CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017464	Ignavibacterium album JCM 16511, complete sequence	6 crisprs	csa3,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csx20,cas1,cas2,cas3,WYL,DEDDh,cas9	0	7	2	0

1. NC_017464

CRISPR-Cas detection and classification

Crispr_ID: NC_017464_1

• CRISPR_ID: NC_017464_1
• CRISPR_location: 1318750-1318852
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_017464_1

Consensus_repeat	Method
TTAAAGCCCGGATGGCGGAATTGGTAGAC	CRISPRCasFinder

spacers of NC_017464_1

>1.1|1318779|45|NC_017464|CRISPRCasFinder
CTGTCTGCCGACAGGCAGGCGCGCTAGTTTCAGAAGAAAAAATAT

CRISPR arrays and Neighbor proteins around NC_017464_1

CRISPR arrays

The CRISPR arrays of NC_017464_1

>merge|NC_017464|1|1318750-1318852|CRISPRCasFinder
TTAAAGCCCGGATGGCGGAATTGGTAGACCTGTCTGCCGACAGGCAGGCGCGCTAGTTTCAGAAGAAAAAATATTTAAAGCCCGGATGGCGGAATTGGTAGAC

>NC_017464|1|1|1318750-1318852|CRISPRCasFinder
TTAAAGCCCGGATGGCGGAATTGGTAGAC	CTGTCTGCCGACAGGCAGGCGCGCTAGTTTCAGAAGAAAAAATAT
TTAAAGCCCGGATGGCGGAATTGGTAGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017464.1|WP_014560036.1|1323768_1327062_+|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl|CDD|275036
NC_017464.1|WP_014560026.1|1309885_1310731_-|L,D-transpeptidase	unknown	unknown	gnl|CDD|341130
NC_017464.1|WP_041294377.1|1312619_1313840_-|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl|CDD|234824
NC_017464.1|WP_014560027.1|1310727_1312551_-|excinuclease-ABC-subunit-C	unknown	unknown	gnl|CDD|237785
NC_017464.1|WP_014560040.1|1330942_1331212_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014560031.1|1316377_1318606_+|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl|CDD|273955
NC_017464.1|WP_148267615.1|1320079_1320733_+|DUF4397-domain-containing-protein	unknown	unknown	gnl|CDD|379570
NC_017464.1|WP_014560038.1|1328289_1329849_-|DUF853-family-protein	unknown	unknown	gnl|CDD|283518
NC_017464.1|WP_014560022.1|1305974_1306451_-|phosphohistidine-phosphatase-SixA	unknown	unknown	gnl|CDD|224973
NC_017464.1|WP_014560030.1|1315648_1316371_+|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl|CDD|277343
NC_017464.1|WP_014560029.1|1313981_1315589_+|M1-family-metallopeptidase	unknown	unknown	gnl|CDD|341066
NC_017464.1|WP_014560037.1|1327132_1328173_+|PorV/PorQ-family-protein	unknown	unknown	unknown
NC_017464.1|WP_014560032.1|1318949_1319195_+|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl|CDD|198396
NC_017464.1|WP_050951010.1|1308011_1309889_+|Na+/H+-antiporter-NhaC-family-protein	unknown	unknown	gnl|CDD|224671
NC_017464.1|WP_014560041.1|1331295_1332978_+|hypothetical-protein	unknown	unknown	gnl|CDD|379441
NC_017464.1|WP_014560039.1|1329953_1330802_-|DUF3078-domain-containing-protein	unknown	unknown	gnl|CDD|378621
NC_017464.1|WP_014560035.1|1320763_1323748_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|372685
NC_017464.1|WP_014560023.1|1306447_1306747_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014560024.1|1306746_1307919_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014560033.1|1319325_1319466_+|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl|CDD|198396

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017464.1|WP_014560026.1|1309885_1310731_-|L,D-transpeptidase	gnl|CDD|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	5.31317e-22
NC_017464.1|WP_014560027.1|1310727_1312551_-|excinuclease-ABC-subunit-C	gnl|CDD|237785	PRK14671, uvrC, excinuclease ABC subunit C; Provisional.	0
NC_017464.1|WP_014560031.1|1316377_1318606_+|PBP1A-family-penicillin-binding-protein	gnl|CDD|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_017464.1|WP_014560036.1|1323768_1327062_+|T9SS-type-A-sorting-domain-containing-protein	gnl|CDD|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	0.000189544
NC_017464.1|WP_014560038.1|1328289_1329849_-|DUF853-family-protein	gnl|CDD|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NC_017464.1|WP_014560022.1|1305974_1306451_-|phosphohistidine-phosphatase-SixA	gnl|CDD|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	1.51647e-34
NC_017464.1|WP_148267615.1|1320079_1320733_+|DUF4397-domain-containing-protein	gnl|CDD|379570	pfam14344, DUF4397, Domain of unknown function (DUF4397). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.	0.000362642
NC_017464.1|WP_014560029.1|1313981_1315589_+|M1-family-metallopeptidase	gnl|CDD|341066	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains mostly bacterial and some archaeal M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	5.48084e-152
NC_017464.1|WP_014560030.1|1315648_1316371_+|UDP-2,3-diacylglucosamine-diphosphatase	gnl|CDD|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	7.4479e-48
NC_017464.1|WP_014560032.1|1318949_1319195_+|GIY-YIG-nuclease-family-protein	gnl|CDD|198396	cd10449, GIY-YIG_SLX1_like, Catalytic GIY-YIG domain of yeast structure-specific endonuclease subunit SLX1 and its homologs. Structure-specific endonuclease subunit SLX1 is a highly conserved protein from yeast to human, with an N-terminal GIY-YIG endonuclease domain and a C-terminal PHD-type zinc finger postulated to mediate protein-protein or protein-DNA interaction. SLX1 forms active heterodimeric complexes with its SLX4 partner, which has additional roles in the DNA damage response that are distinct from the function of the heterodimeric SLX1-SLX4 nuclease. In yeast, the SLX1-SLX4 complex functions as a 5' flap endonuclease that maintains ribosomal DNA copy number, where SLX1 and SLX4 are shown to be catalytic and regulatory subunits, respectively. This endonuclease introduces single-strand cuts in duplex DNA on the 3' side of junctions with single-strand DNA. In addition to 5' flap endonuclease activity, human SLX1-SLX4 complex has been identified as a Holliday junction resolvase that promotes symmetrical cleavage of static and migrating Holliday junctions. SLX1 also associates with MUS81, EME1, C20orf94, PLK1, and ERCC1. Some eukaryotic SLX1 homologs lack the zinc finger domain, but possess intrinsically unstructured extensions of unknown function. These unstructured segments might be involved in interactions with other proteins.	2.35677e-21
NC_017464.1|WP_050951010.1|1308011_1309889_+|Na+/H+-antiporter-NhaC-family-protein	gnl|CDD|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	3.90707e-54
NC_017464.1|WP_014560041.1|1331295_1332978_+|hypothetical-protein	gnl|CDD|379441	pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi. Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organisation of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.	0.00568861
NC_017464.1|WP_014560039.1|1329953_1330802_-|DUF3078-domain-containing-protein	gnl|CDD|378621	pfam11276, DUF3078, Protein of unknown function (DUF3078). This bacterial family of proteins has no known function.	1.28505e-16
NC_017464.1|WP_014560035.1|1320763_1323748_+|TonB-dependent-receptor	gnl|CDD|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	1.54076e-29
NC_017464.1|WP_041294377.1|1312619_1313840_-|glucose-1-phosphate-adenylyltransferase	gnl|CDD|234824	PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NC_017464.1|WP_014560033.1|1319325_1319466_+|GIY-YIG-nuclease-family-protein	gnl|CDD|198396	cd10449, GIY-YIG_SLX1_like, Catalytic GIY-YIG domain of yeast structure-specific endonuclease subunit SLX1 and its homologs. Structure-specific endonuclease subunit SLX1 is a highly conserved protein from yeast to human, with an N-terminal GIY-YIG endonuclease domain and a C-terminal PHD-type zinc finger postulated to mediate protein-protein or protein-DNA interaction. SLX1 forms active heterodimeric complexes with its SLX4 partner, which has additional roles in the DNA damage response that are distinct from the function of the heterodimeric SLX1-SLX4 nuclease. In yeast, the SLX1-SLX4 complex functions as a 5' flap endonuclease that maintains ribosomal DNA copy number, where SLX1 and SLX4 are shown to be catalytic and regulatory subunits, respectively. This endonuclease introduces single-strand cuts in duplex DNA on the 3' side of junctions with single-strand DNA. In addition to 5' flap endonuclease activity, human SLX1-SLX4 complex has been identified as a Holliday junction resolvase that promotes symmetrical cleavage of static and migrating Holliday junctions. SLX1 also associates with MUS81, EME1, C20orf94, PLK1, and ERCC1. Some eukaryotic SLX1 homologs lack the zinc finger domain, but possess intrinsically unstructured extensions of unknown function. These unstructured segments might be involved in interactions with other proteins.	8.77586e-05

Protein sequences

>NC_017464.1|WP_014560031.1|1316377_1318606_+|PBP1A-family-penicillin-binding-protein
MANKKSELNTKRKRIIISSVALIFVILIIYIISGLPSLEELENPKPILASKVFSSDGELIGQFFIENRIETNIDSLPKHLIEALIATEDKNFYDHWGVDVGRFFKAMIKNIITLSFTEGEGASTITQQCAKNLYNLKSGRENALDKVVRKIREWISAVQIERNFTKNEILELYLNVSYFGRGAYGIESAAKIYFNKKASELTLPESAMLIALLKSSEYYDPVKNYDNALRRRNVVLNNMVVNGYLSENEYQKLKQLPIQLATDRPSAIRTDAPHFMEYIRLQLTPIMEKYGYDLYRDGLNIYTTLDMKMQRIANKSSAKHISEYQELFNKNWNWDRNKSLLADLLDKAIKNNPAYRNAIGATEKTRIYNSLKNLQSFVDSVKKEAAKIEVGFVVMDPHNGYIKALVGGTNQEFGRGLNHVTGIRRQPGSAFKPFVYATAIENGYFPAYTLLNQKFDYNGWSPDNADNEYTGYETLRWGLAYSVNVIAGRMTISNIAPPSQVISIAKRMGINSKLDPFPAIALGTMEVSPLEITSAFGTFANKGVHVEPISILRIEDRNGILVQEFSPQSVQAISPQTASIMADMMQDVVNYGTGAGVRRYFQYPAAGKTGTTQKFSDAWFVGYTPDLVAGVWVGFDDHRVKFTNWYGQGAKAALPIWAMFMQAAYKELNLPLKYFELADGVETATFCKETMRLGDTRLATENCPETYTDIINSNNLPATCEIHGGGGRIIRENRSGESGWSH
>NC_017464.1|WP_014560030.1|1315648_1316371_+|UDP-2,3-diacylglucosamine-diphosphatase
MNKTYLFISDVHLGLQSREIENAKERKLVEFLNFAKSNCDELFIAGDLFDYWFEYRHVYQKGFFRTLTALQDLTEAGIKVHYFIGNHDFFHNGFFEKEIGLILYPNPSEFRLNDKRFYVGHGDGLVKNDLGYNILKLILRSSFTQFLYSLIHPDLGVALASHTSKSSRDYTSKKDYGEEDGLFEAAKRKIDEGYDFVLFGHLHRKQFLNYKNGYYINLGSWITEPCFGKFTDKFEIIDIK
>NC_017464.1|WP_014560029.1|1313981_1315589_+|M1-family-metallopeptidase
MFLGIKLLQLLLIFNTLLFNIFFNDGIRAGYVSSSQKNIDILQYYLKLDLNWGKKLITGETKILAHKLISDQKNIDLHFYGNMIVKKVSSDSAVLKFHHIKNILSIDVSEINRDTIEFTIQYYGTPKKSGFNGFVFGEINNIPLIYNLSEPNYTPSWFPCDDDPEDKALFDIEITNDTSFVSVSNGRLVNVENKGEKRTYHWKSNYPISTYLIAVYSSKYISFTQTYKSISGKELPLEFYVLPDHLEEAKKDFAEHKEMLEAFENLFGEYPFADDKYGVAEFLWNYGAMETQTITGIGYNLVSGKNFARDILAHELAHHWWGNAVGPKIWKDIWLNEGFASYSEALFLEYKFGDASLQSAMRGKFSEYFRGSLYNPVNLFSETVYDKGAWVLHMLRNEIGDSNFFGSLKKYYEVFKYTNASTEDFKSICESVSNQNLDKFFDDWVYNDKGIIRCNYSLSDDKTILIAQSNEEFNDFHFNLELKIIYSDGSTEFKTFRVENSKVKFNLNSVKRIKEVIPDPNGKLLAIFNEEGHQQ
>NC_017464.1|WP_041294377.1|1312619_1313840_-|glucose-1-phosphate-adenylyltransferase
MLRETITVILAGGQGERLYPLTAVRSKPAVPFGGKYRIIDFALSNCLNSGLRRIYVLTQYKSDSLNMHLFEAWSIFNPELGEFIYSVPPQRKMNNDWYLGTANAIYQNLNLFSDKKAKWVLILSGDHIYKMDYLKFIDNHIKHDADLSMACIEVPKDQASRFGIVGIDENYNVQSFIEKPPVPPEIPDKKGYSFVNMGIYVFKASVLKDVLLEMESKKIKALDFGQDVIPYMVKSNLKVIAFRFIDENKKVQPYWRDIGTLDSYYAANMDLISVTPEFNLYDSEWPLRTYQYQYPPAKTVSHEGERVGRTLNSLVCDGTIVSGGLVERSILGANVRINSYSYITDSILFHNVWVGRHARIRRAIIDKNVFIPEGYEIGFDPEEDKKKFTVTETGIVVIPKNMVLKD
>NC_017464.1|WP_014560027.1|1310727_1312551_-|excinuclease-ABC-subunit-C
MNSKLELQLKNLPSQPGVYQFLNKNGKIIYVGKAKNLRNRVRSYFQNNVTSPKTLAIVEKTEELQIVVTDSEVEALILENNLIKQFKPRYNVNLKDDKSYPFIKVTNELFPRIYPTRHLLNDGSKYFGPYTDVKSMKASLRMINQIFRIRSCKLDLTEENINAKKFKVCLDYHIKKCDGPCEGLISAVAYNEMVKEVIQLLKGRTDELIKSLTEKMNNAVENLEFEKAAELRDKINQLTSISSKQKIVSDDFDDRDIFAIAFEGKDSSCSVFNIRDGKLIGKKQLRLSIEEGEELPHIYSAAIKFYYQDFAEIPKEIVLEIEPEDKDAILEWLIQKVNNKVKFVIPQRGDLKSLVKMCKENAMLQLKEIQIQKMKNLGNVPYPLAALQRDLRLKNLPKKIECFDISNIQGSDSVASMVVFVDGKPKKSLYRKFIIKSIEGPDDFASMREVIERRYSKLLTENETFPDLIMVDGGKGQLSSAVEILNKLGFRNYNIIGLAKRLEEVFFPGKSEPETIAKTSSGLKLLQQIRDEAHRFAITFHRQRRSKRIISTELTEIKGIGTQTAKLLIEKFGSLEAVKSSSLEELASVIGIKKAELVKSHFNQSTE
>NC_017464.1|WP_014560026.1|1309885_1310731_-|L,D-transpeptidase
MKTLLILFVFTTISFADDPNRVYSTKQSLSLDELRKISSTKIVDTVFTMSDYFVEIDLSKQLGYLHSRFDSVKTFKVSSGTKKIKDGVETNTGIFVIQHKAAKWYSTQFDSTLMLNWMGFNYGIGFHALAGKSYYKFLGNKTSSHGCVRVSREDAKELFSKLNYGAPVLINKGETAIRISFADKSSDDYKYYDTENLQKEIRRRINHLYKGSYLSFVNQKILIDNKNITHEGISIGDFSKVAVRQKIYPESLFIELAVPELKAELIPANYFSPQKLFASND
>NC_017464.1|WP_050951010.1|1308011_1309889_+|Na+/H+-antiporter-NhaC-family-protein
MKKFFLLKLFILLFSGITFSQTIQVPQIVLTNIDFEIKVTDYPDSNSSIPIKIISSEGKLISEYNLIRQENHFTGKIKIADSGKYFAELKGKKFESVINVIPGILSIIPPLIAIFIALIFRQVLFSLLLGIFAGTLFLYDYNPLIAFMRLVDVYVINSLIDKSHIQIIVFTLMFGGVIGLMSKSGGTTGIANLLIPLARNRKSGLFATWLSGIIIFFDDYANTLVVGNLMRPLTDKLKISREKLAFIVDATSAPVASIFLISSWIGYEVGLIQDGFKVIGANVNAYNVFLDTIIFRFYPIAMLIFIPITILMKRDFGPMLKAERYALANGIDAKHSGSKSNDILKSTELFGNEDRAKWFNGVIPILIIVFGTVAGLIFTGIKSLESMGIKDYSIRDIISYSDSYASLLWSSAAACVVAGVMIGTQRIMNLGEIMDACFLGIRSMFLAVVMLTLAWAIGSITQDIKTADYIISVISDSIAPHWLPVLVFIVCAATSFSTGTSWGTMAIMMPLVIPLSFHISSINNLSEADSYLIMVGAISSVLAGCVFGDHCSPISDTTILSSMASGCDHVAHVNTQLPYSIFVAIFCMLLGDIPTAFGFPPILSILLIVLCLIIGLRIIGKKVEA
>NC_017464.1|WP_014560024.1|1306746_1307919_-|hypothetical-protein
MKKFIITSIISIIFIFFSCNLPKEEKTTSLVDGEKILSLVTSALDSSNNIKNPIASLFDKAKDKSYTYNKIEIDSAVNGSRKFYSLLLEHPIPAYNLVAVIDDSLNLLLKDVSLNGYIKAKWKKLDNRNVIEVTDEFKSYEVFNLHRYSLYYPDGNKYNLVFRTFTFFSSPKDSVYQNIVEISDSLIRTKIPKPKFISFADSVDNFTFDRMKFRYVSNKNLFDSTILKEINNTQAELSPNHILNKKSVNDILEYSADNETFTADENDFRFQIPKEWAKIYNVSLSQDINRNVKGIYFVNQKLGSTVGIIKIPLTDSAEIYVNEKLTVVKEVGNYKIRQSELKQDLKRFYQTFEHSCGNKKYLLLIEGSKSVYKENEKLFNDILSSFIIKC
>NC_017464.1|WP_014560023.1|1306447_1306747_-|hypothetical-protein
MYKLLIFIHKTKENNFLNFFRNSFLPLLSEINGKEVKLAKVESNLLLDQKYSHFCELTAEDKYEMDNKLNSSAGRSLSKLLMESHRNITVITVNYQSEE
>NC_017464.1|WP_014560022.1|1305974_1306451_-|phosphohistidine-phosphatase-SixA
MNLYLIRHSISEKLIPPKKDFERELTQSGIELIKKASEGWKKIIPSFDLILYSPYIRAEQTAKTIAQIFNITDKLVKENNIAAGCSTGNLIDVLSVYDEQNIAVVGHQPDLSNHITNFCSHNHLNIAFPPAAIAKVSFDGSMKFGIGRLEFLIPAEAY
>NC_017464.1|WP_014560032.1|1318949_1319195_+|GIY-YIG-nuclease-family-protein
MIYVYALRSKIKNFIYVGMTANIDDRMRRHNTGYERTTRSYRPFELIYLEEFENRQEARVKEKYLKSGVGKELLKRLKDKV
>NC_017464.1|WP_014560033.1|1319325_1319466_+|GIY-YIG-nuclease-family-protein
MIYVYALRSKIKNFIYVGMTSDINYRMFRYNSGYEKKKTLTSSNKQ
>NC_017464.1|WP_148267615.1|1320079_1320733_+|DUF4397-domain-containing-protein
MDTSVNPIPSSINYSSQMKVVNLATGAGSASLTLNGQSLGSVTFGGELPGSQEAFLTIPSGSKSLVASFDNGSSKSFRFSATTDYKFRAFLVGSAADTTGPSLVIVNQRYIWQTKDSENGKPLFPADTAWISVFNGSPDITVNSIKIGADVNEFSTPLELGKNSTYLKNAAGNVTIEITYNNTEILSFSYDLSAKSRYTIVLYDVSANLKYAVLLDD
>NC_017464.1|WP_014560035.1|1320763_1323748_+|TonB-dependent-receptor
MFPKLYKIFIIIMFAVSFVYAQNGRISGTVTDKQTGEPLIGANIIVVGTTFGAATNVNGEYIINNIPAGNYTVKASYIGYQDVTVSNLSVNAGLTTRLNFELTSSQISTEEVVIISERPLIEKTSTNAKRIVDSDRLEELGMRGVQEVVALQPGVVLQNGRLFIRGSRPDETGYTVEGADVKDVLNRNGGSLVNVIPDAVQEVSVQAGGYTAEFGNANAGIVSSEFKTGTNNYHFSFRSETDNFGNYPGDKFLGTYSYGYSSNVFTVSGPTFTDKLKFFLSGENTFSRDNPKFFSANPKQFSDGALWDTTKIFDTGVSGGNRNEYQILKWGDANLPGNMNNRYTANGTLLFDNNPLFLRLAGAYSRTKSQGMNNIINLFNTDRLAMNDVSTLLLNLKGTYLLGSNSFIEGLVGYYDYRGKTYDPVFGDDFLAYSDSLAAAKFGWVYSNYFSDPADYDFYGFPFSRPGANLTGYTKDHNNYLTASLAYTGQVDIHALKIGGSYQRYTVRRWQVGNPGNFLSTVRNNPDLARDSLATLISTTLFANFNNYGFDVFGNETDEEGLFAPKHPVFASAYIVDRIEISDLIINAGLRFDHIDMDSWAWVDPRLPVFDTRTNLIPDSAITKGDKFNFVSPRLGFAFPISDKTVFHLQYGKFVQAPSLDIAYRGVFIAAQQLRSANLFTNPIAYNPNPIRTTQYEVGFGHQFSEYAAFDVTAFYKDIKGQIQYAIIPTAPGAFRANYSAFVNQDFATTKGVELSLKLRRVSRVSGSIDYTFSSAEGTNSLSNSGLGSTEVNRNVPTVLIPLDYNQTHRGSIFIDYRFDKDDGGPILERLGLNMLLTFNSGHPFTYSQWTGLGQSSAWTGGLTPIGTGDTRGRRPIGPINSAKTPWVYNIDLRIDKTVTIYNLDVNFYIQVFNLLNTKSVINVYDKTGNAYDDGFLSTTDAQTLIQGDPGRYERFADLYRAINLENRQAAYAVYGYDLFGAPRQLRVGVWINY
>NC_017464.1|WP_014560036.1|1323768_1327062_+|T9SS-type-A-sorting-domain-containing-protein
MKQLKLLITVITLIFLVYPHSLSAKYEVDPKDKGKKPIFQKTWANPVMSIMNINNASMWVNDNGFHDWVIGGGWNGAFPIGTTVGAIFAEGIVWGGLVNDGNAPVVRVNGNTYGSGTNAIDRLYRVRPDYARADLRNDAATFLQVPPSSVTDADIQTIREQYAKDWNEWPATQGAPFDDKNGNGIYEPAVDVPGIPGASQTLFIRYDDSGSEGNYGSPAIGLEISETYWAYAVTGPLANVIFKKVNIIYKGTPTSSPTSTIDSMYIVQWADPDVGNSTDDFAGCDTVLNLGYAYSSKASDATYAGIGFPPPAVGYDFLSGVSKYTGNPDDSAIVDLKWKKGYKYVNRKPMSSFVYFAAGGSWSDPSFNYNGTLQFYNLMRGKLPEPRYPSGLDFPPEVVDYAPDGTFLLAGDPVFGLGKIDGKKEGPGDRRIMVTNGPISLNLGDTAQVVLALVYGMGKNNLSSISSMKFNDQFAQFAFDQLFNVPVMPTPDVSAAQVDNKVSISWSMDPEVKDAIENSPHGPYEFEGYAVYQLPAGSVDIKDPKAVRIAIFDVVNGVSVLSDKFLDEATGLIYSKPVAFLDNTKGIQRYLTIDKDYINNKGLINGQSYTFAVTAIAYNNDPGLPANILESAPAILNVVPQSTTPGVRYNSVVGDTIKAIHQSGGSDGSVYAIVVDPSKLKGHNYEVTFEETVDGTVWNLKDVTENRIVLSNQLNQLGNDDYAIVDGMLVKVVGPPFAGVKDWDIPNGTRRFTWAGGADGLHFEGFNGALGYASPRSIFDDGVMIVTPPELKNVVLKLASVNFTGDYDPPFDLNDPNVSYGYRYMRRASQPPAKPEFAPYILNPTAGYAFQEFAKNVPLSAWNVDDPNNPQRLAVGFLENNAVNGLVDGKYWPGNHNNYDNVDGDGPREWLFIFDAPYSETSDPTMAQEIIGSDARVMYFATWARRGAAVFSPNASGEDEFLILANKVNSVADVFTFSTPKPSYNPDLAKEDVDKINVFPNPYYGYQYRETAPNNKYVTFSHLPEKAVIRIFDLSGVLVRTINHNSTNQFETWDLQNDNNYPVASGIYIVYIDMPDLGKTKILKLAIVNEQQMLKVY
>NC_017464.1|WP_014560037.1|1327132_1328173_+|PorV/PorQ-family-protein
MIQLQRILLVLLIIGITGVEVFAGGQNRAGTAGAPELRIPVGARYLSMAGSSISFVKGLESIYWNPAGVDLSTSDANAIFSHRSYIADMSMNFVAASGRLGDIGTIGLSFRSLNIGDINVTTMDQPDGTGQIISPSYFVLGLTYSKQLTDRISVGANFNLISENIDRVSASTFAFDFGVQYRDLFSMPGFNLGVVVKNLGAPIKFDGNGLYVNAEDPNSQRGPTFLKIDAASAELPSEIAIGLSYQRNFDNDNSLTVSTTFQNNNYSYDDYKFGLEYSYKNLLYLRGGYLWAPQSDDNTPNIFQNYTVGVGLNLAEFSGLDLSVDYAYVPVKFFDANHVFAISFGF
>NC_017464.1|WP_014560038.1|1328289_1329849_-|DUF853-family-protein
MTTKEKFIETIQQGYSFKGDSIIFGTAIFDSEAIPNLHIKMPLATINRHGLIAGATGTGKTKTVQLFAEALSDKSIPVLLMDIKGDLSGIAAEGISNPKISERHNKIGLPYQPKKFPVEFLTLSDEKGVRLRATVSEFGPILISKILELNDVQSGLVSVLFKYCDDNNLPLLDLKDFKKILQYASNDGKQEIEKEYGNISTTSMGTILRKVIELEQQGANKFFGERSFDVEDLLRLDENGNGMISVLRLIDLQNRPKLFSTFMLCLLAEIYQTFPELGDRPEPKFVIVIDEAHLIFNEASKALLEQIETIIKLIRSKGVGIYFCTQNPQDVPASVLSQLGLKIQHALRAFTAQDRKMIKLTAENYPLSEFYKTDEMLTSLGIGEAAITVLNEKGIPTPLAATLLCAPRSRMDVLTDDELNEIISKSKLIPKYNEIIDRESAYEILNQKLERAAQQASNEISKEVPQVRFPQQTKTTTRRTEKSAAEKIASSPLAKQVGRTLVRELTRGIFGVLLGGKKR
>NC_017464.1|WP_014560039.1|1329953_1330802_-|DUF3078-domain-containing-protein
MRKLFFLILFSASIISAQDVADSLLIQGWNPTGVVGVNLSQIAFKDWTQGGSNALAYTLFSNFGVIYFDNPWKWRTNLKAAYGRTKLEDQGYRTTDNEFYFESILTRKIGWPVDPYFALTIRSSLTKGYDYKSDPAVQIVDFFDPGYVSQALGFQYSHGEIFSSRLGVALQQTFANKFAAAYTDDIETTDKIEDFKFDTGIESVTEVKYNFYDNMTYLSFLRLFSRFNSLDVWDVRWDNTIAAKVNNYITVNFNVVLVHEISQSRKTQIKEAINIGFAYSLF
>NC_017464.1|WP_014560040.1|1330942_1331212_-|hypothetical-protein
MRPIYLYIDKYGITRKVAVDLAYLFPHKQIRLPKWEFEEGLYLRYLPDLKDHSKIEKYFLTRDKILNEDNNFYYFAFPFKYEQVSEVSV
>NC_017464.1|WP_014560041.1|1331295_1332978_+|hypothetical-protein
MKSFKLFSLIAILNIQIITNAQIENVQLNHPVYIYLKEMYVKGLVDYIKEDDPVMSRFEILKLLDQVKQNESVLSSTEKKLLQKYLSEFSDDLNPENSTQLFNSADNFFSDLPEMFSQKNKYLYGYKEYGNNIFLEWLGHFYHGQKFSPTPTNNANLYDIGFRMRGTVFHQLGYNLTVIKGGVSGNNSIAETIEPKLLSNYKWVEAIENIGNYGFNYGYLKFYTSPMGKMDLSVQLGREDISFGYGYGSKLVLSGENPTLDFIKFNFDYGIIHFTSLHASTVGNFSYDITQRYTKFLALNRLKLSFKNLFDFGIGETMIYSGRGIEVGYLSPLAFYKFIEMDLQDRDNGTLWMDFQTNFMKKIQFQATFYLDENILSNLQDLDRYTNKTAYQLNAFWYEPFSINDLSLILEYTKIRPYVYTHRDPKNTYTAFGTNLGHRIGPNADEIMLRANFNLNDRIRFTGEYRFSRKGKNIYDINGNLIKNVGGDIFLSHPDILENTTAKFLDGERINTSHFILGMRVEPVREFYFDIYLNFISSKNISKSITDNLSFGLVKFTLEY

Crispr_ID: NC_017464_2

• CRISPR_ID: NC_017464_2
• CRISPR_location: 1381767-1387646
• CRISPR_type: TypeIII
• Repeat_type: NA:I-A,II-B,III-A
• Spacer_info: 87 spacers
• Cas_protein_info: cas2,cas1,csx1,csx20

Consensus repeat of NC_017464_2

Consensus_repeat	Method
GTTTTAATCGAACC-------------------------------ATAGTGGAATTGAGAC	PILER-CR
GTTTTAATCGAACCATAGTGGAATTGAGAC	CRISPRCasFinder
GTTTTAATCGAACCATAGTGGAATTGAGAC	CRT

spacers of NC_017464_2

>2.1|1381797|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AATGTTGAAATCACCTTTAGTAAGAGAAACCTTCTCT
>2.2|1381864|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AGAAAATCGAGCTTCGTTATTAGCATCAATTATTAGGTA
>2.3|1381933|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTTGGAGGGATATAAAATACAGGTACTTTCCTAATGGA
>2.4|1382001|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CAGTATAGATTTAAAGAAATAATTATCGTTCTTGAAGAA
>2.5|1382070|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TGCTGAAGCTAAAGCAAAAGCAGAAATAAGTAATAAA
>2.6|1382137|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CAAGGGAAAGGGATAAGGTTTTTTCAACAAGTTCCA
>2.7|1382203|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TGAAGATTTATTTTGATTTTATGTCGCTCTGATTTT
>2.8|1382269|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
GCAAAATTGACAGTCCTACTATGCCAATAAATGCCATAG
>2.9|1382338|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CTGATAATTTGTAATAAATATTTTTGTTTTTTTCATTA
>2.10|1382406|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
ATCGACCTAATCGTTTTCTTTGATATTAAGCTTGACT
>2.11|1382473|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AGCACTTTGCTTTTTCTCATATCGATTAATTTAGTCA
>2.12|1382540|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
ACAGTAGTTTTCTCAACTGTTCCATCCTCTTTCATGT
>2.13|1382607|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AAAAAATCAGATTTTTTGAGAAAAAGCACTTTGCTTT
>2.14|1382674|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTCCTGAAAATTATTTCCAAAATTTCTGATTAGGTCG
>2.15|1382741|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CCTGGCAAATGCATCATAATTGCACCGACGCCCTCAG
>2.16|1382808|35|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CCTGGTCAGTTGTAGTCTGATGCGGAATTTTTCCA
>2.17|1382873|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CTTGGAGAAGCATTTTGAGTTGCTTCGTTTAGCATT
>2.18|1382939|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AAGCTTCGGATCGAACACTGCAATTGCGCCAACAGTA
>2.19|1383006|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TGCTTCAGGATTAGCCGATGTCATATCACCGGAGAAC
>2.20|1383073|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTTGGATAAAATCAATATCCAAATTTTTTTGACTAT
>2.21|1383139|35|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CCATATCAAAAGGATATTTATATTAAAAATGCTTA
>2.22|1383204|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
GAGAAACTCTTCAAGGGATAAATCGGTTTTTTCAACAAG
>2.23|1383273|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CAGGTCTCCGACTCTTTCACAAATTGCCCCAAGTTGGGG
>2.24|1383342|34|NC_017464|PILER-CR,CRISPRCasFinder,CRT
ATCAAAATAATTCGTCTAGTTTGTGTTCTGTTTG
>2.25|1383406|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTTCTTTCGGTAGTAGGAACATAAAAGTTCCATTTAT
>2.26|1383473|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TACTACTTTATAAATTTATAATTTATTATTGTCTAAA
>2.27|1383540|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AAATATCCTAATTATCAAACAATAATTATTCGGATAA
>2.28|1383607|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
ACTCTCTCAACTTGCTCACGAAGGATGTTAATTTCCTT
>2.29|1383675|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TACTACTTTATAAATTTATAATTTATTATTGTCTAAA
>2.30|1383742|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AAATATCCTAATTATCAAACAATAATTATTCGGATAA
>2.31|1383809|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CCTTTCAAGGACTGGTCTTTCTCCACCGCCCGCCTTCC
>2.32|1383877|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
GCAAATCCAATTAATACAGCTTTCAATTGGATCAACC
>2.33|1383944|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TATTTTTTCGATCTGTTCACGAAGGAGGTTTATCTCCG
>2.34|1384012|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CTTGCAACCAATCCGATTATATCAGATGGAGCTTCTGAG
>2.35|1384081|34|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TCAGCTTGATGCACAGGAAGTTTATGTTCAGCCA
>2.36|1384145|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
GGACTTGGAACTTTTATATCCCTTGCGAGAGTGTTTT
>2.37|1384212|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CCAAAAACCTCAGCTTGAGATTATTATAATAATAAAATA
>2.38|1384281|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
GTATTGATTCGGAGGTCTAATTCCTCCCAATCTTCT
>2.39|1384347|35|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CCAAATATATCTTTATGTTATTAGGATATTTATTG
>2.40|1384412|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AAACTTTTATTTTTGGAATAAAACCATCAAGATTTTTA
>2.41|1384480|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CCGATGATTAAAGCCAAGCCATTTGGCTGCTTTTTTA
>2.42|1384547|35|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CATATCTTCTCCTTATTAAATTATTAATTAGTTAA
>2.43|1384612|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
GCAGCTTCAGGCTCATACTTAATCGCAATTGAATTG
>2.44|1384678|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AGAAACGAATCAGCTTTTCCGGGATTTGCGGTAATGT
>2.45|1384745|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AAAGCTTTACCAGTTCCTCGGCATGGCCGATATTTATCG
>2.46|1384814|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TAAATTGCCCATCTTTAAGGTAAGACTCATACAACA
>2.47|1384880|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTACTTGGCCAGCGTAGAATTCGTCAAGGCGTTTTT
>2.48|1384946|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTTGTTTATCACCCCAATTAGTTGAGGGGTGATTTGATA
>2.49|1385015|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
GCATTCTTTAACTTCCACTCGTTACGAATGATTTTG
>2.50|1385081|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CCTCCTTTCAAGGACTGGTTTTTCTCCACCGCCCGC
>2.51|1385147|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
GGCGATATTATCAAGGTAACATATATCGGTTCAAACA
>2.52|1385214|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CGGGATCTGCCGGTATTTGCCCAAGTTTTGAAGTTTCC
>2.53|1385282|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CATTTGAGCTATCTTAATAATGGTCGGGCGATTAGATAC
>2.54|1385351|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TGTTTTTTCTCCAAGTATCTTTTCTCAAAGGCCTTAG
>2.55|1385418|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTTTTAGTTGTTTTCATGTTTTTCTCCTTTTTATGT
>2.56|1385484|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTTCGTAATTCTAAGACCCAACAAGGGATTCACCCTTG
>2.57|1385552|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTGTTCATATAGGTTTTCCTTTGTCTTTTGCGCTTAAA
>2.58|1385620|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TGTCATTTTCTTTGATGACGTATTGTATTGGTTCATCAA
>2.59|1385689|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AACTGTGGCATAATGAATGCCTGTTTTATATGATTCT
>2.60|1385756|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AACCGGCCCAACCACTGGTACCTAATGTCCTTATGGA
>2.61|1385823|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AAGACTTGCTCAGGTCTTATATTTATTCCTCTAGTTC
>2.62|1385890|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CTGACCAGCCCTTTTGAAATAAATTCATTGATGAATAG
>2.63|1385958|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TATCTCATGTTCTTGCAGGTCTCTCACTTCGTTGTCCTG
>2.64|1386027|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CGCTTTTCTCTCCATTTCCTCAGTAAAAGCAAGCATC
>2.65|1386094|41|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTGCCAAATACACCGTCATCTTTCAGTAATCTGACTTTAAG
>2.66|1386165|40|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TGTCATTACAAATGCTTTAATAATATAGATACCAAGTGTA
>2.67|1386235|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AAATGTTTAATAATGATACACTATCCATAGGTTCATTA
>2.68|1386303|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
GATTAAGTGGACCGCACGGATTAGGTGCGTGTTAATCC
>2.69|1386371|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TACCTTTACTGCTGTTCTTTCCGGAGAATCAATAATA
>2.70|1386438|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CAAAGCTTGTTCTTGTTCTGAATATCTCCCTGATTA
>2.71|1386504|40|NC_017464|PILER-CR,CRISPRCasFinder,CRT
GAAAGCTTGCCACAATATAGATGTTATATGTATCAAGCGG
>2.72|1386574|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TGGTGAAACACATTATTATAATCACCCTCACGGACGTA
>2.73|1386642|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAA
>2.74|1386709|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CCGTTGGAGCTGGCAGCATTTCTATGAAGGTGCAAAG
>2.75|1386776|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAA
>2.76|1386843|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TGCGCAATAAAACATATCTAACATCCTTTTATCTTCA
>2.77|1386910|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
AATTACTATTTTGTATTTGTTCGGCTTCCCGTATAGCC
>2.78|1386978|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
ATATTTCGGGAATTGCTTGTTGTAATTGAAATAATTTT
>2.79|1387046|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
GCAATATGGCCCGCTTCCATTGATTTATGGAGACAT
>2.80|1387112|35|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TCATTGCACCTCTATTTTATTTTTATGTTAGACCC
>2.81|1387177|37|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CGTTTGAACATTGGCACCAGGTCTTACAGATACTGGA
>2.82|1387244|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CCGGTAATGGTATTCTTATTTTCTGCCGGGATCTGC
>2.83|1387310|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TAAAATTCCATTTGCACTTGAGTCCCACTCTATTAA
>2.84|1387376|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TATAAATCAAAATTCAGAACACAGGATGAAGATATTGT
>2.85|1387444|38|NC_017464|PILER-CR,CRISPRCasFinder,CRT
TTCCATAGAATTGTCTCTATGTTTATTGAGTGTATTTC
>2.86|1387512|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT
CTCAGCATTTGGAGACTATGGTGGGACTGGCAGTGG
>2.87|1387578|39|NC_017464|PILER-CR,CRISPRCasFinder,CRT
ACAATTCCCTTTGCAAAAACTTTTATTTTTGGAATAAAA

CRISPR arrays and Neighbor proteins around NC_017464_2

CRISPR arrays

The CRISPR arrays of NC_017464_2

>merge|NC_017464|2|1381767-1387646|PILER-CR,CRISPRCasFinder,CRT
GTTTTAATCGAACCATAGTGGAATTGAGACAATGTTGAAATCACCTTTAGTAAGAGAAACCTTCTCTGTTTTAATCGAACCATAGTGGAATTGAGACAGAAAATCGAGCTTCGTTATTAGCATCAATTATTAGGTAGTTTTAATCGAACCATAGTGGAATTGAGACTTTGGAGGGATATAAAATACAGGTACTTTCCTAATGGAGTTTTAATCGAACCATAGTGGAATTGAGACCAGTATAGATTTAAAGAAATAATTATCGTTCTTGAAGAAGTTTTAATCGAACCATAGTGGAATTGAGACTGCTGAAGCTAAAGCAAAAGCAGAAATAAGTAATAAAGTTTTAATCGAACCATAGTGGAATTGAGACCAAGGGAAAGGGATAAGGTTTTTTCAACAAGTTCCAGTTTTAATCGAACCATAGTGGAATTGAGACTGAAGATTTATTTTGATTTTATGTCGCTCTGATTTTGTTTTAATCGAACCATAGTGGAATTGAGACGCAAAATTGACAGTCCTACTATGCCAATAAATGCCATAGGTTTTAATCGAACCATAGTGGAATTGAGACCTGATAATTTGTAATAAATATTTTTGTTTTTTTCATTAGTTTTAATCGAACCATAGTGGAATTGAGACATCGACCTAATCGTTTTCTTTGATATTAAGCTTGACTGTTTTAATCGAACCATAGTGGAATTGAGACAGCACTTTGCTTTTTCTCATATCGATTAATTTAGTCAGTTTTAATCGAACCATAGTGGAATTGAGACACAGTAGTTTTCTCAACTGTTCCATCCTCTTTCATGTGTTTTAATCGAACCATAGTGGAATTGAGACAAAAAATCAGATTTTTTGAGAAAAAGCACTTTGCTTTGTTTTAATCGAACCATAGTGGAATTGAGACTTCCTGAAAATTATTTCCAAAATTTCTGATTAGGTCGGTTTTAATCGAACCATAGTGGAATTGAGACCCTGGCAAATGCATCATAATTGCACCGACGCCCTCAGGTTTTAATCGAACCATAGTGGAATTGAGACCCTGGTCAGTTGTAGTCTGATGCGGAATTTTTCCAGTTTTAATCGAACCATAGTGGAATTGAGACCTTGGAGAAGCATTTTGAGTTGCTTCGTTTAGCATTGTTTTAATCGAACCATAGTGGAATTGAGACAAGCTTCGGATCGAACACTGCAATTGCGCCAACAGTAGTTTTAATCGAACCATAGTGGAATTGAGACTGCTTCAGGATTAGCCGATGTCATATCACCGGAGAACGTTTTAATCGAACCATAGTGGAATTGAGACTTTGGATAAAATCAATATCCAAATTTTTTTGACTATGTTTTAATCGAACCATAGTGGAATTGAGACCCATATCAAAAGGATATTTATATTAAAAATGCTTAGTTTTAATCGAACCATAGTGGAATTGAGACGAGAAACTCTTCAAGGGATAAATCGGTTTTTTCAACAAGGTTTTAATCGAACCATAGTGGAATTGAGACCAGGTCTCCGACTCTTTCACAAATTGCCCCAAGTTGGGGGTTTTAATCGAACCATAGTGGAATTGAGACATCAAAATAATTCGTCTAGTTTGTGTTCTGTTTGGTTTTAATCGAACCATAGTGGAATTGAGACTTTCTTTCGGTAGTAGGAACATAAAAGTTCCATTTATGTTTTAATCGAACCATAGTGGAATTGAGACTACTACTTTATAAATTTATAATTTATTATTGTCTAAAGTTTTAATCGAACCATAGTGGAATTGAGACAAATATCCTAATTATCAAACAATAATTATTCGGATAAGTTTTAATCGAACCATAGTGGAATTGAGACACTCTCTCAACTTGCTCACGAAGGATGTTAATTTCCTTGTTTTAATCGAACCATAGTGGAATTGAGACTACTACTTTATAAATTTATAATTTATTATTGTCTAAAGTTTTAATCGAACCATAGTGGAATTGAGACAAATATCCTAATTATCAAACAATAATTATTCGGATAAGTTTTAATCGAACCATAGTGGAATTGAGACCCTTTCAAGGACTGGTCTTTCTCCACCGCCCGCCTTCCGTTTTAATCGAACCATAGTGGAATTGAGACGCAAATCCAATTAATACAGCTTTCAATTGGATCAACCGTTTTAATCGAACCATAGTGGAATTGAGACTATTTTTTCGATCTGTTCACGAAGGAGGTTTATCTCCGGTTTTAATCGAACCATAGTGGAATTGAGACCTTGCAACCAATCCGATTATATCAGATGGAGCTTCTGAGGTTTTAATCGAACCATAGTGGAATTGAGACTCAGCTTGATGCACAGGAAGTTTATGTTCAGCCAGTTTTAATCGAACCATAGTGGAATTGAGACGGACTTGGAACTTTTATATCCCTTGCGAGAGTGTTTTGTTTTAATCGAACCATAGTGGAATTGAGACCCAAAAACCTCAGCTTGAGATTATTATAATAATAAAATAGTTTTAATCGAACCATAGTGGAATTGAGACGTATTGATTCGGAGGTCTAATTCCTCCCAATCTTCTGTTTTAATCGAACCATAGTGGAATTGAGACCCAAATATATCTTTATGTTATTAGGATATTTATTGGTTTTAATCGAACCATAGTGGAATTGAGACAAACTTTTATTTTTGGAATAAAACCATCAAGATTTTTAGTTTTAATCGAACCATAGTGGAATTGAGACCCGATGATTAAAGCCAAGCCATTTGGCTGCTTTTTTAGTTTTAATCGAACCATAGTGGAATTGAGACCATATCTTCTCCTTATTAAATTATTAATTAGTTAAGTTTTAATCGAACCATAGTGGAATTGAGACGCAGCTTCAGGCTCATACTTAATCGCAATTGAATTGGTTTTAATCGAACCATAGTGGAATTGAGACAGAAACGAATCAGCTTTTCCGGGATTTGCGGTAATGTGTTTTAATCGAACCATAGTGGAATTGAGACAAAGCTTTACCAGTTCCTCGGCATGGCCGATATTTATCGGTTTTAATCGAACCATAGTGGAATTGAGACTAAATTGCCCATCTTTAAGGTAAGACTCATACAACAGTTTTAATCGAACCATAGTGGAATTGAGACTTACTTGGCCAGCGTAGAATTCGTCAAGGCGTTTTTGTTTTAATCGAACCATAGTGGAATTGAGACTTTGTTTATCACCCCAATTAGTTGAGGGGTGATTTGATAGTTTTAATCGAACCATAGTGGAATTGAGACGCATTCTTTAACTTCCACTCGTTACGAATGATTTTGGTTTTAATCGAACCATAGTGGAATTGAGACCCTCCTTTCAAGGACTGGTTTTTCTCCACCGCCCGCGTTTTAATCGAACCATAGTGGAATTGAGACGGCGATATTATCAAGGTAACATATATCGGTTCAAACAGTTTTAATCGAACCATAGTGGAATTGAGACCGGGATCTGCCGGTATTTGCCCAAGTTTTGAAGTTTCCGTTTTAATCGAACCATAGTGGAATTGAGACCATTTGAGCTATCTTAATAATGGTCGGGCGATTAGATACGTTTTAATCGAACCATAGTGGAATTGAGACTGTTTTTTCTCCAAGTATCTTTTCTCAAAGGCCTTAGGTTTTAATCGAACCATAGTGGAATTGAGACTTTTTAGTTGTTTTCATGTTTTTCTCCTTTTTATGTGTTTTAATCGAACCATAGTGGAATTGAGACTTTCGTAATTCTAAGACCCAACAAGGGATTCACCCTTGGTTTTAATCGAACCATAGTGGAATTGAGACTTGTTCATATAGGTTTTCCTTTGTCTTTTGCGCTTAAAGTTTTAATCGAACCATAGTGGAATTGAGACTGTCATTTTCTTTGATGACGTATTGTATTGGTTCATCAAGTTTTAATCGAACCATAGTGGAATTGAGACAACTGTGGCATAATGAATGCCTGTTTTATATGATTCTGTTTTAATCGAACCATAGTGGAATTGAGACAACCGGCCCAACCACTGGTACCTAATGTCCTTATGGAGTTTTAATCGAACCATAGTGGAATTGAGACAAGACTTGCTCAGGTCTTATATTTATTCCTCTAGTTCGTTTTAATCGAACCATAGTGGAATTGAGACCTGACCAGCCCTTTTGAAATAAATTCATTGATGAATAGGTTTTAATCGAACCATAGTGGAATTGAGACTATCTCATGTTCTTGCAGGTCTCTCACTTCGTTGTCCTGGTTTTAATCGAACCATAGTGGAATTGAGACCGCTTTTCTCTCCATTTCCTCAGTAAAAGCAAGCATCGTTTTAATCGAACCATAGTGGAATTGAGACTTGCCAAATACACCGTCATCTTTCAGTAATCTGACTTTAAGGTTTTAATCGAACCATAGTGGAATTGAGACTGTCATTACAAATGCTTTAATAATATAGATACCAAGTGTAGTTTTAATCGAACCATAGTGGAATTGAGACAAATGTTTAATAATGATACACTATCCATAGGTTCATTAGTTTTAATCGAACCATAGTGGAATTGAGACGATTAAGTGGACCGCACGGATTAGGTGCGTGTTAATCCGTTTTAATCGAACCATAGTGGAATTGAGACTACCTTTACTGCTGTTCTTTCCGGAGAATCAATAATAGTTTTAATCGAACCATAGTGGAATTGAGACCAAAGCTTGTTCTTGTTCTGAATATCTCCCTGATTAGTTTTAATCGAACCATAGTGGAATTGAGACGAAAGCTTGCCACAATATAGATGTTATATGTATCAAGCGGGTTTTAATCGAACCATAGTGGAATTGAGACTGGTGAAACACATTATTATAATCACCCTCACGGACGTAGTTTTAATCGAACCATAGTGGAATTGAGACTTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAAGTTTTAATCGAACCATAGTGGAATTGAGACCCGTTGGAGCTGGCAGCATTTCTATGAAGGTGCAAAGGTTTTAATCGAACCATAGTGGAATTGAGACTTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAAGTTTTAATCGAACCATAGTGGAATTGAGACTGCGCAATAAAACATATCTAACATCCTTTTATCTTCAGTTTTAATCGAACCATAGTGGAATTGAGACAATTACTATTTTGTATTTGTTCGGCTTCCCGTATAGCCGTTTTAATCGAACCATAGTGGAATTGAGACATATTTCGGGAATTGCTTGTTGTAATTGAAATAATTTTGTTTTAATCGAACCATAGTGGAATTGAGACGCAATATGGCCCGCTTCCATTGATTTATGGAGACATGTTTTAATCGAACCATAGTGGAATTGAGACTCATTGCACCTCTATTTTATTTTTATGTTAGACCCGTTTTAATCGAACCATAGTGGAATTGAGACCGTTTGAACATTGGCACCAGGTCTTACAGATACTGGAGTTTTAATCGAACCATAGTGGAATTGAGACCCGGTAATGGTATTCTTATTTTCTGCCGGGATCTGCGTTTTAATCGAACCATAGTGGAATTGAGACTAAAATTCCATTTGCACTTGAGTCCCACTCTATTAAGTTTTAATCGAACCATAGTGGAATTGAGACTATAAATCAAAATTCAGAACACAGGATGAAGATATTGTGTTTTAATCGAACCATAGTGGAATTGAGACTTCCATAGAATTGTCTCTATGTTTATTGAGTGTATTTCGTTTTAATCGAACCATAGTGGAATTGAGACCTCAGCATTTGGAGACTATGGTGGGACTGGCAGTGGGTTTTAATCGAACCATAGTGGAATTGAGACACAATTCCCTTTGCAAAAACTTTTATTTTTGGAATAAAAGTTTTAATCGAACCATAGTGGAATTGAGAC

>NC_017464|2|1|1381767-1387646|PILER-CR
GTTTTAATCGAACCATAGTGGAATTGAGAC	AATGTTGAAATCACCTTTAGTAAGAGAAACCTTCTCT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AGAAAATCGAGCTTCGTTATTAGCATCAATTATTAGGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGGAGGGATATAAAATACAGGTACTTTCCTAATGGA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAGTATAGATTTAAAGAAATAATTATCGTTCTTGAAGAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGCTGAAGCTAAAGCAAAAGCAGAAATAAGTAATAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAAGGGAAAGGGATAAGGTTTTTTCAACAAGTTCCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGAAGATTTATTTTGATTTTATGTCGCTCTGATTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAAAATTGACAGTCCTACTATGCCAATAAATGCCATAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTGATAATTTGTAATAAATATTTTTGTTTTTTTCATTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	ATCGACCTAATCGTTTTCTTTGATATTAAGCTTGACT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AGCACTTTGCTTTTTCTCATATCGATTAATTTAGTCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	ACAGTAGTTTTCTCAACTGTTCCATCCTCTTTCATGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAAAAATCAGATTTTTTGAGAAAAAGCACTTTGCTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTCCTGAAAATTATTTCCAAAATTTCTGATTAGGTCG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTGGCAAATGCATCATAATTGCACCGACGCCCTCAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTGGTCAGTTGTAGTCTGATGCGGAATTTTTCCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTTGGAGAAGCATTTTGAGTTGCTTCGTTTAGCATT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAGCTTCGGATCGAACACTGCAATTGCGCCAACAGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGCTTCAGGATTAGCCGATGTCATATCACCGGAGAAC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGGATAAAATCAATATCCAAATTTTTTTGACTAT
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCATATCAAAAGGATATTTATATTAAAAATGCTTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GAGAAACTCTTCAAGGGATAAATCGGTTTTTTCAACAAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAGGTCTCCGACTCTTTCACAAATTGCCCCAAGTTGGGG
GTTTTAATCGAACCATAGTGGAATTGAGAC	ATCAAAATAATTCGTCTAGTTTGTGTTCTGTTTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTCTTTCGGTAGTAGGAACATAAAAGTTCCATTTAT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TACTACTTTATAAATTTATAATTTATTATTGTCTAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAATATCCTAATTATCAAACAATAATTATTCGGATAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	ACTCTCTCAACTTGCTCACGAAGGATGTTAATTTCCTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TACTACTTTATAAATTTATAATTTATTATTGTCTAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAATATCCTAATTATCAAACAATAATTATTCGGATAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTTTCAAGGACTGGTCTTTCTCCACCGCCCGCCTTCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAAATCCAATTAATACAGCTTTCAATTGGATCAACC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TATTTTTTCGATCTGTTCACGAAGGAGGTTTATCTCCG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTTGCAACCAATCCGATTATATCAGATGGAGCTTCTGAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TCAGCTTGATGCACAGGAAGTTTATGTTCAGCCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GGACTTGGAACTTTTATATCCCTTGCGAGAGTGTTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCAAAAACCTCAGCTTGAGATTATTATAATAATAAAATA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GTATTGATTCGGAGGTCTAATTCCTCCCAATCTTCT
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCAAATATATCTTTATGTTATTAGGATATTTATTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAACTTTTATTTTTGGAATAAAACCATCAAGATTTTTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCGATGATTAAAGCCAAGCCATTTGGCTGCTTTTTTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CATATCTTCTCCTTATTAAATTATTAATTAGTTAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAGCTTCAGGCTCATACTTAATCGCAATTGAATTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	AGAAACGAATCAGCTTTTCCGGGATTTGCGGTAATGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAAGCTTTACCAGTTCCTCGGCATGGCCGATATTTATCG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TAAATTGCCCATCTTTAAGGTAAGACTCATACAACA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTACTTGGCCAGCGTAGAATTCGTCAAGGCGTTTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGTTTATCACCCCAATTAGTTGAGGGGTGATTTGATA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCATTCTTTAACTTCCACTCGTTACGAATGATTTTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTCCTTTCAAGGACTGGTTTTTCTCCACCGCCCGC
GTTTTAATCGAACCATAGTGGAATTGAGAC	GGCGATATTATCAAGGTAACATATATCGGTTCAAACA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CGGGATCTGCCGGTATTTGCCCAAGTTTTGAAGTTTCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CATTTGAGCTATCTTAATAATGGTCGGGCGATTAGATAC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGTTTTTTCTCCAAGTATCTTTTCTCAAAGGCCTTAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTTTAGTTGTTTTCATGTTTTTCTCCTTTTTATGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTCGTAATTCTAAGACCCAACAAGGGATTCACCCTTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTGTTCATATAGGTTTTCCTTTGTCTTTTGCGCTTAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGTCATTTTCTTTGATGACGTATTGTATTGGTTCATCAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AACTGTGGCATAATGAATGCCTGTTTTATATGATTCT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AACCGGCCCAACCACTGGTACCTAATGTCCTTATGGA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAGACTTGCTCAGGTCTTATATTTATTCCTCTAGTTC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTGACCAGCCCTTTTGAAATAAATTCATTGATGAATAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TATCTCATGTTCTTGCAGGTCTCTCACTTCGTTGTCCTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CGCTTTTCTCTCCATTTCCTCAGTAAAAGCAAGCATC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTGCCAAATACACCGTCATCTTTCAGTAATCTGACTTTAAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGTCATTACAAATGCTTTAATAATATAGATACCAAGTGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAATGTTTAATAATGATACACTATCCATAGGTTCATTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GATTAAGTGGACCGCACGGATTAGGTGCGTGTTAATCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TACCTTTACTGCTGTTCTTTCCGGAGAATCAATAATA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAAAGCTTGTTCTTGTTCTGAATATCTCCCTGATTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GAAAGCTTGCCACAATATAGATGTTATATGTATCAAGCGG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGGTGAAACACATTATTATAATCACCCTCACGGACGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCGTTGGAGCTGGCAGCATTTCTATGAAGGTGCAAAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGCGCAATAAAACATATCTAACATCCTTTTATCTTCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AATTACTATTTTGTATTTGTTCGGCTTCCCGTATAGCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	ATATTTCGGGAATTGCTTGTTGTAATTGAAATAATTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAATATGGCCCGCTTCCATTGATTTATGGAGACAT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TCATTGCACCTCTATTTTATTTTTATGTTAGACCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CGTTTGAACATTGGCACCAGGTCTTACAGATACTGGA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCGGTAATGGTATTCTTATTTTCTGCCGGGATCTGC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TAAAATTCCATTTGCACTTGAGTCCCACTCTATTAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TATAAATCAAAATTCAGAACACAGGATGAAGATATTGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTCCATAGAATTGTCTCTATGTTTATTGAGTGTATTTC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTCAGCATTTGGAGACTATGGTGGGACTGGCAGTGG
GTTTTAATCGAACCATAGTGGAATTGAGAC	ACAATTCCCTTTGCAAAAACTTTTATTTTTGGAATAAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC

>NC_017464|2|2|1381767-1387646|CRISPRCasFinder
GTTTTAATCGAACCATAGTGGAATTGAGAC	AATGTTGAAATCACCTTTAGTAAGAGAAACCTTCTCT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AGAAAATCGAGCTTCGTTATTAGCATCAATTATTAGGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGGAGGGATATAAAATACAGGTACTTTCCTAATGGA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAGTATAGATTTAAAGAAATAATTATCGTTCTTGAAGAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGCTGAAGCTAAAGCAAAAGCAGAAATAAGTAATAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAAGGGAAAGGGATAAGGTTTTTTCAACAAGTTCCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGAAGATTTATTTTGATTTTATGTCGCTCTGATTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAAAATTGACAGTCCTACTATGCCAATAAATGCCATAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTGATAATTTGTAATAAATATTTTTGTTTTTTTCATTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	ATCGACCTAATCGTTTTCTTTGATATTAAGCTTGACT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AGCACTTTGCTTTTTCTCATATCGATTAATTTAGTCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	ACAGTAGTTTTCTCAACTGTTCCATCCTCTTTCATGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAAAAATCAGATTTTTTGAGAAAAAGCACTTTGCTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTCCTGAAAATTATTTCCAAAATTTCTGATTAGGTCG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTGGCAAATGCATCATAATTGCACCGACGCCCTCAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTGGTCAGTTGTAGTCTGATGCGGAATTTTTCCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTTGGAGAAGCATTTTGAGTTGCTTCGTTTAGCATT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAGCTTCGGATCGAACACTGCAATTGCGCCAACAGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGCTTCAGGATTAGCCGATGTCATATCACCGGAGAAC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGGATAAAATCAATATCCAAATTTTTTTGACTAT
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCATATCAAAAGGATATTTATATTAAAAATGCTTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GAGAAACTCTTCAAGGGATAAATCGGTTTTTTCAACAAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAGGTCTCCGACTCTTTCACAAATTGCCCCAAGTTGGGG
GTTTTAATCGAACCATAGTGGAATTGAGAC	ATCAAAATAATTCGTCTAGTTTGTGTTCTGTTTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTCTTTCGGTAGTAGGAACATAAAAGTTCCATTTAT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TACTACTTTATAAATTTATAATTTATTATTGTCTAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAATATCCTAATTATCAAACAATAATTATTCGGATAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	ACTCTCTCAACTTGCTCACGAAGGATGTTAATTTCCTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TACTACTTTATAAATTTATAATTTATTATTGTCTAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAATATCCTAATTATCAAACAATAATTATTCGGATAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTTTCAAGGACTGGTCTTTCTCCACCGCCCGCCTTCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAAATCCAATTAATACAGCTTTCAATTGGATCAACC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TATTTTTTCGATCTGTTCACGAAGGAGGTTTATCTCCG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTTGCAACCAATCCGATTATATCAGATGGAGCTTCTGAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TCAGCTTGATGCACAGGAAGTTTATGTTCAGCCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GGACTTGGAACTTTTATATCCCTTGCGAGAGTGTTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCAAAAACCTCAGCTTGAGATTATTATAATAATAAAATA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GTATTGATTCGGAGGTCTAATTCCTCCCAATCTTCT
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCAAATATATCTTTATGTTATTAGGATATTTATTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAACTTTTATTTTTGGAATAAAACCATCAAGATTTTTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCGATGATTAAAGCCAAGCCATTTGGCTGCTTTTTTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CATATCTTCTCCTTATTAAATTATTAATTAGTTAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAGCTTCAGGCTCATACTTAATCGCAATTGAATTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	AGAAACGAATCAGCTTTTCCGGGATTTGCGGTAATGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAAGCTTTACCAGTTCCTCGGCATGGCCGATATTTATCG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TAAATTGCCCATCTTTAAGGTAAGACTCATACAACA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTACTTGGCCAGCGTAGAATTCGTCAAGGCGTTTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGTTTATCACCCCAATTAGTTGAGGGGTGATTTGATA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCATTCTTTAACTTCCACTCGTTACGAATGATTTTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTCCTTTCAAGGACTGGTTTTTCTCCACCGCCCGC
GTTTTAATCGAACCATAGTGGAATTGAGAC	GGCGATATTATCAAGGTAACATATATCGGTTCAAACA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CGGGATCTGCCGGTATTTGCCCAAGTTTTGAAGTTTCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CATTTGAGCTATCTTAATAATGGTCGGGCGATTAGATAC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGTTTTTTCTCCAAGTATCTTTTCTCAAAGGCCTTAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTTTAGTTGTTTTCATGTTTTTCTCCTTTTTATGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTCGTAATTCTAAGACCCAACAAGGGATTCACCCTTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTGTTCATATAGGTTTTCCTTTGTCTTTTGCGCTTAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGTCATTTTCTTTGATGACGTATTGTATTGGTTCATCAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AACTGTGGCATAATGAATGCCTGTTTTATATGATTCT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AACCGGCCCAACCACTGGTACCTAATGTCCTTATGGA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAGACTTGCTCAGGTCTTATATTTATTCCTCTAGTTC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTGACCAGCCCTTTTGAAATAAATTCATTGATGAATAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TATCTCATGTTCTTGCAGGTCTCTCACTTCGTTGTCCTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CGCTTTTCTCTCCATTTCCTCAGTAAAAGCAAGCATC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTGCCAAATACACCGTCATCTTTCAGTAATCTGACTTTAAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGTCATTACAAATGCTTTAATAATATAGATACCAAGTGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAATGTTTAATAATGATACACTATCCATAGGTTCATTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GATTAAGTGGACCGCACGGATTAGGTGCGTGTTAATCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TACCTTTACTGCTGTTCTTTCCGGAGAATCAATAATA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAAAGCTTGTTCTTGTTCTGAATATCTCCCTGATTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GAAAGCTTGCCACAATATAGATGTTATATGTATCAAGCGG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGGTGAAACACATTATTATAATCACCCTCACGGACGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCGTTGGAGCTGGCAGCATTTCTATGAAGGTGCAAAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGCGCAATAAAACATATCTAACATCCTTTTATCTTCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AATTACTATTTTGTATTTGTTCGGCTTCCCGTATAGCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	ATATTTCGGGAATTGCTTGTTGTAATTGAAATAATTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAATATGGCCCGCTTCCATTGATTTATGGAGACAT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TCATTGCACCTCTATTTTATTTTTATGTTAGACCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CGTTTGAACATTGGCACCAGGTCTTACAGATACTGGA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCGGTAATGGTATTCTTATTTTCTGCCGGGATCTGC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TAAAATTCCATTTGCACTTGAGTCCCACTCTATTAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TATAAATCAAAATTCAGAACACAGGATGAAGATATTGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTCCATAGAATTGTCTCTATGTTTATTGAGTGTATTTC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTCAGCATTTGGAGACTATGGTGGGACTGGCAGTGG
GTTTTAATCGAACCATAGTGGAATTGAGAC	ACAATTCCCTTTGCAAAAACTTTTATTTTTGGAATAAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC

>NC_017464|2|1|1381767-1387646|CRT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AATGTTGAAATCACCTTTAGTAAGAGAAACCTTCTCT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AGAAAATCGAGCTTCGTTATTAGCATCAATTATTAGGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGGAGGGATATAAAATACAGGTACTTTCCTAATGGA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAGTATAGATTTAAAGAAATAATTATCGTTCTTGAAGAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGCTGAAGCTAAAGCAAAAGCAGAAATAAGTAATAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAAGGGAAAGGGATAAGGTTTTTTCAACAAGTTCCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGAAGATTTATTTTGATTTTATGTCGCTCTGATTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAAAATTGACAGTCCTACTATGCCAATAAATGCCATAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTGATAATTTGTAATAAATATTTTTGTTTTTTTCATTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	ATCGACCTAATCGTTTTCTTTGATATTAAGCTTGACT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AGCACTTTGCTTTTTCTCATATCGATTAATTTAGTCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	ACAGTAGTTTTCTCAACTGTTCCATCCTCTTTCATGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAAAAATCAGATTTTTTGAGAAAAAGCACTTTGCTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTCCTGAAAATTATTTCCAAAATTTCTGATTAGGTCG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTGGCAAATGCATCATAATTGCACCGACGCCCTCAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTGGTCAGTTGTAGTCTGATGCGGAATTTTTCCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTTGGAGAAGCATTTTGAGTTGCTTCGTTTAGCATT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAGCTTCGGATCGAACACTGCAATTGCGCCAACAGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGCTTCAGGATTAGCCGATGTCATATCACCGGAGAAC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGGATAAAATCAATATCCAAATTTTTTTGACTAT
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCATATCAAAAGGATATTTATATTAAAAATGCTTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GAGAAACTCTTCAAGGGATAAATCGGTTTTTTCAACAAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAGGTCTCCGACTCTTTCACAAATTGCCCCAAGTTGGGG
GTTTTAATCGAACCATAGTGGAATTGAGAC	ATCAAAATAATTCGTCTAGTTTGTGTTCTGTTTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTCTTTCGGTAGTAGGAACATAAAAGTTCCATTTAT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TACTACTTTATAAATTTATAATTTATTATTGTCTAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAATATCCTAATTATCAAACAATAATTATTCGGATAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	ACTCTCTCAACTTGCTCACGAAGGATGTTAATTTCCTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TACTACTTTATAAATTTATAATTTATTATTGTCTAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAATATCCTAATTATCAAACAATAATTATTCGGATAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTTTCAAGGACTGGTCTTTCTCCACCGCCCGCCTTCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAAATCCAATTAATACAGCTTTCAATTGGATCAACC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TATTTTTTCGATCTGTTCACGAAGGAGGTTTATCTCCG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTTGCAACCAATCCGATTATATCAGATGGAGCTTCTGAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TCAGCTTGATGCACAGGAAGTTTATGTTCAGCCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GGACTTGGAACTTTTATATCCCTTGCGAGAGTGTTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCAAAAACCTCAGCTTGAGATTATTATAATAATAAAATA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GTATTGATTCGGAGGTCTAATTCCTCCCAATCTTCT
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCAAATATATCTTTATGTTATTAGGATATTTATTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAACTTTTATTTTTGGAATAAAACCATCAAGATTTTTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCGATGATTAAAGCCAAGCCATTTGGCTGCTTTTTTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CATATCTTCTCCTTATTAAATTATTAATTAGTTAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAGCTTCAGGCTCATACTTAATCGCAATTGAATTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	AGAAACGAATCAGCTTTTCCGGGATTTGCGGTAATGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAAGCTTTACCAGTTCCTCGGCATGGCCGATATTTATCG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TAAATTGCCCATCTTTAAGGTAAGACTCATACAACA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTACTTGGCCAGCGTAGAATTCGTCAAGGCGTTTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGTTTATCACCCCAATTAGTTGAGGGGTGATTTGATA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCATTCTTTAACTTCCACTCGTTACGAATGATTTTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCTCCTTTCAAGGACTGGTTTTTCTCCACCGCCCGC
GTTTTAATCGAACCATAGTGGAATTGAGAC	GGCGATATTATCAAGGTAACATATATCGGTTCAAACA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CGGGATCTGCCGGTATTTGCCCAAGTTTTGAAGTTTCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CATTTGAGCTATCTTAATAATGGTCGGGCGATTAGATAC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGTTTTTTCTCCAAGTATCTTTTCTCAAAGGCCTTAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTTTAGTTGTTTTCATGTTTTTCTCCTTTTTATGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTCGTAATTCTAAGACCCAACAAGGGATTCACCCTTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTGTTCATATAGGTTTTCCTTTGTCTTTTGCGCTTAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGTCATTTTCTTTGATGACGTATTGTATTGGTTCATCAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AACTGTGGCATAATGAATGCCTGTTTTATATGATTCT
GTTTTAATCGAACCATAGTGGAATTGAGAC	AACCGGCCCAACCACTGGTACCTAATGTCCTTATGGA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAGACTTGCTCAGGTCTTATATTTATTCCTCTAGTTC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTGACCAGCCCTTTTGAAATAAATTCATTGATGAATAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TATCTCATGTTCTTGCAGGTCTCTCACTTCGTTGTCCTG
GTTTTAATCGAACCATAGTGGAATTGAGAC	CGCTTTTCTCTCCATTTCCTCAGTAAAAGCAAGCATC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTGCCAAATACACCGTCATCTTTCAGTAATCTGACTTTAAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGTCATTACAAATGCTTTAATAATATAGATACCAAGTGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AAATGTTTAATAATGATACACTATCCATAGGTTCATTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GATTAAGTGGACCGCACGGATTAGGTGCGTGTTAATCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TACCTTTACTGCTGTTCTTTCCGGAGAATCAATAATA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CAAAGCTTGTTCTTGTTCTGAATATCTCCCTGATTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	GAAAGCTTGCCACAATATAGATGTTATATGTATCAAGCGG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGGTGAAACACATTATTATAATCACCCTCACGGACGTA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCGTTGGAGCTGGCAGCATTTCTATGAAGGTGCAAAG
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTTGCTGAGGCTATCCTTCAGAATAGCCTCAAACAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TGCGCAATAAAACATATCTAACATCCTTTTATCTTCA
GTTTTAATCGAACCATAGTGGAATTGAGAC	AATTACTATTTTGTATTTGTTCGGCTTCCCGTATAGCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	ATATTTCGGGAATTGCTTGTTGTAATTGAAATAATTTT
GTTTTAATCGAACCATAGTGGAATTGAGAC	GCAATATGGCCCGCTTCCATTGATTTATGGAGACAT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TCATTGCACCTCTATTTTATTTTTATGTTAGACCC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CGTTTGAACATTGGCACCAGGTCTTACAGATACTGGA
GTTTTAATCGAACCATAGTGGAATTGAGAC	CCGGTAATGGTATTCTTATTTTCTGCCGGGATCTGC
GTTTTAATCGAACCATAGTGGAATTGAGAC	TAAAATTCCATTTGCACTTGAGTCCCACTCTATTAA
GTTTTAATCGAACCATAGTGGAATTGAGAC	TATAAATCAAAATTCAGAACACAGGATGAAGATATTGT
GTTTTAATCGAACCATAGTGGAATTGAGAC	TTCCATAGAATTGTCTCTATGTTTATTGAGTGTATTTC
GTTTTAATCGAACCATAGTGGAATTGAGAC	CTCAGCATTTGGAGACTATGGTGGGACTGGCAGTGG
GTTTTAATCGAACCATAGTGGAATTGAGAC	ACAATTCCCTTTGCAAAAACTTTTATTTTTGGAATAAAA
GTTTTAATCGAACCATAGTGGAATTGAGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017464.1|WP_014560098.1|1397845_1398298_-|DNA-binding-protein	unknown	unknown	gnl|CDD|223829
NC_017464.1|WP_014560070.1|1374880_1376077_+|hypothetical-protein	unknown	unknown	gnl|CDD|379133
NC_017464.1|WP_041294386.1|1378044_1379115_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_017464.1|WP_083832019.1|1373614_1374202_+|hypothetical-protein	unknown	unknown	gnl|CDD|376616
NC_017464.1|WP_014560096.1|1395522_1396299_+|class-II-glutamine-amidotransferase	unknown	unknown	gnl|CDD|372525
NC_017464.1|WP_014560101.1|1402125_1403178_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl|CDD|378065
NC_017464.1|WP_014560068.1|1372302_1373388_+|TIGR02584-family-CRISPR-associated-protein	csx1	pfam09623_csx1_CAS-III	gnl|CDD|187872
NC_017464.1|WP_014560067.1|1371256_1372306_+|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	gnl|CDD|312526
NC_017464.1|WP_014560102.1|1403204_1403924_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014560066.1|1370890_1371256_+|hypothetical-protein	csx20	cls000118_csx20_CAS-I:CAS-III	unknown
NC_017464.1|WP_014560095.1|1394646_1395507_+|HNH-endonuclease	unknown	unknown	gnl|CDD|225724
NC_017464.1|WP_014560072.1|1377019_1377184_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_041294075.1|1379119_1379386_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_017464.1|WP_014560090.1|1387675_1389142_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014560100.1|1399559_1402109_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224400
NC_017464.1|WP_014560071.1|1376078_1377017_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014560093.1|1393170_1393461_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014560099.1|1398396_1399485_-|Fic-family-protein	unknown	unknown	gnl|CDD|225718
NC_017464.1|WP_014560094.1|1393478_1394633_+|DUF2130-domain-containing-protein	unknown	unknown	gnl|CDD|370744
NC_017464.1|WP_014560075.1|1379455_1381207_+|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017464.1|WP_014560068.1|1372302_1373388_+|TIGR02584-family-CRISPR-associated-protein	csx1	pfam09623_csx1_CAS-III	1.5e-41	137.3	0.0
NC_017464.1|WP_041294075.1|1379119_1379386_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5.8e-29	94.9	0.5
NC_017464.1|WP_041294386.1|1378044_1379115_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	3.1e-105	346.6	3.6
NC_017464.1|WP_014560066.1|1370890_1371256_+|hypothetical-protein	csx20	cls000118_csx20_CAS-I:CAS-III	7.4e-63	205.4	0.4
NC_017464.1|WP_014560067.1|1371256_1372306_+|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	3.8e-45	148.8	2.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017464.1|WP_014560098.1|1397845_1398298_-|DNA-binding-protein	gnl|CDD|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	0.000106948
NC_017464.1|WP_014560070.1|1374880_1376077_+|hypothetical-protein	gnl|CDD|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	0.00452794
NC_017464.1|WP_041294386.1|1378044_1379115_+|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.48826e-120
NC_017464.1|WP_083832019.1|1373614_1374202_+|hypothetical-protein	gnl|CDD|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	3.58559e-07
NC_017464.1|WP_014560096.1|1395522_1396299_+|class-II-glutamine-amidotransferase	gnl|CDD|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	2.6453e-79
NC_017464.1|WP_014560101.1|1402125_1403178_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl|CDD|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	5.62812e-15
NC_017464.1|WP_014560068.1|1372302_1373388_+|TIGR02584-family-CRISPR-associated-protein	gnl|CDD|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	1.80811e-38
NC_017464.1|WP_014560095.1|1394646_1395507_+|HNH-endonuclease	gnl|CDD|225724	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms].	9.27216e-15
NC_017464.1|WP_014560094.1|1393478_1394633_+|DUF2130-domain-containing-protein	gnl|CDD|370744	pfam09903, DUF2130, Uncharacterized protein conserved in bacteria (DUF2130). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.51979e-12
NC_017464.1|WP_041294075.1|1379119_1379386_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.87119e-30
NC_017464.1|WP_014560100.1|1399559_1402109_-|ATP-binding-protein	gnl|CDD|224400	COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.72735e-33
NC_017464.1|WP_014560099.1|1398396_1399485_-|Fic-family-protein	gnl|CDD|225718	COG3177, COG3177, Fic family protein [Function unknown].	5.75455e-48
NC_017464.1|WP_014560067.1|1371256_1372306_+|DUF1887-family-protein	gnl|CDD|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	1.70127e-34

Protein sequences

>NC_017464.1|WP_014560075.1|1379455_1381207_+|hypothetical-protein
MLFIISTSFDNIKNDGSFFWGENYFPQIRNYIPLNTTDVISITEGIIFFNKASQKEKCALKIKINQTHITRVYLKIFYTVTEQLNYKSYQIRNAIKQYFQKNSVLELPFCSAVENEKFYLLLEDGKLFSELSFYEEKNNWEEIYKILESYMPVEKSVLWNKPEALNRFSFATAKLSECTENLKRKFPDNEKRKEFIKQKKYFRELTLKLRVRCIELNPDNPAYYSNLAYTYYQSVNELNTPNGRRDGNLIRDAEKAIEYFDKALILDNNRIPDIYRKAMLLSEILPTHTLYKSDLNDSVNEESQIKEKYLSAVEMIQRGIEEFIKLTKIYENLSEKAVDNSLVPELKNHYKKYYTKALYHIAQKKLKLTKINFNLFNILYGYKPIQCEPDKLNSKVANLNIANSYIEKCIEADYTKKKEEKYLIDLVECDNFIAGVYKAYLKALIETYLFVLTEKTKHLINAKDYFHKALEMNFPLNQKNQNKMFIIEKLAVLNLIERKYEAAIKLLEPIYKKSIQKNSGRFPLYAAFTLSIAYAVIGDKQRATQIIEEHLNCGNKIFEHKFLKLKEHLDNKVQFIKSKEKNE
>NC_017464.1|WP_041294075.1|1379119_1379386_+|CRISPR-associated-endonuclease-Cas2
MFYIAVYDITNQKRLPKVLKTFRKYMNWVQNSAFEGELTAKQFQSLKDELLEIINKEKDSIIFYYAEEQKHIGKKILGVEKNEITQFF
>NC_017464.1|WP_041294386.1|1378044_1379115_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKNNIYIFSNSILSRKDDSLVLDSIPQTDAIHETDFYETEGIILPAPKTDGSGNPRHIPAESVEAIYTFGEVRFNTQFFKCVGFYEIPVHIFNYYGNYVGSFLPASANGSGEIQILQYKAYIDNYKRITIAKSIIDAAIKNILFNLKSYTYSGIDLDETINTIASIQEQVRFTDSIQELMGFEGTARNTYYSAWQNIFKQETDFEKRIKNPPVGIINSLISFGNSLLYAVCLSEIYRTRLNPFIGFIHETGDNKHPLVYDISEIFKPVIVDKVIFRVINLNIIKPDDFKQTDKGLRLKDDARKKFVEEFENKLSSIIHHKRINRRISLRSLIRMECYNLINYLTGKLKSYDPYRAN
>NC_017464.1|WP_014560072.1|1377019_1377184_+|hypothetical-protein
MNINKFRSILYFAAKILGDVNAVQKGKIGQRIVRRTAGRASAKFLQKIFRYLLR
>NC_017464.1|WP_014560071.1|1376078_1377017_+|hypothetical-protein
MTVKKIIQTLFVLLIPISQIIFNTSCNSDVKSEQNESSAISYNKYFKNFNITILLDLSDRISNRKNPGQYKKDIVFVNNVLDAFKSYLKSKGVVQSEDRIKIIFYPYSNYEIYQQIADSLNINFSEYGFPERKKLFEEISSIYNRQLNNLYAFASNAKSYPGSDLFNYFKHRVTDDCIIADSSFINLLVILTDGYLYDVNSKYQQGNRFSFLIPEANHIQIFRKMNNWEEVFEKNDYGIINLSNDLSDLYVLVGEFNPASNSPKDFDILKKYWSGWLESQNVKKDHYKILKTDLNTLNRNVVFSFFNKIISQ
>NC_017464.1|WP_014560070.1|1374880_1376077_+|hypothetical-protein
MSNILSMQQDASNNLNPEFYENDFETMGFIDAGKVGGSTSAFNISLERFYSRLLLNKDSKQYDIDVKNSEAETRIKLIKEKIETHKNEIDRLQNKELPEAQLILKKANDDLSDFKVNPAKYVKVEKDNLLLWLYGILSLFIAVFLYFFYSSVIYSAVFRDVSISKFTIFDSIFYPKSIEEAYSKGLAALMIVLFSPFIFLALGLAIEHIKTKNSNKYRFTWIGVAIFTFIVDALLAYHISERIYNAKAINSFGNVKPFSIGDAIVDLNFWIIIALGFCVYLLFGYIFSLYTEQRLNKNKFDETERMMKGKVASAFQHIENIKNNIRTLEQEVYSLNISITEIEKEYDKIFYSPNELIKIISDFALGWVKYLQNAKTPESEIQKIEISLNNFYSEKGIK
>NC_017464.1|WP_083832019.1|1373614_1374202_+|hypothetical-protein
MNKFFHIRHLPHLHFEEGIYFITARLYDPNLFKTQNKQIKIKKLNDLPESDFQNHFILYDESLNKQETKINYLKKPEIAQILANEFHQYDGKDYNLIAYTILSNHFHLIFELLKGNTGISSIMKKIKGRSSLFINRKLNRAGKLWQDESYDRWVRDEKELYFIIKYILENPIKAGLASNWYDWKFTYCKPEFLVL
>NC_017464.1|WP_014560068.1|1372302_1373388_+|TIGR02584-family-CRISPR-associated-protein
MKTKNILICVSGLTPQIVTETLFCLSVKEKIPIDEIYVLTTARGREVILGRDKHPATPKTPLKKELENLCKQYKLKKPLFQENDDHIIVAKEESIELPDIRSDKDNILFPNKVCEFLRLKTSDPRNILFCSITGGRKSMSVHLANALSIFAREKDRLVHVLTKEEHEFKGFYPQTKAEIKDLELSDIPFVRLRSLLSAELKGKELLKSNFDEIVRFTQAQLKSLSPSNKMILEMERRELRFGNDRITLEPMEFLFYYFFVDSKLRGLSNISVQQFTSDETRNQFIEYFQVYYENYHIKQKTWYKKGFSKEDFRSKRSKVNLKIKELIEDDDISSNYLIDVNRKYGESTYYIKADKDRFIIK
>NC_017464.1|WP_014560067.1|1371256_1372306_+|DUF1887-family-protein
MNTIFCLVSRQAMANVLPVLMFKPKNVFLLATPEEKSCADNLEKLFKSKKINVQRKDGLDAYDYIGFKNFVKQQLEMQSDDIWLNVTGGTKLMALAAYEAFAEKDKKIIYCDTEHQKIISLFPDYSVTELKAELTIEDYLNSYGYSIEEIRQIESVEDYFDLFSFIEYNNSMSSFIEMFNTIREHLASENKVKQPKFTVTSNDQLFQFQKNYDKYFIQFGKQKKSSIKVELTNFKSGDWLEYYIFYILKKKQNLSPLVGVKLKNQEGVENEIDVMVLKDYRLNIFSCKSGKKDNQFDLYQLETLRSITSGTFGKGIFVTANRHSEKFLNRAKELSIMVIQVNNKLNFDL
>NC_017464.1|WP_014560066.1|1370890_1371256_+|hypothetical-protein
MLINLSNHPKNKWSEKQLIAALRKYKSVVDLPFPLISPNANTLQVKKKAEKYLKQILKLLKSSEDKKNAVHLMGEFTFVFHLATMLKNKSISTIVSTTNRIVEEREGKKIVTFNFVRFREY
>NC_017464.1|WP_014560090.1|1387675_1389142_+|hypothetical-protein
MKNKLKNIIKYIGIGITSGLTIITPTKAQSTEYNKPTTEIIQEGDNIIIPEHKLTEFIKNNKQEKNNKITKKTLEEFIKDGYITNVLTKEPIQGIETKLVTYTPFPTDTIGPVTTNSQGYYTFTITGINEQKETKNIGTIEYINGTAKITVNNYKKIKITTYDIQGKEITRTTEKEINGTENINLKLPIGETITKIEIDNKTYTNIHINDGKNHYVKKGKNKEQIIEEQYKKLNKTQTLIGLINLQSPNNQYHRYYAVVDYDGVITGNKRFDINLIPRIPLENPIIDPGYTTIPYINTIRDLMWYSSRIEDEWDNRLAGKTLYPIKIYIDSSNAPTGGITSARKIIQYFQDSLDIHPDSLIQETPINIEPNFNNGFSAMKIIWTDSTQTNRLNSLLTFIFSSSHETFIGGKIYIDTNKVTTEENMEKYIARLIQLYITGGVYPINNQNYLAYTTGNRIGPTKRPNNDEKKWIKIERYHKPYYMNRVYP
>NC_017464.1|WP_014560093.1|1393170_1393461_+|hypothetical-protein
MKTNLLNILSEILKEQLVKKNVESGRNLTEIYKATGVEFNKLVEILSGRSTGVTISDLNSIFNYCDLEIKVLVAMAKSSCKLSFEFVIDENLFSLN
>NC_017464.1|WP_014560094.1|1393478_1394633_+|DUF2130-domain-containing-protein
MKKLFCPVCGKPLTQEEYDKALGLWKEKQEHIKHLEAEQKKFKEQQKQYEIQIREAQKKILEERKKLKLEAQKLLQKQKEELLDSFRKKMETEIKKGIESGVREQKKQFIKQSAELRKTQNKMKRLKESLRLSASKYEKANEEIKRLKEQIEKGITPQIEGLLEEKTLMNKLQELYPDDKFIHTGKGGDIIQIIFDQKKEVGKIVYECKKVKNFDKKFIEQAKNARKQREADFAILITNAFPSKKQYYFVEKNVFVISPVSLEPITYTLRESLIRIALLKLTNEAKEKAVQQIYNYLSGNEYKNRINEISQHLIDLGNELSKEISTHKNLWLKRYNAYKSIYSDVNLIDYKLKEFLQNKIPDKEMKLIQSPKKEFIQISEFENN
>NC_017464.1|WP_014560095.1|1394646_1395507_+|HNH-endonuclease
MLKNAKDFMKFGEFLISAIQSHFPGSESVRNVQIINGWSIFIYLQITPKLNCQFREWGGNPFYFVVEHRNRKLCQLDLTRLIEDDGRFTWYFSNPSNKETKKIFDSLFDFYEEVPKDYRKKVKEQKILLKSNPTVFKSGYLFIKDASVDELKSEFINLIQNLYEFSKDSSNWQGKRRKSEKIFNLDDIEAEEGYKEDKKYLYTQRNREIVEKRKVKDNYTCQICGFYFELDGKKIIECHHLKPLSDGEVRITNINDLISVCPTCHRIIHLRKPPFSPEEVKQILNN
>NC_017464.1|WP_014560096.1|1395522_1396299_+|class-II-glutamine-amidotransferase
MCELLGLNFNREVVSDFSFSGFSKRGKDNPDGWGLAYYNGDKAEVIKEASDASQSILADSVRSNEFIRSKIFIAHVRYATAGTKSFKNTHPFKKELNGKQYIFAHNGTIKNFHKFKLEKFKPEGQTDSEHIFCYLLNRISEKGINNWDENNFIWLHNILSDLNEEGKLNCLFSDGEHLFCYRDKNTSVGLNYVLRKAPFDDNISLNDEDFDMSILLRKFPAEKGYIIATEPLTNEHWQEFEWGSLKVFRSGEMIFESY
>NC_017464.1|WP_014560098.1|1397845_1398298_-|DNA-binding-protein
MYYLGNKEILNNYKIGFLCSRKVPAGIILKTYDWAVEQRDKGNCIVSGFHSKIEKDVFDILVKGSQPIILVLAKGMMKRWDKKIIELVNQNRLLIISLFSEKVTRPTIKTAIKRNELIAEISDKIFIPYFSPNSYLQTLYDNYKLKVLTL
>NC_017464.1|WP_014560099.1|1398396_1399485_-|Fic-family-protein
MTIDPNKPFNELPLLPPKADIETKTVLKKAITANRALAELKGASRLLPNQNIIINTLALEEARDSSAIENIITTRDKLFRALVTDPRKIDPVTKEVLNYRKALWKGFTEVQKKGFISTNIIIDIQKELISNNAGIRKLPGTVLENDITGEIIYTPPLGESIIYSLLKNFENYLNTNTSNDPLVKLAVLHYQFEAIHPFYDGNGRTGRIINVLYLTFNDLIQLPVLYLSGYIIKNKEKYYQLLRKVTYENNWEEWILFMLNAVETTAIETTEKVNKILDLLNKTALEVKEKLPRIYSKELIELIFHQVYCNINFLVENKIGLRKTASKYLNALASIGVLKPEKIGKEVIFLNTRLYKMFKEKK
>NC_017464.1|WP_014560100.1|1399559_1402109_-|ATP-binding-protein
MKAFHTIAIPHKDILKGKLTLEVFAADLHEVSLNQGSDEYRNSKIFFEKTYLTNGLENLLSVVERRIKGNGGDPVIQLQTPFGGGKTHSLIALFHKAKEWKANKVVIVGEKIEATDTLWGLIEKQLTGKITKFKAMHAPGGESLKELLSSHQPLLILMDEVLQYITRAAGVKVEASNLAAQSIAFMQALTEAVSQLPNTVLLLSLPSSVPEHYDENAEMLYNKLQKVSGRVEKIYTPVEDSEITKIIRRRLFSDVDESEAEKIIKAYVEYLEKENLLPPNTQPSEYREQFLSSYPFIPDVIDVLYKRWGTFPQFQRTRGVLRLLAQVVSSLKDSNKPYITLADFDLSNQEIRQELLKHIGSPYNSVIASDITDKNSGATKVNSDIGQTYQGLSLGTRTATTIFMYSHSGGNVKGASVPEIKRSATTLDNISAVIDSVFDKLEKELFFLQKFNDKYFFSNMPNINKILVTYMDNIKESEIEKLEYELLGEKTKSHYLKVYLWEDKSNNINDDDSLKLVIIKKDNPELIKEIIKKKGANPRTKANTVIVLYPSDLDRGNFVYQLKRKIAYENILNAPNLNLSNEQRRDIKKELDKLDSAVFESLRKYYRLVAVPSKDDLKVIDLGVPTWGDIKSLSDEVYEKLINEKEILEKLSPNVLKLTFLKDNEFVFTESIYNSSLSAPGLFRLSSRNVLENAIVQGVREGTFGLGLLEGDKPMCKHYKENVTVYFEPNEIIIKDSVCIEQIEQEKQKITSTITVEETQPRQINPSVGSVPPDEDKQPTKYFEQLSLNLDLPKGKVSNLMGVLNYLQSKYEHLKIDITAFDGKMTKEELEDKIKEALRQSGIHFKFND
>NC_017464.1|WP_014560101.1|1402125_1403178_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MISRECFTKSWLDKVKSTYPIVDPTIIEKSIYALELLSLLKLEGIDFIFKGGTALLLLLSEPKRLSIDVDVSLNILKENLEEKLNSIIKKGTFNNWIEDPRKESKIPKKHYKIFFDSKINPNIKSYILLDVLFQEDPYPKLTEKIIQTDFVILESEISVKLPTINSLLGDKLTALAPNTTGIPFGIGKEMQINKQLFDIGELFEFADDVNEIKKSFERFIKIQSDYKNKNFSYQDVIKDLYEICFLICQINVKGSVKSEVSDLFISGIKAMRSHLMRGTYNLENAKIYSSRTAFLVSFFGKNKDFEQLKKFNISKITNLKLSGSLMILERLRNILPESYYYWQIIQKELE
>NC_017464.1|WP_014560102.1|1403204_1403924_-|hypothetical-protein
MKKTLRNIIIQYSSDKKYFSMNELKEYLKSKNYKYSDAAIKKYLKQLIQEKEIYSAGRSFYSKIPNELKLETESIEPIIEKMDRKFPLLKYSLWSTEQLKMAFHHTQNKFFTFIYSEIDSLIYIRDYLSTSMESVILNPTKNETEKIVFNLRNTIILRANIIHNLSENKIAPIEKILIDLYIESQRLDFIDESEYKKIFEYYIENYRINLSQLLDYAERRKILTKIKYYLRKYTNPTFN

Crispr_ID: NC_017464_3

• CRISPR_ID: NC_017464_3
• CRISPR_location: 1390183-1390438
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 2 spacers
• Cas_protein_info: cas2,cas1,csx1

Consensus repeat of NC_017464_3

Consensus_repeat	Method
GTTTTAATCGAACCACCTGTCCCTAACGAAACGAAGTGAAGTGGGATAGTGGAATTGAGACT	PILER-CR

spacers of NC_017464_3

>3.1|1390245|34|NC_017464|PILER-CR
TTGCTGTTTTGCCTGCTTTATGAGCTTTGTCCTC
>3.2|1390341|36|NC_017464|PILER-CR
CAACAAGAGCTGAGATTGTCCCCCATTAGTATTTGA

CRISPR arrays and Neighbor proteins around NC_017464_3

CRISPR arrays

The CRISPR arrays of NC_017464_3

>merge|NC_017464|3|1390183-1390438|PILER-CR
GTTTTAATCGAACCACCTGTCCCTAACGAAACGAAGTGAAGTGGGATAGTGGAATTGAGACTTTGCTGTTTTGCCTGCTTTATGAGCTTTGTCCTCGTTTTAATCGAACCACTTGTCCCTAACGAAACGAAGTGAAGTGGGATAGTGGAATTGAGACCCAACAAGAGCTGAGATTGTCCCCCATTAGTATTTGAGTTTTAATCGAACCACCTGTCCCTAACGAAACGAAGTGAAGTGGGATAGTGGAATTGAGACT

>NC_017464|3|2|1390183-1390438|PILER-CR
GTTTTAATCGAACCACCTGTCCCTAACGAAACGAAGTGAAGTGGGATAGTGGAATTGAGACT	TTGCTGTTTTGCCTGCTTTATGAGCTTTGTCCTC
GTTTTAATCGAACCACTTGTCCCTAACGAAACGAAGTGAAGTGGGATAGTGGAATTGAGACC	CAACAAGAGCTGAGATTGTCCCCCATTAGTATTTGA
GTTTTAATCGAACCACCTGTCCCTAACGAAACGAAGTGAAGTGGGATAGTGGAATTGAGACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017464.1|WP_014560098.1|1397845_1398298_-|DNA-binding-protein	unknown	unknown	gnl|CDD|223829
NC_017464.1|WP_014560070.1|1374880_1376077_+|hypothetical-protein	unknown	unknown	gnl|CDD|379133
NC_017464.1|WP_041294386.1|1378044_1379115_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_017464.1|WP_083832019.1|1373614_1374202_+|hypothetical-protein	unknown	unknown	gnl|CDD|376616
NC_017464.1|WP_014560096.1|1395522_1396299_+|class-II-glutamine-amidotransferase	unknown	unknown	gnl|CDD|372525
NC_017464.1|WP_014560067.1|1371256_1372306_+|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	gnl|CDD|312526
NC_017464.1|WP_014560068.1|1372302_1373388_+|TIGR02584-family-CRISPR-associated-protein	csx1	pfam09623_csx1_CAS-III	gnl|CDD|187872
NC_017464.1|WP_014560093.1|1393170_1393461_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014560102.1|1403204_1403924_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014560095.1|1394646_1395507_+|HNH-endonuclease	unknown	unknown	gnl|CDD|225724
NC_017464.1|WP_014560072.1|1377019_1377184_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_041294075.1|1379119_1379386_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_017464.1|WP_014560090.1|1387675_1389142_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014560100.1|1399559_1402109_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224400
NC_017464.1|WP_014560071.1|1376078_1377017_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014560101.1|1402125_1403178_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl|CDD|378065
NC_017464.1|WP_014560103.1|1403929_1406692_-|DUF1156-domain-containing-protein	unknown	unknown	gnl|CDD|224657
NC_017464.1|WP_014560099.1|1398396_1399485_-|Fic-family-protein	unknown	unknown	gnl|CDD|225718
NC_017464.1|WP_014560094.1|1393478_1394633_+|DUF2130-domain-containing-protein	unknown	unknown	gnl|CDD|370744
NC_017464.1|WP_014560075.1|1379455_1381207_+|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017464.1|WP_014560068.1|1372302_1373388_+|TIGR02584-family-CRISPR-associated-protein	csx1	pfam09623_csx1_CAS-III	1.5e-41	137.3	0.0
NC_017464.1|WP_041294075.1|1379119_1379386_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5.8e-29	94.9	0.5
NC_017464.1|WP_041294386.1|1378044_1379115_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	3.1e-105	346.6	3.6
NC_017464.1|WP_014560067.1|1371256_1372306_+|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	3.8e-45	148.8	2.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017464.1|WP_014560098.1|1397845_1398298_-|DNA-binding-protein	gnl|CDD|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	0.000106948
NC_017464.1|WP_014560070.1|1374880_1376077_+|hypothetical-protein	gnl|CDD|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	0.00452794
NC_017464.1|WP_041294386.1|1378044_1379115_+|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.48826e-120
NC_017464.1|WP_083832019.1|1373614_1374202_+|hypothetical-protein	gnl|CDD|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	3.58559e-07
NC_017464.1|WP_014560096.1|1395522_1396299_+|class-II-glutamine-amidotransferase	gnl|CDD|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	2.6453e-79
NC_017464.1|WP_014560101.1|1402125_1403178_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl|CDD|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	5.62812e-15
NC_017464.1|WP_014560068.1|1372302_1373388_+|TIGR02584-family-CRISPR-associated-protein	gnl|CDD|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	1.80811e-38
NC_017464.1|WP_014560103.1|1403929_1406692_-|DUF1156-domain-containing-protein	gnl|CDD|224657	COG1743, COG1743, Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair].	5.59144e-141
NC_017464.1|WP_014560095.1|1394646_1395507_+|HNH-endonuclease	gnl|CDD|225724	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms].	9.27216e-15
NC_017464.1|WP_014560094.1|1393478_1394633_+|DUF2130-domain-containing-protein	gnl|CDD|370744	pfam09903, DUF2130, Uncharacterized protein conserved in bacteria (DUF2130). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.51979e-12
NC_017464.1|WP_041294075.1|1379119_1379386_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.87119e-30
NC_017464.1|WP_014560100.1|1399559_1402109_-|ATP-binding-protein	gnl|CDD|224400	COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.72735e-33
NC_017464.1|WP_014560099.1|1398396_1399485_-|Fic-family-protein	gnl|CDD|225718	COG3177, COG3177, Fic family protein [Function unknown].	5.75455e-48
NC_017464.1|WP_014560067.1|1371256_1372306_+|DUF1887-family-protein	gnl|CDD|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	1.70127e-34

Protein sequences

>NC_017464.1|WP_014560090.1|1387675_1389142_+|hypothetical-protein
MKNKLKNIIKYIGIGITSGLTIITPTKAQSTEYNKPTTEIIQEGDNIIIPEHKLTEFIKNNKQEKNNKITKKTLEEFIKDGYITNVLTKEPIQGIETKLVTYTPFPTDTIGPVTTNSQGYYTFTITGINEQKETKNIGTIEYINGTAKITVNNYKKIKITTYDIQGKEITRTTEKEINGTENINLKLPIGETITKIEIDNKTYTNIHINDGKNHYVKKGKNKEQIIEEQYKKLNKTQTLIGLINLQSPNNQYHRYYAVVDYDGVITGNKRFDINLIPRIPLENPIIDPGYTTIPYINTIRDLMWYSSRIEDEWDNRLAGKTLYPIKIYIDSSNAPTGGITSARKIIQYFQDSLDIHPDSLIQETPINIEPNFNNGFSAMKIIWTDSTQTNRLNSLLTFIFSSSHETFIGGKIYIDTNKVTTEENMEKYIARLIQLYITGGVYPINNQNYLAYTTGNRIGPTKRPNNDEKKWIKIERYHKPYYMNRVYP
>NC_017464.1|WP_014560075.1|1379455_1381207_+|hypothetical-protein
MLFIISTSFDNIKNDGSFFWGENYFPQIRNYIPLNTTDVISITEGIIFFNKASQKEKCALKIKINQTHITRVYLKIFYTVTEQLNYKSYQIRNAIKQYFQKNSVLELPFCSAVENEKFYLLLEDGKLFSELSFYEEKNNWEEIYKILESYMPVEKSVLWNKPEALNRFSFATAKLSECTENLKRKFPDNEKRKEFIKQKKYFRELTLKLRVRCIELNPDNPAYYSNLAYTYYQSVNELNTPNGRRDGNLIRDAEKAIEYFDKALILDNNRIPDIYRKAMLLSEILPTHTLYKSDLNDSVNEESQIKEKYLSAVEMIQRGIEEFIKLTKIYENLSEKAVDNSLVPELKNHYKKYYTKALYHIAQKKLKLTKINFNLFNILYGYKPIQCEPDKLNSKVANLNIANSYIEKCIEADYTKKKEEKYLIDLVECDNFIAGVYKAYLKALIETYLFVLTEKTKHLINAKDYFHKALEMNFPLNQKNQNKMFIIEKLAVLNLIERKYEAAIKLLEPIYKKSIQKNSGRFPLYAAFTLSIAYAVIGDKQRATQIIEEHLNCGNKIFEHKFLKLKEHLDNKVQFIKSKEKNE
>NC_017464.1|WP_041294075.1|1379119_1379386_+|CRISPR-associated-endonuclease-Cas2
MFYIAVYDITNQKRLPKVLKTFRKYMNWVQNSAFEGELTAKQFQSLKDELLEIINKEKDSIIFYYAEEQKHIGKKILGVEKNEITQFF
>NC_017464.1|WP_041294386.1|1378044_1379115_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MKNNIYIFSNSILSRKDDSLVLDSIPQTDAIHETDFYETEGIILPAPKTDGSGNPRHIPAESVEAIYTFGEVRFNTQFFKCVGFYEIPVHIFNYYGNYVGSFLPASANGSGEIQILQYKAYIDNYKRITIAKSIIDAAIKNILFNLKSYTYSGIDLDETINTIASIQEQVRFTDSIQELMGFEGTARNTYYSAWQNIFKQETDFEKRIKNPPVGIINSLISFGNSLLYAVCLSEIYRTRLNPFIGFIHETGDNKHPLVYDISEIFKPVIVDKVIFRVINLNIIKPDDFKQTDKGLRLKDDARKKFVEEFENKLSSIIHHKRINRRISLRSLIRMECYNLINYLTGKLKSYDPYRAN
>NC_017464.1|WP_014560072.1|1377019_1377184_+|hypothetical-protein
MNINKFRSILYFAAKILGDVNAVQKGKIGQRIVRRTAGRASAKFLQKIFRYLLR
>NC_017464.1|WP_014560071.1|1376078_1377017_+|hypothetical-protein
MTVKKIIQTLFVLLIPISQIIFNTSCNSDVKSEQNESSAISYNKYFKNFNITILLDLSDRISNRKNPGQYKKDIVFVNNVLDAFKSYLKSKGVVQSEDRIKIIFYPYSNYEIYQQIADSLNINFSEYGFPERKKLFEEISSIYNRQLNNLYAFASNAKSYPGSDLFNYFKHRVTDDCIIADSSFINLLVILTDGYLYDVNSKYQQGNRFSFLIPEANHIQIFRKMNNWEEVFEKNDYGIINLSNDLSDLYVLVGEFNPASNSPKDFDILKKYWSGWLESQNVKKDHYKILKTDLNTLNRNVVFSFFNKIISQ
>NC_017464.1|WP_014560070.1|1374880_1376077_+|hypothetical-protein
MSNILSMQQDASNNLNPEFYENDFETMGFIDAGKVGGSTSAFNISLERFYSRLLLNKDSKQYDIDVKNSEAETRIKLIKEKIETHKNEIDRLQNKELPEAQLILKKANDDLSDFKVNPAKYVKVEKDNLLLWLYGILSLFIAVFLYFFYSSVIYSAVFRDVSISKFTIFDSIFYPKSIEEAYSKGLAALMIVLFSPFIFLALGLAIEHIKTKNSNKYRFTWIGVAIFTFIVDALLAYHISERIYNAKAINSFGNVKPFSIGDAIVDLNFWIIIALGFCVYLLFGYIFSLYTEQRLNKNKFDETERMMKGKVASAFQHIENIKNNIRTLEQEVYSLNISITEIEKEYDKIFYSPNELIKIISDFALGWVKYLQNAKTPESEIQKIEISLNNFYSEKGIK
>NC_017464.1|WP_083832019.1|1373614_1374202_+|hypothetical-protein
MNKFFHIRHLPHLHFEEGIYFITARLYDPNLFKTQNKQIKIKKLNDLPESDFQNHFILYDESLNKQETKINYLKKPEIAQILANEFHQYDGKDYNLIAYTILSNHFHLIFELLKGNTGISSIMKKIKGRSSLFINRKLNRAGKLWQDESYDRWVRDEKELYFIIKYILENPIKAGLASNWYDWKFTYCKPEFLVL
>NC_017464.1|WP_014560068.1|1372302_1373388_+|TIGR02584-family-CRISPR-associated-protein
MKTKNILICVSGLTPQIVTETLFCLSVKEKIPIDEIYVLTTARGREVILGRDKHPATPKTPLKKELENLCKQYKLKKPLFQENDDHIIVAKEESIELPDIRSDKDNILFPNKVCEFLRLKTSDPRNILFCSITGGRKSMSVHLANALSIFAREKDRLVHVLTKEEHEFKGFYPQTKAEIKDLELSDIPFVRLRSLLSAELKGKELLKSNFDEIVRFTQAQLKSLSPSNKMILEMERRELRFGNDRITLEPMEFLFYYFFVDSKLRGLSNISVQQFTSDETRNQFIEYFQVYYENYHIKQKTWYKKGFSKEDFRSKRSKVNLKIKELIEDDDISSNYLIDVNRKYGESTYYIKADKDRFIIK
>NC_017464.1|WP_014560067.1|1371256_1372306_+|DUF1887-family-protein
MNTIFCLVSRQAMANVLPVLMFKPKNVFLLATPEEKSCADNLEKLFKSKKINVQRKDGLDAYDYIGFKNFVKQQLEMQSDDIWLNVTGGTKLMALAAYEAFAEKDKKIIYCDTEHQKIISLFPDYSVTELKAELTIEDYLNSYGYSIEEIRQIESVEDYFDLFSFIEYNNSMSSFIEMFNTIREHLASENKVKQPKFTVTSNDQLFQFQKNYDKYFIQFGKQKKSSIKVELTNFKSGDWLEYYIFYILKKKQNLSPLVGVKLKNQEGVENEIDVMVLKDYRLNIFSCKSGKKDNQFDLYQLETLRSITSGTFGKGIFVTANRHSEKFLNRAKELSIMVIQVNNKLNFDL
>NC_017464.1|WP_014560093.1|1393170_1393461_+|hypothetical-protein
MKTNLLNILSEILKEQLVKKNVESGRNLTEIYKATGVEFNKLVEILSGRSTGVTISDLNSIFNYCDLEIKVLVAMAKSSCKLSFEFVIDENLFSLN
>NC_017464.1|WP_014560094.1|1393478_1394633_+|DUF2130-domain-containing-protein
MKKLFCPVCGKPLTQEEYDKALGLWKEKQEHIKHLEAEQKKFKEQQKQYEIQIREAQKKILEERKKLKLEAQKLLQKQKEELLDSFRKKMETEIKKGIESGVREQKKQFIKQSAELRKTQNKMKRLKESLRLSASKYEKANEEIKRLKEQIEKGITPQIEGLLEEKTLMNKLQELYPDDKFIHTGKGGDIIQIIFDQKKEVGKIVYECKKVKNFDKKFIEQAKNARKQREADFAILITNAFPSKKQYYFVEKNVFVISPVSLEPITYTLRESLIRIALLKLTNEAKEKAVQQIYNYLSGNEYKNRINEISQHLIDLGNELSKEISTHKNLWLKRYNAYKSIYSDVNLIDYKLKEFLQNKIPDKEMKLIQSPKKEFIQISEFENN
>NC_017464.1|WP_014560095.1|1394646_1395507_+|HNH-endonuclease
MLKNAKDFMKFGEFLISAIQSHFPGSESVRNVQIINGWSIFIYLQITPKLNCQFREWGGNPFYFVVEHRNRKLCQLDLTRLIEDDGRFTWYFSNPSNKETKKIFDSLFDFYEEVPKDYRKKVKEQKILLKSNPTVFKSGYLFIKDASVDELKSEFINLIQNLYEFSKDSSNWQGKRRKSEKIFNLDDIEAEEGYKEDKKYLYTQRNREIVEKRKVKDNYTCQICGFYFELDGKKIIECHHLKPLSDGEVRITNINDLISVCPTCHRIIHLRKPPFSPEEVKQILNN
>NC_017464.1|WP_014560096.1|1395522_1396299_+|class-II-glutamine-amidotransferase
MCELLGLNFNREVVSDFSFSGFSKRGKDNPDGWGLAYYNGDKAEVIKEASDASQSILADSVRSNEFIRSKIFIAHVRYATAGTKSFKNTHPFKKELNGKQYIFAHNGTIKNFHKFKLEKFKPEGQTDSEHIFCYLLNRISEKGINNWDENNFIWLHNILSDLNEEGKLNCLFSDGEHLFCYRDKNTSVGLNYVLRKAPFDDNISLNDEDFDMSILLRKFPAEKGYIIATEPLTNEHWQEFEWGSLKVFRSGEMIFESY
>NC_017464.1|WP_014560098.1|1397845_1398298_-|DNA-binding-protein
MYYLGNKEILNNYKIGFLCSRKVPAGIILKTYDWAVEQRDKGNCIVSGFHSKIEKDVFDILVKGSQPIILVLAKGMMKRWDKKIIELVNQNRLLIISLFSEKVTRPTIKTAIKRNELIAEISDKIFIPYFSPNSYLQTLYDNYKLKVLTL
>NC_017464.1|WP_014560099.1|1398396_1399485_-|Fic-family-protein
MTIDPNKPFNELPLLPPKADIETKTVLKKAITANRALAELKGASRLLPNQNIIINTLALEEARDSSAIENIITTRDKLFRALVTDPRKIDPVTKEVLNYRKALWKGFTEVQKKGFISTNIIIDIQKELISNNAGIRKLPGTVLENDITGEIIYTPPLGESIIYSLLKNFENYLNTNTSNDPLVKLAVLHYQFEAIHPFYDGNGRTGRIINVLYLTFNDLIQLPVLYLSGYIIKNKEKYYQLLRKVTYENNWEEWILFMLNAVETTAIETTEKVNKILDLLNKTALEVKEKLPRIYSKELIELIFHQVYCNINFLVENKIGLRKTASKYLNALASIGVLKPEKIGKEVIFLNTRLYKMFKEKK
>NC_017464.1|WP_014560100.1|1399559_1402109_-|ATP-binding-protein
MKAFHTIAIPHKDILKGKLTLEVFAADLHEVSLNQGSDEYRNSKIFFEKTYLTNGLENLLSVVERRIKGNGGDPVIQLQTPFGGGKTHSLIALFHKAKEWKANKVVIVGEKIEATDTLWGLIEKQLTGKITKFKAMHAPGGESLKELLSSHQPLLILMDEVLQYITRAAGVKVEASNLAAQSIAFMQALTEAVSQLPNTVLLLSLPSSVPEHYDENAEMLYNKLQKVSGRVEKIYTPVEDSEITKIIRRRLFSDVDESEAEKIIKAYVEYLEKENLLPPNTQPSEYREQFLSSYPFIPDVIDVLYKRWGTFPQFQRTRGVLRLLAQVVSSLKDSNKPYITLADFDLSNQEIRQELLKHIGSPYNSVIASDITDKNSGATKVNSDIGQTYQGLSLGTRTATTIFMYSHSGGNVKGASVPEIKRSATTLDNISAVIDSVFDKLEKELFFLQKFNDKYFFSNMPNINKILVTYMDNIKESEIEKLEYELLGEKTKSHYLKVYLWEDKSNNINDDDSLKLVIIKKDNPELIKEIIKKKGANPRTKANTVIVLYPSDLDRGNFVYQLKRKIAYENILNAPNLNLSNEQRRDIKKELDKLDSAVFESLRKYYRLVAVPSKDDLKVIDLGVPTWGDIKSLSDEVYEKLINEKEILEKLSPNVLKLTFLKDNEFVFTESIYNSSLSAPGLFRLSSRNVLENAIVQGVREGTFGLGLLEGDKPMCKHYKENVTVYFEPNEIIIKDSVCIEQIEQEKQKITSTITVEETQPRQINPSVGSVPPDEDKQPTKYFEQLSLNLDLPKGKVSNLMGVLNYLQSKYEHLKIDITAFDGKMTKEELEDKIKEALRQSGIHFKFND
>NC_017464.1|WP_014560101.1|1402125_1403178_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MISRECFTKSWLDKVKSTYPIVDPTIIEKSIYALELLSLLKLEGIDFIFKGGTALLLLLSEPKRLSIDVDVSLNILKENLEEKLNSIIKKGTFNNWIEDPRKESKIPKKHYKIFFDSKINPNIKSYILLDVLFQEDPYPKLTEKIIQTDFVILESEISVKLPTINSLLGDKLTALAPNTTGIPFGIGKEMQINKQLFDIGELFEFADDVNEIKKSFERFIKIQSDYKNKNFSYQDVIKDLYEICFLICQINVKGSVKSEVSDLFISGIKAMRSHLMRGTYNLENAKIYSSRTAFLVSFFGKNKDFEQLKKFNISKITNLKLSGSLMILERLRNILPESYYYWQIIQKELE
>NC_017464.1|WP_014560102.1|1403204_1403924_-|hypothetical-protein
MKKTLRNIIIQYSSDKKYFSMNELKEYLKSKNYKYSDAAIKKYLKQLIQEKEIYSAGRSFYSKIPNELKLETESIEPIIEKMDRKFPLLKYSLWSTEQLKMAFHHTQNKFFTFIYSEIDSLIYIRDYLSTSMESVILNPTKNETEKIVFNLRNTIILRANIIHNLSENKIAPIEKILIDLYIESQRLDFIDESEYKKIFEYYIENYRINLSQLLDYAERRKILTKIKYYLRKYTNPTFN
>NC_017464.1|WP_014560103.1|1403929_1406692_-|DUF1156-domain-containing-protein
MNDKRFIEEIFPVKEVSVISAKEKNIRHGHISTLHIWWARRPLASSRATNYAALIPAPKNPKEAEEKKKFIIEFSKWENSLNKDFIERARKEILEANGGVPPKVLDPFGGGGSIPLEALRLGCETYSNDYNPVAVLIQKCTLEYPQKYGNADASKLRGKFNPQKDKDVTLSLDLNEDNKKDKNPLLTDVKYWGNWVLQEAKKEIGKFYPAEKDGSIPVGFIWARTINCQNPACGAEIPLMRQFWLAKKNNKKVSLFPYVKNKKVEFGIVGDGYKPMPGDFDPEDGTIARANAKCLVCGAVVDDKTTRKLFQQGKSGQRMIAVVLHKAGTSGKTYRIATEDDIKIFEEAEKYLDTKRKKLMDEWGIDPVPDENLPGKGTLGISPYFTFPNTWGDLFNSRQKLALIIFTEKVRLAYEKMIEIGYDFNYAKSVITYFTFVIDRLADYNSKLCVWHNSKELIAHTFGRQAIAMVWDFIEVNPFSNSSGNWGESFEYLLRIIENSLKFSGNDLQVNIDYEKVYILQESATNLSYSDNYFDAVFTDPPYYDNVPYSYLSDFFYVWLKRSVGHLYPDLFSTPLTPKTQEIVAYSHGEGGFEAGKKFFEDNLKKSFKEIHRVLKPNGISVIVYAHKSTSGWETLINSLLDSGLVVTAAWPINTEMESRLRAKESAALASSIYLVTRKIEREQTAFYNNVKEEIKNYLITRLDRLWDEGISGADFFISAIGSAIEVFGKYEKVMDYEGNIIRADKLLEDVRIIVTDYAVKKILHNGFATRISDLTRFYVLCRWEFKTAKIPFDEANKLARSCHLELADFFTKKTFIKKEKELINILGPQDREIEDLENSNELIDILHYAVKLWEKGKRKEMQKLLKDTGFAKNDSFYRVAQAIAETLPDTKEKRLLEGFLNLRDKIIEGSFDDQKNLFE

Crispr_ID: NC_017464_4

• CRISPR_ID: NC_017464_4
• CRISPR_location: 2744836-2744983
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_017464_4

Consensus_repeat	Method
TTTTTTGTGGATTTTTGTGCCTTAGTGTTTTTGTGGCAGAATCTCTTT	CRISPRCasFinder

spacers of NC_017464_4

>4.1|2744884|52|NC_017464|CRISPRCasFinder
TTGCCACTAAAGCACTAAAACACAAAACTAATACACTGTGTTCTGTTTTACA

CRISPR arrays and Neighbor proteins around NC_017464_4

CRISPR arrays

The CRISPR arrays of NC_017464_4

>merge|NC_017464|4|2744836-2744983|CRISPRCasFinder
TTTTTTGTGGATTTTTGTGCCTTAGTGTTTTTGTGGCAGAATCTCTTTTTGCCACTAAAGCACTAAAACACAAAACTAATACACTGTGTTCTGTTTTACATTTTTTGTGGATTTTTGTGCCTTAGTGTTTTTGTGGCAGAATCTCTTT

>NC_017464|4|3|2744836-2744983|CRISPRCasFinder
TTTTTTGTGGATTTTTGTGCCTTAGTGTTTTTGTGGCAGAATCTCTTT	TTGCCACTAAAGCACTAAAACACAAAACTAATACACTGTGTTCTGTTTTACA
TTTTTTGTGGATTTTTGTGCCTTAGTGTTTTTGTGGCAGAATCTCTTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017464.1|WP_014561258.1|2742672_2744118_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|215475
NC_017464.1|WP_014561261.1|2745593_2746028_+|copper-chaperone-PCu(A)C	unknown	unknown	gnl|CDD|377298
NC_017464.1|WP_014561266.1|2751699_2752326_+|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	unknown
NC_017464.1|WP_014561253.1|2740836_2741313_-|transcription-elongation-factor-GreA	unknown	unknown	gnl|CDD|234693
NC_017464.1|WP_014561254.1|2741453_2741879_-|OsmC-family-protein	unknown	unknown	gnl|CDD|224679
NC_017464.1|WP_014561265.1|2750097_2751678_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014561247.1|2734410_2735079_-|dolichol-kinase	unknown	unknown	gnl|CDD|223248
NC_017464.1|WP_014561262.1|2746422_2746881_+|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
NC_017464.1|WP_014561248.1|2735065_2737138_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl|CDD|273520
NC_017464.1|WP_014561269.1|2756145_2757717_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014561268.1|2754437_2756009_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014561249.1|2737153_2737705_-|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl|CDD|223707
NC_017464.1|WP_014561266.1|2757738_2758365_+|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	unknown
NC_017464.1|WP_014561260.1|2745029_2745419_+|GxxExxY-protein	unknown	unknown	gnl|CDD|275083
NC_017464.1|WP_014561252.1|2739739_2740828_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl|CDD|273015
NC_017464.1|WP_014561263.1|2746892_2748008_+|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl|CDD|378246
NC_017464.1|WP_014561250.1|2737697_2739062_-|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl|CDD|238950
NC_017464.1|WP_168026843.1|2744233_2744833_+|SCO-family-protein	unknown	unknown	gnl|CDD|239266
NC_017464.1|WP_083832058.1|2742101_2742317_+|hypothetical-protein	unknown	unknown	gnl|CDD|224583
NC_017464.1|WP_014561270.1|2758733_2759381_+|glycine-cleavage-protein-H	unknown	unknown	gnl|CDD|366723

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017464.1|WP_014561258.1|2742672_2744118_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|215475	PLN02880, PLN02880, tyrosine decarboxylase.	9.92467e-138
NC_017464.1|WP_014561261.1|2745593_2746028_+|copper-chaperone-PCu(A)C	gnl|CDD|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	2.88208e-37
NC_017464.1|WP_014561253.1|2740836_2741313_-|transcription-elongation-factor-GreA	gnl|CDD|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	1.14913e-70
NC_017464.1|WP_014561254.1|2741453_2741879_-|OsmC-family-protein	gnl|CDD|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	1.05962e-36
NC_017464.1|WP_014561247.1|2734410_2735079_-|dolichol-kinase	gnl|CDD|223248	COG0170, SEC59, Dolichol kinase [Lipid metabolism].	2.13053e-16
NC_017464.1|WP_014561262.1|2746422_2746881_+|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.16037e-08
NC_017464.1|WP_014561248.1|2735065_2737138_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl|CDD|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_017464.1|WP_014561249.1|2737153_2737705_-|hypoxanthine-phosphoribosyltransferase	gnl|CDD|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	5.273e-68
NC_017464.1|WP_014561260.1|2745029_2745419_+|GxxExxY-protein	gnl|CDD|275083	TIGR04256, conserved_hypothetical_protein, GxxExxY protein. Members of this protein family average about 130 residues in length and include an almost perfectly conserved motif GxxExxY. Members occur in a wide range of prokaryotes, including Proteobacteria, Perrucomicrobia, Cyanobacteria, Bacteriodetes, Archaea, etc.	2.08413e-48
NC_017464.1|WP_014561252.1|2739739_2740828_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl|CDD|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	4.88863e-112
NC_017464.1|WP_014561263.1|2746892_2748008_+|T9SS-type-A-sorting-domain-containing-protein	gnl|CDD|378246	pfam09719, C_GCAxxG_C_C, Putative redox-active protein (C_GCAxxG_C_C). This entry represents a putative redox-active protein of about 140 residues, with four perfectly conserved Cys residues. It includes a CGAXXG motif. Most members are found within one or two loci of transporter or oxidoreductase genes. A member from Geobacter sulfurreducens, located in a molybdenum transporter operon, has a TAT (twin-arginine translocation) signal sequence for Sec-independent transport across the plasma membrane, a hallmark of bound prosthetic groups such as FeS clusters.	1.90785e-10
NC_017464.1|WP_014561250.1|2737697_2739062_-|tRNA-lysidine(34)-synthetase-TilS	gnl|CDD|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	2.00553e-75
NC_017464.1|WP_168026843.1|2744233_2744833_+|SCO-family-protein	gnl|CDD|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	1.33967e-34
NC_017464.1|WP_083832058.1|2742101_2742317_+|hypothetical-protein	gnl|CDD|224583	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only].	2.10163e-17
NC_017464.1|WP_014561270.1|2758733_2759381_+|glycine-cleavage-protein-H	gnl|CDD|366723	pfam01597, GCV_H, Glycine cleavage H-protein. This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.	1.07878e-11

Protein sequences

>NC_017464.1|WP_168026843.1|2744233_2744833_+|SCO-family-protein
MKTKIYSLSAVIFFLIILSGCYEHFPLKQDISRTQNNFLNQDSVEVKFPEMTKGKVTLMAMVYTHCPDICPMTTHNMQLVESKLSKGELDKVRFVVISFDPNRDTPSVLKKFAEIRDIDFNRWSFLSGDDQNTKEVMLKFDIKAVPADSSYDAEGNLSYYIIHTDRISLIDQNGLLRRNYVGSTADINEIVNDIKYLLE
>NC_017464.1|WP_014561258.1|2742672_2744118_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MENNYTDMPVEEFRESGKKLIDWVADYLNEIEKYPPLSQVKPGEILKRIPENPPLKGEEIQKILNDVDKILIDGITHWNHPGFMAYFNSTSSGPGILAELLSAAINANGMLWKTSPAFTELEKAMMNWFRQMVGLPENYWGIIYDTASTSSMHAIASAREQLNLNIREKGMSGRTDLPKLRLYCSEHAHSSIEKGALTLGIGLDGVKKISVNEKYEMNSEELEEAIKSDISNNIKPFCVVATVGTTSTTSIDPVRKISEICNKYNLWLHIDAAYAGVTAMIPEMQRITDAWDEADSIVINPHKWMFTPMDLSIYFTRKPEILKRAFSLVPEYLKTQVDDEVENLMDYGIQLGRRFRSLKLWFIIRYFGVEGLATRIKHHIELAKEFANWIDEEKDFERMAPVPFSTVCFRFNPGNKSDEDLNQMNEKLLEEINSSGKIFLSHTKLNGKFVIRLTIGSIRHERRHIVEAWGLIKSLAEKIVL
>NC_017464.1|WP_083832058.1|2742101_2742317_+|hypothetical-protein
MEIFGSYAKMEDSDKSDLDILVSFSKTPSLLKFIELKNFLSEKLNLQVDLVLKDSLKESIIDYILNQTIKL
>NC_017464.1|WP_014561254.1|2741453_2741879_-|OsmC-family-protein
MATKKAFVKQVKGITFVGKTDSNHWITMDGPEQFGGSDAGIRPKELILISLAGCTGSDVASILSKKRVKLDGFEMNITADVAEEHPQVFTKIHLEHVFYGKNLPVKELERAIELSQTKYCSVTAMLQKAMPIEHSYRIVEE
>NC_017464.1|WP_014561253.1|2740836_2741313_-|transcription-elongation-factor-GreA
MNGQNFVYLTRERLIELEKELQDMKNNGRKEIARKIAEARAHGDLSENAEYDAAKEEQGLFELRIAKLEDILSRARVIDTSKMPNDEVHILSVVKIKNLKTNKIFEYTLVSPEEADFQAGKISITSPVGQGLMGAKIGQKVTIKAPAGNLEFEILEIK
>NC_017464.1|WP_014561252.1|2739739_2740828_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MNDESYIQLTLEIAKRGSGFVSPNPMVGCVITKNNKIIGAGYHQKYGENHAEINAINSAVESLEGSTLYVNLEPCSHYGHTPPCVDKIIESKIKRVVIGTLDVNPLVSGNGVKKLKKAGIEVKVGVLEKECTELNKFFFKYITKKIPYVTLKIAQTLDGKIADESNYSQWITSAESRKLVHSLRAEYDAVLIGKRTAELDNPLLTVRLTEGRNPWRVVLDSDLKLNTDLKLFTQNTDGKTILVTSKESISKKNKIKKLSGLGVRIIFVKRNGNGNLNLKSILKELGILEITSVLVEGGSEIFSSFLKQNLFDDVLLFISPKLLGTGISAFSSVRINDLRKAFRFKIKNSEIVGDDILLELTK
>NC_017464.1|WP_014561250.1|2737697_2739062_-|tRNA-lysidine(34)-synthetase-TilS
MNSTEQKVIRFIQTHSLINYGDKILIALSGGPDSVFLLHFLKKFSPKFGIELAAFHLNHSLRKSADKEQKFCKQLCEELSIPFHSSKADVKSYAKKNKISVEEAGRIIRYNLLNDCAEKNYYTKITTAHNADDNAETVLLNISKGTGIKGIAGIPVFRENIIRPILCLSKSEIISYLKEKKIKYVIDESNLSEKYERNFLRLKIIPQLEEKINPAFVNSVLSTSINLQSFINYFEKNLSELKKKYSEEVNGKLKIKISLFKNEEKFFQSGLVINLLSEKFNLKSEQKDVEKIISLIKKKVGTTETLKKKIKAIRERDYIVVFVERSHNEKPIIIRVGESKKVNFHTVSISKVDASDVKLTPDKNIEYVDADLTGDNFLIRKWKPGDKFNPIGMKGTKKISDYLNDIKTEAIEKKNQLVLTSKNKIVWVIGKRLDNRFKITTETKNIYKFELINV
>NC_017464.1|WP_014561249.1|2737153_2737705_-|hypoxanthine-phosphoribosyltransferase
MSEQNDKLIINGEKFIPFLSSREIQSRVKELGEEISRDYRGKVPIFIGVLNGAFIFMSDLIKNVDIECEIDFFKLSSYGDSKISSGNVKLLKELNCDVNGRDIIIVEDIVDTGLSIKYIEELFSKHTPKSMKVVSLLVKPESLKYDVKIDYIGFRIPSQFVIGYGLDYQQKYRNLTSIYILSE
>NC_017464.1|WP_014561248.1|2735065_2737138_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MDNKFRKFYNGDDDNKFNFRKNNNNSNKPDDNFDWSKIIRMVFGWGAVIVAAVIIMQLFRTGAENYTEISFGEYEKLLNEKGKIVSAKVTKKDINDYYFNAELNSETTVKVGSRNFPTKAISVYIPEPIIKEQEAKWRELGIQYTFEKDSTEWLNIIIGFLPWILIIAIWIVIMRRMQGQGGGTRGIFSFGKSKAKLITPSNKRVTFKDVAGADEAKLELQEIIEFLKEPSKFQKLGGKIPRGVLLLGPPGTGKTLLARAVAGEAGVPFFSISGADFVEMFVGVGASRVRDLFDQGKRHAPCIIFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFEQNSGVIIIAATNRPDVLDPALLRPGRFDRQVVVDRPDVKGREGILKVHTRNIPLGDDVDLEVLAKGTPGLAGAELANLVNEAALLAARKNKKKVEMSDFEEAKDKVMMGMERKSLIISEEEKKTTAYHEIGHVLVAKKLPEADPVHKVTIIPRGRALGVTSYLPIDEKHTYSKEYLEAMITYALGGRAAEKLIFNHYTTGAGNDIEKATNIARKMVCEWGMSERLGPLAYGAKEEEIFLGREIQRHKDYSEKTAQEIDDEVRTIIRNAEQRAENILKENIELLHKLSKELLEREILDGDEIDAIIKGQELPPVKKPEKSNGEEDIPDHVKKLMEQRNKKETAPKDESN
>NC_017464.1|WP_014561247.1|2734410_2735079_-|dolichol-kinase
MNQIDNGTIHYRDELVRKLIHLFSLSIPTIYYFIPKSVAIIILAGLTAFALVVDLARYFHPEVGKIFYKIFGFLLRKHEVDHEKKNLNGATYVLISALLGVIIFPKVIFVTAFSILIISDTSAALIGRKFGKRPFLRKSFEGTLAFFISASIVILFTPKLTNSIAEYMIGLVAAFFGAIVENISYGIADDNLSIPLSVGFVMWALYLIIFPNLDLILPNVPR
>NC_017464.1|WP_014561260.1|2745029_2745419_+|GxxExxY-protein
MFEKIPEDIERIAKLIVESAYAVHKNLGPGLLEKIYEICFCHELNKRGLKYKRQIDIPIVYDNLTFDEGLRLDVLVEDKIICEIKAVDLVNPVWEAQILSHLKLTGKRLGFLINFNVVNIGNGIKRYIR
>NC_017464.1|WP_014561261.1|2745593_2746028_+|copper-chaperone-PCu(A)C
MKLLLLALLIFISSPEEKIKIKEPWMRISAEGQSTALFMKIENMVDVADTLYKVECDFAGRVEIHETYQQGDMMGMREVPFIVIPPKSTFELKPRSHHIMVIKLKKDIKKGMQEEFTLYFKQAGKLKVKATAQEMQMPKMEHKH
>NC_017464.1|WP_014561262.1|2746422_2746881_+|MarR-family-transcriptional-regulator
MEHNKQQFSLGFITLCQLFSETCKSVKVNFNLSENEVRILLIVYTEKPEQIKLISKKLSLSPTLTSKVLSSLEKKNLISRQLNPFNKRYEQVLLTDNGIRVICMITEFIEKILCEKIRNTMMAKPEDILTFSETIKSKITLNNLSLTRISNN
>NC_017464.1|WP_014561263.1|2746892_2748008_+|T9SS-type-A-sorting-domain-containing-protein
MEKLSRKDFLSNASKAAVGLAAVGGLSSIITTASLKAGSKVTPWPWPYTQLDPEAVRIQAHYLYWNDKDCASGTFGALVQALATAIGDPWTNLPIETMLFGRGGGAGWGTLCGCLNGGAAIISLVTTKSQSTPLITELWGWYNSTMLPTDQANQVAVSGQYLVHNYDQALPQNISGSPLCHISVTEWCVHAQKKVSDVERKERCARVTGDIAAKVAELLNAHFAGTFVPTYVDPATLTACMGCHGSAVLNNVMTKMECTQCHGDNPHPNSVERIDPVANSFELYQNYPNPFNPSTKIRYSISKQEKVTVGIYDIQGSLIKVLVDHELQSPGVYETVWDGTDFTGAKVSSGIYFSRLESDSFMKTIKMTLVK
>NC_017464.1|WP_014561265.1|2750097_2751678_+|hypothetical-protein
MKAIKLVVLVSLFFLFCNQAQSQPFIYFDKTISDSAFHRFAKICKLDLSTGVVTDFLPEKYDPYIVNDPTQSFMLVNQRNWSPELYNTNDSINFLLLDHFFGIGIDEMLYSPQHNSLFFLTDGYKYLEIYNLSTHTFSNRINLGKTAYTNFYMEPSRSAFFSSDNDKIYIFVVDSNDIEQVWTFSINDNQIIEKRNLLELGGYQGSLGYSLTFGKKGKGIIESYPPYYNNNNRQYYFRLCDFENIKKYYPFIIKTGECEAYFNGNGEFIIVADETYYNQNDSIDNYQNGNFTIYNSSTGQLVKTITLPPRGVIYTFDNYPNDIYYVLNLDTQPEIYNLTKLELHQLSPAVALTSPFGSRQEFSFNVTAYGGLFTDSSVAYFNGQAKPTSKINDTTVSFTLSNTDIASTGNYPIWISNYGSYSDTLNFSVTYSLQNSLSPTFQCVRRNPDKSYTAYFGYNNNNSYDVFIPTGVNNRFSPSPEFRGQANVFISGNHQNVFTVNFNGDNLTWYLAGQSITVNKNSSSCP
>NC_017464.1|WP_014561266.1|2751699_2752326_+|T9SS-type-A-sorting-domain-containing-protein
MKNIVTVFCLFFLNIIYAQSVYELTPDSKDNQLLLTIENISETDTATNIEIRFLKLPSSIELQNHPAIIASIAPKQQTELPITFNVKRNIKTAQIDTAEIVISSENKILSSKSFIFSYAIPKEFKLEQNYPNPFNPITKIKYQLPITTKVSLKVFDILAREVKTLVDELKEAGYYEIDFNASELSSGIYFSRLESDSFMKTIKMTLVK
>NC_017464.1|WP_014561268.1|2754437_2756009_+|hypothetical-protein
MKKFLLFIFLVFTISDFNIQAQPYIYFPSQKADTVNGIIYPYQILKRYNLKNQTIDVFPPQQFADEYIGNINEPIQSYMFISFKDFGYILYNLNDTSDYFNIYLDGLIEEFLYLQSNNELYIFLDDYSRLVVFDLINKLIKSTLNIGKDAGRNVLSEPYRNSFFSSDDAKIYFYSVDEDNRNKCWVYSLNTHGIINKIELTVLGNSESDSHKMTFGRKGKGIITSGPFYSNPQKDFYYNLYDFDNNISYPTIFNYGFSEAYFNGNGEFILILQTTKDSVDNYFHTGLVKIYNSSTGQLVKTITLPPRGVIYTFDNCPNDIYYVLNLDTQPEIYNLTKLELHQLSPAVALTSPFGSRQEFSFNVTAYGGLFTDSSVAYFNGQAKPTSKINDTTVSFTLSNTDIASTGNYPIWISNYGSYSDTLNFSVTYSLQNSLSPTFQCVRRNPDKSYTAYFGYNNNNSYDVFIPTGVNNRFSPSPEFRGQANVFISGIHQNVFTVNFNGDNLTWYLAGQSITVNKNSSSCP
>NC_017464.1|WP_014561269.1|2756145_2757717_+|hypothetical-protein
MKAIKLLVVVLLFFIFCNQTQSQPFIYFDKTISDSAFHRFAKICKLDLSTGNVTDFIPEKYDPFIISDPDWNYLLVEQRNMPPELYNTSDSSSSYLVEDFFNVSVDEMLYSPTQNTLFFLTDGYRYIERFNIQNHTFFNRLKLGKSVSFNSWMEPTRNAFFSTDKNKIYISVIDSNDVEQVWTYSISTHQIIEKRNLSTLSGHQGALGYNLCFGRNGIGLIEAYPPYTPNRNYYFNIYNFGSNSAQTQIANTGECEAYFNGNGEFTIIAGMTYYNQNDSIDYYSNGTFKIYNSSTGQLVKTNTLPPRGVIYTFDNYPNDIYYVLNLDTQPEIYNLTKLELHQLSPAVALTSPFGSRQEFSFNVTAYGGLFTDSSVAYFNGQAKPTSKINDTTVSFTLSNTDIASTGNYPIWISNYGSYSDTLNFSVTYSLQNSLSPTFQCVRRNPDKSYTAYFGYNNNNSYDVFIPTGVNNRFSPSPEFRGQANVFISGNHQNVFTVNFNGDNLTWYLAGQSITVNKNSSSCP
>NC_017464.1|WP_014561266.1|2757738_2758365_+|T9SS-type-A-sorting-domain-containing-protein
MKNIVTVFCLFFLNIIYAQSVYELTPDSKDNQLLLTIENISETDTATNIEIRFLKLPSSIELQNHPAIIASIAPKQQTELPITFNVKRNIKTAQIDTAEIVISSENKILSSKSFIFSYAIPKEFKLEQNYPNPFNPITKIKYQLPITTKVSLKVFDILAREVKTLVDELKEAGYYEIDFNASELSSGIYFSRLESDSFMKTIKMTLVK
>NC_017464.1|WP_014561270.1|2758733_2759381_+|glycine-cleavage-protein-H
MVALFVVLTFLFFILIDLLVLKAQGKEHPAFAVKVFDKRFFFPTKAILSTGHLWLQKAQNGFYKLGIDEFILKALGKFHLVPLKAEGESVNKGEPILQAVFGNRTITFRAPVDGSIRFLNKNINQKPVDDPYGDDWALMMEPKSDLSLSTAFLKKGNDAIKWLHDEFNRFKDFVAAKAGEPELAGVTLQDGGNIVEGVIRSFDDNTIKEFEEQFL

Crispr_ID: NC_017464_5

• CRISPR_ID: NC_017464_5
• CRISPR_location: 3459265-3459670
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 5 spacers
• Cas_protein_info: cas2,cas1,cas9

Consensus repeat of NC_017464_5

Consensus_repeat	Method
GTTGGTTTAATATCCTCAAAGAA	PILER-CR
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	CRISPRCasFinder

spacers of NC_017464_5

>5.1|3459288|52|NC_017464|PILER-CR
CAAGTTGAAAGCAAATCACAACGCACCACCTTATTTAATGGCACTGTAACAT
>5.2|3459363|52|NC_017464|PILER-CR
CAAGTTGAAAGCAAATCACAACACGATGACGGGACAATAAGCGGCCACATTG
>5.3|3459438|52|NC_017464|PILER-CR
CAAGTTGAAAGCAAATCACAACTAATGGTTCAACAACATTTTACAATAACCC
>5.4|3459513|60|NC_017464|PILER-CR
TCCCGACTTGTCGGGAAAAGCAAATCACAACAAATCGCTTTGTGCGATTCATCTCTGTTA
>5.5|3459596|52|NC_017464|PILER-CR
CAAGTTGAAAGCAAATCACAACTAATGGTTCAACAACATTTTACAATAACCC
>5.6|3459310|30|NC_017464|CRISPRCasFinder
GCACCACCTTATTTAATGGCACTGTAACAT
>5.7|3459385|30|NC_017464|CRISPRCasFinder
ACGATGACGGGACAATAAGCGGCCACATTG

CRISPR arrays and Neighbor proteins around NC_017464_5

CRISPR arrays

The CRISPR arrays of NC_017464_5

>merge|NC_017464|5|3459265-3459670|PILER-CR,CRISPRCasFinder
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACGCACCACCTTATTTAATGGCACTGTAACATGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACACGATGACGGGACAATAAGCGGCCACATTGGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACTAATGGTTCAACAACATTTTACAATAACCCGTTGGTTTAATATCCTCAAAGAATCCCGACTTGTCGGGAAAAGCAAATCACAACAAATCGCTTTGTGCGATTCATCTCTGTTAGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACTAATGGTTCAACAACATTTTACAATAACCCGTTGGTTTAATATCCTCAAAGAA

>NC_017464|5|3|3459265-3459670|PILER-CR
GTTGGTTTAATATCCTCAAAGAA	CAAGTTGAAAGCAAATCACAACGCACCACCTTATTTAATGGCACTGTAACAT
GTTGGTTTAATATCCTCAAAGAA	CAAGTTGAAAGCAAATCACAACACGATGACGGGACAATAAGCGGCCACATTG
GTTGGTTTAATATCCTCAAAGAA	CAAGTTGAAAGCAAATCACAACTAATGGTTCAACAACATTTTACAATAACCC
GTTGGTTTAATATCCTCAAAGAA	TCCCGACTTGTCGGGAAAAGCAAATCACAACAAATCGCTTTGTGCGATTCATCTCTGTTA
GTTGGTTTAATATCCTCAAAGAA	CAAGTTGAAAGCAAATCACAACTAATGGTTCAACAACATTTTACAATAACCC
GTTGGTTTAATATCCTCAAAGAA

>NC_017464|5|4|3459265-3459460|CRISPRCasFinder
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	GCACCACCTTATTTAATGGCACTGTAACAT
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	ACGATGACGGGACAATAAGCGGCCACATTG
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017464.1|WP_148267670.1|3464121_3464310_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_050951087.1|3451501_3451717_-|hypothetical-protein	unknown	unknown	gnl|CDD|225553
NC_017464.1|WP_014561869.1|3451121_3451505_-|DUF302-domain-containing-protein	unknown	unknown	gnl|CDD|269820
NC_017464.1|WP_014561866.1|3449321_3449588_+|DUF493-domain-containing-protein	unknown	unknown	gnl|CDD|377327
NC_017464.1|WP_014561871.1|3451713_3452103_-|rhodanese-like-domain-containing-protein	unknown	unknown	gnl|CDD|238089
NC_017464.1|WP_014561879.1|3462776_3463193_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014561867.1|3449591_3450401_-|META-domain-containing-protein	unknown	unknown	gnl|CDD|377111
NC_017464.1|WP_014561878.1|3460891_3462493_-|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl|CDD|271234
NC_017464.1|WP_014561874.1|3457860_3458814_+|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|274694
NC_017464.1|WP_041294204.1|3458807_3459143_+|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NC_017464.1|WP_014561885.1|3465210_3465720_+|phage-virion-morphogenesis-protein	unknown	unknown	gnl|CDD|227338
NC_017464.1|WP_014561873.1|3452665_3457732_+|hypothetical-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|375967
NC_017464.1|WP_014561883.1|3464469_3464919_+|regulatory-protein-GemA	unknown	unknown	gnl|CDD|377635
NC_017464.1|WP_014561886.1|3465835_3467083_-|minor-capsid-protein	unknown	unknown	gnl|CDD|225244
NC_017464.1|WP_148267671.1|3464915_3465218_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014561880.1|3463531_3463837_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014561868.1|3450619_3450982_-|thioredoxin	unknown	unknown	gnl|CDD|200072
NC_017464.1|WP_148267751.1|3467680_3468892_-|MFS-transporter	unknown	unknown	gnl|CDD|340904
NC_017464.1|WP_014561865.1|3448484_3449183_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014561881.1|3463778_3464042_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017464.1|WP_014561873.1|3452665_3457732_+|hypothetical-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	1.7e-49	163.7	58.2
NC_017464.1|WP_014561874.1|3457860_3458814_+|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	5.7e-88	289.3	0.0
NC_017464.1|WP_041294204.1|3458807_3459143_+|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	4.3e-36	118.4	0.3

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017464.1|WP_050951087.1|3451501_3451717_-|hypothetical-protein	gnl|CDD|225553	COG3008, PqiB, Paraquat-inducible protein B [General function prediction only].	0.00329601
NC_017464.1|WP_014561869.1|3451121_3451505_-|DUF302-domain-containing-protein	gnl|CDD|269820	cd14797, DUF302, Uncharacterized domain family DUF302. These domains are mostly found in bacterial single-domain proteins and have been shown to form homodimers; they may also bind zinc. Also characterized as COG3439.	8.31488e-44
NC_017464.1|WP_014561866.1|3449321_3449588_+|DUF493-domain-containing-protein	gnl|CDD|377327	pfam04359, DUF493, Protein of unknown function (DUF493). This domain is likely to act in a regulatory capacity like pfam01842 domains. This domain has a remarkable property in that the C-terminal residue of every protein in the family lies up in the alignment. This suggests that the C-terminal residue plays some important functional role (Bateman A pers obs).	1.63155e-19
NC_017464.1|WP_014561871.1|3451713_3452103_-|rhodanese-like-domain-containing-protein	gnl|CDD|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	3.80733e-28
NC_017464.1|WP_014561886.1|3465835_3467083_-|minor-capsid-protein	gnl|CDD|225244	COG2369, COG2369, Uncharacterized protein, homolog of phage Mu protein gp30 [Function unknown].	1.98368e-45
NC_017464.1|WP_014561867.1|3449591_3450401_-|META-domain-containing-protein	gnl|CDD|377111	pfam03724, META, META domain. Small domain family found in proteins of of unknown function. Some are secreted and implicated in motility in bacteria. Also occurs in Leishmania spp. as an essential gene. Over-expression in L.amazonensis increases virulence. A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond.	1.51713e-21
NC_017464.1|WP_014561878.1|3460891_3462493_-|T9SS-type-A-sorting-domain-containing-protein	gnl|CDD|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	1.1134e-10
NC_017464.1|WP_014561874.1|3457860_3458814_+|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.89836e-107
NC_017464.1|WP_041294204.1|3458807_3459143_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.25459e-31
NC_017464.1|WP_014561873.1|3452665_3457732_+|hypothetical-protein	gnl|CDD|375967	pfam18541, RuvC_III, RuvC endonuclease subdomain 3. Cas9 proteins are abundant across the bacterial kingdom, but vary widely in both sequence and size. All known Cas9 enzymes contain an HNH domain that cleaves the DNA strand complementary to the guide RNA sequence (target strand), and a RuvC nuclease domain required for cleaving the noncomplementary strand (non-target strand), yielding double-strand DNA breaks (DSBs). The crystal structures of type II-A and II-C Cas9 proteins highlight the features in Cas9 enzymes that support their function as RNA-guided endonucleases. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. The RuvC domain forms the structural core of the nuclease lobe, a six-stranded beta sheet surrounded by four alpha helices, with all three conserved subdomains (I, II, III) contributing catalytic residues to the active site.	3.46657e-32
NC_017464.1|WP_014561883.1|3464469_3464919_+|regulatory-protein-GemA	gnl|CDD|377635	pfam06252, DUF1018, Protein of unknown function (DUF1018). This family consists of several bacterial and phage proteins of unknown function.	7.3617e-17
NC_017464.1|WP_014561868.1|3450619_3450982_-|thioredoxin	gnl|CDD|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	8.6641e-43
NC_017464.1|WP_148267751.1|3467680_3468892_-|MFS-transporter	gnl|CDD|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.37085e-36
NC_017464.1|WP_014561885.1|3465210_3465720_+|phage-virion-morphogenesis-protein	gnl|CDD|227338	COG5005, COG5005, Mu-like prophage protein gpG [General function prediction only].	6.56132e-21

Protein sequences

>NC_017464.1|WP_041294204.1|3458807_3459143_+|CRISPR-associated-endonuclease-Cas2
MMRLNQYRIMWILVLFDLPTDTPKDRKAYAKFRKELIKDGFNMFQFSIYARHCASKENMQAHVKRVREILPSKGHVGILKITDKQFGMMEIFYGKKKEDSGFIESHQLELF
>NC_017464.1|WP_014561874.1|3457860_3458814_+|type-II-CRISPR-associated-endonuclease-Cas1
MIKRTLYFGNPAYLSLKNMQMLIKLPISGNDNEATDEDKNEKYKDRNNQNTFPIEDIGIVILDNQQITITQGLLSSLLDNNSAIVTCDSRHHPAGLFLPLESNLEQSQRFQEQIEASVPLKKQLWQQTISSKIINQALLLNKIGVKSDNMKKWARDVKSGDPDNLEGRAAAYYWKNLFPEELQFQRDRYGKPPNNLLNYGYAILRAVVARSLVASGLLPTLGIHHHNKYNAFCLADDIMEPYRPFVDDIIVTLVRDGEDFTELTPSIKKQLLTIPVIDVFIEEQKRPLMIAVQRTTSSLAKCFSGNQRKIIYPVFRL
>NC_017464.1|WP_014561873.1|3452665_3457732_+|hypothetical-protein
MEFKKVLGLDIGTNSIGCALLSLPKSIQDYGKGGRLEWLTSRVIPLDADYMKAFIDGKNGLPQVITPAGKRRQKRGSRRLKHRYKLRRSRLIRVFKTLNWLPEDFPLDNPKRIKETISTEGKFSFRISDYVPISDESYREFYREFGYPENEIEQVIEEINFRRKTKGKNKNPMIKLLPEDWVVYYLRKKALIKPTTKEELIRIIYLFNQRRGFKSSRKDLTETAILDYDEFAKRLAEKEKYSAENYETKFVSITKVKEVVELKTDGRKGKKRFKVILEDSRIEPYEIERKEKPDWEGKEYTFLVTQKLEKGKFKQNKPDLPKEEDWALCTTALDNRMGSKHPGEFFFDELLKAFKEKRGYKIRQYPVNRWRYKKELEFIWTKQCQLNPELNNLNINKEILRKLATVLYPSQSKFFGPKIKEFENSDVLHIISEDIIYYQRDLKSQKSLISECRYEKRKGIDGEIYGLKCIPKSSPLYQEFRIWQDIHNIKVIRKESEVNGKKKINIDETQLYINENIKEKLFELFNSKDSLSEKDILELISLNIINSGIKISKKEEETTHRINLFANRKELKGNETKSRYRKVFKKLGFDGEYILNHPSKLNRLWHSDYSNDYADKEKTEKSILSSLGWKNRNGKWEKSKNYDVFNLPLEVAKAIANLPPLKKEYGSYSALAIRKMLVVMRDGKYWQHPDQIAKDQENTSLMLFDKNLIQLTNNQRKVLNKYLLTLAEVQKRSTLIKQKLNEIEHNPYKLELVSDQDLEKQVLKSFLEKKNESDYLKGLKTYQAGYLIYGKHSEKDVPIVNSPDELGEYIRKKLPNNSLRNPIVEQVIRETIFIVRDVWKSFGIIDEIHIELGRELKNNSEERKKTSESQEKNFQEKERARKLLKELLNSSNFEHYDENGNKIFSSFTVNPNPDSPLDIEKFRIWKNQSGLTDEELNKKLKDEKIPTEIEVKKYILWLTQKCRSPYTGKIIPLSKLFDSNVYEIEHIIPRSKMKNDSTNNLVICELGVNKAKGDRLAANFISESNGKCKFGEVEYTLLKYGDYLQYCKDTFKYQKAKYKNLLATEPPEDFIERQINDTRYIGRKLAELLTPVVKDSKNIIFTIGSITSELKITWGLNGVWKDILRPRFKRLESIINKKLIFQDEDDPNKYHFDLSINPQLDKEGLKRLDHRHHALDATIIAATTREHVRYLNSLNAADNDEEKREYFLSLCNHKIRDFKLPWENFTSEVKSKLLSCVVSYKESKPILSDPFNKYLKWEYKNGKWQKVFAIQIKNDRWKAVRRSMFKEPIGTVWIKKIKEVSLKEAIKIQAIWEEVKNDPVRKKKEKYIYDDYAQKVIAKIVQELGLSSSMRKQDDEKLNKFINEAKVSAGVNKNLNTTNKTIYNLEGRFYEKIKVAEYVLYKAKRMPLNKKEYIEKLSLQKMFNDLPNFILEKSILDNYPEILKELESDNKYIIEPHKKNNPVNRLLLEHILEYHNNPKEAFSTEGLEKLNKKAINKIGKPIKYITRLDGDINEEEIFRGAVFETDKGSNVYFVMYENNQTKDREFLKPNPSISVLKAIEHKNKIDFFAPNRLGFSRIILSPGDLVYVPTNDQYVLIKDNSSNETIINWDDNEFISNRIYQVKKFTGNSCYFLKNDIASLILSYSASNGVGEFGSQNISEYSVDDPPIRIKDVCIKIRVDRLGNVRPL
>NC_017464.1|WP_014561871.1|3451713_3452103_-|rhodanese-like-domain-containing-protein
MDASQIFFYGLLLILILYIARKVYLYRSVKNYSPAELTEKLKKDKNVILLDVRTPQERKQDYIKGSFHIPLYDLGADKKELLKFKDKEIICYCRTGNRSLIAASKLRKLGFNSANLKGGIIFWNKADLK
>NC_017464.1|WP_050951087.1|3451501_3451717_-|hypothetical-protein
MIKRWAKFILPTVAGLIGGYLYYYYVGCNRGCAITGNPYTSMLWGGAIGLLLTNWKSKPKQNEEKSNEVKK
>NC_017464.1|WP_014561869.1|3451121_3451505_-|DUF302-domain-containing-protein
MKYGFSKITDYSFEEAIQKVTDELKKEGFGVLTTIDVKETLKNKLNVDFKKYTILGACNPSLAHQALQAEEELGLLLPCNVIVYEKEGKSVVSVFDPMILAYIIDNPNMKAVAEEVKIKLERVLEAV
>NC_017464.1|WP_014561868.1|3450619_3450982_-|thioredoxin
MTEHLTKETFLEKVFDYEKNQEWKYQGKLPALIDFWAPWCGPCRIVGPILEELSEEYAGKIKIYKVNTDEEQELGAVFGIRSIPSLLFIPVDGQPKMAVGALPKETLKQAIEKELLTQAA
>NC_017464.1|WP_014561867.1|3449591_3450401_-|META-domain-containing-protein
MKIILSVLITLITFSGCSSHQKMSDNNSNLPDSGKTEIVAPSFYREKFLRGIDFYARGNEPNWVLEIDFDSSMNFSEMNGFNFRTPAVKGIKAQDADVTNFRAQTESGELSVTISKEKCQDNMSGEMFDYKVRIQIKKSNEANFTDFSGCGKYLYDYRLNDIWIMEEMTNVVLKKENLMKGLPMFEFNLADMRFSGHAGCNQMSGAIKVKGNKIIFGNLISTKMACPDMTVEQKVIEALNDKSFTYKIEKLKLVLESESGIRMIFRKTD
>NC_017464.1|WP_014561866.1|3449321_3449588_+|DUF493-domain-containing-protein
MILDENSKRPEIEYPCNWDYKIIGTDVSEMVKVIEEAVGDLTYEITPSNISKKGNYFSLNLTVFVPSEIVRDIIFQKVSASSFVKIVF
>NC_017464.1|WP_014561865.1|3448484_3449183_-|hypothetical-protein
MKKQTLLYTVLLFALILLQNNSVLQTDNSEITTIKNIISKVDYFPLDNNKELFYDSNFGELKLSIEKKGEIYTTEMISDDFVYRQKLLLKEDGVYIKETYQKIKILLFVNKESKYFYNEPLPRFKYPIIPGQFWEWRGKEFNNDEINTLEIKSASIGFETIKVKAGEFNTMKVITEIESGSGTKNKVTEWLSKDIGIIKSEVEIQGGGLMSFVRDVLGYGTLTFELSEIKNK
>NC_017464.1|WP_014561878.1|3460891_3462493_-|T9SS-type-A-sorting-domain-containing-protein
MKLFPYKLILFMVISFYFPTTFCQHGVGTNWQNEILLPRYNESLNPKQRGVLYNNMVVTSGGRIIISTSELNASNINQIYGHYLTFSDDGGNSWSTPVRFTPTDMVIGASSPKLAIDKNNNVYAIWSSVNPKALFISQLDSNLNILHDSIRVSSNMSYGNFVPHLTIDRKNRIHVMWNEGSTNSSNTAESFYSRSTDGGINWSSAIPISSNDGHHSAFPHAQFDNAGDTLAISWRDSVGGLNRWDVYLVFSTDGGQSWTPPIPTITSSDSDWDPDLIIDTNNRIHLFYTKYPATNPFWGARNYYTYSDNLGASWQLPNNPANGMFSDNYRSQLIEGTRYDEKNNILYVTWKDERDFNFSNGNVQGDIMMTYSTDRGINWITPEFITDRNDSTVGFKTATVLPTGEFAVNYEVISEDDINNPATSVRVYFRKRELSITSVSDDNLSVKDYYLLQNYPNPFNPITLISYKLPISSNVKLSIYNLLGEEVSVLVNEHQNAGNYKVTFDGSELSSAIYFYRLQASKFSDVKSMILLK
>NC_017464.1|WP_014561879.1|3462776_3463193_-|hypothetical-protein
MPTNEIILKLRIDGKDANAVLNLTDDNIKELYKSFKYGQQEVNGLITSISQGFNKAREIIQGFKESFDVISTAFRTHLNEYQKQQAALIKLNTALQQTRQYTESNVNALTNYAAKLQQTTIYGDEVTETVMAQLLAMG
>NC_017464.1|WP_014561880.1|3463531_3463837_-|hypothetical-protein
MQTTTNTYTINQQTYHLKNKYTLKDWGSILKILGGINPDDNNSIALLLTDNRVEDLLAIILDKPVEGDIYENDFNEVSRAINDFFTRKKSLMKNTSGSSIN
>NC_017464.1|WP_014561881.1|3463778_3464042_-|hypothetical-protein
MELKIKIGKGNYALRAFDKNGNQGYYTSSRLNGFNYVNNELVCNVPDESKTYQLKELITLKIVSQGEINANDDKHIHNKSADLSSKK
>NC_017464.1|WP_148267670.1|3464121_3464310_-|hypothetical-protein
MFNTNVLSQTDEMVINDEERTLKIVLEGRVPIYAVSFLYGTGNGGSAADTRGTTGGTIKFGY
>NC_017464.1|WP_014561883.1|3464469_3464919_+|regulatory-protein-GemA
MSQINITQISKIHVLKNQLHLSDEEYGAALEGYGVTTSKDLSYEQAADLIKKLVKLLPKELRENQDQRRKATKQKYDGLGIRWNDKLREHFATPKQLRMLEAIWMTSPRVEHKNEDAFKKFVKRISGKEKLEWVMMNDVRKIKKAIESL
>NC_017464.1|WP_148267671.1|3464915_3465218_+|hypothetical-protein
MKMDWIKDIDFNKFLDGDLKLLIEIVGVEKFIELYRHFAKTAIYFSEKPLMEMKQEYIRKNFRNKSEKELARMLGVSERLVYKIGSMKVRMNDQGDLFDE
>NC_017464.1|WP_014561885.1|3465210_3465720_+|phage-virion-morphogenesis-protein
MNNEFKSPEILELLKKKLSNKNQLMVDIAETMRTAVLKNFETEGSRIGKPWQKLSKDTIKQRQKKGYWPGKILQRTGQLKRSIISSYGEDYAQVSTNLIYAAIQNYGGIIHRSLLKTYLRKKTESKSAQKPKQNKMSSIRIPARPFMLLNEQDLEKIKKKIINSLTGDE
>NC_017464.1|WP_014561886.1|3465835_3467083_-|minor-capsid-protein
MPKDIDIKLAIGLKPEQIINYLKRKGYKISWNWEDTWKEAHTKAFTVAKAMKLDILSDIRNELQKALDNGLTYQQFKENLKPTLKAKGWWGKVKAKDVPSEFPLPPDVDPEKEIQLGSPWRLKTIYRTNIDVAYASGHYKAMMDSIKNRPYWMYNAVLDSRTRPSHRALHGKVFRADDPIWDKIYPPNDWGCRCSVIPLDDNDLEEMNLKPIKGSNELINKLKPGKGWDYNPGKTSLEFDQTFGGNLKLNDNQPTYKDFGRPSVKDVKERIPSPDKFPSIKEIGEEKFIELLKKEFNLEKSDYSVLNTADDDKNIFTLDRLKHGYEKQDGRERYFSYVKSTLQDPFEVWLSEYINEKGEIELRKSYIGLFKDKELNEDIFIVLRQEKDSFVFWNAFERDRNRIDKLRKGYLKYWK
>NC_017464.1|WP_148267751.1|3467680_3468892_-|MFS-transporter
MELFERLAYYGQATILSVFLRDHLKFDEVQAGQLSSIFGGLIYFLPIFAGALADKFGFKKAFSFAFFVLAIGYFLIGSTGIAAFSSWYENKDLFPLLSAILIFTAIGGSFIKPSVLGTVALTTTAETKSLGYAIYYWLVNMGAAIGPFLAYLVRDSFGIEFVYLVSSISCALMFLVTIFIFKEPEAKLNEERESLIQVVKNLWTVVKNIKFIIFLLIFALYWIVFWEFFIVIPFYISDYISPDAPIELVLSTGAWTIILLQIPINRLTKNIPTPTAIMIGFVFAALSWFLLYFVTLAGTVVGLGFIIATIFIFSVGEQTQAPRFYEYLADLAPKGQAALFQGFAFLPIAIAWLLGGTFGGWIYQKFGTKEVGQPEIVFLIIGLVGIAAAAMMFVYNLVVHRKS

Crispr_ID: NC_017464_6

• CRISPR_ID: NC_017464_6
• CRISPR_location: 3459732-3460385
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 8 spacers
• Cas_protein_info: cas2,cas1,cas9

Consensus repeat of NC_017464_6

Consensus_repeat	Method
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	CRT
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	CRISPRCasFinder
AGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACT	PILER-CR

spacers of NC_017464_6

>6.1|3459777|30|NC_017464|CRT
CAATCTGGGGGGTGAGACAGGTTTTTCATT
>6.2|3459852|39|NC_017464|CRT
AATCACAACAGTGTTCTCATGTAAGCTCTCGTGAATCTG
>6.3|3459936|30|NC_017464|CRT,CRISPRCasFinder
AGAACTAATATAATTCCCCCATCATTGCTA
>6.4|3460011|30|NC_017464|CRT,CRISPRCasFinder
TTACAAAATCAGCATAATAATAACAAATCA
>6.5|3460086|30|NC_017464|CRT,CRISPRCasFinder
CCCATAGCCTCTCGGGTGTTCTGCCAAAGT
>6.6|3460161|30|NC_017464|CRT,CRISPRCasFinder
TATATGCAATTATGCTTCTTATTGTGCTTG
>6.7|3460236|30|NC_017464|CRT,CRISPRCasFinder
CAGGGGTTATTGTAGGATTATTAACACTTG
>6.8|3460311|30|NC_017464|CRT
TAATGGTTCAACAACATTTTACAATAACCC
>6.9|3460012|28|NC_017464|PILER-CR
TACAAAATCAGCATAATAATAACAAATC
>6.10|3460087|28|NC_017464|PILER-CR
CCATAGCCTCTCGGGTGTTCTGCCAAAG

CRISPR arrays and Neighbor proteins around NC_017464_6

CRISPR arrays

The CRISPR arrays of NC_017464_6

>merge|NC_017464|6|3459732-3460385|CRT,CRISPRCasFinder,PILER-CR
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACCAATCTGGGGGGTGAGACAGGTTTTTCATTGTTGGTTTAATATCCTCAAAGAATCCCGACTTGTCGGGAAAAGCAAATCACAACAGTGTTCTCATGTAAGCTCTCGTGAATCTGGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACAGAACTAATATAATTCCCCCATCATTGCTAGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACTTACAAAATCAGCATAATAATAACAAATCAGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACCCCATAGCCTCTCGGGTGTTCTGCCAAAGTGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACTATATGCAATTATGCTTCTTATTGTGCTTGGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACCAGGGGTTATTGTAGGATTATTAACACTTGGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACTAATGGTTCAACAACATTTTACAATAACCCGTTGGTTTAATATCCTCAAAGAATCCCGACTTGTCGGGAAAAGCA

>NC_017464|6|2|3459732-3460385|CRT
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	CAATCTGGGGGGTGAGACAGGTTTTTCATT
GTTGGTTTAATATCCTCAAAGAATCCCGACTTGTCGGGAAAAGCA	AATCACAACAGTGTTCTCATGTAAGCTCTCGTGAATCTG
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	AGAACTAATATAATTCCCCCATCATTGCTA
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	TTACAAAATCAGCATAATAATAACAAATCA
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	CCCATAGCCTCTCGGGTGTTCTGCCAAAGT
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	TATATGCAATTATGCTTCTTATTGTGCTTG
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	CAGGGGTTATTGTAGGATTATTAACACTTG
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	TAATGGTTCAACAACATTTTACAATAACCC
GTTGGTTTAATATCCTCAAAGAATCCCGACTTGTCGGGAAAAGCA

>NC_017464|6|5|3459891-3460310|CRISPRCasFinder
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	AGAACTAATATAATTCCCCCATCATTGCTA
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	TTACAAAATCAGCATAATAATAACAAATCA
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	CCCATAGCCTCTCGGGTGTTCTGCCAAAGT
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	TATATGCAATTATGCTTCTTATTGTGCTTG
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC	CAGGGGTTATTGTAGGATTATTAACACTTG
GTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAAC

>NC_017464|6|4|3459965-3460161|PILER-CR
AGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACT	TACAAAATCAGCATAATAATAACAAATC
AGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACC	CCATAGCCTCTCGGGTGTTCTGCCAAAG
TGTTGGTTTAATATCCTCAAAGAACAAGTTGAAAGCAAATCACAACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_017464.1|WP_148267670.1|3464121_3464310_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_050951087.1|3451501_3451717_-|hypothetical-protein	unknown	unknown	gnl|CDD|225553
NC_017464.1|WP_014561883.1|3464469_3464919_+|regulatory-protein-GemA	unknown	unknown	gnl|CDD|377635
NC_017464.1|WP_014561869.1|3451121_3451505_-|DUF302-domain-containing-protein	unknown	unknown	gnl|CDD|269820
NC_017464.1|WP_014561866.1|3449321_3449588_+|DUF493-domain-containing-protein	unknown	unknown	gnl|CDD|377327
NC_017464.1|WP_014561871.1|3451713_3452103_-|rhodanese-like-domain-containing-protein	unknown	unknown	gnl|CDD|238089
NC_017464.1|WP_014561879.1|3462776_3463193_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014561867.1|3449591_3450401_-|META-domain-containing-protein	unknown	unknown	gnl|CDD|377111
NC_017464.1|WP_014561878.1|3460891_3462493_-|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl|CDD|271234
NC_017464.1|WP_014561874.1|3457860_3458814_+|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|274694
NC_017464.1|WP_041294204.1|3458807_3459143_+|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NC_017464.1|WP_014561886.1|3465835_3467083_-|minor-capsid-protein	unknown	unknown	gnl|CDD|225244
NC_017464.1|WP_014561873.1|3452665_3457732_+|hypothetical-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|375967
NC_017464.1|WP_014561880.1|3463531_3463837_-|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_148267671.1|3464915_3465218_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014561876.1|3459260_3459620_+|hypothetical-protein	unknown	unknown	unknown
NC_017464.1|WP_014561868.1|3450619_3450982_-|thioredoxin	unknown	unknown	gnl|CDD|200072
NC_017464.1|WP_148267751.1|3467680_3468892_-|MFS-transporter	unknown	unknown	gnl|CDD|340904
NC_017464.1|WP_014561885.1|3465210_3465720_+|phage-virion-morphogenesis-protein	unknown	unknown	gnl|CDD|227338
NC_017464.1|WP_014561881.1|3463778_3464042_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_017464.1|WP_014561873.1|3452665_3457732_+|hypothetical-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	1.7e-49	163.7	58.2
NC_017464.1|WP_014561874.1|3457860_3458814_+|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	5.7e-88	289.3	0.0
NC_017464.1|WP_041294204.1|3458807_3459143_+|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	4.3e-36	118.4	0.3

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_017464.1|WP_050951087.1|3451501_3451717_-|hypothetical-protein	gnl|CDD|225553	COG3008, PqiB, Paraquat-inducible protein B [General function prediction only].	0.00329601
NC_017464.1|WP_014561869.1|3451121_3451505_-|DUF302-domain-containing-protein	gnl|CDD|269820	cd14797, DUF302, Uncharacterized domain family DUF302. These domains are mostly found in bacterial single-domain proteins and have been shown to form homodimers; they may also bind zinc. Also characterized as COG3439.	8.31488e-44
NC_017464.1|WP_014561866.1|3449321_3449588_+|DUF493-domain-containing-protein	gnl|CDD|377327	pfam04359, DUF493, Protein of unknown function (DUF493). This domain is likely to act in a regulatory capacity like pfam01842 domains. This domain has a remarkable property in that the C-terminal residue of every protein in the family lies up in the alignment. This suggests that the C-terminal residue plays some important functional role (Bateman A pers obs).	1.63155e-19
NC_017464.1|WP_014561871.1|3451713_3452103_-|rhodanese-like-domain-containing-protein	gnl|CDD|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	3.80733e-28
NC_017464.1|WP_014561886.1|3465835_3467083_-|minor-capsid-protein	gnl|CDD|225244	COG2369, COG2369, Uncharacterized protein, homolog of phage Mu protein gp30 [Function unknown].	1.98368e-45
NC_017464.1|WP_014561867.1|3449591_3450401_-|META-domain-containing-protein	gnl|CDD|377111	pfam03724, META, META domain. Small domain family found in proteins of of unknown function. Some are secreted and implicated in motility in bacteria. Also occurs in Leishmania spp. as an essential gene. Over-expression in L.amazonensis increases virulence. A pair of cysteine residues show correlated conservation, suggesting that they form a disulphide bond.	1.51713e-21
NC_017464.1|WP_014561878.1|3460891_3462493_-|T9SS-type-A-sorting-domain-containing-protein	gnl|CDD|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	1.1134e-10
NC_017464.1|WP_014561874.1|3457860_3458814_+|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.89836e-107
NC_017464.1|WP_041294204.1|3458807_3459143_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.25459e-31
NC_017464.1|WP_014561873.1|3452665_3457732_+|hypothetical-protein	gnl|CDD|375967	pfam18541, RuvC_III, RuvC endonuclease subdomain 3. Cas9 proteins are abundant across the bacterial kingdom, but vary widely in both sequence and size. All known Cas9 enzymes contain an HNH domain that cleaves the DNA strand complementary to the guide RNA sequence (target strand), and a RuvC nuclease domain required for cleaving the noncomplementary strand (non-target strand), yielding double-strand DNA breaks (DSBs). The crystal structures of type II-A and II-C Cas9 proteins highlight the features in Cas9 enzymes that support their function as RNA-guided endonucleases. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. The RuvC domain forms the structural core of the nuclease lobe, a six-stranded beta sheet surrounded by four alpha helices, with all three conserved subdomains (I, II, III) contributing catalytic residues to the active site.	3.46657e-32
NC_017464.1|WP_014561883.1|3464469_3464919_+|regulatory-protein-GemA	gnl|CDD|377635	pfam06252, DUF1018, Protein of unknown function (DUF1018). This family consists of several bacterial and phage proteins of unknown function.	7.3617e-17
NC_017464.1|WP_014561868.1|3450619_3450982_-|thioredoxin	gnl|CDD|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	8.6641e-43
NC_017464.1|WP_148267751.1|3467680_3468892_-|MFS-transporter	gnl|CDD|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.37085e-36
NC_017464.1|WP_014561885.1|3465210_3465720_+|phage-virion-morphogenesis-protein	gnl|CDD|227338	COG5005, COG5005, Mu-like prophage protein gpG [General function prediction only].	6.56132e-21

Protein sequences

>NC_017464.1|WP_014561876.1|3459260_3459620_+|hypothetical-protein
MSWFNILKEQVESKSQRTTLFNGTVTCWFNILKEQVESKSQHDDGTISGHIGWFNILKEQVESKSQLMVQQHFTITRWFNILKESRLVGKSKSQQIALCDSSLLVGLISSKNKLKANHN
>NC_017464.1|WP_041294204.1|3458807_3459143_+|CRISPR-associated-endonuclease-Cas2
MMRLNQYRIMWILVLFDLPTDTPKDRKAYAKFRKELIKDGFNMFQFSIYARHCASKENMQAHVKRVREILPSKGHVGILKITDKQFGMMEIFYGKKKEDSGFIESHQLELF
>NC_017464.1|WP_014561874.1|3457860_3458814_+|type-II-CRISPR-associated-endonuclease-Cas1
MIKRTLYFGNPAYLSLKNMQMLIKLPISGNDNEATDEDKNEKYKDRNNQNTFPIEDIGIVILDNQQITITQGLLSSLLDNNSAIVTCDSRHHPAGLFLPLESNLEQSQRFQEQIEASVPLKKQLWQQTISSKIINQALLLNKIGVKSDNMKKWARDVKSGDPDNLEGRAAAYYWKNLFPEELQFQRDRYGKPPNNLLNYGYAILRAVVARSLVASGLLPTLGIHHHNKYNAFCLADDIMEPYRPFVDDIIVTLVRDGEDFTELTPSIKKQLLTIPVIDVFIEEQKRPLMIAVQRTTSSLAKCFSGNQRKIIYPVFRL
>NC_017464.1|WP_014561873.1|3452665_3457732_+|hypothetical-protein
MEFKKVLGLDIGTNSIGCALLSLPKSIQDYGKGGRLEWLTSRVIPLDADYMKAFIDGKNGLPQVITPAGKRRQKRGSRRLKHRYKLRRSRLIRVFKTLNWLPEDFPLDNPKRIKETISTEGKFSFRISDYVPISDESYREFYREFGYPENEIEQVIEEINFRRKTKGKNKNPMIKLLPEDWVVYYLRKKALIKPTTKEELIRIIYLFNQRRGFKSSRKDLTETAILDYDEFAKRLAEKEKYSAENYETKFVSITKVKEVVELKTDGRKGKKRFKVILEDSRIEPYEIERKEKPDWEGKEYTFLVTQKLEKGKFKQNKPDLPKEEDWALCTTALDNRMGSKHPGEFFFDELLKAFKEKRGYKIRQYPVNRWRYKKELEFIWTKQCQLNPELNNLNINKEILRKLATVLYPSQSKFFGPKIKEFENSDVLHIISEDIIYYQRDLKSQKSLISECRYEKRKGIDGEIYGLKCIPKSSPLYQEFRIWQDIHNIKVIRKESEVNGKKKINIDETQLYINENIKEKLFELFNSKDSLSEKDILELISLNIINSGIKISKKEEETTHRINLFANRKELKGNETKSRYRKVFKKLGFDGEYILNHPSKLNRLWHSDYSNDYADKEKTEKSILSSLGWKNRNGKWEKSKNYDVFNLPLEVAKAIANLPPLKKEYGSYSALAIRKMLVVMRDGKYWQHPDQIAKDQENTSLMLFDKNLIQLTNNQRKVLNKYLLTLAEVQKRSTLIKQKLNEIEHNPYKLELVSDQDLEKQVLKSFLEKKNESDYLKGLKTYQAGYLIYGKHSEKDVPIVNSPDELGEYIRKKLPNNSLRNPIVEQVIRETIFIVRDVWKSFGIIDEIHIELGRELKNNSEERKKTSESQEKNFQEKERARKLLKELLNSSNFEHYDENGNKIFSSFTVNPNPDSPLDIEKFRIWKNQSGLTDEELNKKLKDEKIPTEIEVKKYILWLTQKCRSPYTGKIIPLSKLFDSNVYEIEHIIPRSKMKNDSTNNLVICELGVNKAKGDRLAANFISESNGKCKFGEVEYTLLKYGDYLQYCKDTFKYQKAKYKNLLATEPPEDFIERQINDTRYIGRKLAELLTPVVKDSKNIIFTIGSITSELKITWGLNGVWKDILRPRFKRLESIINKKLIFQDEDDPNKYHFDLSINPQLDKEGLKRLDHRHHALDATIIAATTREHVRYLNSLNAADNDEEKREYFLSLCNHKIRDFKLPWENFTSEVKSKLLSCVVSYKESKPILSDPFNKYLKWEYKNGKWQKVFAIQIKNDRWKAVRRSMFKEPIGTVWIKKIKEVSLKEAIKIQAIWEEVKNDPVRKKKEKYIYDDYAQKVIAKIVQELGLSSSMRKQDDEKLNKFINEAKVSAGVNKNLNTTNKTIYNLEGRFYEKIKVAEYVLYKAKRMPLNKKEYIEKLSLQKMFNDLPNFILEKSILDNYPEILKELESDNKYIIEPHKKNNPVNRLLLEHILEYHNNPKEAFSTEGLEKLNKKAINKIGKPIKYITRLDGDINEEEIFRGAVFETDKGSNVYFVMYENNQTKDREFLKPNPSISVLKAIEHKNKIDFFAPNRLGFSRIILSPGDLVYVPTNDQYVLIKDNSSNETIINWDDNEFISNRIYQVKKFTGNSCYFLKNDIASLILSYSASNGVGEFGSQNISEYSVDDPPIRIKDVCIKIRVDRLGNVRPL
>NC_017464.1|WP_014561871.1|3451713_3452103_-|rhodanese-like-domain-containing-protein
MDASQIFFYGLLLILILYIARKVYLYRSVKNYSPAELTEKLKKDKNVILLDVRTPQERKQDYIKGSFHIPLYDLGADKKELLKFKDKEIICYCRTGNRSLIAASKLRKLGFNSANLKGGIIFWNKADLK
>NC_017464.1|WP_050951087.1|3451501_3451717_-|hypothetical-protein
MIKRWAKFILPTVAGLIGGYLYYYYVGCNRGCAITGNPYTSMLWGGAIGLLLTNWKSKPKQNEEKSNEVKK
>NC_017464.1|WP_014561869.1|3451121_3451505_-|DUF302-domain-containing-protein
MKYGFSKITDYSFEEAIQKVTDELKKEGFGVLTTIDVKETLKNKLNVDFKKYTILGACNPSLAHQALQAEEELGLLLPCNVIVYEKEGKSVVSVFDPMILAYIIDNPNMKAVAEEVKIKLERVLEAV
>NC_017464.1|WP_014561868.1|3450619_3450982_-|thioredoxin
MTEHLTKETFLEKVFDYEKNQEWKYQGKLPALIDFWAPWCGPCRIVGPILEELSEEYAGKIKIYKVNTDEEQELGAVFGIRSIPSLLFIPVDGQPKMAVGALPKETLKQAIEKELLTQAA
>NC_017464.1|WP_014561867.1|3449591_3450401_-|META-domain-containing-protein
MKIILSVLITLITFSGCSSHQKMSDNNSNLPDSGKTEIVAPSFYREKFLRGIDFYARGNEPNWVLEIDFDSSMNFSEMNGFNFRTPAVKGIKAQDADVTNFRAQTESGELSVTISKEKCQDNMSGEMFDYKVRIQIKKSNEANFTDFSGCGKYLYDYRLNDIWIMEEMTNVVLKKENLMKGLPMFEFNLADMRFSGHAGCNQMSGAIKVKGNKIIFGNLISTKMACPDMTVEQKVIEALNDKSFTYKIEKLKLVLESESGIRMIFRKTD
>NC_017464.1|WP_014561866.1|3449321_3449588_+|DUF493-domain-containing-protein
MILDENSKRPEIEYPCNWDYKIIGTDVSEMVKVIEEAVGDLTYEITPSNISKKGNYFSLNLTVFVPSEIVRDIIFQKVSASSFVKIVF
>NC_017464.1|WP_014561878.1|3460891_3462493_-|T9SS-type-A-sorting-domain-containing-protein
MKLFPYKLILFMVISFYFPTTFCQHGVGTNWQNEILLPRYNESLNPKQRGVLYNNMVVTSGGRIIISTSELNASNINQIYGHYLTFSDDGGNSWSTPVRFTPTDMVIGASSPKLAIDKNNNVYAIWSSVNPKALFISQLDSNLNILHDSIRVSSNMSYGNFVPHLTIDRKNRIHVMWNEGSTNSSNTAESFYSRSTDGGINWSSAIPISSNDGHHSAFPHAQFDNAGDTLAISWRDSVGGLNRWDVYLVFSTDGGQSWTPPIPTITSSDSDWDPDLIIDTNNRIHLFYTKYPATNPFWGARNYYTYSDNLGASWQLPNNPANGMFSDNYRSQLIEGTRYDEKNNILYVTWKDERDFNFSNGNVQGDIMMTYSTDRGINWITPEFITDRNDSTVGFKTATVLPTGEFAVNYEVISEDDINNPATSVRVYFRKRELSITSVSDDNLSVKDYYLLQNYPNPFNPITLISYKLPISSNVKLSIYNLLGEEVSVLVNEHQNAGNYKVTFDGSELSSAIYFYRLQASKFSDVKSMILLK
>NC_017464.1|WP_014561879.1|3462776_3463193_-|hypothetical-protein
MPTNEIILKLRIDGKDANAVLNLTDDNIKELYKSFKYGQQEVNGLITSISQGFNKAREIIQGFKESFDVISTAFRTHLNEYQKQQAALIKLNTALQQTRQYTESNVNALTNYAAKLQQTTIYGDEVTETVMAQLLAMG
>NC_017464.1|WP_014561880.1|3463531_3463837_-|hypothetical-protein
MQTTTNTYTINQQTYHLKNKYTLKDWGSILKILGGINPDDNNSIALLLTDNRVEDLLAIILDKPVEGDIYENDFNEVSRAINDFFTRKKSLMKNTSGSSIN
>NC_017464.1|WP_014561881.1|3463778_3464042_-|hypothetical-protein
MELKIKIGKGNYALRAFDKNGNQGYYTSSRLNGFNYVNNELVCNVPDESKTYQLKELITLKIVSQGEINANDDKHIHNKSADLSSKK
>NC_017464.1|WP_148267670.1|3464121_3464310_-|hypothetical-protein
MFNTNVLSQTDEMVINDEERTLKIVLEGRVPIYAVSFLYGTGNGGSAADTRGTTGGTIKFGY
>NC_017464.1|WP_014561883.1|3464469_3464919_+|regulatory-protein-GemA
MSQINITQISKIHVLKNQLHLSDEEYGAALEGYGVTTSKDLSYEQAADLIKKLVKLLPKELRENQDQRRKATKQKYDGLGIRWNDKLREHFATPKQLRMLEAIWMTSPRVEHKNEDAFKKFVKRISGKEKLEWVMMNDVRKIKKAIESL
>NC_017464.1|WP_148267671.1|3464915_3465218_+|hypothetical-protein
MKMDWIKDIDFNKFLDGDLKLLIEIVGVEKFIELYRHFAKTAIYFSEKPLMEMKQEYIRKNFRNKSEKELARMLGVSERLVYKIGSMKVRMNDQGDLFDE
>NC_017464.1|WP_014561885.1|3465210_3465720_+|phage-virion-morphogenesis-protein
MNNEFKSPEILELLKKKLSNKNQLMVDIAETMRTAVLKNFETEGSRIGKPWQKLSKDTIKQRQKKGYWPGKILQRTGQLKRSIISSYGEDYAQVSTNLIYAAIQNYGGIIHRSLLKTYLRKKTESKSAQKPKQNKMSSIRIPARPFMLLNEQDLEKIKKKIINSLTGDE
>NC_017464.1|WP_014561886.1|3465835_3467083_-|minor-capsid-protein
MPKDIDIKLAIGLKPEQIINYLKRKGYKISWNWEDTWKEAHTKAFTVAKAMKLDILSDIRNELQKALDNGLTYQQFKENLKPTLKAKGWWGKVKAKDVPSEFPLPPDVDPEKEIQLGSPWRLKTIYRTNIDVAYASGHYKAMMDSIKNRPYWMYNAVLDSRTRPSHRALHGKVFRADDPIWDKIYPPNDWGCRCSVIPLDDNDLEEMNLKPIKGSNELINKLKPGKGWDYNPGKTSLEFDQTFGGNLKLNDNQPTYKDFGRPSVKDVKERIPSPDKFPSIKEIGEEKFIELLKKEFNLEKSDYSVLNTADDDKNIFTLDRLKHGYEKQDGRERYFSYVKSTLQDPFEVWLSEYINEKGEIELRKSYIGLFKDKELNEDIFIVLRQEKDSFVFWNAFERDRNRIDKLRKGYLKYWK
>NC_017464.1|WP_148267751.1|3467680_3468892_-|MFS-transporter
MELFERLAYYGQATILSVFLRDHLKFDEVQAGQLSSIFGGLIYFLPIFAGALADKFGFKKAFSFAFFVLAIGYFLIGSTGIAAFSSWYENKDLFPLLSAILIFTAIGGSFIKPSVLGTVALTTTAETKSLGYAIYYWLVNMGAAIGPFLAYLVRDSFGIEFVYLVSSISCALMFLVTIFIFKEPEAKLNEERESLIQVVKNLWTVVKNIKFIIFLLIFALYWIVFWEFFIVIPFYISDYISPDAPIELVLSTGAWTIILLQIPINRLTKNIPTPTAIMIGFVFAALSWFLLYFVTLAGTVVGLGFIIATIFIFSVGEQTQAPRFYEYLADLAPKGQAALFQGFAFLPIAIAWLLGGTFGGWIYQKFGTKEVGQPEIVFLIIGLVGIAAAAMMFVYNLVVHRKS

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017464_6	6.9|3460012|28|NC_017464|PILER-CR	3460012-3460039	28	NZ_CP051210	Acinetobacter sp. NEB149 plasmid pMsp65, complete sequence	59355-59382	5	0.821
NC_017464_6	6.3|3459936|30|NC_017464|CRT,CRISPRCasFinder	3459936-3459965	30	NZ_CP026601	Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence	116003-116032	6	0.8
NC_017464_6	6.4|3460011|30|NC_017464|CRT,CRISPRCasFinder	3460011-3460040	30	NZ_CP051210	Acinetobacter sp. NEB149 plasmid pMsp65, complete sequence	59354-59383	6	0.8
NC_017464_6	6.8|3460311|30|NC_017464|CRT	3460311-3460340	30	KU594606	Cyanophage S-RIM32 isolate RW_108_0702, complete genome	1345-1374	6	0.8
NC_017464_6	6.8|3460311|30|NC_017464|CRT	3460311-3460340	30	AP013413	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S28-C15	2451-2480	7	0.767
NC_017464_6	6.8|3460311|30|NC_017464|CRT	3460311-3460340	30	AP013671	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48A-MedDCM-OCT-S33-C18, *** SEQUENCING IN PROGRESS ***	33669-33698	7	0.767
NC_017464_6	6.8|3460311|30|NC_017464|CRT	3460311-3460340	30	AP013414	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S29-C21	34081-34110	7	0.767
NC_017464_6	6.8|3460311|30|NC_017464|CRT	3460311-3460340	30	AP013672	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48A-MedDCM-OCT-S38-C24, *** SEQUENCING IN PROGRESS ***	28954-28983	7	0.767
NC_017464_6	6.8|3460311|30|NC_017464|CRT	3460311-3460340	30	AP013415	Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S37-C22	31345-31374	7	0.767
NC_017464_2	2.21|1383139|35|NC_017464|PILER-CR,CRISPRCasFinder,CRT	1383139-1383173	35	NZ_CP010578	Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence	117262-117296	8	0.771
NC_017464_2	2.21|1383139|35|NC_017464|PILER-CR,CRISPRCasFinder,CRT	1383139-1383173	35	NZ_CP015177	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence	111243-111277	8	0.771
NC_017464_2	2.55|1385418|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT	1385418-1385453	36	NZ_CP014850	Bacillus thuringiensis strain HD12 plasmid pHD120039, complete sequence	36254-36289	8	0.778
NC_017464_5	5.6|3459310|30|NC_017464|CRISPRCasFinder	3459310-3459339	30	MN693221	Marine virus AFVG_25M6, complete genome	26292-26321	8	0.733
NC_017464_5	5.6|3459310|30|NC_017464|CRISPRCasFinder	3459310-3459339	30	MN693083	Marine virus AFVG_25M55, complete genome	10781-10810	8	0.733
NC_017464_6	6.4|3460011|30|NC_017464|CRT,CRISPRCasFinder	3460011-3460040	30	NC_017543	Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence	19393-19422	8	0.733

1. spacer 6.9|3460012|28|NC_017464|PILER-CR matches to NZ_CP051210 (Acinetobacter sp. NEB149 plasmid pMsp65, complete sequence) position: , mismatch: 5, identity: 0.821

tacaaaatcagcataataataacaaatc	CRISPR spacer
aacaaaatcagtatattaataacaatta	Protospacer
 **********.*** ********* * 

2. spacer 6.3|3459936|30|NC_017464|CRT,CRISPRCasFinder matches to NZ_CP026601 (Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

agaactaatataattcccccatcattgcta	CRISPR spacer
tgaactaatataattctctcatcaattata	Protospacer
 ***************.*.***** *  **

3. spacer 6.4|3460011|30|NC_017464|CRT,CRISPRCasFinder matches to NZ_CP051210 (Acinetobacter sp. NEB149 plasmid pMsp65, complete sequence) position: , mismatch: 6, identity: 0.8

ttacaaaatcagcataataataacaaatca	CRISPR spacer
caacaaaatcagtatattaataacaattaa	Protospacer
. **********.*** ********* * *

4. spacer 6.8|3460311|30|NC_017464|CRT matches to KU594606 (Cyanophage S-RIM32 isolate RW_108_0702, complete genome) position: , mismatch: 6, identity: 0.8

taatggttcaacaacattttacaataaccc---	CRISPR spacer
taatggttcaacaaaatttt---atgactctgg	Protospacer
************** *****   **.**.*   

5. spacer 6.8|3460311|30|NC_017464|CRT matches to AP013413 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S28-C15) position: , mismatch: 7, identity: 0.767

taatggttcaacaacattttacaa--taaccc	CRISPR spacer
aaatggttcaacaacattattcaaattaga--	Protospacer
 ***************** * ***  **.   

6. spacer 6.8|3460311|30|NC_017464|CRT matches to AP013671 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48A-MedDCM-OCT-S33-C18, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

taatggttcaacaacattttacaa--taaccc	CRISPR spacer
aaatggttcaacaacattattcaaattaga--	Protospacer
 ***************** * ***  **.   

7. spacer 6.8|3460311|30|NC_017464|CRT matches to AP013414 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S29-C21) position: , mismatch: 7, identity: 0.767

taatggttcaacaacattttacaa--taaccc	CRISPR spacer
aaatggttcaacaacattattcaaattaga--	Protospacer
 ***************** * ***  **.   

8. spacer 6.8|3460311|30|NC_017464|CRT matches to AP013672 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C48A-MedDCM-OCT-S38-C24, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

taatggttcaacaacattttacaa--taaccc	CRISPR spacer
aaatggttcaacaacattattcaaattaga--	Protospacer
 ***************** * ***  **.   

9. spacer 6.8|3460311|30|NC_017464|CRT matches to AP013415 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G16, isolate: uvMED-CGR-C48A-MedDCM-OCT-S37-C22) position: , mismatch: 7, identity: 0.767

taatggttcaacaacattttacaa--taaccc	CRISPR spacer
aaatggttcaacaacattattcaaattaga--	Protospacer
 ***************** * ***  **.   

10. spacer 2.21|1383139|35|NC_017464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010578 (Bacillus thuringiensis serovar morrisoni strain BGSC 4AA1 plasmid pBMB232, complete sequence) position: , mismatch: 8, identity: 0.771

-ccatatcaaaaggatatttatattaaaaatgctta	CRISPR spacer
tttata-aaaaaggatatttatatataaaatgcatc	Protospacer
 ..***  ****************  ******* * 

11. spacer 2.21|1383139|35|NC_017464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015177 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence) position: , mismatch: 8, identity: 0.771

-ccatatcaaaaggatatttatattaaaaatgctta	CRISPR spacer
tttata-aaaaaggatatttatatataaaatgcatc	Protospacer
 ..***  ****************  ******* * 

12. spacer 2.55|1385418|36|NC_017464|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014850 (Bacillus thuringiensis strain HD12 plasmid pHD120039, complete sequence) position: , mismatch: 8, identity: 0.778

tttttagttgttttcatgtttttctcctttttatgt	CRISPR spacer
aatttagatgttttcatttttttctccttttctatt	Protospacer
  ***** ********* *************.   *

13. spacer 5.6|3459310|30|NC_017464|CRISPRCasFinder matches to MN693221 (Marine virus AFVG_25M6, complete genome) position: , mismatch: 8, identity: 0.733

gcaccaccttatttaatggcactgtaacat	CRISPR spacer
agagagacttatttaatggcactgaaacac	Protospacer
. *  . ***************** ****.

14. spacer 5.6|3459310|30|NC_017464|CRISPRCasFinder matches to MN693083 (Marine virus AFVG_25M55, complete genome) position: , mismatch: 8, identity: 0.733

gcaccaccttatttaatggcactgtaacat	CRISPR spacer
agagagacttatttaatggcactgaaacac	Protospacer
. *  . ***************** ****.

15. spacer 6.4|3460011|30|NC_017464|CRT,CRISPRCasFinder matches to NC_017543 (Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence) position: , mismatch: 8, identity: 0.733

ttacaaaatcagcataataataacaaatca	CRISPR spacer
ttacaaaatcagcattataatgaaattctt	Protospacer
*************** *****.* *  .. 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	90533 : 98233	8	Pseudomonas_phage(33.33%)	capsid	NA
DBSCAN-SWA_2	2659999 : 2688654	28	Bacillus_phage(33.33%)	transposase,protease,integrase	attL 2655815:2655831|attR 2673789:2673805

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_017464|90533:98233|DBSCAN-SWA
ATTAAGGTAATCTGATGCCTTCGAGTCTTGCAACTGATAAATCATTCAGCAATACAAGATCAGCATCAAACTCGACACTATGCACATAATGCACTCCCACCAAGCCAAGGTCTTTAACTTCCACACCAACATTAGTTGCTATACTTAAATCTGCACCCTCGCCGAATCTCACAGCATATATTGAAGTACAATCAGTGCTGGTTCCAACTGTTTCGTTTTGTGGTATCACTAATGCTCCGTTTTTATCATAACCTGCATTTCTGATCGGGATACCATTGTAATACGGGAGTAAAACACCGAACGAATTAACCTGCCACTGAATAAATTCACGGGCAATTGTTGTTAACCGGCTTAATGCAAACGCATTCATAAATAATACTTGAGCACCGCCGTCAATTTTCTGGATAAGTTGATCAAGCAACTCAAGGAACCTCTGTTGCGCGGTTTTTGATGTAGTATCATTACCAAGAGGCACGCTATGTCCATTTGTAGCTGCGGTTATTTTTTGCCCGGATGGCACGATTGCTTTCAACCCGTTAAATTGAGTGCTCGATACTGTTCCGTTAAAGAAATAATACTGGAATTGTTTCCCAAGATTTCCGGCAAAATTCATCAGCTCTCTGGCTCTTACACTTGCTAAATCCAATCCTCTTCTTTCGTGAGCTCTGTCAACCTGTACCTTGTCGCCAAGGATTTTGAGTGTTGGATTAGCAAATGCCGGTGTGATGACATTTGCAGGATAATCCGCATCGAGCGCTCTGAATTGTCCTCCGCTTGCTGTTGCAGCTTTACGCGCATAATCTGCATTGCCGACAATCGGATAAAACTCAGCGAATTCAAGCACAGTTGCCCTGCTGATCATTTGGGCAACTACCTGCTGAGTGATTGTATCATTGGCTGAAATTTGTTGTAGTTTCATTGGTTCTCCTTTAATTTGGATTTGGTTTCTGTTATTTGTTTCCCATTTGTTTTCTTATTTCTTCGGCAACTATTTTGCTGACAGGCTCATTATCAAAGGCTTGACTTTTTTGATCTTTATGTTCTTTAAAGTCAATAAGTTTAGGCATAAAGTCAATAAGTTTAGGCATCTTTTCTATAAATTCTTTAATCACATCTGTAGATTGAGTTTTAACACCCTCGGAGAATTCAAATTCCGGTGTAAGTGATATGATTTTAAAAATTTTTGTAATTGGGTCTTTCATCTTAGGAAGCAGCCTGCCATCCGATATTGCTTTATCAAGATATTCTTCAAATTCTTTTTCTTCAGATTCCCTTTTTTGTTTATTCAATTCCGCTTCGAGTCTGTTTTTCTCAACAATAATTTCAGCATACTTACTCTGCAATTGTTCAAACTCTCTTTCTTTGGCTAACATATCAGATAACTGTTTCTGATAAATGTCGATTTGCTTTTGCAGTTCCTTAATTTTTTCATTGTCAGATTTCTGATCGCCTGCATCTTCCAGATCAGTAAACTGTTCTCCTTCTATAGTCGCTGACTGATCGTCGTCCTTAAATTCAACATCAGGCAACCCCTTGACCGCTGGGGGTTGGGCACCTAAAAAACCTATGTGCCTCAGCGTTCCATCCGGATAAAGACTTATTGACCGCTTTTTAAATAGTCCTTTATTAACCATTTCGACAAATTCGTTCGCAAGCTGTTTAGGCAATGCATACAAAGTATCTCCGACTCTTTTCAGTTTGTCTACCCAACCGAACGCGGGGGCGTTTGATTTCGGATGACCAATCACAATCGGGGCTTCGTGCTTTGATGGATCATAAGTTTCTACTATTTTATCAAGGTCTTTTTCAGTCCATTGTTTTTCATTCCCGGAACTGTCGGTATGTTTACCTGTTTTGAATATTGCAAACCATTTCATTTTTACCTCTTGCTTTATTAAAATTTTTATTTAATTTTGCTGTGTCAAAATTATTCTAACCCTTTTACCCTCTAAACTGCACCATTCAAAATAATTTAGTCCTCCCCGCAATTAAATTTGCAAAAAAAAAATGGATATAATATGGATTTAACTCCCGATTTAATAAAGGTGCTCGCCAATGGAGGCATTGCCGTAATTATTTTCGTTATCTGGTTCGTTACATATAAAACGCAATCAAAATCTTATACCGACCTGGTGGAAAGATTATTCAAACAAATTGAACAGGACCTCAAATACAAAGAGCTTTTGATTGGCATCCTTACCAGGCTCGAAACCAAAATAGATATACACGAAAGGAGAAATAGAAATGAGTAATAATGAATTGCTCATAGCCAAAGGGCGGCTTTCAGAGCTTAATGAACGCTATAAGGAATTTGAAATGAAGGCTGAGTCTCTTCTGATTCAATTAAGAGAAATATTAAACCCGCTCTCAGATTTTTTGGAACTCGATCTTGAAAGGGTGTTGATGATGGCCAAGGAATTCAGAGTTCTGCAACTTAACGCAAGAGAATGCCTTTTTCAGATAGATAGATTAAAGGAGACTTATAATCTATGAAAAATGCAGCCCTCTATGAAGAGGCAAAACGGCTTTATGTTATTGAGGGTTTTAGCATTGATGCAATTGTTGAACTGTTAAAGAATAAAGTTGCCAGAAAAACACTGTACAACTGGAAGACAGCAAACAATTGGGACGAGCAGCGGAAAATATATCAGCAGGAAAATGAAGACCTGCAGAAGGAAATCAGAGATATTGCCCGTATCGCAATCAAAGAAGCTAAAGCAAACCCTACTCCACACAATATTTATGCGGTTGTTAAGGCCCTTTCTGCGCTTAAACTTATGCAGGGGATTGATGTTTCTGATGATGAAGGCGAAGAGAAAGTAAAAGCCGCTAGCCCCGAAACAATTAAATTTGTCGAAGAATTACTCGGTATGTGATGAGCAAACAGGAAAGGAAATATTTCCTTGACTATCAGATTAATTGGCTGAATGACAATAGCCAGATTAAGGTTTGGGAAAAGTCACGCCGTATCGGAGCTACTTATGTTCAGGCTTACGAAGATGTGCGTGATGTTGTGCTAGGCAATGTGCCTGCAGTCTGGTTCTCTTCTGCAGACGAATCCGCTGCTAAAGAATATATTCTCTATTGTGCTCAATGGGCGAAACTATTCGATAAAGGCGCTCGTGATTTAGGAGAGCAAGTTTTAGAATCTGATAAATCCATCAAAACTTTTACAATAGAGTTCACAAACGGCAAAAGAATAAATGCTCTCTCCAGTAACCCAAAAGCTTTTCGTTCAAAGGGAGGGAAGGTTGTCCTTGATGAATTTGCATTCCATAGTGACGCTGTTGCTCTTTGGAAAGCAGCTAAACCTGTAATTACCTGGGGTTTCCCGCTAAGAATTCTGTCAACCCACAAAGGCAAACAGAGTTTATTTTATAAATTCATCGAATCTATAAAATCCGGTAAGCTTAATTGGTCTTTACATACAACCACAATCTTTGATGCAGTAGAGCAGGGATTGGTAGATAAAATCTACAAACGCAAAACCACAAAGGAAGAAAGAGAAGCCTGGCTAAAAGAGCAGGAAGAAAATTCATTTGATCGCACAACCTGGCTCGAAGAATATTGTTGCACTCCGGTTGACGAAGCAACTGCATTCTTAAGTTATGAACAAATCTTCTCAATCGAACGAGATGGATTGTTTGATGATGTCATTCTGAGCGAAGCGAAGAATCTCTATATTGGCGTTGATATTGGTCGCAAAAAAGACTTAACCGTCATCTGGATTGCTGAAGAAGTAGAGAAGTTTTTATTCACTCGAAAAGTAATTGAACTTGAACGAACTCCATTCAAATCACAAAAAGAAATTTTGTTTACTTACTTAAGTTTACCAGGATTTCGCAGAGCCTGCATCGATGCAACCGGCTTAGGGATGCAGCTCGCAGAAGAAGCTCAGGATAGATTCGGTCGTTACAGAGTTGAGCCAATTACTTTTACAGGGAAAGTGAAAGAAGAACTTGCTTATAATCTTTTAAGATTAGTAGAAGACAGACAAGTTTTTATTCCGCCGGATAAAAATATCAGAGAAGATTTACACAGCGTCCGCAAAATCACAACCGCAAGTAACAATATTCGTTTTGATGTTCAGCAATCGGAAGTAAGCGGACACGCAGATAGATTCTGGGCTTTGGCACTATGCTGTTATGCAGCTAAATCTAATACCGGAGTTGTTTTTGCAAAATCAAAAAATAAAAGAGAGAGTTACAAATTGATTGAAAACTTTATTTAGAGGGTTTTAATGGATATAAAAAACTTAACTCAAGAAATCGCCATCAGACAGAACTTCGACAAGATTGTAACCTACTGGAATATGCTTCCCGATCCTGACCCCATTCTTCGTAAGATTGGGAAAGATATAACTGTTTATCGAGAATTACTTACTGATCCCCATCTTTTTTCAGCAGTTCAGCAGCGAAAAGCTGGGGTATTATCCCTTAATTGGGAATTGCGGCAACAGAACTCATCTCAAAATGAATTTGATTTAATTAATGAATTTCTTAATACATTAAATCTTGAAAATCTTATTGACCAGCTACTCAATACTCCATTATTTGGCTTCACGGTTTTTGAAATAGTTTGGGGAAAGCAAGGTAATTTCTTAATACCAAACAGGATTGATGAGAAACCTCAGGAATGGTTTTTCTTTGATCAATTTAATAATCTAAACATCAAAAAGAATTCAAACTCAATTAAATTAGATGGCGAAATTGTAAATCCTCTTAAATTTATTCTCGTTCAACATAAACCAACTTATCAGAATCCATACGGCGAGCGTGTTCTTAGCCGTTGCTTTTGGCCCGTTACATTTAAGCGCGGCGGATTGAAATTCTGGATCACATTCACGGAGAAATACGGCAATCCGTTTTTAATTGGTAAACTGCCACGAGGGTCAGCTCAACAGGAAATTGATAATCTGCTTACGAGCCTTGAAAATATGATCCAGGATGCAGTGGCTGTCATTCCGGATGATTCATCAATTGACATCAAAGAAGCCCAGCGTTCAAGTTCTGTTGAAGTCTTTCGTGAACTGATGAATTTCCAGAATAATGAAATTTCCAAAGCAATTCTCACTCAAACACTCACAACCGAAGTGCAGGATACCGGCACTTATGCTGCCTCAAAAACAATGAGTGATATGCTTGCAAATGTTCAACTGGCAGACAAAAAACTTGTTGAAAGAGCTCTGAATAAAATTATCGATCTGATTTACCAGGTTAATTTCAACTCCACCGATAAACCAAGATTTATTTTATATGAAGAAGAAGATGTAGATAAATTGCTCGCTGAAAGAGACCAACTACTTGTAAACACAGGGATTAAATTCACAAAAGATTATTATATAAGAAATTATAATTTACTCCCTGAAGATTTTGAATTGGTAAATACTCAGAATCCCCAGTCTAACTTTGCCGATAAAACAAATGCAAAAGTTTTCCAAGACAATTTATCCCAATCTTCGATAGATGAAATTGCCAACCAATTACCAGATAAGCTACTTCAATTACAGATTGAAAGCACATTAAAGCCAGTTTTAACGCTTATTCAAAATGGTGAAACTTATGAAACAATAATGGAAGAGCTTTCAAAAACTTATCCGGCAATGAGTACTAATCAACTTGAGGATTTACTATCAAAGCTTTTGTTTATCAGCGAAATAACCGGTAGAAACTCTGCGTCTTAGCGTCTTTGCGAGAAATAATATGCCAGAAAACATTGACATAAAACTTGCAATTGGACTAAAACCAGAGCAGATAATTGCTTACCTTAAACGCAAAGGTTATAAGATAAGCTGGGATTGGGAAGATACTTGGAAAGAAGCTCACACAAAAGCCTTTACCGTTGCCAAAGCGATGAAGCTCGATATTCTTTCCGACATCCGCAACGAACTCCAAAAAGCAATTGATGAAGGTTTATCATTTCAACAATTCAAAGAAAATATTAAACCAATACTCAAAGCAAAAGGCTGGTGGGGAAAAGTTAAAGCTAAAGATGTTCCCTCTGACTTCCCATTACCGGCAGATGTCGATCCTGAGAAAGAAGTTTTGCTCGGCTCTCCCTGGCGTCTAAAAACAATCTATCGAACAAATATTGATGTTGCTTATGCAAGCGGACACTATAAAGCTATGATGGATAATATAAAGGACCGTCCTTACTGGATGTATAACGCAGTTCTTGACAGCAAAACAAGACCATCGCATCGTGCTTTACACGGCAAAGTGTTTCGTGCAGATGATCCGATATGGGATAAAATTTATCCACCTAATGGATGGAATTGCCGCTGCTCTGTAATACCTCTCGACGAGAATGAGCTTAACGAAATGGGACTTAAACCAATAAAGGGCAGTGAAGAAATTGTTAATAATCTAAATCCAGATAAAGGCTGGGATTATAACCCTGGTAAAGCTGCTTTAGAGTTTGACATAACTTTTGGAGGGAATTTCAAGATTAATGATGCTCAACCAGATTATAAAGATTTTGCAAGACCTTCTGTAAAAGATGTTGAAATCAGAACTCAATCTCCAAAAAAGTTTCCTTCCATAAAAGAAATCGGGGAAGAAAAATTCCTTGAACTTTTGAAAAAGGAATTTGACCTGACTGATTCTTATTATTCTACCATTAAAACTGCCGATGATGATGTTGCCTTATTTACAAAGGATCGCTTACAACATTTCTATGAAAAGAAGGACGGCAGAGAACGATATGCTTCTTACATCAAACCAACGTTGCAAAATCCCTTTGAAGTGTGGCTGAGTGAATATATTAATGAAAAAGGTGAAATCGAATTGAGAAAAAGTTATATCGGTCTTTTTAAAGATAAAGAGTTGAACGAAGATATATTTATAGTGCTCAGGCAGGAGAAAGATTCTTTTGTATTTTGGAATGCTTTTGAAAGGGACAGAAATAGAATTGATAAATTAAGAAAAGGCTATTTAAAATATTGGAAGTAACTCCCTCTGTTTTCAGGTCCCGTGCCCTGGAGGGAACCGCTTTCAGTTAACGCCACGGGGCGATCCCAAAGGGATGGCTAATGCCACTGAAAGGTCGGTATTGCAATTTATTAGTTTAATCATTTTTTGTCAATTCATTTTAAAACCGCTAAGAACGCAAAGATCACAGAGAATTTAAAGATTTTCAAACTCCGCGATTCCTTTGCGTTCTCTGTGGTCTCTGCGGTTAATAATTTATCACTTAATCATTTTTTGTTAATGCATTTATAATCTTACTCTTTATCTTCTCCAAATCCTGGTCATTCAATTTCATAAATGGTCTTGCAGGTATTCTAATCGATCTCATTTTATTCCGTCCTGGCTTTTTCGCTTCTTTGCCTTCCCGTTTCTTTCTTAAATAAGTCTTTAAACTGCTTCTATGAATTATCCCGCCATAATTCTGAATTGCAGCATATATCAGATTAGTACTTACCTGAGCATAATCATCACCATAGCTGCTTAAAATGCTTCTCTTAAGCTGTCCGGTTCTCTGCAATATTTTACCAGGCCAATATCCTTTTTTCTCTCTTTGTTTTATCGTTACCGGAGATAATCTTTGCCAGGGTTTCCCAATTCGGTTCCCCTGTGTTTCGAAATTCTTAAGTACCGCAACCCGCATAGTTTCAGCAATTGAAACCATAAGATTGTTTTTTTTATTAACCTTTTCCTTGAGAAGATCCAGAATTTCCGGAGATTTAAATTCGTTAGTCAT

Protein sequences of DBSCAN-SWA_1

>NC_017464|90533:98233|92776_93025_+|WP_014558961.1|DBSCAN-SWA
MSNNELLIAKGRLSELNERYKEFEMKAESLLIQLREILNPLSDFLELDLERVLMMAKEFRVLQLNARECLFQIDRLKETYNL
>NC_017464|90533:98233|94772_96215_+|WP_014558964.1|DBSCAN-SWA
MDIKNLTQEIAIRQNFDKIVTYWNMLPDPDPILRKIGKDITVYRELLTDPHLFSAVQQRKAGVLSLNWELRQQNSSQNEFDLINEFLNTLNLENLIDQLLNTPLFGFTVFEIVWGKQGNFLIPNRIDEKPQEWFFFDQFNNLNIKKNSNSIKLDGEIVNPLKFILVQHKPTYQNPYGERVLSRCFWPVTFKRGGLKFWITFTEKYGNPFLIGKLPRGSAQQEIDNLLTSLENMIQDAVAVIPDDSSIDIKEAQRSSSVEVFRELMNFQNNEISKAILTQTLTTEVQDTGTYAASKTMSDMLANVQLADKKLVERALNKIIDLIYQVNFNSTDKPRFILYEEEDVDKLLAERDQLLVNTGIKFTKDYYIRNYNLLPEDFELVNTQNPQSNFADKTNAKVFQDNLSQSSIDEIANQLPDKLLQLQIESTLKPVLTLIQNGETYETIMEELSKTYPAMSTNQLEDLLSKLLFISEITGRNSAS
>NC_017464|90533:98233|96234_97482_+|WP_014558965.1|capsid|DBSCAN-SWA
MPENIDIKLAIGLKPEQIIAYLKRKGYKISWDWEDTWKEAHTKAFTVAKAMKLDILSDIRNELQKAIDEGLSFQQFKENIKPILKAKGWWGKVKAKDVPSDFPLPADVDPEKEVLLGSPWRLKTIYRTNIDVAYASGHYKAMMDNIKDRPYWMYNAVLDSKTRPSHRALHGKVFRADDPIWDKIYPPNGWNCRCSVIPLDENELNEMGLKPIKGSEEIVNNLNPDKGWDYNPGKAALEFDITFGGNFKINDAQPDYKDFARPSVKDVEIRTQSPKKFPSIKEIGEEKFLELLKKEFDLTDSYYSTIKTADDDVALFTKDRLQHFYEKKDGRERYASYIKPTLQNPFEVWLSEYINEKGEIELRKSYIGLFKDKELNEDIFIVLRQEKDSFVFWNAFERDRNRIDKLRKGYLKYWK
>NC_017464|90533:98233|97723_98233_-|WP_014558966.1|DBSCAN-SWA
MTNEFKSPEILDLLKEKVNKKNNLMVSIAETMRVAVLKNFETQGNRIGKPWQRLSPVTIKQREKKGYWPGKILQRTGQLKRSILSSYGDDYAQVSTNLIYAAIQNYGGIIHRSSLKTYLRKKREGKEAKKPGRNKMRSIRIPARPFMKLNDQDLEKIKSKIINALTKND
>NC_017464|90533:98233|90533_91451_-|WP_014558958.1|DBSCAN-SWA
MKLQQISANDTITQQVVAQMISRATVLEFAEFYPIVGNADYARKAATASGGQFRALDADYPANVITPAFANPTLKILGDKVQVDRAHERRGLDLASVRARELMNFAGNLGKQFQYYFFNGTVSSTQFNGLKAIVPSGQKITAATNGHSVPLGNDTTSKTAQQRFLELLDQLIQKIDGGAQVLFMNAFALSRLTTIAREFIQWQVNSFGVLLPYYNGIPIRNAGYDKNGALVIPQNETVGTSTDCTSIYAVRFGEGADLSIATNVGVEVKDLGLVGVHYVHSVEFDADLVLLNDLSVARLEGIRLP
>NC_017464|90533:98233|93021_93408_+|WP_014558962.1|DBSCAN-SWA
MKNAALYEEAKRLYVIEGFSIDAIVELLKNKVARKTLYNWKTANNWDEQRKIYQQENEDLQKEIRDIARIAIKEAKANPTPHNIYAVVKALSALKLMQGIDVSDDEGEEKVKAASPETIKFVEELLGM
>NC_017464|90533:98233|91482_92409_-|WP_014558959.1|DBSCAN-SWA
MKWFAIFKTGKHTDSSGNEKQWTEKDLDKIVETYDPSKHEAPIVIGHPKSNAPAFGWVDKLKRVGDTLYALPKQLANEFVEMVNKGLFKKRSISLYPDGTLRHIGFLGAQPPAVKGLPDVEFKDDDQSATIEGEQFTDLEDAGDQKSDNEKIKELQKQIDIYQKQLSDMLAKEREFEQLQSKYAEIIVEKNRLEAELNKQKRESEEKEFEEYLDKAISDGRLLPKMKDPITKIFKIISLTPEFEFSEGVKTQSTDVIKEFIEKMPKLIDFMPKLIDFKEHKDQKSQAFDNEPVSKIVAEEIRKQMGNK
>NC_017464|90533:98233|93407_94763_+|WP_014558963.1|DBSCAN-SWA
MSKQERKYFLDYQINWLNDNSQIKVWEKSRRIGATYVQAYEDVRDVVLGNVPAVWFSSADESAAKEYILYCAQWAKLFDKGARDLGEQVLESDKSIKTFTIEFTNGKRINALSSNPKAFRSKGGKVVLDEFAFHSDAVALWKAAKPVITWGFPLRILSTHKGKQSLFYKFIESIKSGKLNWSLHTTTIFDAVEQGLVDKIYKRKTTKEEREAWLKEQEENSFDRTTWLEEYCCTPVDEATAFLSYEQIFSIERDGLFDDVILSEAKNLYIGVDIGRKKDLTVIWIAEEVEKFLFTRKVIELERTPFKSQKEILFTYLSLPGFRRACIDATGLGMQLAEEAQDRFGRYRVEPITFTGKVKEELAYNLLRLVEDRQVFIPPDKNIREDLHSVRKITTASNNIRFDVQQSEVSGHADRFWALALCCYAAKSNTGVVFAKSKNKRESYKLIENFI

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014558958.1|90533_91451_-	hypothetical protein	A0A1C9EHV7	Gordonia_phage	4.6e-18	29.4
WP_014558959.1|91482_92409_-	hypothetical protein	A4JWJ9	Burkholderia_virus	1.7e-28	34.8
WP_014558961.1|92776_93025_+	hypothetical protein	NA	NA	NA	NA
WP_014558962.1|93021_93408_+	hypothetical protein	NA	NA	NA	NA
WP_014558963.1|93407_94763_+	Mu-like prophage protein GP28	Q5ZQY5	Pseudomonas_phage	1.3e-80	41.1
WP_014558964.1|94772_96215_+	DUF935 family protein	Q6QIC0	Burkholderia_phage	6.2e-86	37.8
WP_014558965.1|96234_97482_+|capsid	minor capsid protein	Q6QIB9	Burkholderia_phage	7.8e-69	45.4
WP_014558966.1|97723_98233_-	phage virion morphogenesis protein	A0A2D1GNX5	Pseudomonas_phage	8.2e-17	39.1

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NC_017464|2659999:2688654|DBSCAN-SWA
TTTAAGCTGCTTGTTCCAAAGTTTTCCAATAACTGGCTCTGTTTAGTTCAGCTTTTTCTAATTTTAATTCTCTTTGAGTAATTCTAATTTCTTTTCTGCCTAACAGATAATCTTCTGGTGTTAGATAATTAAGTGAAGCGTGAAGTCTTTTAGTGTTGTAGAAGTTTACGTAATCTTCGATATAAATCTTAAAGTCATCAAAGCTAACAGGTGATTTTATTCTTAAACATTCTTCGCTAATTGTTCTATGATAGCGTTCAATTTTACCGTTAGCCTGTGGATAATTAACCGATGTTTTTACGTGAGTAAATTCAGCATCTTTAATAAACTGCTTAAATTCTTTTGAGATAAACTGAGCTCCATTATCTGATATAATTCTTGGTCTGGCTAATGGAAACTTTTCCTTTGCATTTTGAACCGTAAGTTGTACATCATATTCATTCATAGTATGCCTTACCTCGTGATGAAGTGCATATCGTGAGTAACCATCAAGCACAGAAATAAGGAATAAGAATGTTCCGTTAAAGTTCAAATATTTAATATCCACGTGCCAGTGTTTATGCGGAAAATCAGGTTGCTTAAATCCCGTTGCTTTAAGATTGCTTTTCTCAGTATTCCACTTGTTTAATAGACCAGCCTTCTTTAGAATACGATAAACAGAGGATGGACTGACTGCAACGATATTTAAGTCCAGCATTTTATAAGCAACTCTGCGGTAACCGTCTTTAAGAAAATAATCACTCTCAGAATAATGTTCTCTTGCAAAGTCTTCTATTAGCTTTACTTCATCAGGCGTTAACCAATGAGTCTTTGGTATCTTTCCGTTATGATTATTGGCTGTGCCGGATCTTTTTACCCATTTGTAAAACTTAACTCTGCATAATCCGATAATTGGCAGTAGTTTTTTTACCGGTATTCCACTTCTAAATGAAAGATATGTAATCTGTTTTACTACCGAATCTCTTATTTCTGGTTCAACCCACATTTTACTTAATACCCCCCATTCAGCTTTTTTTTTAATCTTAAGTTATCCTCTACTATTTCACTTATCAAAGAATCTTTGTCCTTTAGTTTTTCTTCCAATTTACTAAGTTTTACCTGATCAGTATTACTGTTTTTCTTATTTGAAAATCTTTCCAGGGCTCCGGCAAATAGCTCTTTCTTCCAGAGATAGAACAGATTAGGGTTGATATTATACTGCTCACATATTTTAGCAACCGAAACCTGGTTTTCAAGGTGTTCTCTTAAAACCTGCACTTTAAATTCTGCTGTGAATTTTCTTTTTTCGTTTTTCATTTTTACTCCTGAAGTTTGTTATCTATAATTTATCTCTTCAAAAGTAACTTTCCAACTTAAGCATTATACTTCTTCATATTCACCAATTGCAAGGTAGTATTTATCATCCTCAAGAACTGGTTTTGTGTAGAGCTGATAGAAATCTGTTACATCTTGTCCAAGTAAATCAGGGTCTTGACTTTGAGGTAAGATATTATTGTCCTCAACCCAGGTTTCTCCGTTCCAGGTATAAACAAACGGACAGCCGTGCGGTGTTGTTGCAAGGTCAACAACATATCTTTTTACATCAGAACCAATGCTATTATAAACTGAACACTGAAGCTCGATTCCAATGGGTGCTTCAATAGAATATTTGCCGTTTTCTGATGCTTTATAGTTAAGCGAATTACTACTGTAAGAAATTTCAGCTTGATTACCATAAAATGAAACGGATACGCCAGGTTTACCATAAACTATTGACCAGTTATAAGTTAAATTACCGTTGCCTTGCGAAAGATTACAGGTAACGGTGCCGCTAGTTCCTTGATAAATTGGTTTTGGTGATTGTGTGAAGTTGGAAATTATTGGTGCAATTGTTGGAGGAGGTGGGATTAGGTTACATTCATTGGCAAACCAGTATAATAAGCCCGCTGTTGCACGTATGGCTTGAGGAAACATTTTATTCCTAACGTTTATTATTGCATCATAATTCCAAGGACCATTATCAGATGTAGGTATTCCAAATTGGGATACGTTTAGTGAATTTAAATATGCTATTTCAGCTGAAGTTCCATTTCCACTGAAATAATCATTATTAGATTTTTTATGTGGCCCTTGAGTTGAAAAATGATTAGACATTTGGTTTGTGGTGTACATTAAAAAATGAAGTGGATTAGAAGGTTGATAAAGTGTTGGATTAATCACACCTCCAATTTGTGTGTAAATATTATCTGCATTCCAATAAAAATCATCTCCAAAATAATTTTCATAATAGTCGGGAATAAGTGCATCATCGTTACCGTGAGGATCAATATTAGCATGTGCTGGTACGCTCATATCTTGTAGCAAGTGACACATCCTACCTAAAATTTCAAATGCAATTCTTTCCCGAAATTCTTGACCAAAATAAACAATTGTTGGGTCGCAATACTGCCAATTACCGCTTATTCCTCTATATCCCAAACCATAAGCTTTGCCCGTTCTAAAAAATTCAAAAAGATTATCGTATTTAAATGCCATACCAATAATAGGATACGAAGGGGGGACACAAACTTGCCAACCAGGCGCCCCAACTGTTTGACCATAATTATAATGAACAATCCATTCTCCATTTAGGTATTTTTGGATTTTTTGATATGCGTTGGGAACCGTAAAACTCGTTACGTGTGTACCTAAAAATGTTACGCCGGCTCGCATTGTTGTACTTAATTCGTCACCATCATCTGCATACCAAAAGTGCGTAGAACTAACAAAACCGTCTGGAGTTAAGCCACCAAAAATTGAAATAAAAGAATATATTGAACCGGTAATACCAGTTAATGTTGGAGGAGAAGATTTTGAATAGCCATAGACAACATCTTCTTCATCTTCGCGCCAAGCGCCGGTCGTAATATATCCTCTTTGCCAAGGTCTATCCCCAATATACCAACTTGATGTACCACCAATTCTTGATTGAAGTGTGGGAATATCATAACCTATAGATAATTTCAATAAATTATAAGCTTCGATAGTTATATATTGATGTACGTGTTGACGGTGAGCAATACTAACTGAAGTAATAAGCACTACAAAAAATAATATCTTTTTCATTTTGTTATTCCTTTTCGATAAAATTAAAGTTTAAACCAATTTTTAGAGATGGTGTGTATAATACATTAGCTTCTTTGGCTGCACTTACGCAAAAGCCAATTGCCCAGAAAAAGTTAAAACCAGATTCATCTATAATTTCTCGGCCCAAATTAAAATCAAAATAATTTCCTTTGGTTATTGAATTAATATGATCGTCAAAACTCGTAGATAAATATGAAATATACTCTAACGACGTGGTGTTAAAAAATAGAAAAGGTGTATGATAAGAAATTTTTATTCCAACACCATTTCCACCGTGAGGGAACCCCATTGCAGATGAACCAATAAAAGTTTGGGATCCCTTGATTGCTATAGATATTTTTTCCGAAACTTGATACCCAATTCCAAGTGAAAGAAAATCTAATATGCCAATACTTGAAAAAAGAAAAATACCTCTAAGATTATTATCTATTTCAGCATTATTTTCAAAATTACTATAATCGGTGCTTCCAATTAAATTTATCTGACCTAATAAAAATTGAGTATTTAATAAGGCGACAATTAGTACTAACAAAATTTGTTTCATATAAACCTCTTGATATGTTTTTTAAGTTAATTTTTACAATTATATTTTTCAAATAAAACCAGTAGTGTAAAAGTTTTTTTGTTGTTTCATCACCGTTATCTTCCCTCGAGAGTAAGTATAACGGTGTGGCTGCTAACCCGCCGCCCAGAGCAGACGGCTATGTTAGAAGCACAATACCAATAATTATTTAAAACTTATTTTACTGAACACTGCCGAACAACGAACCCGCATACTTTAACTCTGCCGATAATTAGTAAACTGCCACATTTAAATGGCGGTCGGTGTTGAGCAGCAGGTTATACTTACGGGCATAATTAAAAGGGCAAACCTTAACAGCTTGCCCTTTTGTTTTTGTAACGGTTTTATTTAACCAGCATTAATTTTTTCGTAGCTGTAAAATCATTTGCATCTAATCTATATACATAAATCCCTGATGGTAATTCTGAAGCATTAAATGTTACAGAGTATTTACCCGGTTCTTTTCTTTCGTTGACAAGTAATGCAACTTCTTTACCAAGCATATCGTATATTTTTAATGTTACGTTAGAATTTTCTTTAATAGAAAAATCAATTGTAGTTGATGGATTAAATGGATTAGGATAATTTTGAGTTAAAGTATATTTCTCCGGGGTTTTCTGATTTTCACCCTCTCCACCAATTTTATACGGTATTCCACCTAGTACGTACGTACCAACACTTCCTGAAGGATTTGAAACCAGAGATTGTAAATCAACCGCTTTTAATCTGTAATAAACCCAATGACCAGCTTCGCATTGTGCAGGTGGAACAGCAGTACAATAACTTTCTGTTACATCTTCATAATAGCGGTTAGCTGTTTGAGTAAGCGCAACCCAACCAAATTCACCTGCATACTTTTCAACCACATATTGATATATATCTGGTTCAGCATTTGCCGGCCATTGCAAATACGGATGGTTATTTGCACTTTTGCTAATTGCCAAGCCTGTCGGTGCAAGAGGTACTTGATTATTTTGTTTATACCTCAAATAATGTAATGCTTCAAGGGAAAAGTTACAGTTGATAAAAAATAATGTGTATTAAAAGTAATCATAATTTAAGCTGCTTGTTCCAAAGTTTTCCAATAACTGGCTCTGTTTAGTTCAGCTTTTTCTAATTTTAATTCTCTTTGAGTAATTCTAATTTCTTTTCTGCCTAACAGATAATCTTCTGGTGTTAGATAATTAAGTGAAGCGTGAAGTCTTTTAGTGTTGTAGAAGTTTACGTAATCTTCGATATAAATCTTAAAGTCATCAAAGCTAACAGGTGATTTTATTCTTAAACATTCTTCGCTAATTGTTCTATGATAGCGTTCAATTTTACCGTTAGCCTGTGGATAATTAACCGATGTTTTTACGTGAGTAAATTCAGCATCTTTAATAAACTGCTTAAATTCTTTTGAGATAAACTGAGCTCCATTATCTGATATAATTCTTGGTCTGGCTAATGGAAACTTTTCCTTTGCATTTTGAACCGTAAGTTGTACATCATATTCATTCATAGTATGCCTTACCTCGTGATGAAGTGCATATCGTGAGTAACCATCAAGCACAGAAATAAGGAATAAGAATGTTCCGTTAAAGTTCAAATATTTAATATCCACGTGCCAGTGTTTATGCGGAAAATCAGGTTGCTTAAATCCCGTTGCTTTAAGATTGCTTTTCTCAGTATTCCACTTGTTTAATAGACCAGCCTTCTTTAGAATACGATAAACAGAGGATGGACTGACTGCAACGATATTTAAGTCCAGCATTTTATAAGCAACTCTGCGGTAACCGTCTTTAAGAAAATAATCACTCTCAGAATAATGTTCTCTTGCAAAGTCTTCTATTAGCTTTACTTCATCAGGCGTTAACCAATGAGTCTTTGGTATCTTTCCGTTATGATTATTGGCTGTGCCGGATCTTTTTACCCATTTGTAAAACTTAACTCTGCATAATCCGATAATTGGCAGTAGTTTTTTTACCGGTATTCCACTTCTAAATGAAAGATATGTAATCTGTTTTACTACCGAATCTCTTATTTCTGGTTCAACCCACATTTTACTTAATACCCCCCATTCAGCTTTTTTTTTAATCTTAAGTTATCCTCTACTATTTCACTTATCAAAGAATCTTTGTCCTTTAGTTTTTCTTCCAATTTACTAAGTTTTACCTGATCAGTATTACTGTTTTTCTTATTTGAAAATCTTTCCAGGGCTCCGGCAAATAGCTCTTTCTTCCAGAGATAGAACAGATTAGGGTTGATATTATACTGCTCACATATTTTAGCAACCGAAACCTGGTTTTCAAGGTGTTCTCTTAAAACCTGCACTTTAAATTCTGCTGTGAATTTTCTTTTTTCGTTTTTCATTTTTACTCCTGAAGTTTGTTATCTATAATTTATCTCTTCAAAAGTAACTTTCCAACTTAAGCATTATAATAATTATCGCTGCCTCTCATCAAAGTAAGGAACAAGTCATTCGATACGCTGGTAAATCCAACATTTCTCCCATAACTCGGATCAGTATCAAGAAGAATTGGACTCGTCCAGCTTGAACCGTTATAAGTTCTATATGCCAAACCGAAGTTAGGATCAACATATTGCGGATAGACAACAAGATGGATATTATCGTTTGTTGTCTTGGTAAGATTAAATGCATTTCCAGATTCCTCAATTGAAGTTGCAAGAGTAGTCGGGCTTGACCAGGTTGTACCTGAAACGCTTCTTGTTCTATACAATAAATCATTACGAATTGGAACACCATTTACATATTTAGCATAAAACATAAATAACGTGCTTCCTCTTACCAACAGTTTTTCCTTAACAGTTTCTTCAGAACCTGAAACTACAGATTGCGGTGTTTGCCAAACACCGTTAAGCCGGTCTCTTGTCCCTGCATTCCCCGGCGTTCCAGGAACATCAAAGTATGATGTGTTAAAGGAAACGTGAACCCTGCCTGATGAAAATGAAACCGAAGGACGACCGCCAACTTGTGCTGAGCTATGGTCTGTTACGTTTTTGAATTCTACTCATTGGTTATTTGCCAGGTCTAATCTATAGTAATAGGTTTCAAAATACGGGTAATTATCTCTAGTAGCCCATACTAGATGAATTCCATAACCATTCTCGTATACAGCATCAATACCATTGCAAAGGTTCGATGTTGTACTAATATTATTTGGTAAGTTACTCCAGCTTGTACCGCCGTTTGTTGAATATTTGCCTTTAATGTTATTGCCTGCTTTATATAAGGCATATACTACTTCATTCGAGGCAACTATGTTTGGAAAATCTCCATCTGCTTCCATAGTGTATGTTTTACCTGCATTAACAACTCCTGATGAATTAAGGAAGTAATATACAATGTTGCCATTTGTTCTTTTTATCAATACGTGAATACCTGAAGTATTTGCAGTCAAATCCATCTTTTCAAGATTTGGTTCATTGATGGAAGTGGTAATTGTGCTGTTCCATCCTTGCGCTAATGCAAAGGAACAGAATAAAACTAAAAAGAAAAATATCCTTTTCATTTTTTGACTCCTTAAAATTTAATAGCTATTTAAGTAACAATGATTTAATAGTACGTGTATAATTACCTGTTTCATTATTTGCAGATAGTTTTATTAAATACACACCTGAAGGCAACAACTGTCCATTGCTGTCTTTTGCTTCCCAGTTAATTGTATAAATGCCGGGAGATAATTCTTTGTTTAACAGTGTAGTTACTTCTTTCCCTAATATATTGAATACCTTTATAGAGACAATACTCATTTGATTTAATTCAAATTTAACTGTAGTTGATGGATTAAAAGGGTTCGGGTAATTTTGAAGAATCTTTAACCTTATCGGTTTAATTTCATCACCATTAATACTTGTTGTACTATCAGGCTTATATATCTTTGTAACATAACGTGTGTTGAATAAATTTGGTTGTACTTCCTTAGTGTGATACATTGAAATCAGAATTGCATATTTGCTAGTGCTTTGCAGGTTATACATTATTGCTCCCATATAAACCTGATATTCTTCCTCTGTATTAAGCTCATTTTTCTTAATGTAATACACCTCATAAGTATGATGATTCTCTCTTCCATTGAATTCGAGTATTATAAAATTGTCGTCAATGCATACAGCAATTTCCTCAGTTCCATCATTATCAATATCAATTGCCTGCATATTGCCTGCATAGAATGACATTATTCCAACAAGATCAATCCTTCCTACTGCCTGATAACTGTTGTCGCCATTTGTTTCAAAGATTGTTATCCGTGTTGTACCTATTCCGTTATAATAAGCATCTGCTAAAACCCAGAACTCCGGCTTTCCGTTTCTATCTATGTCATTTGTCCAGGTATGTACATAAGCATTATTGCTTTCAACGCTTCCCTGCCAAACATCGTTATATTGGTTATTACCTTCATTCTCTATCACAAAAACTTTTCCTCTAACAGTGCTGAATACAATATCTGTTTTTCCATCAAGATCAAAATCTCCAACTGAATAGCCTCCTATTCCTAGATCAATTGGATCAGGCACTTGAAAGTGATAAACAGAATCGAAGTTGTTGATAATGTGATTATATTCAAAAATGTAAACATTTGATGCTTTGTCAAATACTAAATCAGTTTGCTGATCTCCATCAAAATTTCCCAAAGTTGGATCATCGAGTTGATATGGCAGATCTGGATTGAATACAAAATCTAAGTTCGTTGCTAAAGTTGTATCAGTAGGTTTTGAGTAGAATCGCTGTTCATTTGGTGTCAAAATGGAGGGTGTAAAATGAACTTCCTCTTTTCCGTCGCGATTAACATCATAAATATTTTGAATGTGTACAACAGTATCGTATTGAAATATCTCATAAAATATTTCTGAATTATTTAATTCATAAACTGTTACAGGTTCTGGCAAATCAGAAGAAGAAAAATATTTTCTTGCGCCGTACAATTCAGGTTTACCATTATTATTAACATCATCTATCCTTAAATAATCAAACTGCAAATTGCTTATAGGCACTTCCTGCCAGAAGCTGTATTTATGATAATAAAGAGATGTATCAATAGTTGTAAGGTCTATTATTGTGCTGTCAAAGGTTGGGGAATAGGTTATGTTTCTTTCATTAATGGGGACATAATCGCCGATATTTTTATACAGCACTTTACCACTAGGATATTCTAACCTGAGAATATCCTTTTCTACTTCTGTAACCTTTATATCGGTTCTTTTAGTTAACTGCTCAAGTTTTTCTTCTCTTGTTTCAGACCTGTTCTGTGAAAAAAGAAAACCACTTACAACAAACAACAAACAACAAACAAATTTTAATCTCATCTTTATTACCTTTTAATTTATAAAATAGGGAAAGAAATATTTCTACAATATCATATTCATATAAAACCAGTAAAATATGCTTTTAAATGTAATAAGCTTACAGTTAAACATTTACCCAATAATACAGGGCAAATGTTCAAAACAAATTCTTTTTCTATAAATAAAAAAACCGTTACAAAATACATCTTCATTAAAGAGTAAGTATAACGGCGTTGTTTTTAAGCCGCCGCCCAACACAGCAATGCAGCTTTGAAAACCAATGCCAATAATTATTAAAAAACTTTTTTAGTATAACCTACTTCAAACAGAAACTTAGTTTTGTCAACCTAACTTGAAAAACAGTAACCGACCGCATCGAAGAGGCGGTCGGCTTGAAGAACGTGTTAGGCATTAATACTTTTTTTATTATGTTTTGTGAATTAAGCAATACTATTTGTTCTGTTGTTTTTCAAGAACTGCATTTACGTGTTCTTGATCTAAACTATACCAATTTCCAGTTGCAGCATCAATAATAACCGGAAACAAACCACCGAGTATATCTAGAACAATCCATCCACCTCCAACTGAATTATTTAATACAACGGTCTTAGTTTCATAGCCGTCTTTCTTAAACTCAATAGTATAAGAGTTCTTGGATTTTAGTTCTAACTGAAAAGGTGTTGTGCCTAATAGACTTCCATTAACATAAACTTTAGCGCCAGTAGGATCTGATGAAAAACTTACATCATCTGTTGAACCTTTGAAAATGGTTGCGCAACTAGTGAATATGAAAGAAACAACAATAAGAAGAACAAGAACAGAACTGTGAAAGAAGAACTTTTTCATAACTGACTCCTAACTTTATTTTGACAATGTTTATCAAATTAAAGTCAGACATTGGCACATTGCCGTTAAGCCAAATGCCTAACTATTACTTATACTGCGTTTGTATTTTAACTTGGGAACATATTTATGCACGCAGCTGCATATCTACGTTCCAATTGTTTTCAAATTTGCTCAAAATCTTAATTTTTAAAAGTAGTTTGTGCATATATATCATCCTAACTGATTTCAGTCTAATGGACTTTTAACTCCTAATCCTCTGTTTAAAACATGGGTGTAAATCATCGTCGTTTTAACTGAACTGTGGCCAAGCAATTCCTGAATCGTTCTGATATCATAACCATTTTCGAGTAAATGTGTGGCAAATGAATGTCGGAAGGTATGTGGACTTGCTGGTTTCGTTATACCACTCTTTTTAACAGCATCTTTTACTGCACGCTGTACGGTACTTTCGTGAATATGCCATCTGGTTACTAAACCACTATCTTTATCTTTTATAAATTTATCTGCCGGGAAAACATATTGCCAACCAAATTCCTTTGCTGCATTAGGATATTTCTTGCTTAATGCATACGGTAAAATAGTTTCACCTTTGCCTTTGGCTAAATCACCTTTATGTTGTTTATAAACATTATTTAAGTGTTTCTTTAGTTCCGGAATTACAGAATCGGGAAGAATTGTGTGTCTGTCTTTCTCACCTTTACCATCCCTGACTAATATTTGCTTATAATCGAAATCAATATCCTTTATCCTTAGCTTTAATGCTTCGGATAATCTTAAACCACTGCCATAAAGTAATGAAACAATTAGTTTATTTGTTCCTTCAAGATTATCAAATACTTTAGCAACTTCTCTTTTGGATAAAACAACAGGCAGGTGTTTTACTCTAGTTGACCGTTTAATATTTTCAATCCAGCCAACATCTTTTTTTAGAATGTTTTTGTAAAGAAATAAAATTCCCTGCAATGCCTGGTTCTGCGTAGCAGAAGAAACAAGATAATTAGTTACAAGATTATCAACGAATGACTTAATTTCTCCAGCGCCCATATCTATTGGATGACGCTTATTGTGGAATAAGATAAATCTTTTTATCCAGCCAATGTAGGCTTCTTCTGTCTTTTTGCTGTAGTGATTTACCCTCAATTCATTCCTTACCTGATCAAGTAATTTTTGTTTAACTTGTTTTTGTTGTGGAAGTACGGTAGCGGAAAAAATATTTTGTCTTATCCCGTGCAAAAGTTTAGTCCCTTTTTTTCAATAAACTTAAAAAAGTTAGTGTCTTATGTCAATTTTATTTTCAAAAATTTTTATTTGACTATAGACAAATAAAGATGTGGTTTGGATAGTTAAGATTATCTATTCCGATAAACCGAAAATTCGGAATGACAAATTGCTTCTTTGTTGTTACTTCTGATTGCGCCGGCATTAATGCCGGTGAAAATATAATTCTAAGAAACACCCCGGGTCCGGGCTTTAGCCCAATTAACAATAAGAGTGTTTGGACTAAAGTTCATATTTATTGGAGTTAACATTTTGTCCACGCTCTGAAGAGCGTGGCAATTAAATTTATTATAATTTTTTATTCATCTTTACCTACCGAAGGTAGAAATTCATCTACCAAAGACATTCATTCAATTTTACGCTATTCGTGTTGAAAGATTTCTCCCCCGACAGGTCGGGGTCGTAATGACAATTTTTAAATGTTAACTATAGAAATAAGCATTCATTCAAGAAGTGAAAATTCCTCTTCCTGATAAATCAGGAATTTGGAATTACAGAACCCATTCAATCATTCTACAATTCATTCATTCAAAAAAAATATTTCTTTCAATTCTGATGTACTTTTAATAAGAAAAGTGTAAGACCAACAAAAAGTAAAATAAAGTTTTAATTGGTTAGTATTAAAATGAATAGCTTACTCCAAGCATAAACACTGCACCGTTTACGCCAACTTTGGAGTCGAATGTATCTTGGAGAATTGTTATTGTATTTCCTTTGTAATTAACTGTTGTACTGTTGTATTTGCTTTTAACTTTTACTTCGGGTGCACGGAATTTCAGTTGTAATCTGATACCGATATTTTCTTTAACAAAATATTCCATTCCGGTACTTACCTGAATTCCGAGTACTGGTTTTGTTTCAAGAATTGAAATATCTGTATCTCCAAATTTTCTTGTATGTGTGGCGTAATAGAATCCTACTCCGCCAGCCATATTAAACTTAAATGATTCAGTTGAAAATGGAAGGATATTATAAACAGATAATTCTATCGGAATGAATGTAAAGCCATCTTCACTTTCAAGCAGTATAATTTGACTTCCGGCTAAAACAGTAAGAAAATTTCCTCTCTCACTTTTGCGTCCGTATTCCGCACTTAATCCAACTACAACCGCATCACTGATTTTATATCTTACTTCCATACCCGGTGAGAAAATGTCTTTAAGCTCAAATGATTGATTTCGTAAAAAGATATCGCTTGAATTCGGATTAAGAAATAATTCTGCAGAGGTGATGTAAACAGCACCAACACTTATACTAAAATCGTGATTCTGATATTGACTGAAAGCAGAAGCTGCTGCAAAAATCAATATTAAAAAAATTTTCGGAATTAGTTTATTCATTACTTGCAATCTTTGAATTTTGTTTAAAATAAAAAAACCCCCGAATACTACCCAGAGTATCGGGGGCTAAAATTCATAAGAAGATTAATATCCAAAGAACATAAATCTGTTATCTACAATCTTTGCATCTTTTTTCATCTGCTCAAGCCATTCGTTAATAAATCTTGCTTTCTTCTCATTAAGCAATTGCATTTTTATTGTTGCTGCCTGAGCTGAATAAGTATCTTTATCAAAAGGAGTTTTCTTAGTTAGTCTCATAATGTAATAACCGCGCATTCCTTTGAATGGTTCGGTTGTTTTTCCTACTTCGAGTGATTGTGCTTTATTTATAAAAGCATAGTCTCGTCCGAGATTAGGAATTGTTCCCTGAGCAGTAAATGGTCCGGTTTGCTGAATAGTTAAATCAGGACGAATCTGTGGTATTTTATAAATATCACCACCTGCTTTTGAGTAAACTTCTTTTGCAGTCTTCTCAAGTTTCTCAAATTTCTTTTCTCTGATTACTGCCGGTTTCATCGAAACTTTTACTTCGTCAAACGGAGTAAATCTTTCGCCTAAAGCTTCAGCAATTCTTACAACTACATAACCACTCGGAGTTTTAAATGGCGGACTGACAGTATTCACACTGTTTTCAAAAGAATATTTTACTAATTGTTTATTAGGTCCAATTGCAGGAACTGAAACCGATTGTTCACTGAATAAAGGTGTTTCTCTGATTTCATAACCCATCAGTTTTGCTTCGCTTTCAAATCCGTTTTTGTTTGCAAGGAATGAAAAGTCATTCGCCTGATTATAAATTCTGTCTTTTGTGGTTGCAGATTGTTTAACCTGCATCGAAAGTCGTTCTACAACAAATTTATAATTAATTCTGTCAGTTACCTTAATGATATGATAGCCATAGGAAGTCTTAACCGGTTTCTGTATTTCTCCGACTTTTCCGTTAAATACCGCATCTTCAAATTCTTTAACCATCATACCTTTTGTAAAAAATCCTAAATCTCCGCCGTTCTTACCGCTTCCCGGATCAGCAGAAAATTCTTTGGCAAGCTTTCCAAAATCTTCACCTGCAATTAATCTCTGATAAATTTTATTTGCTTCTTCGAGGTTCTTTTCATCACTTCCCTTCTGATTAATTAAAATGTGGGATGCTCTTGCGAAAGTTTCAGTGCTGGGTACTTTACCAAAAAATTTATAAATAGTAAAACCCTGTGGTGCTGCTACAGGTCCGATTACATCACCTGGATTTGCAGAACTGATTAGCTTAAGAGCTTCCGGAGTAAAGTATTGAACTGATAGAGTATCACGGGAATATGGAATTTCAGAATAGATATCAACCATTTCTTTAAAGTCTGCACCTTCTTCTTTAATCTTTCTCAAAATATTCTGAAGATTCTTTAAGACAAGATTAGTATCATCAGCAGAAGGAACATTCGGGAATAAAACAAACTGTAATTTTCGCTGCGGAGGTTGTTTATAGAGATTTATATTTTTATCGAAATAGGATTTTAAATCAGCATCAGTAACCTGAATTTCGGATTCCGGAACACTGTTCACATCAAACAAAACATAATCAGCTTCCATCGAGATGTTCTGATCGATAAACTTCTGTTTAACCTCATCCTCTGTAACAACAATACCAGCTAAAAGATAACTTTGAAGTTTCTGAGTTAATCTCTGCTGTCTTACGAATTCTTCCGCCTGAACCAGAGCTTCTTTATTTCTTGGGTCAAATAATGCCTGTTCATAAAGCTGACGATTAAAGTTCCCAAGTGAATCAACAAAATTTTGTTTCAGAAAATCAGGTGGATTTTCTCCAAGAATAATTTCTTTTATTTCTTCATCGGATACTGTAATTCCAAATTTCTGAACTGCCTGTTCAATCAAAACCTGATTTACGATTGATTCCCAAACCTGCTCACGGATTTGATCCATCTGACTTTCATCAATATCCTGACCTGTCTGCTGTTTTAAATTTTCGAGTTGACGATCAAGTGCAGTCTGGAATTCCTGATAAGTAATTTCTTTTCCATTAACTTTCCCGATATAATTTGTCTTTCCGCCAAGAGCTTCAAGAACATTTGAATCAGAAATAACCATAAATAAAACAAAAAGAGCACCTACTGTAATTATGAATGCAGGAGCTAAACTACGCATTCTCTCCATCATTGGCATAGTGAGATAATCTCCGAAATTTGTTAAAGTCTTTAATTTTAAGTGGCTAAAAATAGACTATAAGCTCTAAAAAAACAATTAAATGACACTCTGGAAAATTCAAACCCATTAAATTCCTTACGGCTACAAAATATTTGATTTTCAGCTAATTCAAGACTAATTTTTAATAAACAATTTTGAGGTTAAGTGCGTGAATACAACAAATATCGACTTTCTTAAGAACATACCTCTTTTTTCTGATTTGGACGACGATACCCTCCAAAAAATTTATAAATCGGGATTATTGCAGAACTTCAGAAAAAACTCCGTTATTCTTTCGGAAGAAGATGCCGGAAGTGCAATGTTCTTTATTGTTGAAGGTAAAGTTAAAGTTTCCCGCTCAAGTGGCGATGGAAAAGAAGTTATTCTTGCAATCCTGAATGAATCCGATTTTTTTGGAGAGATGGCAATACTGGACGGTATGACCCGTTCTGCTACTGTTACTGCTGTTGAAGATTCAAAACTTTTTATTATTCAAAGAGCTGAATTTCTTGAACTACTTAAAAATTATCCCGAAGTTTCAATTGCTTTACTTCAGGAACTTTCAAGAAGACTGCGTGCTGCAACCATGAAAATCAAAGCACTTTCATTAAAAGATGCTGAAGGAAAAGTAGCAACGGTTCTTCTTCAGATTGCTGATGAAGTAGGGAAAATTCGTCAGGGAATTGTTGAAATCGAAGACCTTCCCTATCAGCAGGAACTTGCTAATATGGCAGGAACTTCACGCGAAACTATTTCAAGAACACTTCACTCTTTTGCTAAAAAAGGAATGATTGAATTAGAGGGATCAAAAGTAAAAATTCTCGACTACGAAAAGTTTAAAGAACTCTATGGTCAATAGAATCTGATGAGAAAAGCTGATTTACATATGCACACAAAACATTCAGATGGAGCGCATTCCACTGAAGAAGTTATTCTGATGGCAAAAGAACGTGGTCTTGAAATTATCAGCATAACCGATCACGATAATATTTCTGCAATAAAAGAAGCAATTGAGATTGGCAGGTTCTATGGAATTGAAGTAATCCCGGGTTTGGAAATCAGTTCTGATATTCGTGATCAGGAAGTGCACATACTTGCATATTTTTTTGACCCTGATAGTAAGGAGCTTGAGGAATATTTGAAATTTTTCAGATCGGAAAGAGTGAAGCGTGCCTCAAGGATTGTTGAAAAGTTAAACTTACTTGGATTTGAAATAACAATTGAAGATGTTCTTGAGAAAGCCGGTGATTCGGCGGTTGGAAGACCTCACATCGCTCAGGCAATGGTGCAGCGACAGATTGTTTCAAATTACTATGAAGCATTTTATAAGTTCATTGGTAACGGTTGTCCTGCTTACGAAAAGAAAATTCATCTTTCTCCTAAAAGTGCTTTCAAAATAATTAATGATGCCGGTGGATTATCATTTATTGCTCATCCAAACAATATGCCCGATGTAATTTTGAAAGAATTAATTGAAGATGGTGTTGATGGAATTGAAGTAATCCATCCTTCACATCTTCCCAATCAGGTAAAACATTTCAGAGGAATTGTCGGAGAATTTTTCTTACTCGAAAGTGGTGGCTCTGATTTTCACGGCGGTGACAGAAATGATTATTCAAATTTCGGAAAGTACTATACTTCTTCACTCAAAGTTGATGCAATGAAAAATTATTTATTAAGGAACACAGCTTAACAATGAAAATCATAGAAGGTAAATACTCAGCTGCAGGAAAAAAGTTTGCAATAATTTTAAGTCGCTTTAATGAATACATTGGCGAAAGTTTATTAAAAGGTGCAATTGATTGCTTTGAAAAACACGGTGTAAGTCAGGATAGTATTGATGTTATTAAAGTTCCTGGTGCATTCGAAATACCAGTCACAGCAGATAAACTTGCATCGTCAAAAAAATACTCAGCAATTGTTTGCCTTGGTGTTGTTATCCGAGGAGCAACTCCACATTTTGAATATGTTGCTTCAACAGCTAGTAATGGAATCGCTCAGGTGAGCCTCAAACATTCTTTACCGGTTATCTTTGGTGTTCTGACAACAGATACAATTGAACAGGCAATTGAAAGAGCAGGAACCAAAGCCGGTAATAAAGGTTGGGACGCTGCGTTAACAGCACTCGAAATGTCTGATTTATTCAAACAAATTTAGGGCAAATTTTATCGCTTCAATTCTTTACCTTCTATAGTAATTTTGAAAAACAAAATACGGATTCGAATCGCACCTGTTTACTGCTCTAAAAAATTAAGGAAACAATAATGAAAAAATTATTTTTTTCACTTGTCGTATTTTATTCTGTCCAAATTTTCCCACAGATTTTTACCGACTGGAAAAATTACTCGGATATGAAAAGCATTAAAAGTGTCGTTACTTCAGGCAACGAACTTTGGGCAGCATCATCAGGTGGAGTATTTAATTATAATTTTTCATCTGACCAGTATAAAACATTTGGCAAAGCAGAAGGACTATTTGGAACCAATGTTAATGCTATAGCGATTGATAACTATGGTAAAATCTGGTTCGGAAGCTCAACCGGTTTGATTGATGTTTATGATCCTTCAAATAATTCTTTCAGCACCATAAGAGACATTTTTAATTCCGACAGAGCTAATAAAGGAATAAATAGTTTTACAGTTAAAGGCGATACAATTTTTGTTGCAACGGATTTTGGTATATCACTGATTGATTCAAAATCATTTTTCTTCTACGATACTTATTTCAAATTCGGAACATTTCCATCTAACATTAAAGTAAATAAAATTTTTCTCAGCAATCTTATTTACGCTGCAACTGAATCCGGTGTAGCAATACAAAAGCAAGGTTCAACCAATCTGTCAGCACCGGAGTCCTGGAATGTTTATAACACAAATAATGGTTTACCTTCAATTCGTATTTCTGATGTCACCATTTTTGAAGAAAATGTTTTGGCATCATCAGACAAAGGTATTTATGTTTTTGACTCAGCAAACTCTGTGTGGAGTTCTTTCATTCCTTCATTGAATAGCACAGCAATAATAAATATGTTCGTTGCACATAATAAACTTTACTGTATATCTTCTAACAGGTTATACGAATACTCAAATTCAAATCTGAATGAATTATTTAATTCAGCTTCGGCTTTAAGAAATCTTTTCTACTCTGATAACTTCGGAATAATACTCTCGACATCTGATGGTGTTTTAACATTAAATGATAACAAATTTTATTTTCCAAACGGACCTGCTGCAAATCAGTTTCCTCAATTATCTGTTGATCTAAATAGTGCACTTTGGTCTTCAACTGGAAACGATGCTACCGGAAAAGGAATTCTAAAGTTTGACGGAAACCTGTGGACTGTTTACTCAGTTTCAGATTATCCTGAACTTCTTACAAACTCTTTCTTTTCAATTTATTGCGCACCCGATGGTAAAATTTATTCGGGAAATTGGGGAAAAGGTTTTGTAAGAATTGATGGAAACAGTATTACCAGATTCGATGCATCAAATTCACCGATGGTTGGAATTCCCGGTGATGGAAACTTCATTGTAATTACAGCACTTGGCTATGATTCAAGAAATAATTTATGGGCACTGAATTTTGATGCTGCAGACCGAAACAATCTAGCAATGCTCACACCGGATAATTTGTGGTATGTATTTCAGATTCCCGCACAGCAAGGAAGAGTGGTTTCACAAAATAAAAATCTTGTAATTGATCAGTACGATACAAAGTGGTTTAATGCTGATAATGGAACCAAAGGTCTTTATTACTTTAATGAAAATAAAACTTTCACTAATCCTTCAGATGACAAAAGCGGATTGCTAACAGAATCAAACGGACTGAACAGTGTAGATATTTCAGCAATCAAAGTTGATCGACGAGGTGATGTCTGGGTTGGAACAAGCAGAGGTTTAAATATCATTACCAACACTTCATCAATTATAAATTCTGCCAATCCACAGTTAAGAATCACATCTGTATTTGCATTAAGGCAACAGGTTATTACTGCCATCGCTGTTGATCCGCTTAATCAAAAGTGGATTGGGACAAACGAAGGTCTTATTCTTGTCAGCAGCGATGGTCTTAGAGTAATTGCAAATCTTAATTCTAAAAATTCACCGCTACTTGACGACAGAATTGAAAGTCTTGCAATAGATGAAAAAACCGGAAAAGTTTTCGTTGGAACTAAATTCGGATTAAATACATTTGAAACTCCGGCAATTAAACCTGTTGATAGCTTCTCAGGTTTATTTGTTTATCCAAGTCCTTTTATAATCTCAGATGGAAGTCAGTTATTAACTATTGATGGACTTATCAGAGACAGTGAAATAAAAATTTTAACGGTTGCCGGAAAGCTTATCAGAAAACTTGAAACACCAGGCGGAAGAGTTGCTTTTTGGGACGGCAGAGATGATGATGGAAATCTCGTCAATTCGGGTATTTATGTAGTAGTTGCATCCGACAGAGAAGCAAACAGTGTTGAAACCGGAAAGATTGCAGTGATCAGAAAATAGTTTTATGATCGATCTGATTAATGTTTCACTTCAGTTTAATGGTAAATATCTTTTTAAGGATGTTAATTACAGAATTTCATCCGGAGATAAAATCTCTTTGGTCGGTGCTAACGGAACCGGTAAGTCTTCTCTTCTGAAAATTATAACCGGAGAAATTGAACCTGAGAGTGGAACCGTTCAAAGGCAAAAGAATATTTCGATTGGTTACCTTCCACAGGAAAATGTAACTCACGCAAACAAAACTTTACTTGAAGAAGCTACTTCAGCACTCAGCAATATTATCAAGCTTCAGGAAAAGGAAAAAGAACTTCAATCTGAACTTTCAAAAGAGAATTTAACTGAGCAGGAACGAGATGATTTAATTCATCAGCTTGGTGAAGTTCATTTAAGACTAGTAGAACTTGGTTCATATTCTGCTAATGCTAAAGTTGAGAAAATCCTTAAAGGTCTTGGATTTGAAGAAGAAGATTTTGATCGTCCGACACAAACTTTTTCCGGTGGTTGGCAAATGAGAATCGCTCTTGCAAAAATTCTTATTTCACAAAATGATATTCTTCTGCTCGATGAACCTACAAATCATCTCGATATTGATTCTCTTAACTGGTTAATCAGTTTTCTTAAATCCTATCGTGGTGCACTTATGGTTGTTTCGCACGATAAAAATTTTGTTAATCAGGTTACAGATAAGACTCTCGAAATATATCTTGGAAAATTTTATACATTCAAAGGCGATTATGATTCTTATCTGAAGTACAAAGAAGAAAGAGATGCACAAACAATTCATCAGTATGAACTTCAGCAAAAAAAGATTAAAGAGACTGAAAGATTTATTGAGCGTTTCCGTTATAAAGCTACAAAAGCAAGACAGGTTCAAAGCAGAATCAAGCAGCTTGAAAAACTTGAGCTTGTTGAATTACCGGATTCAAAAAATGAAATTGATATAAGATTTCCAACTCCACCTCAGAGCGGAAGAATTCCAATTCAGTTAATCGGAATCAGAAAAAGTTATGGCGATAAACTTGTTTTGAATAACATTGATTTAACTATTGAGCGCAGAGATAAAATTGCTTTTGTCGGTCCGAATGGAGCAGGCAAAACAACATTAGCGAAAATTATAGCAGGTGTTCTGCAACAGGATTCTGGCGAAAGAATAGTTGGCCATAATACTTTCATTTCTTACTATGCACAGGATGTTGCAGATAATCTTAATCCTGAACTTGATATTCTTGACTCGGTTTATGGAATCAATGAAGAGAAAACGGTTGGTGAACTTCGTTCTTTGCTTGGTTCTTTCTTATTCACCGGTGATGATGTATTCAAAAAAGTGGGCGTGCTTTCGGGTGGAGAAAAAAGTCGTGTTGCTCTCTGCAAAATTCTTCTTACAAAAGCTAATCTTATCATTCTCGATGAGCCGACAAACCACCTTGATATTAATTCAAAGCGAATACTTCAGAAAGCATTAGTTGATTTCAATGGTTCGCTTGTTATTGTATCTCACGATGTTGATTTTCTCAGACCGATAATTAATAAAGTTTTGGATATTCGAAAGTCTGGTTTGAAGATGTATCCTGGTGATATTAATTACTATCTTTATAAAAGAAAAGAATTAGTCGAAGTGAGTATTCCAGAGTCAGATAAATATGAAACATCTTCACAAAGAAATCAAACAAATGATAATATTTCCCGCAAAGAACAGAAACGACTGGAAGCTGAGCTAAGGCAGAAAAAATATCAGGCAACAAAAGATCTGACAAAAGAAATCGAGAAACTCGAAAAGCAAATCAGTTTGCTTGAAGATGAACAAAAAGCAATACAGGATAAACTTGCTGATCCTTCATTTTATTCCGATGCAGAAAAAGTTAAAAACACCAATAAAAGATTCAAAGAAGTTGAAAAAGAATTAGAAGAGTTAATGATTCAATGGGAATCAAAAACCGAAGAGCTTAATAATATTCTTAATCAATTCAATTAAATATCGGAAAAGAAAAAATTTTCTTCCCTTATCAAACAGCAATACCTAAAAATTCTTTCGTAAGTGCAATTCCACCATAAATTGCAGCATCATCACCAAGTTTTGATTGAACGATTTTCAGATTTTTAGAAGAATCATACAAAGCGTGTTTATAAAACTCTTCTTCAATTAACGGGAGATAAAATTTCCCAACTGCTTCTATCACACCGCCGCCTAAAACAATCATATCAAAATTCATAAGATTCTGAATGCCTGAAAGAACCTGTCCTGTAATTTGAGCCGCTTCTTTCATTCTGTTAATCACAACCTTATCACCCTTCAGGACAGCATTTAACAAAGCTTTACTCTTAATTCTTTCATTAGCTTTGATTTGTTTTTCGAGCAAACTTTTTTTCTTTTCTTTCTTAACATCCTTGATAATATTATTGACAATTGCCGTTCTGCTTGCAAGAGCTTCGAAACAACCTTTTCTTCCGCAACCGCATTTAGGTCCGTTTTTATCAACAAGCATATGTCCGATTTCACCAGCGACAAAGTTTGAACCTCTGTAAATTTCTCCGTTAATAATAACACCTCCACCTATTCCTGTTCCGATGAAAACTGCTAAAAGATTTTTAACATTCTTCCCTACTCCAAAATGTTTAATTCCAAGCGCACCAAGATTCACATCATTTTCAATTAAGACTTTATATGGAAGAATTTTTTCCAAACGATTTTTAATATTAAAATTTTTTATTCCGAGATTGGGTGCAATTCCAATATGACCGGTATAAGGATTAACAGAACCAGGAACTCCGAGACAAACTGAAACTATCTGAGAGTTGGATAAACCTACATCATCAACAAGTGTTTTAACAAGCGAGGCAATATCTTTTACATAATCGTTTGGGGTTTTATCAAGGTCAGTTGAAATTTTTGCCCGTGAGATGATTCCCTTGTTTGAATTGATAACTGAAGCGAGCATTTTTGTTCCACCCATATCAACACTTATGATATATTTATTTTCCACTTTTATCTCCTGATTTTTTACAAGATTTGCATCGAAAAACTATTACATATTTCACTATAATACAATTATTCATCAATATGATTTTTGTAACTTTGAATAATTAATTTCAGATTATAAGTGGTTAAACCAATAAAAAGATTCGGACAGAATTTTCTTAAAGACAATAATATTCTCAGGAAAATTACTGAAGTAATAAATCCTCAAAAGAATGATAAGATTATTGAGATTGGTCCCGGCGAAGGTGCACTAACAAAACTCCTGTCAAACAGTGGCGCTGATGTTACAGCAATTGAGATTGATAAACGCGTCATTGAACATCTAAAGGAAACATATCCAGAAGTAAAAATAATAAATAAGGATTTCCTCGAAATTGATTTAACTCAGTTTGGATCTTCTGATTTACGGATTGTTGGAAATATTCCTTACAACATAACTTCATCAATAATATTTAAACTGATTGAAAACTATAATCTCATCCGTGATGCTGTGTTTATGGTTCAATATGAAGTAGCAAAAAGAATGACTGCTAAGAAAGGCACTAAGGATTATGGAATACTTTCAGTTCTTCTGAATTACTTTTCAGAGACTGAATTTTGCTTCAAGGTTTCTCCAAATGTTTTTTATCCGAAGCCAAAAGTGTTTTCTGCCGTTGTCAAAATAAAATTCAAAAAGAATACTGATGAAGCACTTAACAAAGTATTCATTCAGATAGTTAAAGCAGCATTTGGCAACAGAAGAAAAACCCTAAAAAATTCACTCTCTAACAGTATATTTGCACAATTAAATTTCAGCGGGTGCGGTGTTGATTTATCTCTTCGCGCTGAGCAGCTTGATTTACCAGACTTCATTAAGCTTGCCGAATTTGCCCGCGAAAATTTTTCTTATCAATAAACCAGGTTTTAATGGATAAAGCAAAGCGACTTATTAAAAAGTTAAAAGCATTCGATGTTGTTGTGGTAGTTTTCTATCTTATCCTTTCATTGCTTCATATAATTTTTTTTGACAGGATTGAGTATTCAACTGCGTGGATACTAATCAATATTTCAATAATTGGTTTTGCATTTCTTATATCTTACCTTGAATCTATCAGCGATAGTAAAATCTGGTACATAATACATTACTGGTACATTGCACCAATTATTCTAATCACTTTTAAGCAACTCTGGTATATGGTTAAGCCAATCCGCGGAGTTGATTACGATTGGTTGTTTATTCAGATTGACAGATGGATGTTTGGTACTGATCCAACACATTTGGTTTATCAGATTTCTAATCCGGTTTTAACAGAAATTCTGCAAATCGTTTATGGAATGTTTTATCTGTTACCGATAATTCTTGGACTGTCTTTACTGAAGGAGAAGAGATTTGTTGCACTTGACTTTGCAGTGTTCTCTGTCGTTTATGGATTCTTTCTCTCTTACCTCGGATACTTTACACTTCCGGGCATCGGTCCAAGATTTACTTTGCACGACTTCTCAACTTTAAATGAACAGCTGCCTGGATTATTTCTCACAAATTTTCTCAGAGAAATTGTAAATACAGGCGAAAGCATTCCATCAGGCACTCCAAATCCTGCTGAAGTTGTCCAACGTGATGTTTTCCCAAGCGGACACACAATGATAACTTTAATTGTAATGTATCTTTCAATAAGACTAAAATCAAAAACAAGATATTTTCTTTCCACCGTTGGAACTTTATTGATATTCTCAACGGTTTATCTCTGGTATCATTATGTAATTGATTTGATTGGTGGCGCTGTGTTTATGGTTTTTGCAATGTGGAGTGGTAAATACATTTTCAATTGGTGGAGAAAAAAGATTGGTAAAGAAGAATTTGAATATGGGAAGTATTGAAAAGTTTAAGTTAAAGTTTGAGATTTTGGGTGAATGAATCGGAATTAATCCGCTTAATCTGCGTGATCTGTGTTCTGTTAAAAATTAAATATCACATTGAATGTCAACTGAAAAAAAACATAAAGTAAAAAACATATTCGATGACATATCGGGCAAATATGATCTACTGAATCATCTGCTCAGTTTTGGAATTGATAAGCGCTGGCGAAAAAAAGCTTTGAAGCTAAGCGGATTAAACAAAGATTCAGTACTTCTTGATGTCGCTTGCGGAACAGGTGATGTTGCAATCGAAGCAAAAAAGTTCGGTGTTGAAAAAATAGTTGGTGCAGATTTTTCACATAATATGCTTTCGTTATTCAATAAAAAAAGTAAATGGATAATTGGAAATAATGTTCAGATGGTCGCAGAACAAATGCCCTTTAAAGACAATGCATTTACAAATATTACTGTAGCATTTGGAGTAAGAAATTTTTATGATATTCAACAAGGTTTTAATTCATTTTACAGAGTTCTTAAACAGGGTGGTAAAGCAACAATAATTGAATTTAAAATGCCGAAGAACAAACTTTTTGCTGCTTTATATAAATTTTATTTTAAGAGAATTCTTCCGACAATTGGTGGATTCATTTCGGGAAATAAATCTGCATATACTTATCTGCCTGAATCAGTTGAAGAGTTTGATGTGAAAGTAGATTTAATTAAACTTTTGCAAAATTCCGGTTTCAGAAAAATTGAAGTCTACAACTTTACATTCGGAATTGTTCAAACTATAATCGCTGAAAAGTAATCAGGGAATAAAATAATTTCTTAATTCTTCCAGCATATAAGTTGATGTTAAAGATAAATCTAATCTTCCTCCTCTTATTAGATTAATAACAAATGATTCACCTTCCCATTTAACGAATCCGATATTTTCAGCAATATAACCATAAGCATAAAAGCTTTCTGACGCACCTTGCGGATCAAGTTGAACTTCCACCTTATATTCAATTTTAAAGACATCGATTGTGTACTGTGAATCGCGGATAGCCATGGTCAATTGCTCTTTACCTGAAATTTTAGCATTAGTTTTAACCGGAGAAAATACAGGAATTCCCCCAACAGTAATGTCAATCTGATAAACAGGCCAGGTTTGATTTAGCCGTAAAGGAAAGAATAGCAATCTTGATTCATTATCAATTCGCAAAGCATTTCTTAAAGTATCAGGAATCAGTTGACCTAAACCTGTAGTATCAGTGTAATAAAATACTCCTGTATTACTTTTCCGGAAGTAAGCCGTATCTAATGTTAATGCACGCTCAATAATTATTGAATCAATCTGAATAAAATATTCCGTTCCGCTGATACTCTGCAAGCCGATAATATCAGAAATTTTTGCTCCGCTTAATACAAGATTACTGTCAATTGTCAGGCTGTATGTAAACTTAGCTCCTGTTTTTGCGGGAAAGTATTCTTTGTCCACAGCTGGTGGATCAACAATTACATTATCTTTACAAGAGTAAAGAACTATCAAAGACAAGATGATGAATAAATAATTATTATTCTTCATAAATGTCCTTCAAGTTTTTTATGTAATTTTCTGAAAGCCATTGAACGATGACTTATTTTATTTTTTTCTTCATGTGAAAGCTCACCAAAAGTCTTATCATATCCGTTTGGAATAAATAAAGGGTCATAACCAAATCCATTTTTGCCTCTGGGCTCAGTTATCACTCTTCCTTTTACTTCTCCGTAAGCAGTAATAAAAGTTTTCCCGTCATAATAACTAGCAACACAAACAAATTTTGCTCTGTGAGGTTCAGGAAATTTTTGAATTGCTTTTATTAACTTTTCATTGTTAAGAGAATCATCAGCACTTTCTCCGGCGTATCTTGCAGAATAAATTCCAGGTTCACCGTTCAGTTGTTCAACCACAAGACCTGAATCATCACCAATTGCCGGAATTCCGTATTTATCATAACAAGCTCTTGCTTTCAACTTTGCATTTTCCTCAAATGTTTTTCCTGTTTCTTCAACATCAGGTGAATTTTCAAAATCCAGAAATGAAATTATTTCGATATTCAGATCTTTGAAAATCTCTTTGATATCGTTCAATTTGCCTTTATTCTTTGTTGCAATTAAAATTTTTTTCACGCTACACTCGTCCTAAAAGTTTTTGCAATTCTGATTTAGCATTCTCTGTGATTTCATTTTCATCGTAAACCAAAGACTTAAATTCTTTCACCAGCCATTTTCCATCAACAATTACAGAGTGAATATTATTCATTCCGCTGGAATAAACAATGTCCGAATAAATACTGTTTTCATTTTCAACATAAGAATTATTAAATGAATTCAAATTGAGTAAAACTAAATCTGCTTTTTTACCAATCTCAATACTTCCGATTTCATTTTCGAGATGGAGAGCTTTTGCACCTTCGATTGTCGCAAGCTTGAATACTGTTTTTGCATCCATCACATCCGCACTATAGATAGGTTTTTGTATCAGAGCAGCCAATCGCATTTCTGTAATAGCACTTAAATTATTATTGCACGGAGCACCATCAGCACCAAGTGAGACAGAAATTCCTTCTTTTAAGTATCGCGGAATGTCAGCAATTCCTGATGCCAACTTTAAATTTGATGACGGACAATGAGCAACTCTCATTTTTGTTTGCTTCATTATTTCAATTTCATTTTCACTTGTATGAATGCAATGAGCAAAAACTGAATGATCATCAATTGTATTTATTGAATTGAAATACTCAATATTTTCCTTACCGTATTTTTTTCTGACTTCGGCAATTTCATTTTTATTTTCTGATGAGTGAGTATGATAAACAGCTCCTTCAAAATCGTTTTTCATCATAAAGGATTCTTTTAATAATTCTTCAGAACAGGAAAGAACAAATCTCGGTGCGAAACCATATTTTATTCTGTCCTCCGCTTGATTGTGAAAATCCTTTGCAAGTGAATATGTATATTCAATCTGTTCTTTTGTTGTTGATTTGAATTGTGGAAACAAATCATTTTGATCAATCAGACAATTTCCTGCAAATGCTCTGATGCCTGAGATAATTAATTCTTCAAAGATAACTTCCTGATGTCGCAAAGTTCCCATATCAAGAATTGTTGTAGTACCGCCACGAAGTAGTTCATTTATTCCAACTTTTACTGAAGCTCTTAATGAATTTTTATCGTGTGAATTCTCGTAGGGGAAAATTCTGTACTGCAACCAATCGAGTAGCTGTAAATCATCTGCAAGTCCTCTGAATAGCGTCTGACAAAGATGAATATGAGTTTGTACAAAACCTGGTATAAGAGTTAGTTCAGGAAAATGAAAAATTTCTCCCGGGTAGTTTTTTCGAACGAAGTTTTTTAGTTCGATAACAGAACTGATTTTTCCATCAATTATTTCAACAGCATGATTTGTAAGGATTGAATCGTTTTTATCGTTTGTAACAATGAACTTCGGAATAAGAAGATATTTCATTTTTTCTTTGGCAGATTGTTATTTAGAATAATATTTCACGCAAAGTCGCTAAGGCGCTAAGGAAATTATTTCAATATAATAGAATTCTGATTTAAGCTGTCATTTAATCTTTTGATTCTGAACTTTCTTCATAAACCTTTTCCATCATTTCAAATGCATATCTTAAATGCGGAATTACAATTGAGCCACCAACAATCAAAGCTATGTTGAATGTTTCAAGTAATTCTTCACGTATAGCACCTTCCTGAATTGAACGATCAATATGATAGAAAATACAATCGTTACATCTCAGTACCATTGATGCAACAAGTCCCATTAGTTCTTTGGTTTTTGCTGGCAAAGCTCCATCGAGATATGCTTTGTTATCCAGTGCAAAAAATTTATTGAAATCTTTAAAACCTGAGTTAAGAATTTTTTCATTCATCTCAGTTCTGTAAAGTCTGGTTTCACTTGTAGTTTTTTTCATAATGTTATTCATCCTTTTTATAAAATTTCTTTGTGTCTTAGAGTCTTAGTGGCAACTACTCTCAGTTTTGGGGAAGTCGTTTTCTGCCACGAAGACACCAAAGCACAAACTAAAAAAATTAAAGTTCATCCAAAAATTTATTCTTTTCCGGATCATAAGATACTTCTAACTTTTCCGGAGGCACATCTGATTCTTCATCTTCCCAATCATAATGTTTAATGGGATCAAATTTTCTAAAGACAAACGCTGCAATAATACCTGTTATAGCACCAAACAAATGTGATTCCCAGCTTATTCCTTCCAATCCGGGTAAAACACCCCAAACAAGTCCGCCATAAAGAAATACAACAATTAAAGATAAAGTAATTGATTTATTATCTCGTCTGAAAATCCCGCTAAAGAATAGATAAGAAACAAAAGCATAAACAATTCCGCTTGCACCTATATGATAAACTTCACGGGCGAAAATCCATACTAAAAGTCCGGTGCCAAAATAAACGAATGCAAAAACTTTATAAGCAGCCTTGGGATAAAAATAGAAAATTCCCAGGCCCATCACAGCTAACGGAATTGTATTTGAAATCAGATGGGAATAGTTTGAATGAATTAAAGGAGATGTAAAAACCCCAATTATTCCGGCCAGATGACGAGGAAAAACTCCAAGTTTGTATGGATAAATATTTAACAAATTAAAAATGAAATGAAGAATCCACAGCAAAAAAGGAAAAGAAAGTGGAATTAACACAAAATTTATTTTTGATAATAAGTTCTTCAA

Protein sequences of DBSCAN-SWA_2

>NC_017464|2659999:2688654|2672499_2674569_-|WP_168026842.1|DBSCAN-SWA
MRSLAPAFIITVGALFVLFMVISDSNVLEALGGKTNYIGKVNGKEITYQEFQTALDRQLENLKQQTGQDIDESQMDQIREQVWESIVNQVLIEQAVQKFGITVSDEEIKEIILGENPPDFLKQNFVDSLGNFNRQLYEQALFDPRNKEALVQAEEFVRQQRLTQKLQSYLLAGIVVTEDEVKQKFIDQNISMEADYVLFDVNSVPESEIQVTDADLKSYFDKNINLYKQPPQRKLQFVLFPNVPSADDTNLVLKNLQNILRKIKEEGADFKEMVDIYSEIPYSRDTLSVQYFTPEALKLISSANPGDVIGPVAAPQGFTIYKFFGKVPSTETFARASHILINQKGSDEKNLEEANKIYQRLIAGEDFGKLAKEFSADPGSGKNGGDLGFFTKGMMVKEFEDAVFNGKVGEIQKPVKTSYGYHIIKVTDRINYKFVVERLSMQVKQSATTKDRIYNQANDFSFLANKNGFESEAKLMGYEIRETPLFSEQSVSVPAIGPNKQLVKYSFENSVNTVSPPFKTPSGYVVVRIAEALGERFTPFDEVKVSMKPAVIREKKFEKLEKTAKEVYSKAGGDIYKIPQIRPDLTIQQTGPFTAQGTIPNLGRDYAFINKAQSLEVGKTTEPFKGMRGYYIMRLTKKTPFDKDTYSAQAATIKMQLLNEKKARFINEWLEQMKKDAKIVDNRFMFFGY
>NC_017464|2659999:2688654|2687997_2688654_-|WP_041294154.1|protease|DBSCAN-SWA
MKNLLSKINFVLIPLSFPFLLWILHFIFNLLNIYPYKLGVFPRHLAGIIGVFTSPLIHSNYSHLISNTIPLAVMGLGIFYFYPKAAYKVFAFVYFGTGLLVWIFAREVYHIGASGIVYAFVSYLFFSGIFRRDNKSITLSLIVVFLYGGLVWGVLPGLEGISWESHLFGAITGIIAAFVFRKFDPIKHYDWEDEESDVPPEKLEVSYDPEKNKFLDEL
>NC_017464|2659999:2688654|2667202_2668972_-|WP_014561186.1|DBSCAN-SWA
MRLKFVCCLLFVVSGFLFSQNRSETREEKLEQLTKRTDIKVTEVEKDILRLEYPSGKVLYKNIGDYVPINERNITYSPTFDSTIIDLTTIDTSLYYHKYSFWQEVPISNLQFDYLRIDDVNNNGKPELYGARKYFSSSDLPEPVTVYELNNSEIFYEIFQYDTVVHIQNIYDVNRDGKEEVHFTPSILTPNEQRFYSKPTDTTLATNLDFVFNPDLPYQLDDPTLGNFDGDQQTDLVFDKASNVYIFEYNHIINNFDSVYHFQVPDPIDLGIGGYSVGDFDLDGKTDIVFSTVRGKVFVIENEGNNQYNDVWQGSVESNNAYVHTWTNDIDRNGKPEFWVLADAYYNGIGTTRITIFETNGDNSYQAVGRIDLVGIMSFYAGNMQAIDIDNDGTEEIAVCIDDNFIILEFNGRENHHTYEVYYIKKNELNTEEEYQVYMGAIMYNLQSTSKYAILISMYHTKEVQPNLFNTRYVTKIYKPDSTTSINGDEIKPIRLKILQNYPNPFNPSTTVKFELNQMSIVSIKVFNILGKEVTTLLNKELSPGIYTINWEAKDSNGQLLPSGVYLIKLSANNETGNYTRTIKSLLLK
>NC_017464|2659999:2688654|2685486_2686074_-|WP_014561200.1|DBSCAN-SWA
MKKILIATKNKGKLNDIKEIFKDLNIEIISFLDFENSPDVEETGKTFEENAKLKARACYDKYGIPAIGDDSGLVVEQLNGEPGIYSARYAGESADDSLNNEKLIKAIQKFPEPHRAKFVCVASYYDGKTFITAYGEVKGRVITEPRGKNGFGYDPLFIPNGYDKTFGELSHEEKNKISHRSMAFRKLHKKLEGHL
>NC_017464|2659999:2688654|2676872_2679107_+|WP_014561193.1|DBSCAN-SWA
MKKLFFSLVVFYSVQIFPQIFTDWKNYSDMKSIKSVVTSGNELWAASSGGVFNYNFSSDQYKTFGKAEGLFGTNVNAIAIDNYGKIWFGSSTGLIDVYDPSNNSFSTIRDIFNSDRANKGINSFTVKGDTIFVATDFGISLIDSKSFFFYDTYFKFGTFPSNIKVNKIFLSNLIYAATESGVAIQKQGSTNLSAPESWNVYNTNNGLPSIRISDVTIFEENVLASSDKGIYVFDSANSVWSSFIPSLNSTAIINMFVAHNKLYCISSNRLYEYSNSNLNELFNSASALRNLFYSDNFGIILSTSDGVLTLNDNKFYFPNGPAANQFPQLSVDLNSALWSSTGNDATGKGILKFDGNLWTVYSVSDYPELLTNSFFSIYCAPDGKIYSGNWGKGFVRIDGNSITRFDASNSPMVGIPGDGNFIVITALGYDSRNNLWALNFDAADRNNLAMLTPDNLWYVFQIPAQQGRVVSQNKNLVIDQYDTKWFNADNGTKGLYYFNENKTFTNPSDDKSGLLTESNGLNSVDISAIKVDRRGDVWVGTSRGLNIITNTSSIINSANPQLRITSVFALRQQVITAIAVDPLNQKWIGTNEGLILVSSDGLRVIANLNSKNSPLLDDRIESLAIDEKTGKVFVGTKFGLNTFETPAIKPVDSFSGLFVYPSPFIISDGSQLLTIDGLIRDSEIKILTVAGKLIRKLETPGGRVAFWDGRDDDGNLVNSGIYVVVASDREANSVETGKIAVIRK
>NC_017464|2659999:2688654|2684728_2685490_-|WP_014561199.1|DBSCAN-SWA
MKNNNYLFIILSLIVLYSCKDNVIVDPPAVDKEYFPAKTGAKFTYSLTIDSNLVLSGAKISDIIGLQSISGTEYFIQIDSIIIERALTLDTAYFRKSNTGVFYYTDTTGLGQLIPDTLRNALRIDNESRLLFFPLRLNQTWPVYQIDITVGGIPVFSPVKTNAKISGKEQLTMAIRDSQYTIDVFKIEYKVEVQLDPQGASESFYAYGYIAENIGFVKWEGESFVINLIRGGRLDLSLTSTYMLEELRNYFIP
>NC_017464|2659999:2688654|2670022_2671009_-|WP_041294403.1|integrase|DBSCAN-SWA
MFSATVLPQQKQVKQKLLDQVRNELRVNHYSKKTEEAYIGWIKRFILFHNKRHPIDMGAGEIKSFVDNLVTNYLVSSATQNQALQGILFLYKNILKKDVGWIENIKRSTRVKHLPVVLSKREVAKVFDNLEGTNKLIVSLLYGSGLRLSEALKLRIKDIDFDYKQILVRDGKGEKDRHTILPDSVIPELKKHLNNVYKQHKGDLAKGKGETILPYALSKKYPNAAKEFGWQYVFPADKFIKDKDSGLVTRWHIHESTVQRAVKDAVKKSGITKPASPHTFRHSFATHLLENGYDIRTIQELLGHSSVKTTMIYTHVLNRGLGVKSPLD
>NC_017464|2659999:2688654|2681110_2682088_-|WP_014561195.1|DBSCAN-SWA
MENKYIISVDMGGTKMLASVINSNKGIISRAKISTDLDKTPNDYVKDIASLVKTLVDDVGLSNSQIVSVCLGVPGSVNPYTGHIGIAPNLGIKNFNIKNRLEKILPYKVLIENDVNLGALGIKHFGVGKNVKNLLAVFIGTGIGGGVIINGEIYRGSNFVAGEIGHMLVDKNGPKCGCGRKGCFEALASRTAIVNNIIKDVKKEKKKSLLEKQIKANERIKSKALLNAVLKGDKVVINRMKEAAQITGQVLSGIQNLMNFDMIVLGGGVIEAVGKFYLPLIEEEFYKHALYDSSKNLKIVQSKLGDDAAIYGGIALTKEFLGIAV
>NC_017464|2659999:2688654|2665711_2666017_-|WP_014559436.1|transposase|DBSCAN-SWA
MKNEKRKFTAEFKVQVLREHLENQVSVAKICEQYNINPNLFYLWKKELFAGALERFSNKKNSNTDQVKLSKLEEKLKDKDSLISEIVEDNLRLKKKLNGGY
>NC_017464|2659999:2688654|2663086_2663647_-|WP_014561183.1|DBSCAN-SWA
MKQILLVLIVALLNTQFLLGQINLIGSTDYSNFENNAEIDNNLRGIFLFSSIGILDFLSLGIGYQVSEKISIAIKGSQTFIGSSAMGFPHGGNGVGIKISYHTPFLFFNTTSLEYISYLSTSFDDHINSITKGNYFDFNLGREIIDESGFNFFWAIGFCVSAAKEANVLYTPSLKIGLNFNFIEKE
>NC_017464|2659999:2688654|2682205_2682979_+|WP_014561196.1|DBSCAN-SWA
MVKPIKRFGQNFLKDNNILRKITEVINPQKNDKIIEIGPGEGALTKLLSNSGADVTAIEIDKRVIEHLKETYPEVKIINKDFLEIDLTQFGSSDLRIVGNIPYNITSSIIFKLIENYNLIRDAVFMVQYEVAKRMTAKKGTKDYGILSVLLNYFSETEFCFKVSPNVFYPKPKVFSAVVKIKFKKNTDEALNKVFIQIVKAAFGNRRKTLKNSLSNSIFAQLNFSGCGVDLSLRAEQLDLPDFIKLAEFARENFSYQ
>NC_017464|2659999:2688654|2687516_2687879_-|WP_014561202.1|DBSCAN-SWA
MKKTTSETRLYRTEMNEKILNSGFKDFNKFFALDNKAYLDGALPAKTKELMGLVASMVLRCNDCIFYHIDRSIQEGAIREELLETFNIALIVGGSIVIPHLRYAFEMMEKVYEESSESKD
>NC_017464|2659999:2688654|2682990_2683941_+|WP_014561197.1|DBSCAN-SWA
MDKAKRLIKKLKAFDVVVVVFYLILSLLHIIFFDRIEYSTAWILINISIIGFAFLISYLESISDSKIWYIIHYWYIAPIILITFKQLWYMVKPIRGVDYDWLFIQIDRWMFGTDPTHLVYQISNPVLTEILQIVYGMFYLLPIILGLSLLKEKRFVALDFAVFSVVYGFFLSYLGYFTLPGIGPRFTLHDFSTLNEQLPGLFLTNFLREIVNTGESIPSGTPNPAEVVQRDVFPSGHTMITLIVMYLSIRLKSKTRYFLSTVGTLLIFSTVYLWYHYVIDLIGGAVFMVFAMWSGKYIFNWWRKKIGKEEFEYGKY
>NC_017464|2659999:2688654|2675473_2676301_+|WP_014561191.1|DBSCAN-SWA
MRKADLHMHTKHSDGAHSTEEVILMAKERGLEIISITDHDNISAIKEAIEIGRFYGIEVIPGLEISSDIRDQEVHILAYFFDPDSKELEEYLKFFRSERVKRASRIVEKLNLLGFEITIEDVLEKAGDSAVGRPHIAQAMVQRQIVSNYYEAFYKFIGNGCPAYEKKIHLSPKSAFKIINDAGGLSFIAHPNNMPDVILKELIEDGVDGIEVIHPSHLPNQVKHFRGIVGEFFLLESGGSDFHGGDRNDYSNFGKYYTSSLKVDAMKNYLLRNTA
>NC_017464|2659999:2688654|2684041_2684728_+|WP_014561198.1|DBSCAN-SWA
MSTEKKHKVKNIFDDISGKYDLLNHLLSFGIDKRWRKKALKLSGLNKDSVLLDVACGTGDVAIEAKKFGVEKIVGADFSHNMLSLFNKKSKWIIGNNVQMVAEQMPFKDNAFTNITVAFGVRNFYDIQQGFNSFYRVLKQGGKATIIEFKMPKNKLFAALYKFYFKRILPTIGGFISGNKSAYTYLPESVEEFDVKVDLIKLLQNSGFRKIEVYNFTFGIVQTIIAEK
>NC_017464|2659999:2688654|2679111_2681079_+|WP_014561194.1|DBSCAN-SWA
MIDLINVSLQFNGKYLFKDVNYRISSGDKISLVGANGTGKSSLLKIITGEIEPESGTVQRQKNISIGYLPQENVTHANKTLLEEATSALSNIIKLQEKEKELQSELSKENLTEQERDDLIHQLGEVHLRLVELGSYSANAKVEKILKGLGFEEEDFDRPTQTFSGGWQMRIALAKILISQNDILLLDEPTNHLDIDSLNWLISFLKSYRGALMVVSHDKNFVNQVTDKTLEIYLGKFYTFKGDYDSYLKYKEERDAQTIHQYELQQKKIKETERFIERFRYKATKARQVQSRIKQLEKLELVELPDSKNEIDIRFPTPPQSGRIPIQLIGIRKSYGDKLVLNNIDLTIERRDKIAFVGPNGAGKTTLAKIIAGVLQQDSGERIVGHNTFISYYAQDVADNLNPELDILDSVYGINEEKTVGELRSLLGSFLFTGDDVFKKVGVLSGGEKSRVALCKILLTKANLIILDEPTNHLDINSKRILQKALVDFNGSLVIVSHDVDFLRPIINKVLDIRKSGLKMYPGDINYYLYKRKELVEVSIPESDKYETSSQRNQTNDNISRKEQKRLEAELRQKKYQATKDLTKEIEKLEKQISLLEDEQKAIQDKLADPSFYSDAEKVKNTNKRFKEVEKELEELMIQWESKTEELNNILNQFN
>NC_017464|2659999:2688654|2661357_2662983_-|WP_148267645.1|DBSCAN-SWA
MKLSIGYDIPTLQSRIGGTSSWYIGDRPWQRGYITTGAWREDEEDVVYGYSKSSPPTLTGITGSIYSFISIFGGLTPDGFVSSTHFWYADDGDELSTTMRAGVTFLGTHVTSFTVPNAYQKIQKYLNGEWIVHYNYGQTVGAPGWQVCVPPSYPIIGMAFKYDNLFEFFRTGKAYGLGYRGISGNWQYCDPTIVYFGQEFRERIAFEILGRMCHLLQDMSVPAHANIDPHGNDDALIPDYYENYFGDDFYWNADNIYTQIGGVINPTLYQPSNPLHFLMYTTNQMSNHFSTQGPHKKSNNDYFSGNGTSAEIAYLNSLNVSQFGIPTSDNGPWNYDAIINVRNKMFPQAIRATAGLLYWFANECNLIPPPPTIAPIISNFTQSPKPIYQGTSGTVTCNLSQGNGNLTYNWSIVYGKPGVSVSFYGNQAEISYSSNSLNYKASENGKYSIEAPIGIELQCSVYNSIGSDVKRYVVDLATTPHGCPFVYTWNGETWVEDNNILPQSQDPDLLGQDVTDFYQLYTKPVLEDDKYYLAIGEYEEV
>NC_017464|2659999:2688654|2659999_2660983_-|WP_014559435.1|integrase,transposase|DBSCAN-SWA
MWVEPEIRDSVVKQITYLSFRSGIPVKKLLPIIGLCRVKFYKWVKRSGTANNHNGKIPKTHWLTPDEVKLIEDFAREHYSESDYFLKDGYRRVAYKMLDLNIVAVSPSSVYRILKKAGLLNKWNTEKSNLKATGFKQPDFPHKHWHVDIKYLNFNGTFLFLISVLDGYSRYALHHEVRHTMNEYDVQLTVQNAKEKFPLARPRIISDNGAQFISKEFKQFIKDAEFTHVKTSVNYPQANGKIERYHRTISEECLRIKSPVSFDDFKIYIEDYVNFYNTKRLHASLNYLTPEDYLLGRKEIRITQRELKLEKAELNRASYWKTLEQAA
>NC_017464|2659999:2688654|2669401_2669797_-|WP_014561187.1|DBSCAN-SWA
MKKFFFHSSVLVLLIVVSFIFTSCATIFKGSTDDVSFSSDPTGAKVYVNGSLLGTTPFQLELKSKNSYTIEFKKDGYETKTVVLNNSVGGGWIVLDILGGLFPVIIDAATGNWYSLDQEHVNAVLEKQQNK
>NC_017464|2659999:2688654|2676303_2676765_+|WP_014561192.1|DBSCAN-SWA
MKIIEGKYSAAGKKFAIILSRFNEYIGESLLKGAIDCFEKHGVSQDSIDVIKVPGAFEIPVTADKLASSKKYSAIVCLGVVIRGATPHFEYVASTASNGIAQVSLKHSLPVIFGVLTTDTIEQAIERAGTKAGNKGWDAALTALEMSDLFKQI
>NC_017464|2659999:2688654|2664009_2664654_-|WP_014561184.1|DBSCAN-SWA
MRYKQNNQVPLAPTGLAISKSANNHPYLQWPANAEPDIYQYVVEKYAGEFGWVALTQTANRYYEDVTESYCTAVPPAQCEAGHWVYYRLKAVDLQSLVSNPSGSVGTYVLGGIPYKIGGEGENQKTPEKYTLTQNYPNPFNPSTTIDFSIKENSNVTLKIYDMLGKEVALLVNERKEPGKYSVTFNASELPSGIYVYRLDANDFTATKKLMLVK
>NC_017464|2659999:2688654|2664722_2665706_-|WP_014559435.1|integrase,transposase|DBSCAN-SWA
MWVEPEIRDSVVKQITYLSFRSGIPVKKLLPIIGLCRVKFYKWVKRSGTANNHNGKIPKTHWLTPDEVKLIEDFAREHYSESDYFLKDGYRRVAYKMLDLNIVAVSPSSVYRILKKAGLLNKWNTEKSNLKATGFKQPDFPHKHWHVDIKYLNFNGTFLFLISVLDGYSRYALHHEVRHTMNEYDVQLTVQNAKEKFPLARPRIISDNGAQFISKEFKQFIKDAEFTHVKTSVNYPQANGKIERYHRTISEECLRIKSPVSFDDFKIYIEDYVNFYNTKRLHASLNYLTPEDYLLGRKEIRITQRELKLEKAELNRASYWKTLEQAA
>NC_017464|2659999:2688654|2666676_2667177_-|WP_014560214.1|DBSCAN-SWA
MKRIFFFLVLFCSFALAQGWNSTITTSINEPNLEKMDLTANTSGIHVLIKRTNGNIVYYFLNSSGVVNAGKTYTMEADGDFPNIVASNEVVYALYKAGNNIKGKYSTNGGTSWSNLPNNISTTSNLCNGIDAVYENGYGIHLVWATRDNYPYFETYYYRLDLANNQ
>NC_017464|2659999:2688654|2671695_2672415_-|WP_014561188.1|DBSCAN-SWA
MNKLIPKIFLILIFAAASAFSQYQNHDFSISVGAVYITSAELFLNPNSSDIFLRNQSFELKDIFSPGMEVRYKISDAVVVGLSAEYGRKSERGNFLTVLAGSQIILLESEDGFTFIPIELSVYNILPFSTESFKFNMAGGVGFYYATHTRKFGDTDISILETKPVLGIQVSTGMEYFVKENIGIRLQLKFRAPEVKVKSKYNSTTVNYKGNTITILQDTFDSKVGVNGAVFMLGVSYSF
>NC_017464|2659999:2688654|2660988_2661294_-|WP_014559436.1|transposase|DBSCAN-SWA
MKNEKRKFTAEFKVQVLREHLENQVSVAKICEQYNINPNLFYLWKKELFAGALERFSNKKNSNTDQVKLSKLEEKLKDKDSLISEIVEDNLRLKKKLNGGY
>NC_017464|2659999:2688654|2674777_2675467_+|WP_014561190.1|DBSCAN-SWA
MNTTNIDFLKNIPLFSDLDDDTLQKIYKSGLLQNFRKNSVILSEEDAGSAMFFIVEGKVKVSRSSGDGKEVILAILNESDFFGEMAILDGMTRSATVTAVEDSKLFIIQRAEFLELLKNYPEVSIALLQELSRRLRAATMKIKALSLKDAEGKVATVLLQIADEVGKIRQGIVEIEDLPYQQELANMAGTSRETISRTLHSFAKKGMIELEGSKVKILDYEKFKELYGQ
>NC_017464|2659999:2688654|2686075_2687413_-|WP_014561201.1|DBSCAN-SWA
MKYLLIPKFIVTNDKNDSILTNHAVEIIDGKISSVIELKNFVRKNYPGEIFHFPELTLIPGFVQTHIHLCQTLFRGLADDLQLLDWLQYRIFPYENSHDKNSLRASVKVGINELLRGGTTTILDMGTLRHQEVIFEELIISGIRAFAGNCLIDQNDLFPQFKSTTKEQIEYTYSLAKDFHNQAEDRIKYGFAPRFVLSCSEELLKESFMMKNDFEGAVYHTHSSENKNEIAEVRKKYGKENIEYFNSINTIDDHSVFAHCIHTSENEIEIMKQTKMRVAHCPSSNLKLASGIADIPRYLKEGISVSLGADGAPCNNNLSAITEMRLAALIQKPIYSADVMDAKTVFKLATIEGAKALHLENEIGSIEIGKKADLVLLNLNSFNNSYVENENSIYSDIVYSSGMNNIHSVIVDGKWLVKEFKSLVYDENEITENAKSELQKLLGRV
>NC_017464|2659999:2688654|2666073_2666433_-|WP_041294151.1|DBSCAN-SWA
MFYAKYVNGVPIRNDLLYRTRSVSGTTWSSPTTLATSIEESGNAFNLTKTTNDNIHLVVYPQYVDPNFGLAYRTYNGSSWTSPILLDTDPSYGRNVGFTSVSNDLFLTLMRGSDNYYNA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2655815:2655831	attL	NA	NA	NA	NA
WP_014559435.1|2659999_2660983_-|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B1P773	Bacillus_phage	4.1e-12	24.6
WP_014559436.1|2660988_2661294_-|transposase	transposase	NA	NA	NA	NA
WP_148267645.1|2661357_2662983_-	hypothetical protein	NA	NA	NA	NA
WP_014561183.1|2663086_2663647_-	hypothetical protein	NA	NA	NA	NA
WP_014561184.1|2664009_2664654_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_014559435.1|2664722_2665706_-|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B1P773	Bacillus_phage	4.1e-12	24.6
WP_014559436.1|2665711_2666017_-|transposase	transposase	NA	NA	NA	NA
WP_041294151.1|2666073_2666433_-	hypothetical protein	NA	NA	NA	NA
WP_014560214.1|2666676_2667177_-	hypothetical protein	NA	NA	NA	NA
WP_014561186.1|2667202_2668972_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_014561187.1|2669401_2669797_-	PEGA domain-containing protein	NA	NA	NA	NA
WP_041294403.1|2670022_2671009_-|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	3.9e-63	43.9
WP_014561188.1|2671695_2672415_-	hypothetical protein	NA	NA	NA	NA
WP_168026842.1|2672499_2674569_-	hypothetical protein	NA	NA	NA	NA
2673789:2673805	attR	NA	NA	NA	NA
WP_014561190.1|2674777_2675467_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_014561191.1|2675473_2676301_+	PHP domain-containing protein	NA	NA	NA	NA
WP_014561192.1|2676303_2676765_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.4e-31	47.7
WP_014561193.1|2676872_2679107_+	periplasmic ligand-binding sensor domain-containing protein	NA	NA	NA	NA
WP_014561194.1|2679111_2681079_+	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	6.1e-60	30.9
WP_014561195.1|2681110_2682088_-	ROK family protein	NA	NA	NA	NA
WP_014561196.1|2682205_2682979_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA
WP_014561197.1|2682990_2683941_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_014561198.1|2684041_2684728_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_014561199.1|2684728_2685490_-	hypothetical protein	NA	NA	NA	NA
WP_014561200.1|2685486_2686074_-	XTP/dITP diphosphatase	A0A2P1DNN0	Cassava_brown_streak_virus	4.3e-17	34.6
WP_014561201.1|2686075_2687413_-	amidohydrolase family protein	NA	NA	NA	NA
WP_014561202.1|2687516_2687879_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_041294154.1|2687997_2688654_-|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA