CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017738	Helicobacter cetorum MIT 00-7128 plasmid pHCW, complete sequence	0 crisprs	NA	0	0	0	0
NC_017737	Helicobacter cetorum MIT 00-7128, complete genome	3 crisprs	cas2,cas3,csx20,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas1	6	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NC_017737_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017737_1

494325-494427

Orphan

Consensus_repeat	Method
GGTATTATCAATCCTAAAGACATTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017737_1

>merge|NC_017737|1|494325-494427|CRISPRCasFinder
GGTATTATCAATCCTAAAGACATTACTAACAAAGATAACAAGGTTATCTATGATACTACCCATAACAAAGTTGCCAAAGGTATTATCAATCCTAAAGAAATTA

>NC_017737|1|1|494325-494427|CRISPRCasFinder
GGTATTATCAATCCTAAAGACATTA	CTAACAAAGATAACAAGGTTATCTATGATACTACCCATAACAAAGTTGCCAAA
GGTATTATCAATCCTAAAGAAATTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017737.1\|WP_014660620.1\|479179_479902_+\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224060
NC_017737.1\|WP_014660631.1\|495961_496414_-\|hypothetical-protein	unknown	unknown	unknown
NC_017737.1\|WP_014660635.1\|498968_499898_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|179681
NC_017737.1\|WP_043902744.1\|487007_488399_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366353
NC_017737.1\|WP_014660624.1\|484235_484928_+\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NC_017737.1\|WP_014660630.1\|495448_495715_+\|hypothetical-protein	unknown	unknown	unknown
NC_017737.1\|WP_014660637.1\|501460_505012_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143443
NC_017737.1\|WP_104761065.1\|506604_507219_-\|cytochrome-C	unknown	unknown	gnl\|CDD\|367425
NC_017737.1\|WP_014660621.1\|479904_481167_+\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|235648
NC_017737.1\|WP_014660627.1\|488459_489827_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|240393
NC_017737.1\|WP_014660622.1\|481240_482488_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|372434
NC_017737.1\|WP_014660634.1\|498177_498966_+\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|188064
NC_017737.1\|WP_014660636.1\|499938_501429_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NC_017737.1\|WP_014660623.1\|483291_484221_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|272922
NC_017737.1\|WP_081478652.1\|497019_498039_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|223548
NC_017737.1\|WP_014660638.1\|505228_506599_-\|hydroxylamine-oxidase	unknown	unknown	gnl\|CDD\|290183
NC_017737.1\|WP_014660632.1\|496436_497033_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239488
NC_017737.1\|WP_014660628.1\|489826_490012_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340117
NC_017737.1\|WP_014660625.1\|485049_487002_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NC_017737.1\|WP_043902743.1\|478779_479175_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|129254

Protein	Function_ID	Function_description	E-value
NC_017737.1\|WP_014660620.1\|479179_479902_+\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224060	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only].	4.87458e-143
NC_017737.1\|WP_014660635.1\|498968_499898_+\|4-hydroxythreonine-4-phosphate-dehydrogenase	gnl\|CDD\|179681	PRK03946, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional.	1.56323e-178
NC_017737.1\|WP_043902744.1\|487007_488399_+\|hypothetical-protein	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.12629e-16
NC_017737.1\|WP_014660624.1\|484235_484928_+\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	2.83972e-116
NC_017737.1\|WP_014660637.1\|501460_505012_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143443	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.	0
NC_017737.1\|WP_104761065.1\|506604_507219_-\|cytochrome-C	gnl\|CDD\|367425	pfam03264, Cytochrom_NNT, NapC/NirT cytochrome c family, N-terminal region. Within the NapC/NirT family of cytochrome c proteins, some members, such as NapC and NirT, bind four haem groups, while others, such as TorC, bind five haems. This family aligns the common N-terminal region that contains four haem-binding C-X(2)-CH motifs.	5.56784e-37
NC_017737.1\|WP_014660621.1\|479904_481167_+\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|235648	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.	1.3601e-136
NC_017737.1\|WP_014660627.1\|488459_489827_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|240393	PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.	3.8499e-171
NC_017737.1\|WP_014660622.1\|481240_482488_-\|HD-domain-containing-protein	gnl\|CDD\|372434	pfam13023, HD_3, HD domain. HD domains are metal dependent phosphohydrolases.	2.01405e-35
NC_017737.1\|WP_014660634.1\|498177_498966_+\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|188064	TIGR00559, Pyridoxine_5'-phosphate_synthase, pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	2.66384e-110
NC_017737.1\|WP_014660636.1\|499938_501429_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NC_017737.1\|WP_014660623.1\|483291_484221_+\|ACP-S-malonyltransferase	gnl\|CDD\|272922	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase. This enzyme of fatty acid biosynthesis transfers the malonyl moeity from coenzyme A to acyl-carrier protein. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension. [Fatty acid and phospholipid metabolism, Biosynthesis].	3.95325e-134
NC_017737.1\|WP_081478652.1\|497019_498039_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|223548	COG0472, Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane].	1.60426e-45
NC_017737.1\|WP_014660638.1\|505228_506599_-\|hydroxylamine-oxidase	gnl\|CDD\|290183	pfam13447, Multi-haem_cyto, Seven times multi-haem cytochrome CxxCH. This domain carries up to seven CxxCH repeated sequence motifs, characteristic of multi-haem cytochromes.	3.76883e-26
NC_017737.1\|WP_014660632.1\|496436_497033_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239488	cd03394, PAP2_like_5, PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.76877e-28
NC_017737.1\|WP_014660628.1\|489826_490012_+\|hypothetical-protein	gnl\|CDD\|340117	pfam17402, DUF5408, Family of unknown function (DUF5408). This is a family of unknown function found in Helicobacteraceae. Family members are predicted to contain one trans-membrane region.	2.78413e-08
NC_017737.1\|WP_014660625.1\|485049_487002_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NC_017737.1\|WP_043902743.1\|478779_479175_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|129254	TIGR00150, Hypothetical_UPF0079_protein_yjeE., tRNA threonylcarbamoyl adenosine modification protein YjeE. This protein family belongs to a four-gene system responsible for the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have (weak) ATPase activity. [Protein synthesis, tRNA and rRNA base modification].	1.40626e-36

>NC_017737.1|WP_014660628.1|489826_490012_+|hypothetical-protein
MQENESLQIAKRAIKIVFFWGLLVLLLMMINIYILINQVNATAEIGKKVKQLEKATQNYEP
>NC_017737.1|WP_014660627.1|488459_489827_+|FAD-dependent-oxidoreductase
MSMEFDAVIVGGGVSGCATFYTLSEYSSLKRVAIVEKCPKLAQVSSSAKANSQTIHDGSIETNYTAEKAKKVRLSAKKTREYALKKGLQNKAIFETQKMAIGVGDEECAFMQKRYEAFKEIFEGLESFDKATIKELEPNVILGAHGVDRHENVIGHGFKKDWSTMNYAKLSESFVEEAMKLKPDNKVFLNFKVKKIERRNEGYALISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCLPVAGSFYFVPDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTALAMPKLERNKHLLKGISLELLKMDFNKDVFKIMFDLMSDREIRNYVFKNMVFELPAIGKRKFLKDAQKIIPSLRLEDLEYASGFGEVRPQVLDRTKQKLELGEKKICTHKGITFNMTPSPGATSCMQNALIDSQEIAEYLNESFDLERFYKDLSPEELETLNKES
>NC_017737.1|WP_043902744.1|487007_488399_+|hypothetical-protein
MKYYKIHFVWIVCLLLLASCTQRDLKLKDLSLSQNASSYLKTDSQTTLNALEIQKLQQTLKDNYLKAWYSPWIDMKAKSNLKEVFWMLPIVRNIQGYGEDLKLNSKELNNTLIASMDIKHYPSVSIKAIVVRDAHIRAMPTNKPYYRSKKGYPFDRYQNSLIFQGTPVLITHFNTTKTYAHIQSSFVYGWVKMSDLAYMHNKDIELLTHLKDYVMPKSDKIPLYTAYGNFYTNARVGELFALIPPKKDPSKKMLYRTKEPLKAYGFSKDPKGYATLQSITLNEKDFFLFPKALNSANMAEMIDTMMGQKYGWGGLLENRDCSAFTRDSFANFGILLPRNSYAQSHYANNYIDLSKMNAIEKERYIIAHATPFATLLYLRGHIMLYLGEYNHQAVVAHSVWSVQTQKHFKTLSHNIGGVVITSLWLAKEHNGVFSKKRLLIDRVLGMSDLQAYIQTSLKTLNTN
>NC_017737.1|WP_014660625.1|485049_487002_+|RNA-polymerase-sigma-factor-RpoD
MKKKANEEKTPKKATQEIPETKSKETKLVKKPSAKKLSFNEELEELFASSLNNCISYESIVQLCAKVPTLAQVKKIKELSQKYKKELVSSSEYAKKLNAIDKIKNTQEKQKVLEEELEDGYDFLKEKEFLEWSRSDSPVRMYLREMGQIVLLDKEEEVELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRNFDDDDDSSSSDSKKEEEIDDEEEGEEGKKVVSEKDKKRVEKVLESFKALDKAKKEWLKALDEPRDENEDELVYLLTLAYKRQMLKDRLYDLGPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDALVENHKKILANITNMTKEDITNQVPEATMVSVYMELKKLFQTKEASEEGFDLDPNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEYEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHMQENGKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLEAPVGNDDDGKFGDFVEDKNVISSMDHIMREDLKAQIDGVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYLRI
>NC_017737.1|WP_014660624.1|484235_484928_+|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase
MQKIGILGAMREEIAPLLELFGIDFEEISLGGNVFHKGIYQDKEIVIAYSKIGKVHSTLTTTSMILHFGVKKVLFSGVAGSLIKDLKINDLLIANKLVQHDVDLSAFNHPLGFIPESEVFVKTSEELNALAKVVAKEQGIILKEGVIASGDQFVHSKERKEFLIKEFNASAVEMEGASVAFVCEKFSVPCCVLRSISDNADEDADMSFDDFLEQSAKTSAQFLKSMVDKL
>NC_017737.1|WP_014660623.1|483291_484221_+|ACP-S-malonyltransferase
MQYALLFPGQGSQCVGMGKSFYESHSLAKELFEKASSVLKVDMKKTLFEENELLNQTAYTQPAIYLVSYIAYKLLDQRVSGGLKPTFALGHSLGEVSAVSLSGALDFDKAIKLTHQRGLFMQEVCQGKDVSMMVVLGVSEEKLLSLCQKTKNVWCANFNGGMQVVLAGLKNDLKALEPTLKEMGAKRVVFLEMSVASHCPFLEPMTLKFRELLEKNLKDKFSFEVISNATKEAYSNKEKAIELLSLQLTQPVHYQDCIKENNDRVDAFFELGCGTILKGLNKRLSNKPTMSIGDNKGLEEAIEFLEEYV
>NC_017737.1|WP_014660622.1|481240_482488_-|HD-domain-containing-protein
MPYGAHPIKINLFRYFSSLKTPKLKPKLLKRLFVSASIRRWNDQACPLEFVELDKQAHKAMIMYLLAKDLEDRGEVIDFEKLIQYFCFEFFARIVLTDIKPPIFYELKKTHNKELAHYVAQNLNDEIKDYFSLETLQEYLSQTPNNLEAQILKSAHFYASKWEFEIIYQFNPNMYGVKNIKDAIDKELRNNEHLFEGLFGEREDLKRIVSMFGQLRFQKRWSQTPRVPETSVLGHTLCVAIMGYLLSFDLNACKNMRINHFLGGLFHDLPEILTRDIITPIKRSVIGLDDCIKDIEKKEMQNKVYSLVSKSVQEDLKYFTENEFSNRYKDTQNQIIVAKNAKDLFKSFNKDEYQGVCGELLKVCDHLSAFLEAKISISHGISSADLINGAQNILKLRSHTQLLGLDLGVLFRDFK
>NC_017737.1|WP_014660621.1|479904_481167_+|RNA-polymerase-factor-sigma-54
MAILRTSLSPKNKLNATLKGWLPILQSELEDLEETLQSYSADNPLIKIESQRMKTFSERFDFKKRPSLQNLSDKIESLNIAEKGLYETLEEQLIPPLFPTQISYEIALDIIQGLNNEGYFEEDIQERAKALKVDSEVYEKVRKRFSYLSPAGIGARDIKESFLFQLENRELNDNALYEEVKNIILHLENHHQFSKNPYYEKALKILKTFKNPPAIEFLEKEKEVIPELFIVEVDGEIVVRLNDESYPKISLEEERLKDSSYLKEKMREAKDLIDALNLRKATIQKIGLMLLEYQYDFFKGKELKPLRLVDLAEEFNHSPSTISRAISNKYLACERGVFPIKSFFSTALDNSDISNAVIKDYLLELIKNENPTKPLSDAKILEMIEEKFNLKMVRRTITKYRQLLNIASSSERKKLYLMRA
>NC_017737.1|WP_014660620.1|479179_479902_+|LPS-export-ABC-transporter-ATP-binding-protein
MDILKAEHLSKQIKKTKIVHDVSLEVKSGEVVGLLGPNGAGKTTTFYMICGLLEPSGGNVFLNDINLATYPLHKRSNMGIGYLPQESSVFKELSVEENLALAGETTFKNSKESQKKMEQMLDAFNIQAIRGRKGMSLSGGERRRVEIARALMKNPKFVLLDEPFAGVDPIAVIDIQKIIESLIELNIGVLITDHNVRETLSVCHRAYVIKSGTLLASGNANEIYDNALVRKYYLGEHFKA
>NC_017737.1|WP_043902743.1|478779_479175_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MQANLNELDKIAHEILKDNFLGVVVLKGAVGSGKTTLVQACLKYLNLEVQVTSPTFSLMHAYSESVFHYDFYMRPLEECLKLGMLECLLEEGVHFVEWGDEFLEKILKKHDIPTKIVEISTNNDSRFYTIR
>NC_017737.1|WP_014660630.1|495448_495715_+|hypothetical-protein
MKGFLKVFLLACLAFSSMFSASLEIGHNIKHNKKIYKLSKNNSLERVSVPMLKFNESLSLGSYIEMPKYSRRHFGGRVNGGLMMRFRF
>NC_017737.1|WP_014660631.1|495961_496414_-|hypothetical-protein
MVKKVLLGLLLTNITNAEISTGHYEIITDMSKTFLKAKNDFLELNKTFKTCIEEEENSANIRIQSTFLGRITTLEQQFYDYFEKDFKSTDDLRALLTNIQVLEHESLRIIPCVNKRNSKAFKELEQSIKQTIQLEHKMDNFLDNTKKSSH
>NC_017737.1|WP_014660632.1|496436_497033_-|phosphatase-PAP2-family-protein
MKWFRSAFLSLLLCSHTLESKPLSEGAYILEEIGDVLRFLPIFVGTVSLAMRDYRGLGELAIGTLVSQGVIYGIKGAFSKAHAHGASVSFAKRPCCDSYRGMPSGHAGGVFSAAGFVYYRYGWKPALPVLALAILTDASRVVAQKHTIWQVVVGSLIGWGFAYLFTTRYKPKNWMLYPEISSDFKGNGRYGVSFSYQW
>NC_017737.1|WP_081478652.1|497019_498039_-|glycosyltransferase-family-4-protein
MLPVLYFLISCLVCFLIILWSKKSMLFIDNANKIQGFHKERTPRAGGLGIFISFVLAYYLQQQEAPFENNLVFIGILLVFISGFLEDINFSLSPKIRLILQSLGALCVITSAHLVVSDFSPLFSLPYFLAFLFGIFMLVGISNAINIIDGFNGLASGICLLTLLVIHYIEPTSLSCWLAYMVLGFMVFNFPLGRIFLGDGGAYFLGFVCGILLLYLSLEQKISVFFGLNLMLYPVIEVLFSILRRKLKRQKATMPDNLHLHTLLFKVLELHSYAYANPMCAFILVLCNLPFILMSTFFRLNAPVLIVIGLIFIGCYLWGYYYLNRQVKLLEKRAHYEMV
>NC_017737.1|WP_014660634.1|498177_498966_+|pyridoxine-5'-phosphate-synthase
MRFGLNIDHIVTLREVRKTYEPEILEALLIAKNTYKVDLITIHLREDRRHIQNEDVLKLLENSLLPINIECSINANITDFLCSLKNKPSKVTIVPENRAEITTEGGLDCSLKDLPKTIKAYQNRGIEVSLFIDPNLASLKFAQKHGVKQVEFHTGVYANLHNALYSNANHHINAINALREKTPKELKEELQNAFLQLRKMSKEAFFMGIEVCAGHGLNYSNVKEMLKIPSLRELNIGHSVISRAVFVGLEKAILEMAQLIKR
>NC_017737.1|WP_014660635.1|498968_499898_+|4-hydroxythreonine-4-phosphate-dehydrogenase
MLKKKIAISCGDIQGVGLELILKSHKEVSEICEPLYVVDNKLLVQANQLLNNVYEVKSLNTLSLDTQMPPLNSSTIGKVDAKSGAYSFESFKTACELADSKEVDSICTMPINKLAWQQAQIPFVGHTDFLKQRYQRHEIIMMLGCSKLFVGLFTDHVPLSKVSKLIQTKALIKFLLAFQKSTQAKLIQVCGFNPHAGEDGLFGKEDKKILKAIQQCNEMLGFECFLGPLPADSAFSHRRRAITPFYVSMYHDAGLAPLKALYFDESINVSLNAPILRTSTDHGTAFDIAYQNKASNKSYLNAISYLAIR
>NC_017737.1|WP_014660636.1|499938_501429_-|sodium/proline-symporter-PutP
MEQVVLSTPIITMFVAYSLLMLYIGFYFYRQNETTEDYFLGNRSMGPVISALSAGASDMSGWLLMGLPGALYVGGLINSHIAIGLSLGALINWVFIAKRLRIYTSVIANSITISDYFETRFSDDKHILRLISAFVILIFFIFYISSGLVSGAKLFEATFGIKYANALSIGTLIIVSYTFLGGYKAVCWTDLIQGLLMMSALIVVPIVMVTQIGGVEESLKIIREIKPENLSFLQGSSLVAIISSLAWGLGYFGQPHILVRFMSIRSVREIPKATSVGISWMLISLIGACSMGLLGIAYAQKFNLSLEDPEKIFIVMSQLLFNPWIAGILLSAILAAVMSTASSQLLVSSSTIAEDFYTTIFHKDAPAKLVMTISRLSVLGVACIAFFISTDRNASVLSIVSYAWAGFGASFGSVILFSLFWERMTRIGAIAGMLSGASTVILYDKFGKSFLDIYEIVPGFIVASVCIVVFSLFSNVREGTKEAFETMLKEIESLKH
>NC_017737.1|WP_014660637.1|501460_505012_-|aldehyde-dehydrogenase-family-protein
MQKIIDDTLELARKLQNSISNNLSEQEKAFHSKMQKLLSNPENKVMLIELMDRSFRCEDNKARFEMIEHVLDKYKSREIFSSFEKLLLMGFLSFGKMLPNMSVPFFVSKIRSDTKAMVLEQEESKLKERILARKNEKITLNVNFIGEEVLGEEEANARFEKYSQALKSNYIQYISIKITTIFSQINILDFEYSKKEIVKRLDALYALALEEEQKQGIPKFINLDMEEFRDLELTVESFMESISKFDLNAGIVLQAYIPDSYEYLKKLHAFSKERVLKGLKPIKIRFVKGANMESEETIASVKDWELPTFSSKQDTDSNYNKMLDFILEDDNYKYIHIGTASHNIFEIAYVYTRIHAINDPIALEHFTFEMLEGMSLQASLELKDMHKLILYAPVCDEAHFNNAIAYLVRRLDENTSSDNFMKAFFNLKVDTKEWKDQEQRFLDSLKGIATLNNSTKRTQDRNAKQSGHTTYKNNSFKNESDTDFILKANREWAKKVREKMYNAPILELYPEIDGRFENPNLTPLEVFDKIFHKKIASVHLADEEAILKALEVTKSDKSHFSQKSFEEIHALMSRTAQLFRERRGDLIGISALEVGKTFVETDAEVSEAIDFLEFYPYSLRVLQEQNKETQFAPKGVGVVIAPWNFPVGISVGTIAAPLAAGNRVIYKPSSLSSVTGYKLCECFWDAGVPRDALIYLPAKGSDISKYLLKDESIKFAILTGGEDTAYKMLEANPTLALSAETGGKNATIVSKMADRDQAIKNIVHSAFSNSGQKCSATSLLVLEKEVYEDENFKKTLIDATLSLNVGDPFDFKNKIGTLADKPNEKVKKAMSELEKHEHYEIPVSFVNDNPYLMKPSIKYGTKKGDFTHLTELFTPILSVMKAENLDDAIAIVNSTGYGLTSALESLDEREWEHYLERIEAGNIYINKPTTGAIVLRQPFGGIKKSAVGFGRKVGIFNYITQFVDIHQEKEDDNILESNLSECLESLTKKGYDEHTHELNRAIFMAKSYAYHYKHEFSQAKDYVKIRGEDNLFSYTKVKSVGYRITENDSLSDMLGIALACLIAQIPLTLSIENKQTNKNLVFFLECLDALRMNAPIFYESLQEFSEKLSEFNRVRYLNHKLDLLHQKASSLGLVLATTKPCLNGRFELLYYHLERSVSISYHRYGNLGSRALEQKTCHKSCCH
>NC_017737.1|WP_014660638.1|505228_506599_-|hydroxylamine-oxidase
MFKRLSLVFLTLVSLHADTSSKGGSNVNAPGLQTNVQLKVFRELKPEAKGCIECHAKENPGVVNDWRKSRHAHAGVSCIDCHGTTKDSPMLTMDGHKGSKTPISVLVSPNTCGKCHEKEVKEFHNSGHSRGALQPLAKGNMRELMRMIEGRNHPDLQQAPEATGCFQCHGTVIKLDKNRRPTPETWPTYGIGTAFPDGSVGNCASCHSAHKFSVAESRKPAACASCHMGPDHPDIEIYNNSMHGHIFNSEGNQWNFDAAPGTWGVADYRAPTCATCHMSGNSKSDVTHNVSRRLKWNMFAPRSELRTGGLETAAKDWANGFKITKGNILAGNPKGVEAAREEMKAVCKDCHTIKHVENVFTMGDKNVMLFNTYYDEAVKMRDELKKKGLLEKDPWSDEFQKTFYHLWHHEGRRMRHGGLMGAPDYSHWHGVFEVQQDIRKLRKIYNKRMKSGKIED
>NC_017737.1|WP_104761065.1|506604_507219_-|cytochrome-C
MRKNRYLVLLIFVLGGIVGMVFSLISAEFIEKTADDKFCGSCHIMQPEVKAFLQDSHGGNNKVGFKAKCVDCHLPHDSVTHYVIQKARSGLNDIIGNVFFNPKTHVNWEERRKKAKEYVFDSGCLHCHTNLRNATSSNLKSFLPHRDYFEKYTKKTCVECHINKVGHQNLSQHLKDYLKKDYRPYPENSLKQEALKTTHPNTKE

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Crispr_ID: NC_017737_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017737_2

1290126-1290230

Orphan

Consensus_repeat	Method
ATTACGATTTTAGGATTTTTAGATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017737_2

>merge|NC_017737|2|1290126-1290230|CRISPRCasFinder
TTTGGGTTATTACGATTTTAGGATTTTTAGATTATTGCAAATTTTTCACTTTAGATGATTGCAAATTTATATTTTCTTAGATTACGAATTTAGGATTTTTAGATT

>NC_017737|2|2|1290126-1290230|CRISPRCasFinder
TTTGGGTTATTACGATTTTAGGATT	TTTAGATTATTGCAAATTTTTCACTTTAGATGATTGCAAATTTATATTTTCTTAG
ATTACGAATTTAGGATTTTTAGATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017737.1\|WP_014661332.1\|1300089_1300770_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NC_017737.1\|WP_014661320.1\|1284125_1284860_+\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270257
NC_017737.1\|WP_014661326.1\|1289499_1290084_+\|tumor-necrosis-factor-alpha-inducing-protein	unknown	unknown	gnl\|CDD\|183421
NC_017737.1\|WP_014661322.1\|1285559_1286342_+\|sulfate/molybdate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224043
NC_017737.1\|WP_014661336.1\|1303428_1304154_+\|EI24-domain-containing-protein	unknown	unknown	gnl\|CDD\|377798
NC_017737.1\|WP_014661329.1\|1295389_1296895_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_017737.1\|WP_014661335.1\|1302361_1303246_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|234605
NC_017737.1\|WP_014661317.1\|1281355_1281940_-\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|234745
NC_017737.1\|WP_014661324.1\|1287363_1287528_+\|hypothetical-protein	unknown	unknown	unknown
NC_017737.1\|WP_014661027.1\|1291017_1291365_-\|hypothetical-protein	unknown	unknown	unknown
NC_017737.1\|WP_014661328.1\|1293411_1294905_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_017737.1\|WP_014661318.1\|1282072_1282852_-\|DUF3943-domain-containing-protein	unknown	unknown	gnl\|CDD\|379030
NC_017737.1\|WP_014661327.1\|1291765_1293394_-\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NC_017737.1\|WP_014661334.1\|1301422_1302346_-\|class-II-fructose-1,6-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|180280
NC_017737.1\|WP_014661325.1\|1287538_1289020_+\|disulfide-bond-formation-protein-B	unknown	unknown	gnl\|CDD\|224412
NC_017737.1\|WP_014661319.1\|1282943_1283978_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181775
NC_017737.1\|WP_014661333.1\|1300840_1301404_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NC_017737.1\|WP_014661323.1\|1286346_1287195_-\|glycosyltransferase-family-25-protein	unknown	unknown	gnl\|CDD\|225843
NC_017737.1\|WP_014661321.1\|1284888_1285563_+\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226629
NC_017737.1\|WP_014661330.1\|1296912_1298373_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099

Protein	Function_ID	Function_description	E-value
NC_017737.1\|WP_014661332.1\|1300089_1300770_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.61702e-25
NC_017737.1\|WP_014661320.1\|1284125_1284860_+\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270257	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins that serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arranged around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate is where the central metal atom is in a hexacoordinate configuration. This octahedral geometry was rather unexpected. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.53714e-100
NC_017737.1\|WP_014661326.1\|1289499_1290084_+\|tumor-necrosis-factor-alpha-inducing-protein	gnl\|CDD\|183421	PRK12303, PRK12303, tumor necrosis factor alpha-inducing protein; Reviewed.	2.95053e-106
NC_017737.1\|WP_014661322.1\|1285559_1286342_+\|sulfate/molybdate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224043	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism].	5.50816e-94
NC_017737.1\|WP_014661336.1\|1303428_1304154_+\|EI24-domain-containing-protein	gnl\|CDD\|377798	pfam07264, EI24, Etoposide-induced protein 2.4 (EI24). This family contains a number of eukaryotic etoposide-induced 2.4 (EI24) proteins approximately 350 residues long as well as bacterial CysZ proteins (formerly known as DUF540). In cells treated with the cytotoxic drug etoposide, EI24 is induced by p53. It has been suggested to play an important role in negative cell growth control.	4.53364e-10
NC_017737.1\|WP_014661329.1\|1295389_1296895_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	3.8908e-53
NC_017737.1\|WP_014661335.1\|1302361_1303246_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	1.372e-26
NC_017737.1\|WP_014661317.1\|1281355_1281940_-\|GTP-cyclohydrolase-II	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	1.5947e-106
NC_017737.1\|WP_014661328.1\|1293411_1294905_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.72926e-51
NC_017737.1\|WP_014661318.1\|1282072_1282852_-\|DUF3943-domain-containing-protein	gnl\|CDD\|379030	pfam13084, DUF3943, Domain of unknown function (DUF3943). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 110 amino acids in length.	1.44917e-50
NC_017737.1\|WP_014661327.1\|1291765_1293394_-\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.96329e-51
NC_017737.1\|WP_014661334.1\|1301422_1302346_-\|class-II-fructose-1,6-bisphosphate-aldolase	gnl\|CDD\|180280	PRK05835, PRK05835, class II fructose-1,6-bisphosphate aldolase.	0
NC_017737.1\|WP_014661325.1\|1287538_1289020_+\|disulfide-bond-formation-protein-B	gnl\|CDD\|224412	COG1495, DsbB, Disulfide bond formation protein DsbB [Posttranslational modification, protein turnover, chaperones].	3.94778e-25
NC_017737.1\|WP_014661319.1\|1282943_1283978_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181775	PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II.	0
NC_017737.1\|WP_014661333.1\|1300840_1301404_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	6.12875e-105
NC_017737.1\|WP_014661323.1\|1286346_1287195_-\|glycosyltransferase-family-25-protein	gnl\|CDD\|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	1.04567e-42
NC_017737.1\|WP_014661321.1\|1284888_1285563_+\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	1.42807e-81
NC_017737.1\|WP_014661330.1\|1296912_1298373_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	5.77886e-52

>NC_017737.1|WP_014661326.1|1289499_1290084_+|tumor-necrosis-factor-alpha-inducing-protein
MRNYLKNKSYVKQALLCGVGLLVLQACTCPNTSQKNSFLENVPYWMLQNRSQYVTQGVDSSHIVDGKKTEEIEKIATKRATIRVAQNIVHKLKQSYISKDNKIKQKLTNELFDKMIQPIYDSLTNVNRLGIYINPNNEEVFALVRAQSFDKDILTQGLHKLPLEDQSIKILISKIDNIFKESVNYGDIKIPVGM
>NC_017737.1|WP_014661325.1|1287538_1289020_+|disulfide-bond-formation-protein-B
MQENHSNKFYTLFSLAILGILIFPVGLANFYFGYVLKDSPCIFCWAQRMNMIFIGAVALLVVRFGFKPKYIALLLLIASSGLYESFYHTGSHALEDVGQGFALAIFGLHTQFWAFFVFFSVVVLLSLMLFFAPSIQNFKERSLNTLNKSAFWVFFVVVGSNVIQAFFSTGPFPYIGQSDPVRFSWNLKEAVWSMENWGDLKFPRSVLGRRDVGKPTKLSALPKDNDYQHSPLEITKTLETEKKEVLSLKLNGAITDLNFNEENAILITENQGLYLVSNDLKTIHSHMVLDSYYSATVGSFVGADFNEDENIVIMGNNKTSVEITPNKNANALKNYPYFLEGANSFDEVERNRLKTSRAKNYYIGSARRGDKDTYLVTIPNKRYNDLVIISMLNSDKQVHAEFVPELGDIKLKEKRKLGELHISALALKDNKLYAISKEFNTLLIIDPKTEEIIEVYGLPKEIKNITSASFRDNTLVVTSYEENQNMLYELSNF
>NC_017737.1|WP_014661324.1|1287363_1287528_+|hypothetical-protein
MEFLGLLLTLIAIFWAYKNPKRENFAFGILIVVWLVELTIFIAHSSSVLPNINL
>NC_017737.1|WP_014661323.1|1286346_1287195_-|glycosyltransferase-family-25-protein
MRVFIIHLSEQTCIDFHLQETNIEPLKTSLETQKISYEVFQAIYSKTLQNKLNPLILEHTHPSFVLDNVLELYLKDRAYSKNVLKDFFYALMHCGKRMNLGELGCYASHYLLWQKCVELNEPICVLEDDVKIGGGCFKEKLDFCQKHINKLGYIRLMHLEFEPVLKRATSIKGISKILHFKDGIGTQGYVISPKMAQKLLKYSAKKWVMPVDNIMDRYYLHGVKNYVLEPFAISEDETLSEYSNVQQKIIPKKLSVEIRIGKFLHKAVIKVFNKIVSIIFRN
>NC_017737.1|WP_014661322.1|1285559_1286342_+|sulfate/molybdate-ABC-transporter-ATP-binding-protein
MIKARFKKPLLGARGKFVLDIDLEIEEKEIVALCGESGAGKSTILRVLAGLERVDEGYIEVNHSIWLDTQKKIFLKPQNRKIGFVFQDYALFPHLNVYQNIAFANPKDKNKINEVLHLMRLENLSKQKISQLSGGQAQRVALARALIGAKNLLLLDEPLNALDNALKTEIELGLLEFIKRENLSVILVSHNLSEITKLAQTFLFLNKGILNANQKSLPFSNRLLAKPLFEDENCYHYKILSQTITLPKDCLNPTFKLEFK
>NC_017737.1|WP_014661321.1|1284888_1285563_+|molybdate-ABC-transporter-permease-subunit
MDNEFLITMRLSFSLALITTLILLPIGIFLGYFLSLKRNLLTSLVETLVYMPLVLPPSVLGFYLLLAFSPNSFLGAFLQDTLNLKLAFSFQGLVIGSVIFSLPFMVSPIKSALISLPPSLKEASYSLGKGECYTLFFVLLPNIKPSLLIAIITTFTHTIGEFGVVMMLGGDILGETRVASIAIFNEAEALNYAKAHQYALTLTLISFSLLFITLFLNKKQSSFL
>NC_017737.1|WP_014661320.1|1284125_1284860_+|molybdate-ABC-transporter-substrate-binding-protein
MLKKIIALILFCFINTLLAQDLKIAAAANLTHALKALIKEFQKEHPSTNISTSFGSSGKLYTQIAQNAPFDLFISADVARPKKLYDEKLTPFKAEVYAKGVLVLWSKNLKINSLEILKDPKIKHIAMANPNLAPYGKASLEVLEHLKLTTSLQSKIIYGTSVSQAHQFVLTNNTQIGFGALSLIDKKDKNLSYFIIDKALYTPIEQALIITKHGVNNPLAKVFKDFLFSPKAQAIFKEYGYIVD
>NC_017737.1|WP_014661319.1|1282943_1283978_-|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MFLKRVQEALEAFKNGEMIIVMDDEDRENEGDLVLAGIFSTPEKINFMATHARGLICVSLTKEIAQKFELPPMVSVNDSNHETAFTVSIDAKVAKTGISAFERHLTIDLLCKDTTKPSDFVRPGHIFPLIAKDGGVLARTGHTEASVDLCKLSGLKPVSVICEIMKEDGSMARRGDKFLGDFASKHNLKTLYVSDLISYRLQNENLLQILESKEKEFLNHKTKYYAFLDHQKKSHYAFKFEGSKPNDLAPLVRFHLIKEDYEFLSSNAYESFLRVLERLKLEGGYLIFMHAQTKESSVIKDFGIGALILKSLKIESFRLLSSSEDKEYKALSGFGLKLVETINF
>NC_017737.1|WP_014661318.1|1282072_1282852_-|DUF3943-domain-containing-protein
MSDLLKMLQRLWIIYIIFLLLSLNVEAKSTKLEESLKHHSKNLAWQHFKERFKKSNTLYYTPSSRWKYLGTSAGILGISLVIGIVGLYLMPESVTNWDKQHFGVKSWFEDVRMGPRLDNDSFIFNEVLHPYFGAMYYMQPRMAGFSWMASALFSFVMSTAFWEYGLEAFVEIPSWQDLIITPLLGSLLGEGFYQLTRRIQNNGGKLFGSLFLGRLVIALMDPIGFIIRDLGLGEALGIYNKNEWHSSLSPSGLNITYKF
>NC_017737.1|WP_014661317.1|1281355_1281940_-|GTP-cyclohydrolase-II
MQHLEVSNKAKLPTQFGEFYMQSFREKDSNGTKDHLVIFTPEFSDIPLVRLHSECLTGDALGSQKCDCGGELQMAMERIISSKEGGLVIYLRQEGRGIGLFNKVNAYALQDKGYDTIQANEMMGFRDDERDYSIVGEILEYYHIKKMRLLTNNPKKIIALEKYAEIERESLIICANEHNKKYLEVKKLKMGHLL
>NC_017737.1|WP_014661027.1|1291017_1291365_-|hypothetical-protein
MPNTRLPKRLSHLIDKTEQELQKIQNNLMDFKKNGLHRIRTKDPSLNDKLDELTKLLQEINLTLNQKKATDCCKGHENPNLKTQQAMRDILMGKNVEIIENYSQFSDEVKKGSEY
>NC_017737.1|WP_014661327.1|1291765_1293394_-|outer-membrane-protein
MKITTTKFNKENSVKHFKNNIKFLAPLSLVLSLSLSPLSAEEDGGFMTFGYELGQVVQSVKNPNKYQAMQVAKELNSTLTINSSVDVQKYENSFGVGNGDDIYPQQGLNVVGNLGNALMVALDRGNLISPTIILTSPSGSHLFNAYKKISQALEGIGSQTDQEYNQAFRNQYCFGWTTMGPNSCGGNGLVQELNVSGIVKSYFAYMAEWLKEYPDKYAALQEPNLQALKELGYYGTGNLTLGGVLDKAYSNAVLAIDNITNATLQLNNFNAANASGTLSTAEFTGLVDGIISTSSQALKNLEIASITNGKIGFNPTNAQAVGTGRFNDGSLGQMKALITNTQNTLNAVVQANDNLKAHPWLGQFAAGNSKQTNAMSGFYTKIGYKQFFGKKKAFGLRYYGFFSYNGAGVGNGANYNTVNLLTYGVGTDALYNVFSRSFGSRSIDAGFFTGIQLAGDSYITSLAKSVQVDTKKVTATKFQFLFDVGMRMNFGILKKDMKKHNQHSIEIGVQIPTIYNTYYSSGGTEVKYYRPYSVYWVYGYAF
>NC_017737.1|WP_014661328.1|1293411_1294905_-|outer-membrane-protein
MIKRTKSFVGRLSLVAITCLTISHAEDDGGFFTVGYELGQVMQDVKNPGKSQADTLTNEMNAAYTNNVSANQGANIVGVLSNTFTQYLYSLLGAYPAKQILSNVGGLNNTSDPKFINNILGSGTTPGTIPYQINQTSTGNNQYNTSYEHVFQELSYLSSVEYFLQAMNNVLSTQSSSYQGAPNNDPKNPSSVFYTQYVDFLKAQNQDLYNAANTLMGAILALGDYNTANNTQELTNQQIAQNANQVISASEKTLETLSDNAQKLVSGSSAASQIAGVTSVIQARSASLQTTMLPNALNTLSTLQGLIRKVESTPYLPQFRAGNSRQTNIMNGFYTKWGYKQFFGKKRNIGLRYYGFFSYNGASVGFRETSNSVGLYTYGVGTDVLYNIFERSYQNKSVNFGVFGGIQLAGETFNSSLKNSQYVNKKDIQSTHFQFLFDLGFRMNFGKLGQKTKRHRQHTVEIGVQVPTIYNTYYKSAGTTVRYFRPYSVYWSYGYSF
>NC_017737.1|WP_014661329.1|1295389_1296895_+|outer-membrane-protein
MLFKSKALFLSLVCCIGLYAEDNGGFFTLGYELGQVMQDVKNPGKAQADNLARELNNNVTNNVYMNQASLSVGGNIVGALSNAFTKYLYAFLGAYNANELGLSAPIDTTSQTQQSLLDESAKLIINTMVGSGYCTNLTSTNRINCINSGYTWQPSLSARLESNLSNGYEGTSYPNLSHQLSYLTSANVFFETIDDYLKGKTSYTKYLNFIQNQQKILQEVAPQIQEDAKKLAEFNSQANGNNLSAQRFSSLVQGIIDTSKNIVTELDKGHLMTNAELNTTIQTSLQMAQRANGLDNYLANAKNTLQKIINLNSEVKSTPYLPEFRAGNSRQTNIMNGFYTKWGYKQFFGKKRNIGLRYYGFFSYNGANIGFKSTYNTVGLYTYGVGTDVLYNIFERLYQNKIVNMGVFGGIQLAGETFNSSLRHDPNLVAKVHNTHFQFLFDLGFRMNFGKMGLKTKRHRQHTVEIGVQVPTIYNTYYKSAGTTVRYFRPYSVYWSYGYSF
>NC_017737.1|WP_014661330.1|1296912_1298373_+|outer-membrane-protein
MKITTTKFNKENSVKHFKNNIKFLAPLSLVLSLSLSPLSAEEDGGFMTFGYELGQVVQSVKNPNKYKEIELANEINATKTININNEHMGANIVGNLGNLLMVQLQNLGNLYPQPKSDIKQDFANTNGYQLYEAMYQNAQQAIKKLADITQFGNTTQSLLFQQRYSLNNLYSYFDYMNINVIINNMPSGDLKLADSNQAFYATYQSNLTKIATRNFIDALIAMQTFNASNAGNDLSAKAFTNLVQDMIEQSKTTLNDLNKANIGIVTGYQKGWGKQPISTEKYFDNTQATLTKLIQANNQLKANPWLAQFVAGNSKQTNSMSGFYTKIGYKQFFGKKKAFGLRYYGFFSYNGAGVGNGSTHNQVNLLTYGVGTDALYNVFSRSFGSRSIDAGFFTGIQLAGDSYITSLANNPQLIKQPTTTKFQFLFDVGMRMNFGILKKHQKKHEQHSIEIGVQIPTIYNTYYKAGSTEVKYYRPYSVYWVYGYAF
>NC_017737.1|WP_014661332.1|1300089_1300770_-|NYN-domain-containing-protein
MQKGELEKRVFVFIDAEYVIQSLRTLRNKPREHRILINNILWGNLIEYILANRLLKKVFYYSCELDERENPLTYHSQQRYFKKLQEEISCIDLRLSQLQKVPLKTKSTWNEQQSSSSIRNKPWTYIQKGVDVKIALDLVLNAYKDLYDVAILIAGDCDFLEAIKEVKALNKQVELITFDRTEKTSNVLIAETSLHNELSYTQSNKRFFITSYDDKLSQLRIKFGGN
>NC_017737.1|WP_014661333.1|1300840_1301404_-|elongation-factor-P
MAIGMSELKKGLKIELGGVPYRIVEYQHVKPGKGAAFVRAKIKSFLDGKVIEKTFHAGDKCEEPNLMEKTMQYLYHDGDAYQFMDVESYEQIALNDSQVADASKWMLEGMQVQVLLHNDKAISVDVPQVVALKIVETAPNFKGDTSSASKKPATLETGAVVQVPFHVLEGETIKVNTETEEYLEKVK
>NC_017737.1|WP_014661334.1|1301422_1302346_-|class-II-fructose-1,6-bisphosphate-aldolase
MLVNGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGFEENSPIFVQASEGAIKYLGIDMVVGMVKTMSARYPHIPVALHLDHGTTFESCQNAVKAGFTSVMIDASHYAFEENLELTSQVVTMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEEFVKKSKVDYLAPAIGTSHGAFKFKGEPKLDFERLEEVKRLTNIPLVLHGASAIPDNVRKAYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFMAEVRRIANEDKSQFDLRKFFAPAQLALKNVVKERMRLLGSSNKI
>NC_017737.1|WP_014661335.1|1302361_1303246_-|peptidyl-prolyl-cis-trans-isomerase
MKKSILSLALVSALSTTLLVAKPANTATTAKKSAPTAGVLATVDGAPITKSDFDMIKQRNPNFDFDKLKDDQKAALIDQAIRTLLVEKEAKKEKLDNTPEFKAMIDAVKKQALVEFWAKRQAEAVKKIQIPEKEMQDFYNANKDQMFVKQEAHARHILVKSEDEAKRIISELNKQPKTKVQEKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMTPDFSKAAFALMPGTYTKTPVKTEFGYHIIYLISKDKPVTYTYEQAKPTIQGMLQERRFQELMNKKIEELKKQAKIVINK
>NC_017737.1|WP_014661336.1|1303428_1304154_+|EI24-domain-containing-protein
MVSFLSLLSKGWKDFFSFRMLVINLAPVMLGVLFWSMAFYYFSDNILSYCERFLPHSWSALAHSEGFLASLWAFVFKGLVYMLIIWFVILLTLIGNVFMSIFYTPLVISYLHKKYYFQVEREEFGSVTFSIKYFLKSLIIMLVIMALLTPLYFIPIIGVFLSLIPHFLFFKNTMSLDVGSAIFKDYEKYQTLLKQYKMSHYRFCACCYLFSLIPFFNFFATLLQTILLAHYFFTLKENKDN

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Crispr_ID: NC_017737_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017737_3

1563836-1566442

TypeIII

Consensus_repeat	Method
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	PILER-CR
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	CRISPRCasFinder
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	CRT

33 spacers

csx1,csm5gr7,csm4gr5,csm3gr7,cas2,cas1

The CRISPR arrays of NC_017737_3

>merge|NC_017737|3|1563836-1566442|PILER-CR,CRISPRCasFinder,CRT
GTTTAAATCCCCTTGAACGGGTCAATCTGTAATAAATTCATCTTAGGGGTTCGCTAGTAAGAAGTCTAAATAATTAATTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTCAGTATGAATATCCTTATGATGATAAATAATCTACTCTGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTTCAAATAGAATAGGCTCTTCTGGCTCATACTTAATGCCTTGATGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTTAAAATATCAAATGCAATCTTCTCCAGAAAGCGATTATATTAAGGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATAAATATTCTAAACAGCCTCAAAGAACAACCCATCAAGTTAATGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATATTACTATAATTCTCAAGAGAAAGAGAATGAGGAAATCGCGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATCTAAAAAAGTCGCCACACAATGCGAATAATCCCTGCATGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTTCTATAGAGGAAATTGCTAATAATATTTTGAGTTATTCTGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATGGTAGCTGGATTAGAATTGATTAAGATAACTCTATAACCCAGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATGAGTTCAATGAGAAGTTATCAGAATTTGATTTCTCATTAGGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTTTAAAAGCATCAAGCACTTAAATCCACCAAAAAATAGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTAAAGAAAGAAGAGCTGCTTTAGCTAATATCCAAAATTGCGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATCCTTCTTTATCTTTACCAATAATAACGTGAGCTTGGCAAGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATCCTTCTTTATCTTTACCAATAATAACGTGAGCTTGGCAAGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATGATAGTTCAATGAAGATTTACGTTAGTAGAGCTGAAATTAAGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTCCTCATATTTACATTCACATTGACCTTCATAAAAGCACAGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTTGCTTTAATGGCTGATCATAATTATCCTATGGAGAAGGGGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTACTATAAGAGATAGGTTCTTATAGAGATTTGACTTAAATTGCGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATAGAGCTTATAAGTTCTTCACTAAAGATAAAGGTAAAGAGGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATAAATTACTTAAGAGAGGTTTTGCCTATTAGAAAAATAAATTATGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATATCTCATACTTATCATGCAGAGAGCTAATAGGGAAATAGTGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATGCAATATAATAACATGCTGAAAAGATTAAGTGTCTTAAAAGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTCTTACCCACTAAAATCATGCCCGCACTCACATAAGTGCCGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATAATGGGTTACCTTGATGGTTAAAATTATAAGTAGGTGTTCGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATGACCAACCACTAAACTTTGCAAAATGCAGTAATCAACAAAAAGCGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATGACCAACCACTAAACTTTGCAAAATGCAGTAATCAACAAAAAGCGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTTATATTAAATTCAATGTTGGAAAATACAAAGATGAAGAGTAGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTGGAGTTTATATTAAAAACGTAGAGAAAAGTAATTATCTTCGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTTGCTAAAAAGCCTTCACTATGCGCCAATGCACTCCAAGGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTTATTATGAGTAATGTTTTTGTTAGAACGGATTATAAAACGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTCACAAATTTTATTTTGTAGCTCTTGGCATTGAGACATTGTTGTGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTCTAAAGGCGTGAATTGATTAAAAATTTGTGAAATTTTAGGATAAGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAATTTCGCTTAAAAGCATTTGATAAATGCGTATTGCATAATAGCGTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT

>NC_017737|3|1|1563836-1566442|PILER-CR
GTTTAAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCATCTTAGGGGTTCGCTAGTAAGAAGTCTAAATAATTA
ATTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCAGTATGAATATCCTTATGATGATAAATAATCTACTCT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTCAAATAGAATAGGCTCTTCTGGCTCATACTTAATGCCTTGAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTAAAATATCAAATGCAATCTTCTCCAGAAAGCGATTATATTAAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AAATATTCTAAACAGCCTCAAAGAACAACCCATCAAGTTAAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	ATTACTATAATTCTCAAGAGAAAGAGAATGAGGAAATCGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	CTAAAAAAGTCGCCACACAATGCGAATAATCCCTGCAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTCTATAGAGGAAATTGCTAATAATATTTTGAGTTATTCT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GGTAGCTGGATTAGAATTGATTAAGATAACTCTATAACCCA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GAGTTCAATGAGAAGTTATCAGAATTTGATTTCTCATTAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTTAAAAGCATCAAGCACTTAAATCCACCAAAAAATA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TAAAGAAAGAAGAGCTGCTTTAGCTAATATCCAAAATTGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	CCTTCTTTATCTTTACCAATAATAACGTGAGCTTGGCAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	CCTTCTTTATCTTTACCAATAATAACGTGAGCTTGGCAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GATAGTTCAATGAAGATTTACGTTAGTAGAGCTGAAATTAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCCTCATATTTACATTCACATTGACCTTCATAAAAGCACA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTGCTTTAATGGCTGATCATAATTATCCTATGGAGAAGGG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TACTATAAGAGATAGGTTCTTATAGAGATTTGACTTAAATTGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AGAGCTTATAAGTTCTTCACTAAAGATAAAGGTAAAGAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AAATTACTTAAGAGAGGTTTTGCCTATTAGAAAAATAAATTAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	ATCTCATACTTATCATGCAGAGAGCTAATAGGGAAATAGT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GCAATATAATAACATGCTGAAAAGATTAAGTGTCTTAAAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCTTACCCACTAAAATCATGCCCGCACTCACATAAGTGCC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AATGGGTTACCTTGATGGTTAAAATTATAAGTAGGTGTTC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GACCAACCACTAAACTTTGCAAAATGCAGTAATCAACAAAAAGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GACCAACCACTAAACTTTGCAAAATGCAGTAATCAACAAAAAGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTATATTAAATTCAATGTTGGAAAATACAAAGATGAAGAGTA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TGGAGTTTATATTAAAAACGTAGAGAAAAGTAATTATCTTC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTGCTAAAAAGCCTTCACTATGCGCCAATGCACTCCAAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTATTATGAGTAATGTTTTTGTTAGAACGGATTATAAAAC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCACAAATTTTATTTTGTAGCTCTTGGCATTGAGACATTGTTGT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCTAAAGGCGTGAATTGATTAAAAATTTGTGAAATTTTAGGATAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTCGCTTAAAAGCATTTGATAAATGCGTATTGCATAATAGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT

>NC_017737|3|3|1563836-1566442|CRISPRCasFinder
GTTTAAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCATCTTAGGGGTTCGCTAGTAAGAAGTCTAAATAATTA
ATTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCAGTATGAATATCCTTATGATGATAAATAATCTACTCT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTCAAATAGAATAGGCTCTTCTGGCTCATACTTAATGCCTTGAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTAAAATATCAAATGCAATCTTCTCCAGAAAGCGATTATATTAAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AAATATTCTAAACAGCCTCAAAGAACAACCCATCAAGTTAAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	ATTACTATAATTCTCAAGAGAAAGAGAATGAGGAAATCGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	CTAAAAAAGTCGCCACACAATGCGAATAATCCCTGCAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTCTATAGAGGAAATTGCTAATAATATTTTGAGTTATTCT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GGTAGCTGGATTAGAATTGATTAAGATAACTCTATAACCCA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GAGTTCAATGAGAAGTTATCAGAATTTGATTTCTCATTAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTTAAAAGCATCAAGCACTTAAATCCACCAAAAAATA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TAAAGAAAGAAGAGCTGCTTTAGCTAATATCCAAAATTGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	CCTTCTTTATCTTTACCAATAATAACGTGAGCTTGGCAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	CCTTCTTTATCTTTACCAATAATAACGTGAGCTTGGCAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GATAGTTCAATGAAGATTTACGTTAGTAGAGCTGAAATTAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCCTCATATTTACATTCACATTGACCTTCATAAAAGCACA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTGCTTTAATGGCTGATCATAATTATCCTATGGAGAAGGG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TACTATAAGAGATAGGTTCTTATAGAGATTTGACTTAAATTGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AGAGCTTATAAGTTCTTCACTAAAGATAAAGGTAAAGAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AAATTACTTAAGAGAGGTTTTGCCTATTAGAAAAATAAATTAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	ATCTCATACTTATCATGCAGAGAGCTAATAGGGAAATAGT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GCAATATAATAACATGCTGAAAAGATTAAGTGTCTTAAAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCTTACCCACTAAAATCATGCCCGCACTCACATAAGTGCC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AATGGGTTACCTTGATGGTTAAAATTATAAGTAGGTGTTC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GACCAACCACTAAACTTTGCAAAATGCAGTAATCAACAAAAAGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GACCAACCACTAAACTTTGCAAAATGCAGTAATCAACAAAAAGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTATATTAAATTCAATGTTGGAAAATACAAAGATGAAGAGTA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TGGAGTTTATATTAAAAACGTAGAGAAAAGTAATTATCTTC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTGCTAAAAAGCCTTCACTATGCGCCAATGCACTCCAAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTATTATGAGTAATGTTTTTGTTAGAACGGATTATAAAAC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCACAAATTTTATTTTGTAGCTCTTGGCATTGAGACATTGTTGT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCTAAAGGCGTGAATTGATTAAAAATTTGTGAAATTTTAGGATAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTCGCTTAAAAGCATTTGATAAATGCGTATTGCATAATAGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT

>NC_017737|3|1|1563836-1566442|CRT
GTTTAAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCATCTTAGGGGTTCGCTAGTAAGAAGTCTAAATAATTA
ATTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCAGTATGAATATCCTTATGATGATAAATAATCTACTCT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTCAAATAGAATAGGCTCTTCTGGCTCATACTTAATGCCTTGAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTAAAATATCAAATGCAATCTTCTCCAGAAAGCGATTATATTAAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AAATATTCTAAACAGCCTCAAAGAACAACCCATCAAGTTAAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	ATTACTATAATTCTCAAGAGAAAGAGAATGAGGAAATCGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	CTAAAAAAGTCGCCACACAATGCGAATAATCCCTGCAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTCTATAGAGGAAATTGCTAATAATATTTTGAGTTATTCT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GGTAGCTGGATTAGAATTGATTAAGATAACTCTATAACCCA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GAGTTCAATGAGAAGTTATCAGAATTTGATTTCTCATTAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTTAAAAGCATCAAGCACTTAAATCCACCAAAAAATA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TAAAGAAAGAAGAGCTGCTTTAGCTAATATCCAAAATTGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	CCTTCTTTATCTTTACCAATAATAACGTGAGCTTGGCAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	CCTTCTTTATCTTTACCAATAATAACGTGAGCTTGGCAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GATAGTTCAATGAAGATTTACGTTAGTAGAGCTGAAATTAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCCTCATATTTACATTCACATTGACCTTCATAAAAGCACA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTGCTTTAATGGCTGATCATAATTATCCTATGGAGAAGGG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TACTATAAGAGATAGGTTCTTATAGAGATTTGACTTAAATTGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AGAGCTTATAAGTTCTTCACTAAAGATAAAGGTAAAGAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AAATTACTTAAGAGAGGTTTTGCCTATTAGAAAAATAAATTAT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	ATCTCATACTTATCATGCAGAGAGCTAATAGGGAAATAGT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GCAATATAATAACATGCTGAAAAGATTAAGTGTCTTAAAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCTTACCCACTAAAATCATGCCCGCACTCACATAAGTGCC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	AATGGGTTACCTTGATGGTTAAAATTATAAGTAGGTGTTC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GACCAACCACTAAACTTTGCAAAATGCAGTAATCAACAAAAAGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	GACCAACCACTAAACTTTGCAAAATGCAGTAATCAACAAAAAGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTATATTAAATTCAATGTTGGAAAATACAAAGATGAAGAGTA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TGGAGTTTATATTAAAAACGTAGAGAAAAGTAATTATCTTC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTGCTAAAAAGCCTTCACTATGCGCCAATGCACTCCAAG
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTATTATGAGTAATGTTTTTGTTAGAACGGATTATAAAAC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCACAAATTTTATTTTGTAGCTCTTGGCATTGAGACATTGTTGT
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TCTAAAGGCGTGAATTGATTAAAAATTTGTGAAATTTTAGGATAA
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT	TTCGCTTAAAAGCATTTGATAAATGCGTATTGCATAATAGC
GTTTCAATCCCCTTGAACGGGTCAATCTGTAATAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_017737.1\|WP_014661553.1\|1555706_1556747_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NC_017737.1\|WP_014661556.1\|1558856_1560359_+\|CRISPR-associated-DxTHG-motif-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|378186
NC_017737.1\|WP_014661572.1\|1574124_1574970_-\|hypothetical-protein	unknown	unknown	unknown
NC_017737.1\|WP_014661571.1\|1573117_1573906_-\|spermidine-synthase	unknown	unknown	gnl\|CDD\|134311
NC_017737.1\|WP_014661560.1\|1562334_1562610_-\|hypothetical-protein	unknown	unknown	unknown
NC_017737.1\|WP_014661567.1\|1568804_1569485_-\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|223433
NC_017737.1\|WP_014661557.1\|1560546_1560759_-\|hypothetical-protein	unknown	unknown	unknown
NC_017737.1\|WP_081478664.1\|1557638_1558844_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NC_017737.1\|WP_014661566.1\|1568206_1568794_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|238317
NC_017737.1\|WP_014661559.1\|1561546_1561981_-\|hypothetical-protein	unknown	unknown	unknown
NC_017737.1\|WP_014661565.1\|1567161_1568118_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_017737.1\|WP_014661558.1\|1561087_1561537_-\|hypothetical-protein	unknown	unknown	unknown
NC_017737.1\|WP_014661554.1\|1556748_1557654_+\|crispr-associated-protein,-csm4-family	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|273866
NC_017737.1\|WP_014661569.1\|1571072_1572434_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572
NC_017737.1\|WP_014661562.1\|1563230_1563527_-\|hypothetical-protein	unknown	unknown	unknown
NC_017737.1\|WP_014661564.1\|1566885_1567161_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|378256
NC_017737.1\|WP_014661568.1\|1569613_1571059_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NC_017737.1\|WP_014661573.1\|1575045_1576467_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NC_017737.1\|WP_014661570.1\|1572505_1573099_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NC_017737.1\|WP_014661561.1\|1562625_1562994_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_017737.1\|WP_014661553.1\|1555706_1556747_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	8.386e-54
NC_017737.1\|WP_014661556.1\|1558856_1560359_+\|CRISPR-associated-DxTHG-motif-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	2.17509e-08
NC_017737.1\|WP_014661571.1\|1573117_1573906_-\|spermidine-synthase	gnl\|CDD\|134311	PRK00536, speE, spermidine synthase; Provisional.	9.27638e-145
NC_017737.1\|WP_014661570.1\|1572505_1573099_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	3.37804e-75
NC_017737.1\|WP_081478664.1\|1557638_1558844_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.13709e-14
NC_017737.1\|WP_014661564.1\|1566885_1567161_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.75833e-19
NC_017737.1\|WP_014661569.1\|1571072_1572434_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
NC_017737.1\|WP_014661554.1\|1556748_1557654_+\|crispr-associated-protein,-csm4-family	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	0.000151116
NC_017737.1\|WP_014661567.1\|1568804_1569485_-\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|223433	COG0356, AtpB, F0F1-type ATP synthase, subunit a [Energy production and conversion].	3.60968e-56
NC_017737.1\|WP_014661566.1\|1568206_1568794_-\|thiamine-phosphate-synthase	gnl\|CDD\|238317	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.	5.68164e-13
NC_017737.1\|WP_014661565.1\|1567161_1568118_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	9.49367e-64
NC_017737.1\|WP_014661568.1\|1569613_1571059_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NC_017737.1\|WP_014661573.1\|1575045_1576467_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0

>NC_017737.1|WP_014661562.1|1563230_1563527_-|hypothetical-protein
MADGFSVNVNTNTIVLEIIKDFHEDGLYDKIANKLLSRLALNIDEYESTLDFNIYSKGKVNFDFSANAQNYLLLNYDSLAGIRGLFNTNCSVMVSYSW
>NC_017737.1|WP_014661561.1|1562625_1562994_-|hypothetical-protein
MGECYKYWFLMWVVMLILSNRLNGKGLTFDYKTNTITLEIVGLFKAKSKLNAIVTQISRHVQLNIDIDDSSSLSYNLYHSEKLTISLMVSADTYLINNFSTIDKAFIGLFNENGYITTEYHW
>NC_017737.1|WP_014661560.1|1562334_1562610_-|hypothetical-protein
MQKIFVLLVLVGGLLASPSTKNELSQKDVNIQKWTNSDLGGENYLFWKGYQTCLKAHDTRTCLKMAKMVLEMGKNKGNTYALWVMFLNKEF
>NC_017737.1|WP_014661559.1|1561546_1561981_-|hypothetical-protein
MSYAKVVSAVAPMVIESGVGFVGQYLKYRTESKNIKLERHKVDKQAKIMLASLKEDTKRFSKQCHAFEKHSKDRKQEHLSNLAFWKGQLKKSSSIEERSKIMEMVFNLQCMALSNVESKALDELLKASKSAPVALSDAKKLLSK
>NC_017737.1|WP_014661558.1|1561087_1561537_-|hypothetical-protein
MWRLIAIGGVIIAGIAALILEHEKSNIEKERTKTQNAKKKTSKKVKNAIVKNKQYKKQRMEQLIKVELDKIKKWLDEYNNTLFIYKNERNMLFKELDKTRDKAQRSKIFQKIHKLGEERKILFARRDEIFLARDKLHAKLRTLRSHQRS
>NC_017737.1|WP_014661557.1|1560546_1560759_-|hypothetical-protein
MQQKDGASLDYDNGKISMSFVGNTAIFVAGAVVAVGCVYVGFVLAGATGGVAVASGVAKGITHGITRFRG
>NC_017737.1|WP_014661556.1|1558856_1560359_+|CRISPR-associated-DxTHG-motif-protein
MNDNNNISKGRKAIITILRPKIDRPITYKIKTESGKYSEYEELYNMFGYFLETKETFYKDYDLIPLYTKQALTTCKRQIGEKEIQYNDDETQRLIITSESHNFIKEGYYIEDEEDEKGFAKIFSFINKILSSNKYNQVIVDVTHGFRHLPMLILVDLIIQNFQNTSKVEKILYAKTIGDEKENKYEIIDLKDYLDIANIMFVVSSFKHNFTTSNIEVSSKYSGFINSLCEVSNDLLSLNINHLTKQDGQGSANKLLKDIQKLQEELEKETQNKEHFLINPLKDLAEFVKGLINFEGKKYYQTYLELSEIFYERDYLINSIALLCESARYFIKTQLKRECSEDLTNKIESIEDNLDTYETLRFFSGLSRIAKNRDGNYIEDPRDPNSSQYLSKFAWSEERVIIRGKERRIEANEKVKNRVIKNTFQNRDSQNSDDYNVLREKCMAINGTLSKVSMLSDEIDDLRNKLVHINPNNDFDEIKKQINEKIERYKEIINEDTPTN
>NC_017737.1|WP_081478664.1|1557638_1558844_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MFKRIKMPNKAHKTIYKYKVSVLSPIHIGSGNSFELNYNMFYKNNSLYLCDEFKLMDYFLTKNPKLEYFEKEKMLLKFTEFIKNSKEIPFIRKIENNFILRNKPLLEHISSQVIKDNQILSLPYIPGSSIKGGLRTAILNGIVPGKENNKIIFNQTRNSDCQKIFNALDNKKFFKNNSLNKDRFKPNDEDFINVFKDLYISDSQSLKTKVYQSINMKKLKDHQDKRKNGNIERCKNFLECIIPEQTFEITITDKNSNKIFENLDNICTDFYKKWFEEEDYYFLDKDNKKEKDSKEEKDENKKNEYYNFLNKEQWSIIKEKVEKTKNGFLLNVGRFSGAERKTLNDYRRIQNSKAFNKDNKKDTSTTSARTYVLSSPKEVTNEKFYTNKLLPFGWLLFEKIN
>NC_017737.1|WP_014661554.1|1556748_1557654_+|crispr-associated-protein,-csm4-family
MLELFAYEITPLSSFATSPKGDTLFGQILSYLYLEDKHFFKSYFGDYCGENKKPPKLIVSDMMPLGYVYKPSLPFYCFDENDKKEFKKKEFILLKHLQRGELDGIKEIKYKTEPVIKNQINRLTFSTQERFDPYSSIEITYTTKLWLFVLVEVSIKEKIEKILEKIGEYGFGKGSSTGKGRFKLGMCCPIPINKKRNTEDKQLFYMSLSPTILIDDNIQNAWYEPFTRFGKFGLENAHDNFMKKPVLMADSGAVIQTKEPLKELYYFGTCLDNGYENKHSFLQGYSIAVPFILENEACLKG
>NC_017737.1|WP_014661553.1|1555706_1556747_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MTQKTIKTTIKLLSGLHIGGSDDTMKIGGIDNSVIKREILSDDDGNIVYTGGKKITEPYIPGSSLKGKMRSLLEYAFGLIKEQSEIFKGEDKKDIGKPIDSKFVAKCRDRVRDRDDENLQKLQKKAQLIIALFGESADNKNDGSSSSNKVDDNATKNKTTKITRAIFRDSFLTNTMRKLYIEDKIKLTEPKAENTIDRIDSSANPRFMERVPSGLEFDCEIVLRDFGFDDDFLQLLFKNTLHLGLLLLQNDYLGGGGSRGSGRVEFFCEEKLKKIIHNASDAIKKLEDQKNKNGTINDAEHKDSDNQKTELTTLQQAIQKQQILIGCQLELLNSDLSLKKNCKVEH
>NC_017737.1|WP_014661564.1|1566885_1567161_-|CRISPR-associated-endonuclease-Cas2
MKFLITYDIIHNKKRKLLAEELEKHGTRVNLSVFECELTETKFKQLVFKIKKMIRSKNGNVRFYRLCSNCEDKSFEIGEKRGIFKPYDDFI
>NC_017737.1|WP_014661565.1|1567161_1568118_-|CRISPR-associated-endonuclease-Cas1
MSLCIATFGVNLSLSKDKLIAKKQGKIIQQTPLNKLEQIIIENPSTNLSSLVIYACAKRKIPIIFIEDLKPLATIFTYQASNTQIIHKQSLLLHTSKHLYLAKQFIRSKSLNQLNFLKYLNKYHKNLDEIIFKMQSLTPKVSKAKEVSELFGIEGIISANYWQGISQVIKLPFKRVKKGANDAYNSAFNYAYAILYSKVQVYLLQAGLSLHISFLHAINSLKPTLVFDVIEEFRTFMVDRVIVSMINKKESLRLDDNKRLSLESRKRISQNMRQKFQSLSTYKKQPLTCEKIIELECNALAKFIQEDSKSYKPFIGKY
>NC_017737.1|WP_014661566.1|1568206_1568794_-|thiamine-phosphate-synthase
MQGYFIVPPLLYSSNPTKIFIKTLEKIFSTHVINKACLRNDCNLIQNYLKPFVEICKTYEVESYINCEEAFLSVKIALDYSFEGVHFKDRFYPNFEPLKRLLNTLKAHNKRCFYSAHSIECARYMLKNKIDYVTLSPIFLTPNKGKPLGLEVFKHFNDMEKSRLFALGGIITQGQIDCLRGQGIGGFSAIRYFLQ
>NC_017737.1|WP_014661567.1|1568804_1569485_-|F0F1-ATP-synthase-subunit-A
MEHRLFTFANLFSSNHDFITGFYVIVCALITLFISVLATHKMQMVPIGLQNVYETIISAILGVAKDIIGEKLARKYFPLAGTIALYVFFCNILGIIPGFEAPTASWSFTLVLALIVFFYYHFEGIRQHGVLKYFAHFMGPVKWLAPFMFPIEIISHFSRIVSLSFRLFGNIKGDDMFLLIMLLLVPWVVPVAPFMVLFFMGILQAFVFMILTYVYLAGAVLVDEEH
>NC_017737.1|WP_014661568.1|1569613_1571059_-|IMP-dehydrogenase
MRILQKALTFEDVLMVPRKSSVLPKDVSLKSRLTKNISLNIPFISAAMDTVTEHKTAIAMARLGGIGIVHKNMDIDTQVKEIAKVKKSESGVINDPIFIQANRTLADAKAITDNYKISGVPVVDENGLLIGILTNRDVRFENDLSKKVGDVMTKMPLVTAHVGISLEEARILMHQHKIEKLPIVDKNNVLKGLITIKDIHKRIEYPDANKDDFGRLRVGAAIGAGQLDRAEMLVKAGVDVLVLDSAHGHSMNILHTLEEIKKSLVVDVIVGNVVTKEATNDLISAGADAVKVGIGPGSICTTRIVAGVGMPQVSAIDNCVEVASKFDIPIIADGGIRYSGDVAKALALGASSVMIGSLLAGTEESPGDFMIYQGRQYKSYRGMGSIGAMTKGSSDRYFQEGVASEKLVPEGIEGRVPYRGKVSDMIFQLVGGVRSSMGYQGAKNIQELYENAEFVEITTAGLKESHVHDVDITKEAPNYYG
>NC_017737.1|WP_014661569.1|1571072_1572434_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MITLKQALSLSKQELETLKSEIDTKVKASDLNAYIKAPSINGASSSGVPILIKDNINVKGWEITCSSKILEGYVAPYDASVIENLHANNMAGFGLSNMDEFAMGSTTESSCYGITKNPRDKNRVPGGSSGGSAAAVAGGLAIAALGSDTGGSIRQPASYCGCVGLKPTYGRVSRYGLIAYCSSFDQIGPITQNVEDASILLDAISGHDNKDSTSANLKPTQTFKNLDKDKRFKIAVLKDHIKDASKEVQLAYENTLKVLKEMGHEIVEKDMLDSHYQISIYYIISTAEACSNLARFDGVRYGKRAENVKDLKELYIKSRSEGFGDEVKRRIMLGNFVLSSGYYDAYYVKAQQVRSMIKEQYNKIFEDVDLIFTPVAPTTAPLFNHHASPLDMYLSDIYTIGANLSGLPALSLPIAKDSMGLPIGMQFVAKAFDEQSLLDVSYALEQELSLKFD
>NC_017737.1|WP_014661570.1|1572505_1573099_-|dephospho-CoA-kinase
MEFALKNAIALTGGIGTGKSTTARLLELHGYKVLDADKIAHKLLGENQLEIAKYFGEEILENNTLNRKKLGAIVFNDKTKLEWLEKFLHPLIREMMLKEALLLDALNKPYFLDIPLFFEVGGKSSYPIKSVLLVYAPRALQIKRVLERDKLKEVEILQRLECQMDIEKKRSLSDYVIDNSATLKELQYYLERFLETL
>NC_017737.1|WP_014661571.1|1573117_1573906_-|spermidine-synthase
MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLNHQLLFKNFLHIESELLAHIGGCTKQEVKNTLIVGGFDLELAHQLFKHGTNIDFVQEDEKILDSFISFFPHFHAVKNNERFTHAKKLLDLEIKKYDVIFCLEEPNKHQLDALSRMLEKDGVLIAVAKHPLLGHEGMEQALRNAGEFFSIAMPFVAPLRILSNKGYIYASSSVHPLADLWLQKVDMLEGVKYYNEDIHRASFALPKNLEETFRGISKN
>NC_017737.1|WP_014661572.1|1574124_1574970_-|hypothetical-protein
MFLGLKNLSVIVVFMGCFLSCSQEGFLNMQKRMHAHEYDGSKRPDYVGSDYEVFSETLYLRGAMPYKMAHYVNLNYGYNSSSFNEENSNVSLVSYPLLNETQKKPSEEVTNFPKTHKNATKIEYSQQSFYPLNLKEVRLLKNAHNQFLIEVKSKALKRFLKEGNRGYRERQIQTFAFDNTATQITHFKGKIASYIHTKNKNNLNSKAQYNEFRLEKTSTNFYMIKTKKALSFSNLQKCQFVFKKKASDKFDNQHKEISIDLDFRQRVGFKTYAELFLECYK
>NC_017737.1|WP_014661573.1|1575045_1576467_+|ribosome-biogenesis-GTPase-Der
MKKHNKTLKTIAILGQPNVGKSSLFNRLAKERIAITSDFAGTTRDINKRKILLNEKEVEILDTGGIHKDAILSKEIKAINLKAAQMSDLILYVVDGKTIPEDSDIKLFREIFKINPNCFLVINKIDNDKEKEKAYAFASFGVSSHRSFNISVSHNRGINALINAILLELNLLVNLEEDDDLDILESLEVPTINENLENEELEDENEEEIIQVGIIGRVNVGKSSLLNALTQKERSIVSNLAGTTIDPIDETILVNNQKICFVDTAGIRHRGKIEGIEKYALERTKKALEKSHIVLLVLDVSAPFVELDEKISSLADKHSLGIILILNKWDIRYAPYEEIIATLKRKFRFLEYAPIITTSCLESRHINEIKTKILEVYEQFSKRIPTSLLNQTILKATQRHPLPSDHGKLVKIYYATQFATKPPQFSIVMNRPKSLHFSYKRYLINTLRKEFNFLGTPLIINAKDKKGANKEQN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_017737_3	3.7\|1564344\|38\|NC_017737\|PILER-CR,CRISPRCasFinder,CRT	1564344-1564381	38	NC_017737.1	652082-652119	0	1.0
NC_017737_3	3.23\|1565576\|40\|NC_017737\|PILER-CR,CRISPRCasFinder,CRT	1565576-1565615	40	NC_017737.1	1887484-1887523	0	1.0
NC_017737_3	3.29\|1566049\|39\|NC_017737\|PILER-CR,CRISPRCasFinder,CRT	1566049-1566087	39	NC_017737.1	1303598-1303636	0	1.0
NC_017737_3	3.32\|1566283\|45\|NC_017737\|PILER-CR,CRISPRCasFinder,CRT	1566283-1566327	45	NC_017737.1	1536632-1536676	0	1.0
NC_017737_3	3.33\|1566365\|41\|NC_017737\|PILER-CR,CRISPRCasFinder,CRT	1566365-1566405	41	NC_017738.1	5502-5542	0	1.0
NC_017737_3	3.9\|1564496\|41\|NC_017737\|PILER-CR,CRISPRCasFinder,CRT	1564496-1564536	41	NC_017737.1	1252492-1252532	2	0.951

1. spacer 3.7|1564344|38|NC_017737|PILER-CR,CRISPRCasFinder,CRT matches to position: 652082-652119, mismatch: 0, identity: 1.0

ctaaaaaagtcgccacacaatgcgaataatccctgcat	CRISPR spacer
ctaaaaaagtcgccacacaatgcgaataatccctgcat	Protospacer
**************************************

2. spacer 3.23|1565576|40|NC_017737|PILER-CR,CRISPRCasFinder,CRT matches to position: 1887484-1887523, mismatch: 0, identity: 1.0

tcttacccactaaaatcatgcccgcactcacataagtgcc	CRISPR spacer
tcttacccactaaaatcatgcccgcactcacataagtgcc	Protospacer
****************************************

3. spacer 3.29|1566049|39|NC_017737|PILER-CR,CRISPRCasFinder,CRT matches to position: 1303598-1303636, mismatch: 0, identity: 1.0

ttgctaaaaagccttcactatgcgccaatgcactccaag	CRISPR spacer
ttgctaaaaagccttcactatgcgccaatgcactccaag	Protospacer
***************************************

4. spacer 3.32|1566283|45|NC_017737|PILER-CR,CRISPRCasFinder,CRT matches to position: 1536632-1536676, mismatch: 0, identity: 1.0

tctaaaggcgtgaattgattaaaaatttgtgaaattttaggataa	CRISPR spacer
tctaaaggcgtgaattgattaaaaatttgtgaaattttaggataa	Protospacer
*********************************************

5. spacer 3.33|1566365|41|NC_017737|PILER-CR,CRISPRCasFinder,CRT matches to position: 5502-5542, mismatch: 0, identity: 1.0

ttcgcttaaaagcatttgataaatgcgtattgcataatagc	CRISPR spacer
ttcgcttaaaagcatttgataaatgcgtattgcataatagc	Protospacer
*****************************************

6. spacer 3.9|1564496|41|NC_017737|PILER-CR,CRISPRCasFinder,CRT matches to position: 1252492-1252532, mismatch: 2, identity: 0.951

ggtagctggattagaattgattaagataactctataaccca	CRISPR spacer
ggtggcgggattagaattgattaagataactctataaccca	Protospacer
***.** **********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_017737_3	3.33\|1566365\|41\|NC_017737\|PILER-CR,CRISPRCasFinder,CRT	1566365-1566405	41	NC_017738	Helicobacter cetorum MIT 00-7128 plasmid pHCW, complete sequence	5502-5542	0	1.0
NC_017737_3	3.33\|1566365\|41\|NC_017737\|PILER-CR,CRISPRCasFinder,CRT	1566365-1566405	41	NC_017736	Helicobacter cetorum MIT 99-5656 plasmid pHCD, complete sequence	9660-9700	2	0.951
NC_017737_3	3.11\|1564651\|37\|NC_017737\|PILER-CR,CRISPRCasFinder,CRT	1564651-1564687	37	NZ_CP041064	Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence	84504-84540	8	0.784
NC_017737_3	3.11\|1564651\|37\|NC_017737\|PILER-CR,CRISPRCasFinder,CRT	1564651-1564687	37	NZ_CP018876	Bacillus megaterium strain JX285 plasmid 3, complete sequence	130066-130102	8	0.784
NC_017737_3	3.11\|1564651\|37\|NC_017737\|PILER-CR,CRISPRCasFinder,CRT	1564651-1564687	37	CP041518	Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence	106146-106182	8	0.784

1. spacer 3.33|1566365|41|NC_017737|PILER-CR,CRISPRCasFinder,CRT matches to NC_017738 (Helicobacter cetorum MIT 00-7128 plasmid pHCW, complete sequence) position: , mismatch: 0, identity: 1.0

ttcgcttaaaagcatttgataaatgcgtattgcataatagc	CRISPR spacer
ttcgcttaaaagcatttgataaatgcgtattgcataatagc	Protospacer
*****************************************

2. spacer 3.33|1566365|41|NC_017737|PILER-CR,CRISPRCasFinder,CRT matches to NC_017736 (Helicobacter cetorum MIT 99-5656 plasmid pHCD, complete sequence) position: , mismatch: 2, identity: 0.951

ttcgcttaaaagcatttgataaatgcgtattgcataatagc	CRISPR spacer
ctcgcttaaaagcatttgataaatgcgtatcgcataatagc	Protospacer
.*****************************.**********

3. spacer 3.11|1564651|37|NC_017737|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041064 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence) position: , mismatch: 8, identity: 0.784

tttaaaagcatcaagcacttaaatccaccaaaaaata	CRISPR spacer
ttttgatactccaagcacttgaaaccaccaaaaaata	Protospacer
*** .* .* .*********.** *************

4. spacer 3.11|1564651|37|NC_017737|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018876 (Bacillus megaterium strain JX285 plasmid 3, complete sequence) position: , mismatch: 8, identity: 0.784

tttaaaagcatcaagcacttaaatccaccaaaaaata	CRISPR spacer
ttttgatactccaagcacttgaaaccaccaaaaaata	Protospacer
*** .* .* .*********.** *************

5. spacer 3.11|1564651|37|NC_017737|PILER-CR,CRISPRCasFinder,CRT matches to CP041518 (Bacillus aryabhattai strain KNU10 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.784

tttaaaagcatcaagcacttaaatccaccaaaaaata	CRISPR spacer
ttttgatactccaagcacttgaaaccaccaaaaaata	Protospacer
*** .* .* .*********.** *************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

579495 : 585968

Helicobacter_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014660705.1\|579495_580056_+	hypothetical protein	A0A1S5RG34	Helicobacter_phage	6.2e-42	52.4
WP_014660706.1\|580076_581273_+	DUF4043 family protein	A0A1S5RFW9	Helicobacter_phage	8.2e-108	49.0
WP_014660707.1\|581288_581714_+	hypothetical protein	A0A1S5RFY0	Helicobacter_phage	7.3e-11	34.5
WP_014660708.1\|581772_581979_+	hypothetical protein	NA	NA	NA	NA
WP_014660709.1\|582145_582358_+	hypothetical protein	NA	NA	NA	NA
WP_014660710.1\|582716_583091_+	hypothetical protein	I6P4U9	Helicobacter_phage	3.1e-05	52.9
WP_014660711.1\|583267_583468_+	hypothetical protein	NA	NA	NA	NA
WP_155802217.1\|583871_584009_+	hypothetical protein	NA	NA	NA	NA
WP_014660713.1\|584194_584593_+	hypothetical protein	A0A1S5RFF3	Helicobacter_phage	2.1e-20	45.8
WP_014660714.1\|584589_585180_+	hypothetical protein	A0A1S5RG30	Helicobacter_phage	5.2e-47	51.5
WP_014660715.1\|585176_585968_+	hypothetical protein	A0A1S5RFY9	Helicobacter_phage	1.3e-69	56.1

DBSCAN-SWA_2

595654 : 602379

Helicobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014660727.1\|595654_597424_+	hypothetical protein	A0A1S5RG25	Helicobacter_phage	4.7e-237	69.4
WP_014660728.1\|597441_597627_+	hypothetical protein	NA	NA	NA	NA
WP_014660729.1\|597631_598645_+	hypothetical protein	NA	NA	NA	NA
WP_014660730.1\|598682_598967_+	virulence associated protein VapD	NA	NA	NA	NA
WP_014660731.1\|599058_599958_+	hypothetical protein	A0A1S5RG06	Helicobacter_phage	1.1e-21	35.4
WP_014660732.1\|599959_600817_+	hypothetical protein	A0A1S5RFQ0	Helicobacter_phage	8.6e-43	45.2
WP_014660733.1\|600817_601594_+	putative DNA-binding transcriptional regulator	A0A1S5RFH0	Helicobacter_phage	1.9e-41	40.4
WP_014660734.1\|601664_602171_+	hypothetical protein	A0A1S5RFX9	Helicobacter_phage	8.4e-54	62.9
WP_014660735.1\|602139_602379_+	hypothetical protein	A0A1S5RG40	Helicobacter_phage	7.2e-16	57.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_017738

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_017737

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection