILSSQFPQGKARSQAFAAWGITSGFGLGFGPIIGGTLVAWLSWRWVFLIHVVIAVLTLILALKNVVESRDGQAKKLDLGGLITLSVTVLGATFLITQGSSLGWSSVTAGAVLLATAVSAVMFIRIEKRHPHPMFDFSVFRVRAFSGALMGSVGMNFSFWPLMIYLPVYYQGGLGYGSVATGMALLAYTLPTLLMPPLGEKLTTRFGASRLIPLGLFTIGAGFMLMQIAVVHHLSLLPGALLAGIALGLTNTPVTNTTTGSVAANRAGMASGIDISARLITLAINIALMGNLLVAGIAGSLKKVMPAAGDLSLLAERIAGGSAIETLQSGQIAQALTDGFAGILLYGAAGVWVLALLSYLLFNGRGRRKTVSCEPS
>NC_017047.1|WP_013575148.1|1951908_1952205_+|hypothetical-protein
MSFREIKWKVIECLKNGNIEFEARRGIQLKNLLSTGDISPFEVAALIGRASGDHYQVRPYHFDSSIDVHIITVSSAGVPWYIKWYFTEPTSVFISVHH
>NC_017047.1|WP_013575149.1|1952213_1952807_+|hypothetical-protein
MIIYKVGDEKKAMCGVCEAFRIVSYQLRDVPFDDGSGMVKNIIAGVCKTCDSVAVIPFQSVPAIKKQLQIQRKAVETRVPAHMIDLLNMASAELGATPDFVPLLLKYYIHQLASNPESALRLVTLLTSELATGLANKRLSLKGREIGNDIEKLKSLSQIDNTTELLKGVVLMIHHDLLVNPDAHRIAVLKSFVATVA
>NC_017047.1|WP_013575150.1|1952903_1954598_+|Tar-ligand-binding-domain-containing-protein
MFNRMKVVTGIVILLVVFGALQLVSGGLFFKSLKTDKDNFTTSQQIRLQQAEFNASWIYLLQTRNTLNRAGIRFMLDANQMGSGATVKELIDTATKDLQIADQHFASYQKIPADASQNPQFAADAKKQYQVLHDALSELIELIGLGRINDFFEQPTQQYQDNFEKAFVTYIDQNDRLYNEAVKVSENSFTHAIWMLGTVLIVLAIFILLAWTGVQRILIHPLKNIVDTIRKIATGDLTHEIVVKSRNEIGQLADSLKYMQDELIRTVSGVRHGADAIYSGASEISAGNSDLSSRTEQQASALEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVANVVDTMNDIASSSKKITDITGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAQAAKEIKGLIDDSVSRINTGSVLAESAGETMHDMVNAVTRVTDIMGEITSASDEQSRGIEQVAQAITEMDRVTQQNASLVEESASASAALEEQASLLTQSVAVFTLSQTANNNVRQNPASSARLSLLTPNLSGSKAGKGGAQGTDLTENWETF
>NC_017047.1|WP_015689759.1|1954719_1956390_+|Tar-ligand-binding-domain-containing-protein
MFKHIRVSTCMFLLLIVFFVMQLVNSGLSLQAAHTDKLNFEQISNTAEQRDALSQSWSYLLQTRNTLNRAATRLALKQPQENITQLMSDAKASLKKAEDAYAAFLALPRRTEKAVALTAVNKASYQQLHDMLQTLTEMLSSGDMNGFLNGPAQKYQDQFQKDVGDYTAYVSARFGEAQTQTAASYQNVMINTSVALVLLIALTVLALVVTRRILFTPLTIMRGHFDRIGAGDISSPIVAEGRYEIKVMLESLQQMQTSLADTVRTVRHGADTMFSGLKGIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNAENARQATQLARDASNTAEKGGELTGNVVKTMNDIAGSSKKISAITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAQAAKEIKALIDESVSRVSQGSQLVESAGNTMDDIVRAVTRVTDIMGEIASASDEQSRGIEQVSIAVTQMDQVTQQNATLVQQAASSTHALEIESENLTRAVSVFRLATTDGAGQRRSGLAQGLTSRQVAQPALLPATAGAVSADNWETF
>NC_017047.1|WP_013575152.1|1956452_1957325_+|protein-glutamate-O-methyltransferase-CheR
MNQPGSPMSADNTSIMAQMIQRLPLSDTHFRRISELIYQRAGIVLADHKREMVYNRLVRRLRILGLNDFTSYMALLENDSNSPEWQAFINALTTNLTAFFREAHHFPILAEHARSRPNSYSVWSTAASTGEEPYSIAMTLSEALGPRMASCRIQASDIDTQVLEKATAGVYRLEELRTLSPQQLQKFFLKGTGPHSGLVRVRPELAQMVAFQQLNLLANQWQLNGPFDAIFCRNVMIYFDKETQEKILRRFVPLLKPGGLMFAGHSENFSQISREFYLRGQTVYGLAKER
>NC_017047.1|WP_013575153.1|1957324_1958374_+|chemotaxis-response-regulator-protein-glutamate-methylesterase
MNKIRVLSVDDSALMRQLMTEIINSHPDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEITLRALELGAIDFVTKPQLGIREGMLAYSEMIADKIRTASKARLNKSVNIDQPRILSHTPLLSSEKLIAIGSSTGGTEAIRHVLQPLPPTCPALMITQHMPPGFTRSFADRLNKLCQITVKEAEDGERVLPGHAYIAPGDRHMELTRSGANYQVKLNDGPAVNRHRPSVDVLFRSVAQFAGRNAVGVILTGMGNDGAAGMLEMHRAGAYTLAQNEASCVVFGMPREAIATGGVNEVVDLSQISQRMLAQISAGQALRI
>NC_017047.1|WP_013575154.1|1958420_1958810_+|chemotaxis-response-regulator-CheY
MADPNLRFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLRAGGFDFVVSDWNMPNMDGLDLLKTIRADAALGKLPVLMVTAEAKKENIVAAAQAGASGYVVKPFTAATLEEKLGKIFEKLGM
>NC_017047.1|WP_013575155.1|1958820_1959465_+|protein-phosphatase-CheZ
MAEIPMPANDAATAGEIIARIGQLTRMLRDSMRELGLDQAIAQAAEAIPDARDRLDYVVTMTAQAAERALNCVEAAQPRQNKLESAAKKLDKRWDEWFENPIELSDARELVTDTRSYLKEIPEHTSFTNAQLMEIMMAQDFQDLTGQVIKRMMTVVQEIENQLLMVLMENIPEQQAKAKRENDSLLNGPQLDSNGVGVVASQEQVDDLLDSLGF

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Crispr_ID: NC_017047_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017047_2

2938453-2938538

Orphan

Consensus_repeat	Method
CCCTTCGCAGGGGGAGGAGCTAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017047_2

>merge|NC_017047|2|2938453-2938538|CRISPRCasFinder
CCCTTCGCAGGGGGAGGAGCTAAAACCAAACTCTGGTCAGATTTAACTGGCGTGCTTCCTTCCCTTCGCAGGGGGAGGAGCTAAAA

>NC_017047|2|2|2938453-2938538|CRISPRCasFinder
CCCTTCGCAGGGGGAGGAGCTAAAA	CCAAACTCTGGTCAGATTTAACTGGCGTGCTTCCTT
CCCTTCGCAGGGGGAGGAGCTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017047.1\|WP_015690078.1\|2928074_2929337_+\|gallate-dioxygenase	unknown	unknown	gnl\|CDD\|184006
NC_017047.1\|WP_013575983.1\|2944768_2945641_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_017047.1\|WP_015690080.1\|2930695_2931949_-\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
NC_017047.1\|WP_015690087.1\|2948031_2949687_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200472
NC_017047.1\|WP_015690086.1\|2946373_2948032_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200472
NC_017047.1\|WP_013575979.1\|2940536_2941448_-\|D,D-dipeptide-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182131
NC_017047.1\|WP_015690081.1\|2931941_2933054_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|182148
NC_017047.1\|WP_013575973.1\|2934796_2935543_+\|4-oxalmesaconate-hydratase	unknown	unknown	gnl\|CDD\|225031
NC_017047.1\|WP_015690079.1\|2930183_2930624_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|235443
NC_017047.1\|WP_015690089.1\|2950881_2952243_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|133433
NC_017047.1\|WP_015690082.1\|2936274_2937399_+\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NC_017047.1\|WP_013575981.1\|2942530_2944111_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173877
NC_017047.1\|WP_015690083.1\|2937391_2938276_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224995
NC_017047.1\|WP_037034544.1\|2949709_2950819_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NC_017047.1\|WP_013575974.1\|2935539_2936265_+\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	unknown	unknown	gnl\|CDD\|181735
NC_017047.1\|WP_015690085.1\|2941452_2942469_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_017047.1\|WP_013575972.1\|2933415_2934645_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176126
NC_017047.1\|WP_013575982.1\|2944158_2944740_-\|D-alanyl-D-alanine-dipeptidase	unknown	unknown	gnl\|CDD\|236662
NC_017047.1\|WP_015690084.1\|2939506_2940535_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NC_017047.1\|WP_013575968.1\|2929333_2930167_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238636

Protein	Function_ID	Function_description	E-value
NC_017047.1\|WP_015690078.1\|2928074_2929337_+\|gallate-dioxygenase	gnl\|CDD\|184006	PRK13367, PRK13367, gallate dioxygenase.	0
NC_017047.1\|WP_013575983.1\|2944768_2945641_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.01967e-18
NC_017047.1\|WP_015690080.1\|2930695_2931949_-\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	1.4489e-07
NC_017047.1\|WP_015690087.1\|2948031_2949687_-\|alpha-glucosidase	gnl\|CDD\|200472	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_017047.1\|WP_015690086.1\|2946373_2948032_-\|alpha-glucosidase	gnl\|CDD\|200472	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_017047.1\|WP_013575979.1\|2940536_2941448_-\|D,D-dipeptide-ABC-transporter-permease	gnl\|CDD\|182131	PRK09881, PRK09881, D,D-dipeptide ABC transporter permease.	8.49957e-178
NC_017047.1\|WP_015690081.1\|2931941_2933054_-\|glycosyltransferase	gnl\|CDD\|182148	PRK09922, PRK09922, lipopolysaccharide 1,6-galactosyltransferase.	1.89179e-103
NC_017047.1\|WP_013575973.1\|2934796_2935543_+\|4-oxalmesaconate-hydratase	gnl\|CDD\|225031	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown].	1.99766e-54
NC_017047.1\|WP_015690079.1\|2930183_2930624_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	2.14168e-86
NC_017047.1\|WP_015690089.1\|2950881_2952243_-\|alpha-glucosidase	gnl\|CDD\|133433	cd05297, GH4_alpha_glucosidase_galactosidase, Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. Glucosidases cleave glycosidic bonds to release glucose from oligosaccharides. Alpha-glucosidases and alpha-galactosidases release alpha-D-glucose and alpha-D-galactose, respectively, via the hydrolysis of alpha-glycopyranoside bonds. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the alpha-glucosidases. Other organsisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. Alpha-glucosidases and alpha-galactosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	1.81332e-103
NC_017047.1\|WP_015690082.1\|2936274_2937399_+\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NC_017047.1\|WP_013575981.1\|2942530_2944111_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173877	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_017047.1\|WP_015690083.1\|2937391_2938276_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	2.48138e-26
NC_017047.1\|WP_037034544.1\|2949709_2950819_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NC_017047.1\|WP_013575974.1\|2935539_2936265_+\|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase	gnl\|CDD\|181735	PRK09262, PRK09262, hypothetical protein; Provisional.	2.85054e-149
NC_017047.1\|WP_015690085.1\|2941452_2942469_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.03515e-131
NC_017047.1\|WP_013575972.1\|2933415_2934645_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176126	cd08435, PBP2_GbpR, The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold. Galactose-binding protein regulator (GbpR), a member of the LysR family of bacterial transcriptional regulators, regulates the expression of chromosomal virulence gene chvE. The chvE gene is involved in the uptake of specific sugars, in chemotaxis to these sugars, and in the VirA-VirG two-component signal transduction system. In the presence of an inducing sugar such as L-arabinose, D-fucose, or D-galactose, GbpR activates chvE expression, while in the absence of an inducing sugar, GbpR represses expression. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.12023e-51
NC_017047.1\|WP_013575982.1\|2944158_2944740_-\|D-alanyl-D-alanine-dipeptidase	gnl\|CDD\|236662	PRK10178, PRK10178, D-alanyl-D-alanine dipeptidase; Provisional.	2.37942e-103
NC_017047.1\|WP_015690084.1\|2939506_2940535_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.28843e-155
NC_017047.1\|WP_013575968.1\|2929333_2930167_+\|amidohydrolase-family-protein	gnl\|CDD\|238636	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.	2.4736e-50

>NC_017047.1|WP_015690083.1|2937391_2938276_+|NAD(P)-dependent-oxidoreductase
MNNVTRITLIGLGEVGTILATDLKKQNPAPDIVAFDKLTDSAVIRQRARDAGVHFAPSLEDAVKGSQIIFSAVTAAEALNVAGAVARHLAPGQFFLDLNSVSPHTKREAMALIEQAGGNYIDVAVMAPYPPARLKTPLLLGGTHVYAINEWLNETGFNSKVHSNTVGEASAIKMCRSVMIKGLEALTAECLSAARQYGVEKEVLASLHASFPSLGWDGPFPHYLISRIAEHGKRRAEEMREVVKTLEDVGVAPNLSRGTVLAQQGLVDALAAKGIRYTDLEPFDWGRTVDLLRK
>NC_017047.1|WP_015690082.1|2936274_2937399_+|4-oxalomesaconate-tautomerase
MPQTRIPCLLMRGGTSKGAFFLADDLPHEQALRDNVLLAVMGSPDPRQIDGLGGADPLTSKVAIIRPSARPDADVDYLFAQVNVDKAVVDYGQNCGNILAAVGPFAIERQLLSAVEGITPVRIFMENTGQIATAHVPVKDAQVCYQGELRIDGVPGTAAKISVEFADIAGSSCGALLPTGNARDTFDGIDVTCIDNGMPVILLRAADFGCSGYESREQLDADTELKKRLESIRLQAGPKMKLGDVTQRTVPKMTLIAEPRNGGAISSRTFIPHRCHASIGVLGAVSVASACLIPGSITEGLAHTPSGNTPLISVEHPAGEFSVELQLDPTKTGAERLAGCALLRTARLIFEGRVAIPASIWDGHQDDQQGSHHE
>NC_017047.1|WP_013575974.1|2935539_2936265_+|4-carboxy-4-hydroxy-2-oxoadipate-aldolase/oxaloacetate-decarboxylase
MSLVGKKGVVVRHIPRANKADVSALAAFGVATVHEAQGRKGLLDAGIRPIQQDCAISGSAVTVLTAPGDNWMFHVAVEQCQPGDILVVAPTSPCSDGFFGDLLATSLKARGVVGLIADLGVRDTKTLRDMGFRVWSRAVHAQGTIKETLGSVNVPVVCAGQLVNPGDAIVADDDGVVVIPRQEVAQVAQASREREALEESKRARMADGELGLDIYNMRPRLAEKGLKYFDSLEELENAARR
>NC_017047.1|WP_013575973.1|2934796_2935543_+|4-oxalmesaconate-hydratase
MTQPKKENTKSALVVSAHSADFVWRAGGAIARHTQAGYAVHIVCLSFGERGESAKLWRKGNMTEEVVKASRREEAMAAAEILGASVEFFDMGDYPLRADKESLFRLADVYRRVQPHFVLTHSLKDPYNYDHPMATHLAQEARIIAQAEGYKPGETIVGAPPVYCFEPHQPEQCDWKPDVLLDITDVWDKKYQAIQCMAGQEHLWEYYTRVAQQRGVQAKRNVGITSTKNIVYGEGYQSLFPRVTEDLA
>NC_017047.1|WP_013575972.1|2933415_2934645_-|LysR-family-transcriptional-regulator
MAESEMLSNLMQIRAFCQVVDQGSVSRAADELYRTQSAVTRAIRDLEQSLDVPLFERHANGMLLTDFGKCVLPRARRAIAELRQIPSQLAKLQGKSGQRRGDTEPLYLFNVRRLQIFISLCKTRHMQTVATLLGLSQPAVSAALKVLENGAGVALLERTPHGMMPSLAGQDIVPNLRRALNELRHIPADIAARRGVLEGTVQVGALPLGRTRLLPQAIIGLTQRYSGVKVVTNESAFSALASELRSGEVDFIFGALRSRDYAADMATETLFTESMVILARKGHPLLAENVTQETLREARWVLPRAETPARHLLDNSFAAMGIPPPDPVVESGDLGIVRGLLLGSDMLAAVSARQLEHELESGELVKLPLDLADTHRAIGLTFRAGSLLSPAAEALVMEIRKVCGNPIFI
>NC_017047.1|WP_015690081.1|2931941_2933054_-|glycosyltransferase
MITKEKEVINKKKIVLVTDLLIGRGGMENVTSQVISALKKSEEFEAGFFVINSGEKTYSKSWLDNAVLFESVCTLRNKKVKNFIHTLRLLLFIRKYKPEHVITLNTIPSLMARRAITFSAHKTVLSTWMHLPPRERYRPHYLLSADHHFAISDEIKNQLTELGVDKNNVDVVFNPVKKTDTVILRPESLRILYIGRIHFERQKQLKDLFDSLARVNVRWSLDIVGDGEDLAICQSYTQQSGISDQITWHGWQSDPWEYVENNIKEVTCLVMTSNFEGFPLVLLEAISRGIYCVSSDCISGPSEIIENNINGQLYPQNDIIRLSQIINKIGSDRVLPEQAVIKESIGKFYEDAYMNNFKNILNKIAEGKDE
>NC_017047.1|WP_015690080.1|2930695_2931949_-|O-antigen-ligase-family-protein
MNSKSATAPLKIIVNASVIALCISLSLSMFITGWPQKIFYVVSYVSFFTTLYAIYKKDISFKNEHFYLVMFFSLFFLAAVRFVWAMMLKHNGIDPSPTSAGIINNYLVGSKRILLGAFVILCLSVYGSLTTQKTIFLSKVIIVLGLIVTLGFGLHEHFYTVNDRIKLTTDAASMSSYMIIFIYAAYLGLSRLENHRYSKCLDLGAFILTFILLYLCGTRITILALIFLKLTFIFLEYKIDLRKNWQMAGLVVLAIVTIIGITGHRWAQGINDIQKYDVQSSTSLGARVAIWESGIYLLHHHIGFTTPDERTTLARAFIKTHHPENTEGYTNVQYNMHNEFLEVTTLQGLLGTFSLLLPYLVLIYGWVRKVNIKGMVLPFIALFVTGLTDSVILYDQTATLFVISLAVCCIGTRKSAE
>NC_017047.1|WP_015690079.1|2930183_2930624_+|type-II-3-dehydroquinate-dehydratase
MNYNIAVFNGPNLNLLGTREPETYGHDTLATIEKLCHQTGENCGAKIEFFQTNHEGDLIDRIQACRGKVDAIVLNAAAWTHTSVAIRDAVTAVSLPLYEVHITNVHKRDAFRHHSFLSDVAVGVICGFGIQGYEYAIRQAVVNLNK
>NC_017047.1|WP_013575968.1|2929333_2930167_+|amidohydrolase-family-protein
MTIFEQPKIDTHHHVFDPARFPYLPDTPYRPEGHEIGTTEYYRAVMQAYNIRHSLIVGPTSGYNTDSACLLDALQKGNGRFKGIAVVPFDIGIEQLANLKNAGVVGIAMNVAMLGTESFLHLDGLMGRLAELDMFAAIQVQNDQLLALLPLINRTRTRLLIDHSGRPDVTQGLQQPAFQALLSLADQQRAWVKLSGLAKFSRQPFPYQDGHAYQHALLDAFGAEHCMWGSDWPFLRAEHRMDLGTLLMLVGQLFPDEKIRQQILWQTPKDLFGFTDY
>NC_017047.1|WP_015690078.1|2928074_2929337_+|gallate-dioxygenase
MAKIIGGLAVSHTPTIGFAVDHNKQEESAWAPIFESFAPMQKWLDEKKPDVLVYIFNDHVTSFFFDHYSAFTLGIDEQYEVADEGGGPRDLPAVKGHAALSQHIGASLMADEFDMSFFQDKPLDHGLFSPLSALLPHEGGWPTQIVPLQIGVLQFPIPTARRCYKLGQALRRAIESFPEDLNVAIVATGGVSHQVHGERCGFNNPDWDEQFVDMIVNDPERLTEMTLAEFATLGGMEGAEVIMWLVMRGALSANVKKLHQAYYLPSMTGIATLILENQSREAPYDVQQRQRDKIAQQMAGVEKLPGTYPFTQARSLKALRINRFLHRLIQPAWRERFLTDQHALFAENKLTDEEQQLLRELDWRGMIHYGVSFFLLEKLGAVVGVSNLHIYSAMRGETLEEFQKTRNQQVLYSVAGKAKA
>NC_017047.1|WP_015690084.1|2939506_2940535_-|ABC-transporter-ATP-binding-protein
MTEQSQAPVLEIDNLQLVFPVYGGEVKALNQVSLSVNAGEIVGVVGESGSGKSVTAMMAMRLLPPDGFTVTGGALRMLGTDVIHASEEQMRTLRGARVAMIFQEPMNALNPTRKIGRQMCEVICLHQKLSKAQAWQKAIGLLQDMQIADAEQVMSRYPFELSGGMRQRVLIAMAFSCEPELIIADEPTTALDVTVQRQVLRLLQRKARASGTAVLFITHDMAVVSQLCDRVYVMYAGHVIESGNTTDVIDTPSHPYSIGLLQAAPENGEPRSLLKAIPGTVPNLAKLPQGCAFRGRCNHADDRCIATPALASLPHFPQQSVACWHPQRHAGEIHIQRIEEHS
>NC_017047.1|WP_013575979.1|2940536_2941448_-|D,D-dipeptide-ABC-transporter-permease
MSVIEPGVNNHRADIVAPDVKPRFANWRRTFYLLSRSPLTMLGLAIMLIVLFIMIFSPWLVPHDPNAISLTDRLQAPSALHWFGTDEVGRDLFSRVLIGSQQSVAAGLAVVIIAGTTGSLLGCFSGVVGGVVDALIMRCMDIMLSVPSLVLTMALAAALGPSLFNAMLAIAVVRIPFYVRLARGQTLMLRHQAYMQATRTFGASRWHLITWHVLRNVMPPLVVQASLDIGTSILMAATLGFIGLGAQQPTAEWGAMVSNGRNYILDQWWYSAFPGVAILITATGFNLFGDGLRDLLDPKSRGR
>NC_017047.1|WP_015690085.1|2941452_2942469_-|ABC-transporter-permease
MTFWTLIRQRCWGLILVMAGVCVITFIISHMIPGDPARLLAGDRASNEMVEHIREQLGLNQPLYVQFFRYVSDLLHGDLGTSIRTGRPVLEDLKAFFPATLELAVSALFLAIVLGIPLGVLSAVYRNKFPDHLVRLLSVLGISTPAFWLGLGVIILFYGHLNLLPGGGRLDDWMDPPANITGFYVLDSLLTGNRDAFWNSLQHLAMPALTLAFVHMGIVARQIRSAMLEQLSEDYIRTARANGLSRWRVILSHALPNALIPSVTVLGLAMGDLLYGAVLTETVFAWPGMGAYVVNSIQALDFPAVMGFAVVVSFAYVIVNLCVDLLYVWIDPRIGREG
>NC_017047.1|WP_013575981.1|2942530_2944111_-|ABC-transporter-substrate-binding-protein
MSNTAINTFRKNTKTQVAGAIFLALSGLSFATQAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPAYQRLVQYKTEDGKGSTQVEGDLAASWTASPDQLIWTFKLKPGAKFDDGSDVNADAVKWSFERLMKIGQGPSEAFPKDMTVTVVDPMTVTFTLKTPFAPFLYTLANDGAGIVNPAIAKANPADEGKAWLAGHTAGSGPYKLDRWQKGQQLVLVPNPHYSGAKPAFKRVTVKIIGESATRRLQLSRGDLDIADSLPMDQLAALKKENKVAVEEFPSLRVTYLYLNNGKTPLNQVDLRRAISSAVDYQGMVKGILGGNAKQMRGPIPDGMWGFDPTAKQYTLDLTQAKADLEKVKDKPQTLDFLYSDNDPNWESIALSVQASLGQAGINVKLEKLANATMRDRIGQGDYDISIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYSNPDVDALLKKAVSVTDQKQRTDYYQQAQKIVIDEAAYVYLFQKNYQVAMNKDVKGFVFNPMLEQVFNVGQMHKQ
>NC_017047.1|WP_013575982.1|2944158_2944740_-|D-alanyl-D-alanine-dipeptidase
MNTKTPDVALIDLAEILPDAVIDLKYATADNLTGQPIYRESLCLLHPDAASALVRCNEVAKLAGFTLKIYDAYRPQAAQACLWAAFPNPDYVVDIRLGSHHSRGVAVDLTLLDEQGEAVDMGAGFDEMTEVSHPFYPDLPPHIQRNRLLLNAVMAAGGFKGITSEWWHFELPDAKTYPLLEERFGCYPPVNAA
>NC_017047.1|WP_013575983.1|2944768_2945641_-|MurR/RpiR-family-transcriptional-regulator
MQPAQDVIEQIEASFAGQTPTGKRIASYLLANLAQIPFETADSIARSAATSGISVGRYLRSLGYRNLDHFKQTLRLQSGTSYQPWVVTDRLGAYRERSKQPQQEKLQQSLTLELEAINHVYQLAQTDSFAQVSRRLADAEAVFILGIQSVRGIANNFSSYLEYLRPKVYFADGLSGTYVESLNSEFAQPYLVVTDTRAYSKMAQTYCEAACERGLNVALITDIYCPWARDYPVDLLQVKTDTGQFWDSMAPLSCLFNLLCSAVLELRGHDVEQRLANNRILQKQLGQFES
>NC_017047.1|WP_015690086.1|2946373_2948032_-|alpha-glucosidase
MANWWKEAVAYQIYPRSFKDSNRDGIGDINGITEKLDYLKDLGIDLIWICPIYQSPNDDNGYDISDYQQIMAEFGTMADFDHLLKQVHLRGMRLIIDLVVNHTSDEHPWFVESGSSLDNPKRDWYIWRDGKQGGEPNNWESIFNGSAWKHSAATGQYFLHLFSERQPDLNWENPGVRSAIYTMMRWWLDKGVDGFRIDAICHMKKEPAFSDMPNPQGLPYVPSFERHLNYDGLLDYVDDMCEQVLSRYDIVTVGEMNGVTAEQGEEWVGEQRGRLNMIFQFEHVKLWQDGQHTKAQSGLDLMGLKDIFTRWQTLLENKGWNALYVENHDLPRVVSGWGDAENYHRESATAIAAMYFLMKGTPFIYQGQELGMTNTHFASLDDFDDVAARKRASEMRRQGMEESDILAILSRTGRDNSRTPMQWDHSIHGGFSSVTPWFPANSNYREINVAQQREDNHSVLNFYRALIRLRRQMPALIEGNYQLLLPSHPHIYAYLRTLENQQILVIGNFSACPQEVDSQQLALEGAQLLLGNYQEEGALHILRPYETRIYQR
>NC_017047.1|WP_015690087.1|2948031_2949687_-|alpha-glucosidase
MSDMHSAQQWKDAVVYQVYPRSFMDSNGDGTGDLNGIISKLDYLQQLGINMLWLSPVYRSPMDDNGYDISDYENIADIFGSMAEMEHLIAEAEARDIGILMDLVVNHTSDEHPWFIDALTSKNSAYRDFYIWRKPAADGGPPNDQRSHFGGSAWTLDKASGEYYLHQFSTRQPDLNWENPDVRAAIHAMMNRWLARGIGGFRMDVIDLIGKDVDQQIMANGKNLHLYLHQMNRATFGPYGSITVGETWSATPEDALLYSAEARQELTMVFQFEHIRLFWDEHHGKWRNKPFDLLRFKAVIDKWQTALAHRGWNSLFWSNHDLPRAVSKFGDDGQYRIESAKMLATALHCLKGTPYIYQGEEIGMTNVRFPRIDDYRDIESLNLYQERVAEGVSHEEMMRGIHANGRDNARTPMQWDSSQHAGFTTSQPWIDVNPNYKQINVAAALDDPNSVFYHYQQLVALRKQQPLLVHGDFRQIFNSHPQVFAWLRTSGDQTLVVINNFTRELLTLDVPDNLQSLQGQCLISNYAPCEQLGARLQLQPYESFALLIGSL
>NC_017047.1|WP_037034544.1|2949709_2950819_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MAQLTLDKIQKRYGAKTEVIKSLDLHIKSGEFVVIVGPSGCGKSTLLRMIAGLEEISGGGMYIDGNYVNDDTPAERGIGMVFQSYALYPHMSVYQNMAFGLELARHPASEIDQRVRECARILQLEPLLARRPKDLSGGQRQRVAIGRAIVREPRLFLFDEPLSNLDASLRVQMRMEVSALHKRLGVTIIYVTHDQVEAMTLADRIVVLNQGNIEQVGTPLELYDQPANEFVAQFIGSPKMNLLPATLRQAGEQQSVVELDNGKALVLPVATPAAAQGRSVNLGIRPEHIRSGNREECEYQGEVMFVEQMGNETLLYLDNGNASEPWVVRHAERSAIQVGEIVGVRLPVERCYLFDSHGRAFHRHLTMNH
>NC_017047.1|WP_015690089.1|2950881_2952243_-|alpha-glucosidase
MATKIVLVGAGSAQFGYGTLGDIFQSTALYGSEIVLHDINPASLAVTEKTARDFLAKEDLPFIVSATTDRATALRGAGFVIISIEVGDRFALWDLDWQIPQQYGIQQVYGENGGPGGLFHALRIIPPILDICADVANICPDAWIFNYSNPMSRICTTVHRAFPELNFVGMCHEIASLERYLPEMLGTSFDNLNLRSGGLNHFSVLLEARYKDSGKDAYADVRAKAPDYFATLPGYSDILAYTRSHGKWVETEGSTERHALGGKDSSYPWADRTLFKEILEKFHHLPITGDSHFGEYISWAGEVSDHRGILDFYTFYRNYLGEVQPKIELKLKERVVPVIEGILTDSGYEEAAVNIPNRGFIKQLPAFIAVEVPAIIDRKGVHGIKIDVPAGIGGLLSNQVAIHDLTAEAILEGARDLVIQALLVDPVNNKCRAIPELVDVMISRQSPWLNYLK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017047_1	1.1\|1948946\|31\|NC_017047\|PILER-CR	1948946-1948976	31	NZ_CP044989	Deinococcus sp. AJ005 plasmid p380k, complete sequence	195299-195329	6	0.806
NC_017047_1	1.1\|1948946\|31\|NC_017047\|PILER-CR	1948946-1948976	31	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	87970-88000	6	0.806
NC_017047_1	1.1\|1948946\|31\|NC_017047\|PILER-CR	1948946-1948976	31	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	741215-741245	7	0.774
NC_017047_1	1.1\|1948946\|31\|NC_017047\|PILER-CR	1948946-1948976	31	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	1475856-1475886	7	0.774
NC_017047_1	1.1\|1948946\|31\|NC_017047\|PILER-CR	1948946-1948976	31	NZ_CP051294	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence	174869-174899	8	0.742
NC_017047_1	1.1\|1948946\|31\|NC_017047\|PILER-CR	1948946-1948976	31	NZ_CP033363	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence	174869-174899	8	0.742
NC_017047_1	1.1\|1948946\|31\|NC_017047\|PILER-CR	1948946-1948976	31	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	19668-19698	8	0.742

1. spacer 1.1|1948946|31|NC_017047|PILER-CR matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 6, identity: 0.806

cgcctttaaacgcagcgccgcatccggcggg	CRISPR spacer
cgcctggaaacgcagcgccgcatcgaacgcg	Protospacer
*****  ***************** ..** *

2. spacer 1.1|1948946|31|NC_017047|PILER-CR matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.806

cgccttt-aaacgcagcgccgcatccggcggg	CRISPR spacer
-gcgttcgaagcgcagcgccgcatccagcggc	Protospacer
 ** **. **.***************.****

3. spacer 1.1|1948946|31|NC_017047|PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 7, identity: 0.774

cgccttta-aacgcagcgccgcatccggcggg	CRISPR spacer
-accagcatgacgcggcgccgcatccggcggg	Protospacer
 .**  .* .****.*****************

4. spacer 1.1|1948946|31|NC_017047|PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 7, identity: 0.774

cgccttta-aacgcagcgccgcatccggcggg	CRISPR spacer
-accagcatgacgcggcgccgcatccggcggg	Protospacer
 .**  .* .****.*****************

5. spacer 1.1|1948946|31|NC_017047|PILER-CR matches to NZ_CP051294 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence) position: , mismatch: 8, identity: 0.742

cgcctttaaacgcagcgccgcatccggcggg	CRISPR spacer
gatccgtaaaggcagcgccgcatccggccag	Protospacer
 ..*. **** ***************** .*

6. spacer 1.1|1948946|31|NC_017047|PILER-CR matches to NZ_CP033363 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence) position: , mismatch: 8, identity: 0.742

cgcctttaaacgcagcgccgcatccggcggg	CRISPR spacer
gatccgtaaaggcagcgccgcatccggccag	Protospacer
 ..*. **** ***************** .*

7. spacer 1.1|1948946|31|NC_017047|PILER-CR matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 8, identity: 0.742

cgcctttaaacgcagcgccgcatccggcggg	CRISPR spacer
gaccttcgaacgcagcgccgcatccttcgac	Protospacer
 .****..*****************  **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

650909 : 757788

Erwinia_phage(25.0%)

plate,lysis,tail,tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013576736.1\|650909_652232_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_013573984.1\|652354_653926_-	galactarate dehydratase	NA	NA	NA	NA
WP_015689387.1\|654477_655821_+	MFS transporter	NA	NA	NA	NA
WP_013573986.1\|655881_656652_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA
WP_013573987.1\|656689_657574_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA
WP_013573988.1\|657694_658834_+	glycerate kinase	W6LM47	Streptococcus_phage	6.9e-48	40.5
WP_015689388.1\|658951_660259_+	amino acid deaminase	NA	NA	NA	NA
WP_013573990.1\|660306_663057_-	two-component sensor histidine kinase BarA	A0A1V0SGX0	Hokovirus	4.1e-54	30.2
WP_013573991.1\|663120_664491_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	3.9e-37	27.2
WP_013573992.1\|664500_666738_+	GTP diphosphokinase	NA	NA	NA	NA
WP_013573993.1\|666816_667620_+	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_013573994.1\|667968_669606_+	CTP synthase (glutamine hydrolyzing)	A0A1J0FA14	Only_Syngen_Nebraska_virus	7.9e-154	51.3
WP_013573995.1\|669681_670986_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	1.1e-126	57.1
WP_013575039.1\|671107_672430_+\|transposase	IS4-like element IS1271 family transposase	NA	NA	NA	NA
WP_173362080.1\|672497_673298_-	SIS domain-containing protein	NA	NA	NA	NA
WP_013573998.1\|673502_675056_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_173362081.1\|675064_675751_+	putative N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_013574000.1\|675852_676524_+	7-carboxy-7-deazaguanine synthase QueE	A0A2I7S8X1	Vibrio_phage	1.2e-12	35.8
WP_013574001.1\|676537_676897_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_013574002.1\|677066_678071_+	hypothetical protein	NA	NA	NA	NA
WP_013574003.1\|678416_680219_+	NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA	NA	NA	NA
WP_013574004.1\|680246_681983_+	assimilatory sulfite reductase (NADPH) hemoprotein subunit	NA	NA	NA	NA
WP_013574005.1\|682007_682745_+	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_013574006.1\|682904_683942_-	aminopeptidase	NA	NA	NA	NA
WP_013574007.1\|684193_685618_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_013574008.1\|685628_686537_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_013574009.1\|686550_687978_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	4.6e-33	27.6
WP_013574010.1\|687979_688603_+	adenylyl-sulfate kinase	A0A1B0XTK9	Freshwater_phage	1.1e-07	39.1
WP_173362082.1\|688737_689043_+	DUF3561 family protein	NA	NA	NA	NA
WP_013574012.1\|689210_689531_+	cell division protein FtsB	NA	NA	NA	NA
WP_013574013.1\|689533_690253_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_013574014.1\|690252_690726_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_041673186.1\|690748_691795_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_013574016.1\|691775_692540_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.8e-69	53.7
WP_013574017.1\|692529_693156_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.2e-37	51.2
WP_013574018.1\|693398_694421_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	2.2e-05	35.2
WP_013574019.1\|694472_695459_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	7.1e-33	33.1
WP_013574020.1\|695557_698113_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.9e-25	20.4
WP_013574022.1\|701308_702412_+	lytic murein transglycosylase B	NA	NA	NA	NA
WP_013574023.1\|702573_703068_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.7e-27	48.7
WP_013574024.1\|703175_704240_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.2e-111	61.6
WP_173362083.1\|704483_705050_+	recombination regulator RecX	NA	NA	NA	NA
WP_015689392.1\|705188_707816_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.1e-79	38.5
WP_013574027.1\|708072_708258_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_013574028.1\|709289_709856_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_013574029.1\|709852_710281_+	DedA family protein	NA	NA	NA	NA
WP_013574030.1\|710366_711938_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_013574031.1\|712095_712611_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_013574032.1\|712680_713970_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_015689394.1\|713986_714778_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_013574034.1\|714942_716304_+	signal recognition particle protein	NA	NA	NA	NA
WP_015689395.1\|716482_716731_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_013574036.1\|716749_717298_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_015689396.1\|717365_718139_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_013574038.1\|718187_718535_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_013574039.1\|718627_718807_-	ogr/Delta-like zinc finger family protein	F1BUT0	Erwinia_phage	6.4e-17	75.5
WP_015689397.1\|718871_719972_-\|tail	tail protein	Q6K1G4	Salmonella_virus	4.4e-84	43.6
WP_015689398.1\|719974_720445_-\|tail	phage tail protein	U5N3F6	Enterobacteria_phage	1.7e-37	50.0
WP_015689399.1\|720441_722073_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	2.6e-11	33.1
WP_013574043.1\|722065_722200_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	6.7e-11	78.9
WP_013574044.1\|722220_722508_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	4.3e-23	60.9
WP_015689401.1\|722567_723077_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.0e-63	67.8
WP_013574046.1\|723091_724261_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	8.4e-182	80.5
WP_013574047.1\|724431_725391_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	1.7e-119	68.5
WP_013574048.1\|725380_725995_-\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.7e-80	70.9
WP_013574049.1\|725987_726896_-\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	1.5e-117	73.5
WP_013574050.1\|726901_727252_-	GPW/gp25 family protein	F1BUP4	Erwinia_phage	9.9e-38	63.8
WP_013574051.1\|727248_727890_-\|plate	phage baseplate assembly protein V	A0A0F7LBP2	Escherichia_phage	6.4e-67	60.4
WP_013574052.1\|727971_728433_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.1e-23	43.3
WP_013574053.1\|728525_728954_-\|lysis	lysis regulatory protein	F1BUQ1	Erwinia_phage	1.9e-06	48.3
WP_013574054.1\|728954_729464_-	lysozyme	A0A218M4K3	Erwinia_phage	1.5e-55	61.1
WP_013574055.1\|729444_729666_-	hypothetical protein	NA	NA	NA	NA
WP_013574056.1\|729656_729860_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	8.6e-18	56.7
WP_013574057.1\|730071_730266_-	hypothetical protein	NA	NA	NA	NA
WP_013574058.1\|730414_732307_-	replication endonuclease	Q7Y4B8	Escherichia_virus	4.8e-179	50.5
WP_013574059.1\|732400_732622_-	TraR/DksA C4-type zinc finger protein	A0A1S6L007	Salmonella_phage	4.6e-09	44.3
WP_013574060.1\|732621_732897_-	DUF5347 family protein	NA	NA	NA	NA
WP_013574061.1\|733029_733620_+	helix-turn-helix domain-containing protein	Q6K1G0	Salmonella_virus	1.8e-52	51.3
WP_013574062.1\|733908_734985_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B6VT43	Edwardsiella_phage	3.9e-85	48.3
WP_013574063.1\|734991_736113_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_013574064.1\|736190_737345_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_013574065.1\|737655_738000_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_013574066.1\|738281_739016_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_013574067.1\|739146_740124_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_013574068.1\|740123_740861_+	polyphenol oxidase	NA	NA	NA	NA
WP_013574070.1\|749506_750805_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.9e-42	30.3
WP_013574071.1\|750994_752350_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_013574072.1\|752434_755155_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_013574073.1\|755186_755891_-	DTW domain-containing protein	NA	NA	NA	NA
WP_013574074.1\|756020_756440_-	thioredoxin TrxC	A0A191VYI2	Roseobacter_phage	4.5e-13	34.4
WP_013574075.1\|756684_757788_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_2

1527764 : 1627203

Escherichia_phage(31.58%)

plate,head,lysis,tail,portal,integrase,capsid,terminase,tRNA,protease,transposase

attL 1539340:1539357|attR 1578326:1578343

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013574769.1\|1527764_1528085_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.1e-14	46.1
WP_013574770.1\|1528112_1530395_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.7e-167	41.9
WP_002211347.1\|1530616_1530835_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_015689576.1\|1530928_1531663_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_015689577.1\|1531714_1533436_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A1V0SJ29	Klosneuvirus	1.0e-18	32.1
WP_013574773.1\|1533438_1535205_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.4e-25	24.6
WP_015689578.1\|1535353_1536322_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.7e-63	45.1
WP_013574775.1\|1537054_1537549_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_015689579.1\|1537669_1541116_+	DNA translocase FtsK 4TM domain-containing protein	A0A218M9A2	Mycobacterium_phage	9.3e-88	48.8
1539340:1539357	attL	NA	NA	NA	NA
WP_013574777.1\|1541310_1541922_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_013574778.1\|1541929_1543273_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	5.8e-78	38.7
WP_013574779.1\|1543379_1544672_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.2e-93	43.8
WP_013573449.1\|1544789_1545794_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013574780.1\|1546224_1548681_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.1e-214	48.3
WP_013574781.1\|1548757_1551205_+	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.4e-215	49.3
WP_013574782.1\|1551216_1551834_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.3e-77	60.1
WP_013574783.1\|1551835_1552693_+	dimethyl sulfoxide reductase anchor subunit family protein	NA	NA	NA	NA
WP_013574784.1\|1552762_1553371_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	4.4e-25	36.8
WP_013574785.1\|1553370_1553943_+	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_013574786.1\|1554076_1555222_+	MFS transporter	NA	NA	NA	NA
WP_015689580.1\|1555327_1556068_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	9.5e-22	26.8
WP_015689581.1\|1556165_1557152_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LA05	Escherichia_phage	6.7e-148	76.5
WP_013574789.1\|1557254_1557554_-	helix-turn-helix transcriptional regulator	Q1JS29	Enterobacteria_phage	3.9e-35	70.7
WP_015689582.1\|1557660_1558035_+	hypothetical protein	Q1JS28	Enterobacteria_phage	8.4e-35	65.5
WP_013574791.1\|1558213_1558714_+	hypothetical protein	A0A0F7LBQ6	Escherichia_phage	7.7e-60	63.9
WP_015689583.1\|1558773_1559016_+	DUF2732 domain-containing protein	S4TP68	Salmonella_phage	4.6e-10	56.7
WP_013574793.1\|1559015_1559234_+	TraR/DksA family transcriptional regulator	A0A0F7LDI3	Escherichia_phage	3.0e-16	54.9
WP_015689584.1\|1559236_1559515_+	DUF5405 family protein	A0A0M4R2Q0	Salmonella_phage	5.6e-20	54.8
WP_015689585.1\|1559522_1561832_+	replication endonuclease	M1SV59	Escherichia_phage	7.5e-259	59.7
WP_015689586.1\|1561969_1563142_+	hypothetical protein	NA	NA	NA	NA
WP_015689587.1\|1564378_1565503_+	beta family protein	A0A0U2S621	Escherichia_phage	2.1e-134	63.3
WP_015689588.1\|1565462_1566041_-	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	7.3e-70	65.1
WP_015689589.1\|1566490_1567504_-\|portal	phage portal protein	A0A2I8TV74	Erwinia_phage	2.4e-140	70.0
WP_015689590.1\|1567505_1569275_-\|terminase	terminase ATPase subunit family protein	F1BUR2	Erwinia_phage	1.2e-267	77.5
WP_015689591.1\|1569439_1570285_+\|capsid	GPO family capsid scaffolding protein	Q6K1I7	Salmonella_virus	6.4e-99	64.9
WP_015689592.1\|1570329_1571430_+\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	3.7e-139	68.6
WP_015689593.1\|1571432_1572179_+\|terminase	terminase	A0A218M4L0	Erwinia_phage	2.2e-63	55.8
WP_041673199.1\|1572286_1572769_+\|head	head completion/stabilization protein	A0A0F7LDJ1	Escherichia_phage	3.4e-44	63.5
WP_015689595.1\|1572768_1572972_+\|tail	tail protein X	M1RZ22	Escherichia_phage	2.6e-22	76.1
WP_015696635.1\|1572974_1573184_+	hypothetical protein	B6SD15	Bacteriophage	2.0e-06	45.6
WP_015689597.1\|1573167_1573677_+	lysozyme	A0A218M4K3	Erwinia_phage	1.8e-64	69.6
WP_015689598.1\|1573673_1574096_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	9.8e-16	40.1
WP_015689600.1\|1574185_1574653_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	5.5e-52	64.5
WP_015689601.1\|1574645_1575095_+	phage virion morphogenesis protein	O80313	Escherichia_phage	5.5e-49	68.0
WP_015689602.1\|1575237_1576779_+	TIR domain-containing protein	NA	NA	NA	NA
WP_015689603.1\|1576878_1577520_+\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	5.2e-77	70.8
WP_015689604.1\|1577537_1577888_+	GPW/gp25 family protein	F1BUP4	Erwinia_phage	1.0e-34	62.1
WP_015689605.1\|1577892_1578801_+\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	5.4e-120	74.8
1578326:1578343	attR	NA	NA	NA	NA
WP_015689606.1\|1578793_1579324_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	1.1e-77	77.1
WP_015689608.1\|1581652_1582171_+\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	3.0e-22	40.8
WP_167539523.1\|1582323_1582467_+	hypothetical protein	NA	NA	NA	NA
WP_015689609.1\|1582613_1583801_+\|tail	phage tail sheath protein	A0A218M4J6	Erwinia_phage	2.5e-189	83.3
WP_015689610.1\|1583812_1584331_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.8e-75	80.2
WP_015689611.1\|1584385_1584682_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.2e-23	64.0
WP_015689612.1\|1584714_1584837_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.9e-12	82.1
WP_015689613.1\|1584826_1587280_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	8.9e-210	64.3
WP_015689614.1\|1587293_1587758_+\|tail	phage tail protein	S4TUC3	Salmonella_phage	1.0e-50	65.5
WP_015689615.1\|1587754_1588918_+	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	1.9e-162	75.8
WP_015689616.1\|1589000_1589219_+	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	6.2e-22	62.5
WP_013574828.1\|1589635_1591918_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.1e-156	40.9
WP_015689617.1\|1591993_1592851_-	formate transporter FocA	NA	NA	NA	NA
WP_015689618.1\|1593349_1595113_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_013574831.1\|1595438_1596524_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	4.4e-84	46.1
WP_013574832.1\|1596628_1597912_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_013574833.1\|1598108_1598807_+	(d)CMP kinase	NA	NA	NA	NA
WP_015689619.1\|1598963_1600637_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_013574835.1\|1600697_1600982_+	integration host factor subunit beta	A7KV42	Bacillus_phage	7.1e-10	40.2
WP_013574836.1\|1601253_1603500_+	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA
WP_013574837.1\|1603538_1605287_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	1.3e-56	29.4
WP_013574838.1\|1605283_1606273_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_013574839.1\|1606622_1606832_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	4.7e-19	68.8
WP_013574840.1\|1607093_1607306_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	3.0e-05	42.6
WP_013574841.1\|1607401_1608625_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_013574842.1\|1609006_1609189_+	hypothetical protein	NA	NA	NA	NA
WP_013574843.1\|1609185_1609944_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_013574844.1\|1610139_1611033_+	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_013574845.1\|1611034_1611814_-	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_013574846.1\|1611969_1612755_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_013574847.1\|1612751_1614074_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_013574848.1\|1614054_1614786_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_013574849.1\|1614782_1619231_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_013574850.1\|1619592_1621443_+	L,D-transpeptidase	NA	NA	NA	NA
WP_013574851.1\|1621622_1622174_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	4.9e-07	32.6
WP_013574852.1\|1622225_1622873_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_013574853.1\|1622958_1624149_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_121019630.1\|1624390_1625500_-	porin OmpC	Q1MVN1	Enterobacteria_phage	5.3e-109	57.0
WP_013574855.1\|1625802_1627203_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	1.4e-82	36.9

DBSCAN-SWA_3

1904435 : 1979915

Enterobacteria_phage(21.74%)

lysis,tail,holin,integrase,terminase,protease

attL 1900835:1900852|attR 1974689:1974706

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1900835:1900852	attL	NA	NA	NA	NA
WP_015689710.1\|1904435_1905581_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	3.9e-83	45.9
WP_015689711.1\|1905561_1905819_-	hypothetical protein	NA	NA	NA	NA
WP_167539526.1\|1905862_1906027_-	hypothetical protein	NA	NA	NA	NA
WP_015689712.1\|1906626_1906914_+	hypothetical protein	NA	NA	NA	NA
WP_015689713.1\|1906910_1907213_-	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	2.3e-14	53.8
WP_015689714.1\|1907376_1908024_-	helix-turn-helix domain-containing protein	A0A1W6JP50	Morganella_phage	2.2e-54	59.0
WP_015689715.1\|1908130_1908328_+	helix-turn-helix domain-containing protein	A0A1W6JP24	Morganella_phage	4.6e-16	59.7
WP_015689716.1\|1908353_1908860_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.9e-45	62.3
WP_015689717.1\|1909044_1909221_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_015689718.1\|1909217_1910228_+	conserved phage C-terminal domain-containing protein	U5P0A0	Shigella_phage	5.6e-33	74.8
WP_015689719.1\|1910224_1910767_+	phage N-6-adenine-methyltransferase	A0A1W6JP96	Morganella_phage	1.6e-58	64.2
WP_015689721.1\|1910915_1911290_+	RusA family crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	1.7e-32	57.9
WP_041673087.1\|1911304_1912000_+	phage antirepressor KilAC domain-containing protein	G0ZND1	Cronobacter_phage	5.0e-57	54.2
WP_015689723.1\|1911996_1913010_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.8e-71	40.4
WP_015689724.1\|1913026_1913380_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.1e-39	66.4
WP_167539527.1\|1913609_1913777_+	hypothetical protein	NA	NA	NA	NA
WP_167539528.1\|1913809_1916962_-	metallophosphoesterase	NA	NA	NA	NA
WP_015689726.1\|1917351_1917540_+	hypothetical protein	NA	NA	NA	NA
WP_015689727.1\|1917648_1918029_+\|holin	phage holin family protein	F1C592	Cronobacter_phage	1.2e-31	55.5
WP_015689728.1\|1918015_1918303_+\|holin	phage holin family protein	G8C7V9	Escherichia_phage	1.5e-12	37.4
WP_015689729.1\|1918299_1918926_+	glycoside hydrolase family 19 protein	F1C5D2	Cronobacter_phage	4.2e-71	63.2
WP_041673210.1\|1918963_1919470_+\|lysis	lysis protein	A0A0H4IT10	Shigella_phage	8.2e-09	35.3
WP_167539529.1\|1919480_1919654_+	hypothetical protein	NA	NA	NA	NA
WP_013577788.1\|1920648_1921137_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	4.1e-66	80.2
WP_015689731.1\|1921136_1923239_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	2.7e-311	72.6
WP_015689732.1\|1923235_1923454_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.6e-17	67.1
WP_015689733.1\|1924977_1926936_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	1.3e-275	73.9
WP_015689734.1\|1927020_1927347_+	DUF2190 family protein	K7PJY3	Enterobacterial_phage	5.1e-28	60.7
WP_015689735.1\|1927339_1927615_+	hypothetical protein	K7PH55	Enterobacterial_phage	1.3e-16	53.8
WP_014416515.1\|1927625_1928180_+\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	4.1e-54	59.9
WP_015689736.1\|1928176_1928581_+\|tail	tail protein	K7PHM6	Enterobacterial_phage	3.7e-44	61.4
WP_015689737.1\|1928588_1929326_+	Ig-like domain-containing protein	M9NYX0	Enterobacteria_phage	1.2e-88	68.9
WP_015689738.1\|1929336_1929744_+\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	5.2e-22	43.5
WP_015689739.1\|1929764_1930079_+\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	6.0e-26	55.3
WP_193427807.1\|1930263_1932390_+\|tail	phage tail tape measure protein	A0A2D1GPC9	Escherichia_phage	6.1e-138	42.2
WP_015689741.1\|1932425_1932767_+\|tail	phage tail protein	E4WL34	Enterobacteria_phage	1.1e-41	69.4
WP_015689742.1\|1932977_1933715_+\|tail	phage minor tail protein L	M9NYX1	Enterobacteria_phage	4.4e-120	80.8
WP_015689743.1\|1933717_1934437_+	C40 family peptidase	M9NZD8	Enterobacteria_phage	3.0e-105	72.3
WP_015689744.1\|1934429_1935047_+\|tail	tail assembly protein	K7PH59	Enterobacterial_phage	2.9e-77	71.7
WP_015689745.1\|1935101_1938299_+	host specificity protein J	E4WL39	Enterobacteria_phage	0.0e+00	63.4
WP_015689746.1\|1938299_1938614_+	hypothetical protein	E4WL40	Enterobacteria_phage	1.7e-09	36.0
WP_015689747.1\|1938615_1939290_+	hypothetical protein	A0A2P0WA07	Enterobacter_phage	6.4e-25	37.0
WP_015689748.1\|1939414_1939651_+	hypothetical protein	Q38624	Escherichia_phage	2.5e-21	61.8
WP_015689749.1\|1939709_1941221_+\|tail	tail fiber domain-containing protein	A0A1V0E5M2	Salmonella_phage	3.9e-38	56.0
WP_015689750.1\|1941284_1941674_+	hypothetical protein	NA	NA	NA	NA
WP_148267121.1\|1942880_1942979_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_015689751.1\|1943577_1944000_+	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	1.5e-32	54.4
WP_015689752.1\|1943999_1945265_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	5.1e-177	72.0
WP_015689755.1\|1946060_1947206_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_049804359.1\|1947654_1948128_-	ImmA/IrrE family metallo-endopeptidase	L7THB5	Pseudomonas_virus	5.3e-18	35.7
WP_015689757.1\|1948151_1948505_-	helix-turn-helix transcriptional regulator	L7TKV7	Pseudomonas_virus	4.2e-20	49.1
WP_013575146.1\|1949106_1950120_-	transcriptional regulator FtrA	NA	NA	NA	NA
WP_015689758.1\|1950234_1951710_+	MFS transporter	NA	NA	NA	NA
WP_013575148.1\|1951908_1952205_+	hypothetical protein	NA	NA	NA	NA
WP_013575149.1\|1952213_1952807_+	hypothetical protein	NA	NA	NA	NA
WP_013575150.1\|1952903_1954598_+	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	8.8e-15	29.6
WP_015689759.1\|1954719_1956390_+	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.1e-12	29.0
WP_013575152.1\|1956452_1957325_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_013575153.1\|1957324_1958374_+	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	6.1e-06	32.8
WP_013575154.1\|1958420_1958810_+	chemotaxis response regulator CheY	Q56AR1	Bacillus_thuringiensis_phage	1.0e-06	30.4
WP_013575155.1\|1958820_1959465_+	protein phosphatase CheZ	NA	NA	NA	NA
WP_013575156.1\|1959790_1960945_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_015689760.1\|1960937_1963022_+	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_015689761.1\|1963023_1963440_+	flagellar protein FlhE	NA	NA	NA	NA
WP_015689762.1\|1963926_1964322_-	hypothetical protein	NA	NA	NA	NA
WP_015689763.1\|1964314_1965754_-	PAAR domain-containing protein	A0A2H4JEI9	uncultured_Caudovirales_phage	1.3e-27	27.1
WP_015689764.1\|1965766_1966444_-	hypothetical protein	NA	NA	NA	NA
WP_015689765.1\|1966919_1967372_-	flagellar export chaperone FlgN	NA	NA	NA	NA
WP_013575161.1\|1967421_1967724_-	anti-sigma-28 factor FlgM	NA	NA	NA	NA
WP_013575162.1\|1967883_1968666_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_013575163.1\|1968779_1969190_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA
WP_013575164.1\|1969196_1969601_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA
WP_013575165.1\|1969612_1970317_+	flagellar hook assembly protein FlgD	NA	NA	NA	NA
WP_013575166.1\|1970394_1971639_+	flagellar hook protein FlgE	NA	NA	NA	NA
WP_013575167.1\|1971673_1972429_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA
WP_013575168.1\|1972450_1973233_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
WP_071823641.1\|1973360_1974065_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA
WP_013575170.1\|1974075_1975182_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA
1974689:1974706	attR	NA	NA	NA	NA
WP_013575171.1\|1975181_1976132_+	flagellar assembly peptidoglycan hydrolase FlgJ	Q9ZXE4	Bacillus_phage	4.5e-16	37.2
WP_013575172.1\|1976272_1977925_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA
WP_013575173.1\|1977952_1978915_+	flagellar hook-associated protein FlgL	NA	NA	NA	NA
WP_013575174.1\|1979219_1979915_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA

DBSCAN-SWA_4

3106679 : 3158744

Tupanvirus(22.22%)

tail,portal,capsid,terminase,tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015690152.1\|3106679_3109577_-\|tail	tail fiber domain-containing protein	H6X4Z1	Enterobacteria_phage	4.0e-07	32.2
WP_015690153.1\|3109589_3109985_-	hypothetical protein	NA	NA	NA	NA
WP_015690154.1\|3109984_3110293_-	hypothetical protein	NA	NA	NA	NA
WP_015690155.1\|3110295_3112092_-\|capsid	phage major capsid protein	Q6R4V3	Vibrio_virus	1.9e-31	26.6
WP_041673158.1\|3112045_3113530_-\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	2.5e-21	24.1
WP_148271874.1\|3113529_3114066_-	hypothetical protein	NA	NA	NA	NA
WP_148271884.1\|3114078_3115899_-\|terminase	phage terminase large subunit family protein	D6PFE7	uncultured_phage	1.4e-26	23.6
WP_015690159.1\|3116855_3117083_-	hypothetical protein	NA	NA	NA	NA
WP_148271885.1\|3117207_3117669_-	hypothetical protein	NA	NA	NA	NA
WP_148271875.1\|3118038_3118680_+	hypothetical protein	NA	NA	NA	NA
WP_148271886.1\|3118729_3119533_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_015690163.1\|3119617_3119827_-	hypothetical protein	NA	NA	NA	NA
WP_148271876.1\|3119906_3120263_-	hypothetical protein	NA	NA	NA	NA
WP_015690164.1\|3120921_3122331_-	hypothetical protein	NA	NA	NA	NA
WP_015690165.1\|3122382_3122937_-	HNH endonuclease	S6ANN8	Bacillus_phage	1.3e-10	40.4
WP_015690166.1\|3122993_3123143_-	hypothetical protein	NA	NA	NA	NA
WP_015690167.1\|3123548_3123869_-	hypothetical protein	NA	NA	NA	NA
WP_015690168.1\|3123841_3125575_-	recombinase family protein	G1D5I8	Mycobacterium_phage	2.1e-11	22.8
WP_013576118.1\|3125851_3126331_-	C40 family peptidase	A0A217EQL1	Bacillus_phage	4.4e-12	37.9
WP_015690171.1\|3126485_3126875_-	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF	NA	NA	NA	NA
WP_013576120.1\|3126871_3127204_-	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE	NA	NA	NA	NA
WP_013576121.1\|3127200_3128871_-	lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase	NA	NA	NA	NA
WP_013576122.1\|3128870_3129770_-	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase	NA	NA	NA	NA
WP_013576123.1\|3129783_3131766_-	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	A0A2K9KZK0	Tupanvirus	2.8e-20	24.6
WP_013576124.1\|3131765_3132746_-	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	A8CG95	Salmonella_phage	1.1e-33	32.7
WP_013576125.1\|3132745_3133888_-	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	A0A2K9L0G1	Tupanvirus	5.0e-30	28.9
WP_015690172.1\|3134235_3134985_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	7.1e-09	29.8
WP_013576128.1\|3135004_3135556_-	glutathione peroxidase	A0A1S7DMQ0	Molluscum_contagiosum_virus	9.2e-14	41.6
WP_013576129.1\|3135628_3136636_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_013576130.1\|3136789_3137188_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_004089944.1\|3137968_3138265_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.2e-13	40.0
WP_013576132.1\|3138269_3140657_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_013576133.1\|3140671_3141655_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	7.6e-35	38.5
WP_106120997.1\|3141829_3141874_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_013576134.1\|3142004_3142361_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_013576135.1\|3142403_3142601_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_013576136.1\|3142696_3143248_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	5.8e-16	33.7
WP_013576137.1\|3143251_3145180_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	5.7e-127	37.2
WP_013576138.1\|3145469_3146150_+	MarC family NAAT transporter	NA	NA	NA	NA
WP_153376299.1\|3146173_3146785_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_013576140.1\|3147131_3148001_+	fructosamine kinase family protein	NA	NA	NA	NA
WP_013576141.1\|3148106_3148655_-	YniB family protein	NA	NA	NA	NA
WP_013576142.1\|3148848_3149514_+	hexitol phosphatase HxpB	NA	NA	NA	NA
WP_013576143.1\|3149822_3150659_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_013576144.1\|3150737_3151499_+	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	2.7e-16	30.1
WP_013576145.1\|3151651_3152209_+	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	4.2e-06	34.2
WP_015690174.1\|3152398_3153790_+	L-cystine transporter	NA	NA	NA	NA
WP_013576147.1\|3153877_3154669_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_013576148.1\|3154908_3156306_+	MFS transporter	NA	NA	NA	NA
WP_013576149.1\|3156362_3157244_-\|protease	protease HtpX	NA	NA	NA	NA
WP_013573449.1\|3157739_3158744_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

3990076 : 4013634

Escherichia_phage(25.0%)

coat,protease,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_112197499.1\|3990076_3990343_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_013576908.1\|3990607_3991549_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015690389.1\|3991691_3992234_-	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	8.7e-57	57.2
WP_049804352.1\|3992256_3992703_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_015690391.1\|3993150_3995232_+	chitinase	Q4KT15	Chrysodeixis_chalcites_nucleopolyhedrovirus	2.9e-36	27.8
WP_015690392.1\|3995293_3996190_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015690393.1\|3996307_3997804_+	MFS transporter	NA	NA	NA	NA
WP_015690394.1\|3998218_3998779_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_013576915.1\|3998841_3999360_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_013576916.1\|3999368_3999914_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_015690395.1\|3999933_4000731_+	molecular chaperone	NA	NA	NA	NA
WP_015690396.1\|4000749_4003197_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_015690397.1\|4003193_4004162_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_013576920.1\|4004218_4004698_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_013576921.1\|4004807_4005461_-	DNA oxidative demethylase AlkB	A0A0H3Y8P5	Apricot_vein_clearing_associated_virus	7.1e-05	33.7
WP_013576922.1\|4005598_4006417_+	shikimate 5-dehydrogenase	NA	NA	NA	NA
WP_013576923.1\|4006478_4007816_-	glucarate dehydratase	NA	NA	NA	NA
WP_013576924.1\|4007844_4009188_-	glucarate dehydratase	NA	NA	NA	NA
WP_013576925.1\|4009184_4010558_-	MFS transporter	NA	NA	NA	NA
WP_013576926.1\|4010784_4011945_-	CdaR family transcriptional regulator	NA	NA	NA	NA
WP_013576927.1\|4012182_4013634_-\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	3.9e-27	30.7

DBSCAN-SWA_6

4034962 : 4075779

Erwinia_phage(46.88%)

plate,lysis,tail,portal,integrase,capsid,terminase,tRNA,head

attL 4045203:4045227|attR 4077555:4077579

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013576944.1\|4034962_4035838_+\|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	NA	NA	NA	NA
WP_013576945.1\|4035970_4037677_+	polynucleotide adenylyltransferase PcnB	G3MAR3	Bacillus_virus	1.0e-26	37.4
WP_013576946.1\|4037673_4038153_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_173362117.1\|4038158_4039517_-	two-component system sensor histidine kinase QseC	NA	NA	NA	NA
WP_013576948.1\|4039540_4040227_-	response regulator	NA	NA	NA	NA
WP_013576949.1\|4040385_4041180_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
WP_013576950.1\|4041194_4042049_+	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_013576951.1\|4042157_4042538_+	aspartate 1-decarboxylase	NA	NA	NA	NA
WP_013576952.1\|4042681_4043452_-	ABC transporter permease	NA	NA	NA	NA
WP_013576953.1\|4043451_4044375_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-21	31.3
WP_013576954.1\|4044510_4045167_+	carbonate dehydratase	NA	NA	NA	NA
4045203:4045227	attL	NA	NA	NA	NA
WP_015690409.1\|4045315_4046323_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	3.8e-114	58.2
WP_015690410.1\|4046398_4046698_-	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	8.7e-35	70.7
WP_015690411.1\|4046818_4047091_+	hypothetical protein	Q1JS60	Enterobacteria_phage	1.7e-32	70.3
WP_015690412.1\|4047101_4047266_+	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	6.1e-06	49.0
WP_041673243.1\|4047306_4047600_+	hypothetical protein	NA	NA	NA	NA
WP_015690414.1\|4047666_4047849_+	DUF2732 family protein	Q6K1F6	Salmonella_virus	3.2e-08	51.7
WP_015690415.1\|4047848_4048073_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	1.3e-11	47.9
WP_015690416.1\|4048152_4050321_+	replication endonuclease	S4TTC1	Salmonella_phage	4.0e-222	54.3
WP_015690417.1\|4050408_4051437_-	DUF2806 domain-containing protein	NA	NA	NA	NA
WP_015690418.1\|4052111_4052690_-	hypothetical protein	NA	NA	NA	NA
WP_015690419.1\|4052872_4053904_-\|portal	phage portal protein	F1BUR7	Erwinia_phage	6.7e-159	79.4
WP_015690420.1\|4053905_4055672_-\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	4.1e-273	77.9
WP_015690421.1\|4055816_4056668_+\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	3.3e-87	61.8
WP_015690422.1\|4056716_4057781_+\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	1.6e-142	73.7
WP_015690423.1\|4057792_4058449_+\|terminase	small terminase subunit	F1BUQ7	Erwinia_phage	1.0e-56	54.1
WP_015690424.1\|4058544_4059018_+\|head	head completion/stabilization protein	A0A0F7LDJ1	Escherichia_phage	2.8e-35	51.3
WP_015690425.1\|4059017_4059221_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	1.7e-18	65.7
WP_041673244.1\|4059226_4059436_+	hypothetical protein	F1BUQ4	Erwinia_phage	1.1e-07	50.0
WP_015690427.1\|4059416_4059926_+	lysozyme	A0A218M4K3	Erwinia_phage	1.1e-53	63.3
WP_015690428.1\|4059925_4060351_+\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	4.7e-26	48.2
WP_015690430.1\|4060446_4060914_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.1e-52	66.4
WP_015690431.1\|4060906_4061365_+	phage virion morphogenesis protein	F1BUP7	Erwinia_phage	3.8e-45	68.1
WP_041673245.1\|4061488_4061758_-	hypothetical protein	NA	NA	NA	NA
WP_015690433.1\|4062151_4062898_+	NYN domain-containing protein	NA	NA	NA	NA
WP_015690434.1\|4063310_4063784_+	hypothetical protein	NA	NA	NA	NA
WP_015690435.1\|4063948_4064845_+	hypothetical protein	NA	NA	NA	NA
WP_015690436.1\|4065062_4065704_+\|plate	phage baseplate assembly protein V	A0A0F7LBP2	Escherichia_phage	6.2e-70	63.2
WP_015690437.1\|4065700_4066051_+	GPW/gp25 family protein	F1BUP4	Erwinia_phage	3.8e-37	65.5
WP_015690438.1\|4066054_4066963_+\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	1.9e-120	76.2
WP_015690439.1\|4066955_4067483_+\|tail	phage tail protein I	Q37841	Escherichia_phage	1.8e-75	76.6
WP_015690440.1\|4067492_4070009_+\|tail	phage tail protein	Q858V4	Yersinia_virus	9.5e-74	40.5
WP_015690441.1\|4070018_4070474_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.1e-25	49.2
WP_015690442.1\|4070627_4071797_+\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	2.3e-179	77.9
WP_015690443.1\|4071810_4072320_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	8.1e-65	70.9
WP_015690444.1\|4072377_4072659_+\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	5.9e-25	67.4
WP_015690445.1\|4072691_4072811_+\|tail	GpE family phage tail protein	Q858U8	Yersinia_virus	2.9e-10	74.4
WP_015690448.1\|4075308_4075779_+\|tail	phage tail protein	U5N3F6	Enterobacteria_phage	5.4e-47	62.0
4077555:4077579	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_017060

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

72479 : 156407

Enterobacteria_phage(16.22%)

terminase,tail,protease,plate,integrase,lysis

attL 86218:86234|attR 143032:143048

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014416504.1\|72479_74609_-	hypothetical protein	A0A291AXF7	Shigella_phage	6.5e-31	49.3
WP_014416505.1\|74663_77735_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	65.9
WP_014416506.1\|77731_78112_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.7e-54	77.6
WP_014416507.1\|78121_78604_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	6.9e-66	78.8
WP_014416508.1\|78600_79065_-	hypothetical protein	A0A286S298	Klebsiella_phage	8.2e-48	53.3
WP_014416509.1\|79112_81542_-\|tail	phage tail length tape measure family protein	A0A192Y7S1	Enterobacteria_phage	2.7e-105	47.9
WP_041673380.1\|81522_81828_-\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	1.6e-23	56.9
WP_014416511.1\|81836_82259_-\|tail	phage minor tail protein G	K7P7M5	Enterobacteria_phage	6.4e-07	28.9
WP_014416514.1\|83040_83445_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	2.4e-43	60.4
WP_014416515.1\|83441_83996_-\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	4.1e-54	59.9
WP_081481118.1\|84006_84207_-	hypothetical protein	K7PH55	Enterobacterial_phage	3.6e-08	60.9
WP_014416517.1\|84802_86761_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	6.3e-275	73.6
86218:86234	attL	NA	NA	NA	NA
WP_014416518.1\|88286_88505_-	hypothetical protein	A5LH28	Enterobacteria_phage	3.7e-19	70.0
WP_041673383.1\|88501_90610_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	2.3e-299	73.5
WP_014416520.1\|90599_91109_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	5.3e-40	51.7
WP_014416521.1\|91673_92120_-	hypothetical protein	NA	NA	NA	NA
WP_014416522.1\|92446_92953_-\|lysis	lysis protein	S4TP37	Salmonella_phage	1.3e-17	32.7
WP_014416523.1\|92945_93476_-	lysozyme	Q7Y3V3	Yersinia_phage	3.5e-79	78.9
WP_014416524.1\|93477_93783_-	hypothetical protein	O64361	Escherichia_phage	4.9e-25	55.6
WP_014416525.1\|94387_94639_-	hypothetical protein	NA	NA	NA	NA
WP_014416527.1\|95340_95994_-	DUF4276 family protein	NA	NA	NA	NA
WP_014416528.1\|95996_97283_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	5.1e-15	25.5
WP_014416529.1\|97385_97733_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.9e-41	67.3
WP_041673384.1\|97747_98761_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	5.4e-76	44.0
WP_014416531.1\|98757_98916_-	hypothetical protein	NA	NA	NA	NA
WP_014416532.1\|98912_99770_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	1.7e-86	53.1
WP_071823650.1\|99766_100456_-	DNA replication protein	A0A193GYX1	Enterobacter_phage	6.3e-44	44.2
WP_014416534.1\|100452_101379_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.2e-75	57.7
WP_014416535.1\|101368_101557_-	DUF4222 domain-containing protein	A0A1W6JP38	Morganella_phage	6.7e-09	50.9
WP_014416536.1\|101740_102247_-	hypothetical protein	K7PJS5	Enterobacterial_phage	1.3e-46	63.7
WP_014416537.1\|102272_102518_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	4.4e-16	62.7
WP_014416538.1\|102615_103311_+	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	1.0e-86	69.6
WP_014416539.1\|103471_103630_+	hypothetical protein	NA	NA	NA	NA
WP_148271888.1\|103607_103844_-	hypothetical protein	NA	NA	NA	NA
WP_013577813.1\|105308_105551_+	excisionase	NA	NA	NA	NA
WP_014416540.1\|105534_106659_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	4.0e-104	51.7
WP_013577816.1\|108014_108203_-	hypothetical protein	NA	NA	NA	NA
WP_014416542.1\|108361_108775_-	hypothetical protein	NA	NA	NA	NA
WP_013577817.1\|109004_109784_+	(S)-acetoin forming diacetyl reductase	Q06VL0	Trichoplusia_ni_ascovirus	1.5e-17	31.5
WP_013577818.1\|109848_110715_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158307035.1\|111135_112572_-	tannase/feruloyl esterase family alpha/beta hydrolase	NA	NA	NA	NA
WP_013577820.1\|113071_113239_+	YhfL family protein	NA	NA	NA	NA
WP_013577821.1\|113536_115678_-	5-histidylcysteine sulfoxide synthase	NA	NA	NA	NA
WP_013577822.1\|115824_116949_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	4.6e-28	26.8
WP_013577823.1\|117355_118903_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	3.4e-37	40.0
WP_013577824.1\|118975_120523_-	Tar ligand binding domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.0e-09	54.5
WP_013577825.1\|121368_121863_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_014416544.1\|121894_123442_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_013577827.1\|123457_124807_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_013577828.1\|124803_125478_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_013577829.1\|125479_127156_+	OmpA family protein	NA	NA	NA	NA
WP_013577830.1\|127188_127680_+	type VI secretion system effector Hcp	NA	NA	NA	NA
WP_014416546.1\|127842_130497_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.5e-93	32.9
WP_013577832.1\|130493_132836_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	6.7e-13	21.9
WP_013577833.1\|132950_133466_+	YbjP/YqhG family protein	NA	NA	NA	NA
WP_013577834.1\|133482_136971_+	hypothetical protein	H6SUH4	Campylobacter_virus	2.8e-07	34.9
WP_013577835.1\|136986_137544_+	hypothetical protein	NA	NA	NA	NA
WP_013577836.1\|137559_138009_+	hypothetical protein	NA	NA	NA	NA
WP_013577837.1\|138036_138567_+	hypothetical protein	NA	NA	NA	NA
WP_013577838.1\|138628_138892_+	PAAR domain-containing protein	R9U4D0	Rhizobium_phage	2.2e-05	45.8
WP_013577839.1\|138894_140106_+	hypothetical protein	NA	NA	NA	NA
WP_013577840.1\|140102_143519_+	type VI secretion protein VasK	NA	NA	NA	NA
143032:143048	attR	NA	NA	NA	NA
WP_014416547.1\|143618_145388_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_013577842.1\|145351_146434_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_013577843.1\|146497_147040_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_014416548.1\|151036_151876_+	hypothetical protein	NA	NA	NA	NA
WP_014416549.1\|152172_153222_+	hypothetical protein	NA	NA	NA	NA
WP_013577848.1\|153311_154151_+	hypothetical protein	NA	NA	NA	NA
WP_013577849.1\|154351_155956_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_013577850.1\|155975_156407_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017047

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017060

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection