CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015613	Serratia plymuthica PRI-2C chromosome, complete genome	2 crisprs	cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DEDDh,RT,WYL,DinG,csa3,cas3,c2c9_V-U4	0	11	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015613_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015613_1

453987-454915

TypeI-F

I-F

Consensus_repeat	Method
GTGCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAA	CRT

15 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP015613_1

>merge|NZ_CP015613|1|453987-454915|PILER-CR,CRISPRCasFinder,CRT
GTGCACTGCCGTACAGGCAGCTTAGAAATCAGAGGTTTGGGTGACCTGGAACCCTGAAAAGTGCACTGCCGTACAGGCAGCTTAGAAACTTAGTAAAGGGGTATTGCTATCCCATGAATCGTGCACTGCCGTACAGGCAGCTTAGAAATATGAGCGTGAAAGTCTCAAGTTACGTCTGGGGTGCACTGCCGTACAGGCAGCTTAGAAATGGTAACCGGCTCTCGGTATCAGACCTCGAAAGTGCACTGCCGTACAGGCAGCTTAGAAATCCGCCGGTGCCGGCCGGTGTTGCAGTTATTTGTGCACTGCCGTACAGGCAGCTTAGAAAAGTGTCATCGGCATTGTAGGCACGGCACCGAGGTGCACTGCCGTACAGGCAGCTTAGAAAGGGCGCGATTGGTGGGGTTTCTACTCACACGCGTGCACTGCCGTACAGGCAGCTTAGAAATAAATCCGCAGCGAGCTGTGTCGGGTTTATCGGTGCACTGCCGTACAGGCAGCTTAGAAAGGGTTAATCGTACTTATTTAGTTCATATCGGGGGTGCACTGCCGTACAGGCAGCTTAGAAAGACGCGGGACTCAGAACAAATCGAACATCTACGTGCACTGCCGTACAGGCAGCTTAGAAAGTAAACGGTATGTACCGCCGCCGCTTGCACCCGTGCACTGCCGTACAGGCAGCTTAGAAATTACGGTTCGATATCAGACGGCTAAGTCGGGCGTGCACTGCCGTACAGGCAGCTTAGAAATGGCTTGGCTGGCCCTGGTAGCTTGACGCCCTGTGCACTGCCGTACAGGCAGCTTAGAAAAATTGTAATTCAATGGTTCCCGTCTTCGGATCGTGCACTGCCGTACAGGCAGCTTAGAAATTGATATCGTTGCGGGTGGAGATAGTCCCCATGTGCACTGCCGCACAGGCAGTCGTGATC

>NZ_CP015613|1|1|453987-454855|PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCAGAGGTTTGGGTGACCTGGAACCCTGAAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	CTTAGTAAAGGGGTATTGCTATCCCATGAATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TATGAGCGTGAAAGTCTCAAGTTACGTCTGGG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGTAACCGGCTCTCGGTATCAGACCTCGAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCCGCCGGTGCCGGCCGGTGTTGCAGTTATTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGTGTCATCGGCATTGTAGGCACGGCACCGAG
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGGCGCGATTGGTGGGGTTTCTACTCACACGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TAAATCCGCAGCGAGCTGTGTCGGGTTTATCG
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGGTTAATCGTACTTATTTAGTTCATATCGGGG
GTGCACTGCCGTACAGGCAGCTTAGAAA	GACGCGGGACTCAGAACAAATCGAACATCTAC
GTGCACTGCCGTACAGGCAGCTTAGAAA	GTAAACGGTATGTACCGCCGCCGCTTGCACCC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTACGGTTCGATATCAGACGGCTAAGTCGGGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGCTTGGCTGGCCCTGGTAGCTTGACGCCCT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AATTGTAATTCAATGGTTCCCGTCTTCGGATC
GTGCACTGCCGTACAGGCAGCTTAGAAA

>NZ_CP015613|1|1|453987-454915|CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCAGAGGTTTGGGTGACCTGGAACCCTGAAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	CTTAGTAAAGGGGTATTGCTATCCCATGAATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TATGAGCGTGAAAGTCTCAAGTTACGTCTGGG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGTAACCGGCTCTCGGTATCAGACCTCGAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCCGCCGGTGCCGGCCGGTGTTGCAGTTATTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGTGTCATCGGCATTGTAGGCACGGCACCGAG
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGGCGCGATTGGTGGGGTTTCTACTCACACGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TAAATCCGCAGCGAGCTGTGTCGGGTTTATCG
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGGTTAATCGTACTTATTTAGTTCATATCGGGG
GTGCACTGCCGTACAGGCAGCTTAGAAA	GACGCGGGACTCAGAACAAATCGAACATCTAC
GTGCACTGCCGTACAGGCAGCTTAGAAA	GTAAACGGTATGTACCGCCGCCGCTTGCACCC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTACGGTTCGATATCAGACGGCTAAGTCGGGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGCTTGGCTGGCCCTGGTAGCTTGACGCCCT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AATTGTAATTCAATGGTTCCCGTCTTCGGATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTGATATCGTTGCGGGTGGAGATAGTCCCCAT
GTGCACTGCCGCACAGGCAGTCGTGATC

>NZ_CP015613|1|1|453987-454915|CRT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCAGAGGTTTGGGTGACCTGGAACCCTGAAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	CTTAGTAAAGGGGTATTGCTATCCCATGAATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TATGAGCGTGAAAGTCTCAAGTTACGTCTGGG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGTAACCGGCTCTCGGTATCAGACCTCGAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCCGCCGGTGCCGGCCGGTGTTGCAGTTATTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGTGTCATCGGCATTGTAGGCACGGCACCGAG
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGGCGCGATTGGTGGGGTTTCTACTCACACGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TAAATCCGCAGCGAGCTGTGTCGGGTTTATCG
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGGTTAATCGTACTTATTTAGTTCATATCGGGG
GTGCACTGCCGTACAGGCAGCTTAGAAA	GACGCGGGACTCAGAACAAATCGAACATCTAC
GTGCACTGCCGTACAGGCAGCTTAGAAA	GTAAACGGTATGTACCGCCGCCGCTTGCACCC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTACGGTTCGATATCAGACGGCTAAGTCGGGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGCTTGGCTGGCCCTGGTAGCTTGACGCCCT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AATTGTAATTCAATGGTTCCCGTCTTCGGATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTGATATCGTTGCGGGTGGAGATAGTCCCCAT
GTGCACTGCCGCACAGGCAGTCGTGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015613.1\|WP_065505801.1\|460658_461624_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP015613.1\|WP_065505800.1\|459324_460662_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP015613.1\|WP_065505807.1\|466670_467273_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|132351
NZ_CP015613.1\|WP_065505794.1\|450378_451257_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP015613.1\|WP_065505806.1\|465875_466658_-\|phosphonate-metabolism-protein-PhnP	unknown	unknown	gnl\|CDD\|183052
NZ_CP015613.1\|WP_065505803.1\|462639_463194_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP015613.1\|WP_065505795.1\|451268_452264_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP015613.1\|WP_065505793.1\|450105_450309_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015613.1\|WP_065505797.1\|453496_453799_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP015613.1\|WP_065505802.1\|461636_462629_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP015613.1\|WP_065505790.1\|446980_448120_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP015613.1\|WP_065505798.1\|455044_456025_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP015613.1\|WP_065505796.1\|453006_453510_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP015613.1\|WP_062791109.1\|452491_453013_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP015613.1\|WP_065505789.1\|445829_446984_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP015613.1\|WP_065505805.1\|465286_465925_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP015613.1\|WP_065505792.1\|449735_450059_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015613.1\|WP_065505791.1\|448473_448746_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015613.1\|WP_065505804.1\|464809_465238_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP015613.1\|WP_065505799.1\|456021_459297_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804

Protein	Function_ID	Function_description	E-value
NZ_CP015613.1\|WP_065505801.1\|460658_461624_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.78926e-141
NZ_CP015613.1\|WP_065505800.1\|459324_460662_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	2.29005e-177
NZ_CP015613.1\|WP_065505807.1\|466670_467273_-\|acetyltransferase	gnl\|CDD\|132351	TIGR03308, phn_thr-fam, phosphonate metabolism protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.	7.18773e-85
NZ_CP015613.1\|WP_065505806.1\|465875_466658_-\|phosphonate-metabolism-protein-PhnP	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	8.30317e-157
NZ_CP015613.1\|WP_065505803.1\|462639_463194_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.07356e-92
NZ_CP015613.1\|WP_065505795.1\|451268_452264_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.68303e-114
NZ_CP015613.1\|WP_065505794.1\|450378_451257_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP015613.1\|WP_065505797.1\|453496_453799_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	1.47648e-40
NZ_CP015613.1\|WP_065505802.1\|461636_462629_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP015613.1\|WP_065505790.1\|446980_448120_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.70687e-23
NZ_CP015613.1\|WP_065505798.1\|455044_456025_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP015613.1\|WP_065505796.1\|453006_453510_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	4.02654e-57
NZ_CP015613.1\|WP_062791109.1\|452491_453013_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	2.02811e-69
NZ_CP015613.1\|WP_065505789.1\|445829_446984_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	5.50466e-19
NZ_CP015613.1\|WP_065505805.1\|465286_465925_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.14204e-66
NZ_CP015613.1\|WP_065505804.1\|464809_465238_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	3.94157e-94
NZ_CP015613.1\|WP_065505799.1\|456021_459297_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0

>NZ_CP015613.1|WP_065505797.1|453496_453799_-|GIY-YIG-nuclease-family-protein
MDIPTWHLYMLRLPNGMLYTGITTDVVRRLAQHQAGKGAKALRGKGELTLAFHCRVGDRSTALRLEYRVKQLSKIQKERLVSHPPPSLDYLLPSAEVKTG
>NZ_CP015613.1|WP_065505796.1|453006_453510_+|N-acetyltransferase
MLIRVEIPVDAAGIDALLRRAFGRDDEADLVQQLREDGLLTLGIVATDDEGGVVGYAAFSPVDVAGEDRQWVGLAPLAVDESLRRQGLGEKLIYEGLDSLNEFSYAAVVVLGDPAYYGRFGFKPAAAYGLRCRWPGAEAAFQVYPLAEDALSDASGAVEYSEPFNRF
>NZ_CP015613.1|WP_062791109.1|452491_453013_+|SCP2-domain-containing-protein
MLEQLRARIVRQGPSLLRVPLKFTPFALQRQLLEQVLGWQFRQALADGDLAFLESRWLKIEVRDLALHWFMTVENDKLVVSHHAEADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELEAMPAPLRIGLLQLAEFVEAGLQEGTAQTSRVPVAC
>NZ_CP015613.1|WP_065505795.1|451268_452264_-|U32-family-peptidase
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVEYVHRHRRKLHIAINTFAHPDGYGRWQRAVDMAAQLGADVLILADLAMLEYAAERYPQLERHVSVQASATNEEAIRFYQRHFDVSRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTAQGMESRLNDVLIDRYRDDENASYPTLCKGRYRVDDVRYHALEEPTSLNTLELLPELLAANIASVKIEGRQRSPAYVSQVARIWRQAIDRCQADPATYRAEAGWMEALGAMSEGTQTTLGAYHRKWQ
>NZ_CP015613.1|WP_065505794.1|450378_451257_-|U32-family-peptidase
MKYALGSVLYYWPKTEIEEFYRQAVNSSAEIIYLGESVCTKRREMKVGDWLTLAQEIARSGKQVVISTLALLQAPSELNELKRYVENGEFLIEANDLGTVNMAAERGLPFVAGHALNCYNAYTLRLLHRQGMVRWCMPVELSRDWLANLLTQCDELGFRHQFEVEVLSYGHLPLAYSARCFTARSENRGKDDCETCCIHYPQGRMMRSQEEQQVFVLNGIQTMSGYCYNLGNELQSMQGLVDIVRLSPQSAETLALIDSFRANEQGAQPLVLTDKADCNGYWRRVAGLELVQ
>NZ_CP015613.1|WP_065505793.1|450105_450309_+|hypothetical-protein
MGPGKFAKYFSTFIGLMTTMQLLYHPVLIAGSPKEHLANAAIAVFMGLGVRSFGLMCVSFYHWFNGK
>NZ_CP015613.1|WP_065505792.1|449735_450059_+|hypothetical-protein
MSTIRELTLDEMKLIGGCGDGNNGGDRDRTSRGAPDTCANKTGAYMIIGAFTGMPGGPPGMLGMAFAGALTGVVGCDRNSQSKNNNDNKGALGGNRNANSVNGQCRW
>NZ_CP015613.1|WP_065505791.1|448473_448746_-|hypothetical-protein
MNNYIIFFKDKESKVIAADLVTREISRELKIKGFAKYPEIIEANNEKDAIKKLNKQGNEHLNALSEYSGNIFFYCAVLVVGLVLAFIFSS
>NZ_CP015613.1|WP_065505790.1|446980_448120_+|ABC-transporter-permease
MKIYWQTFVRVLLGMLERPMWLMLILSLCIMSMVYANRTVWDLPVGVVDQDHSTASRQLIRQLDATSKIAIQTYDSQEQAQRDLGWRKLFAVIIMPVDLEKKILNGQNIVVPVYGDATNRLANGQIQQDVVAAYQQLLGQYNTGLLLRSGFSERQAQVILTPIVGQTLDVFNPGISFAAIIFPGLLVMLLQHSLLIACIRVSIAMKSTPGGKAPLAAHLGGLTALLPIWLFLSIVLFVLWPWVLGYRQTAGIPEILLLTFPFLLAVLGLGKLVTECLRSVEMIYLTLAFITTPIFYLSGTIWPLQAMPGWVRTISYCIPSTWATKAIAGVNQMGLSLNEVWGDVVMLLVLGIIYTLLGVGVGFIRNSVALRSLFRKRSA
>NZ_CP015613.1|WP_065505789.1|445829_446984_+|ABC-transporter-permease
MAMERVKAGWRCFSHAFDNECRIAFRSPVVHWLSWIFPLMLFGLISSNFSEGTLLDLPVSVVDSDHSSLSKSLIRRLDAGSHAHVEAYDGGLNESLHRLRSAQDYALLYVPPDFEANALAGKQPSVVMYYNALFYGAGLYSTQDFSGLMTEINAGTRSIIAGEMGKTLPPLADVTLSYGSLFNASGSYIYYQQFAATIHLLQLFVVTCMIYVLARSKSLLKARPFSLALLGKLAPYTLCFTSLLMVEIAALVGIFDARVSGNPLFMLMIGFFYVMAAQSVGLLLFTFTGSTITAYSLIGILVSIALTFSGMAVPELSMPLPARIISNIEPLTHALYAMFDVFLRQVPASAIFSVCALLAVYPLVTALLVRNRLLQRLLKEGGAG
>NZ_CP015613.1|WP_065505798.1|455044_456025_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MNHALSPSELKTILHSKRANLYYLQYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANEAEVAVSWLTPQSEYRPTEYLQNWVSFWFDDGKRLEAAKLFQQVRIEQIKRHWLGSRMQREAGFALNEERLLALTERYQTSLSNSETHNELMLQEAVMTKALYKLAAEAVSYGDFTRAKRGGGSDSANHFLDHGNYLAYGLAATATWVTGLPHGLAVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMAGEDEQEFRQRCIGGFQRAEALDLMIDTLQKTAGHLGQAVS
>NZ_CP015613.1|WP_065505799.1|456021_459297_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCNKFALIQTRKILDQFAERKGDRSWQTAITLEGVKTLRQALRKTARRNTAVACHWIRGANQTELLWVVGNPRRFNAQGTVPTNSTERDVLRSKDENAWYSAESISLMAGIAGLFHDFGKANALFQAGLTGHGEKRFQPYRHEWVSLRLFQAFVGQQPDDQWLAALASVVPQDEPAMLKRLYRDRQGKSDSPFSTLPPLAKVIGWLIVAHHRLPVYPGSGSSERYRDVPDFSCSDSWLENQFNASWNSTNQDYDDWTTDAFTQVWHFPQGTPLQSPLWCAKAQKLAKRAQQLGTLSQFGRLDQQFAVHLARLMLMLADHVYSSGPAVEAWQAPTYVAWANTDRMTGKRKQKLDEHNIGVGQNALLLGRLLPHLRSTLPAITRHKDFKRRSALEGFRWQDKAYDVAASLRQRSQQQGFFGVNMASTGCGKTFANARIMYALADEQIGCRFSIALGLRTLTLQTGDALRDRLHLQDDDLAVLIGSTAVQQLHKASAADIGSASAEALFGEHQYVRYDGSLDDGRLSRWLAQDTRLHKLISAPVLVSTIDYLIPATEGVRGGRQIAPMLRLLTSDLVLDEPDDFDIADLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYCTGRREYQRSCAEPGAPLKVCCAWFDEYGAFSEEIDKPAAFLETHSRFVAQRIGKLEQLTPLRHAELIPVVAAGRQKEAVFDALSTTLHHSIINLSQHHQQRHGNGKTVSVGLIRMANINPLVAVAQRLMLLNPPADCRIHYCVYHSQHPLAMRSHIERRLDTLLTRHQPEALWDVDEIKQALARYPESHHVFVVVASPVAEVGRDWDLDWAIAEPSSMRSLIQLAGRIQRHRQQPPKMPNLLILNKNVKALSERDVESPVYCRPGFESRNFRLTSHDLQDLLLLQQYQHVSAIPRIRERSQGSAHGPLFDNLVDLEHRRLWAALLGTQKNSESAALWWRYPLSWNGEMQRRYPFRLSAPEEQYYLHLEEDEDALVFVNRDTGASGSKESGDFDYPSLTLAEGNSLWMDIDYQQLYLTLAEALNMEFKEVSEKFGEINLRKPTEDETDAWSFHPSLGVYRTV
>NZ_CP015613.1|WP_065505800.1|459324_460662_+|type-I-F-CRISPR-associated-protein-Csy1
MSQNGLAAFIVSYVDGRRQPKLEAFDKDAQKKLATAVEADLALLQQQLAQERRDLEQRYQVRSWLTDASARAGQINFVTHAAKYTHSDVKGSSVYDEGHDDEYYLSTATLVNPVIDAVCNAAVLDVAKLLQTEHNGDSLLASLQRKDHAALAELAEDPQQLELWINGFNQALTDKQPSSHKLAKQIYFPVGDHYHLLSPLFSSSLAQAMYERLSHARFSDEAKEANQARRAEQWSPRTLSYFPQTAVLNMGGTKPQNISYLNSVRGGRVWLLSCMPPEWQSLEKPPYGCRSIFDRRGPFSHLVRGTVAQLKRFLNNVQERSNTVEIRRQRQAYIDEIIDMLFNVAADIQRDEWRGWTADENCELKPAQQLWLDPYRVKDDALFRTERENGQWQGEIADDFAVWLNNQLRDEQLNMGMVDRREWRTTPLFRQRLRELEYGLAEDLK
>NZ_CP015613.1|WP_065505801.1|460658_461624_+|type-I-F-CRISPR-associated-protein-Csy2
MSHLIVLRHLQVENANAIAGLTYGFPAISHFLGYVHALSRKLQTSHGLTLGGCGVICHRRQVHVYTSGRDYQFALTRNPLTKEARTAAFNEEGRMHMTVSLVIECSGEIANGDIGLDQLQKHLHTLCQTQKLAGGSITRLRGVSVQGYPQQPDDVRRLICRLLPGFVLMDRSVLLQQHFTALKQSQPQAEMIDAWLDFAALKMQAEPINQEKTPMEGDKARWEYVGKPQPGYLVPLMTGYQRISELYSAGEVQNARDSQTPFCFAEAVYGVGEWRGLHRIQDLSPLFWRYQATEQGYYCRAMPETMVQGDESTNSIYLDDF
>NZ_CP015613.1|WP_065505802.1|461636_462629_+|type-I-F-CRISPR-associated-protein-Csy3
MAKTTIKTASVLAFERKLANSDAIMLAGKWGADEWQPIAIKEKAVRGTISNRLKNAIASDPAKLDAEIQKANLQTVDVAALPQDADTLKVVFTLRVLGNLATPSVCNDQEYQNALQAVITGYIDEHGFGALAARYAENLANGRFLWRNRVGAETVSVRVTGSKIWEFNAHDYSLREFSQPDGALGELAGEIERGLTGENFALFNVEAFVRLGHGQEIFPSQELVLDSNSKKSKLLYQVDNIAAMHSQKVGNALRTIDTWHPQAEALGAIAVEPYGSVTSRGIACRQPKDKLDFYTLLDRWVIKEEKPPVEQQHYVMAVLIRGGVFGEKGE
>NZ_CP015613.1|WP_065505803.1|462639_463194_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYQDIRVLPDPEFSEPTLMAALFAKLHRALAAHGKGDIGVSFPDMQRTPGTVLRLHGEHQALMVLAEYGWLKGLRDYTETGTIQAVPAAVQYRTVSRVQVKSSAERLRRRAVTKGWLTEEQARERIPVANEQRTSLPFMSLKSLSTGQSFRLFLKQGALQEKPTKGTFSFYGLSPSATVPWF
>NZ_CP015613.1|WP_065505804.1|464809_465238_+|YhbP-family-protein
MDTDLEHIRHFLGKQHVLTLCAGNGVDMWCANCFYVFDAEQMALWLMTETHTRHGELMLQNASVVGTIAPKPKTIALIRGVQYRAEAVMLSGDEEAQARARYCKRFPIAKVMKAPVWQLNLQEVKMTDNTLGFGKKLHWTRA
>NZ_CP015613.1|WP_065505805.1|465286_465925_+|NAD(P)H-binding-protein
MARILIVGATGLVGNELLQQLQGDPQVTAIVAPTRQPLPANEKTDNPVGEDLFELLSGLQQPVDIIFCCLGTTRKVAGSDANFRYVDYQLVVESALTGRRLGAQHCLVASAVGANPRSSFLYNRTKGEMEQALREQNWPRLTLVRPSMLLGDRPSPRLMERLTAPLFKLLPGKWRSVAAKDVAQTLLEQAFSPGSGVRVLESDQLHRYGNVH
>NZ_CP015613.1|WP_065505806.1|465875_466658_-|phosphonate-metabolism-protein-PhnP
MQLTFLGTGGAQQIPVFGCDCQVCRRARREPAFRRRPCSAMLKFQGETTLLDAGLPSLERRFSAGEIQRFLLTHYHMDHVQGLFPLRWGCGNFIPVYGPADEQGCDDLFKHPGILAFQPPLTPFERVELGGLHITPLPLQHSKPTLGYLVQAEGYAVAYLTDTVGLPPDTEAFLRKITLDLLVLDCSLPPQPQAPRNHNDLTRAQETQQRLQPGRTLLTHISHHLDLWLMDNELPTGMELAFDNLSVHCHSDAVGRTPAP
>NZ_CP015613.1|WP_065505807.1|466670_467273_-|acetyltransferase
MNDFAQPRIGDNVILNRTRLGQYVHLADDAILEEVEMGDYSYTAGHNQIFYATLGKFVSIASYARINPGNHPTYQRIAQHHFTYRASEYGLGEDDEAFFDWRREHHVTVGHDVWIGHNAILMPGVSIGNGAVIGSAAVVTKNVEPYAIVAGVAAKKIGMRFDDALIERIERSQWWHWDHQTLQERLADFSDINAFAEKYL

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Crispr_ID: NZ_CP015613_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015613_2

463325-464793

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRT

24 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP015613_2

>merge|NZ_CP015613|2|463325-464793|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTTAGAAATTGCATCGGCGTATGTGCGCGCAGTCTCCGCAGTTCACTGCCGTATAGGCAGCTTAGAAATTGCGAAGATGGTTCGTTACTCAAGCCAATCCGTTCACTGCCGTATAGGCAGCTTAGAAACGATACACCAGCCGGGACCCCATTAACACTAAGTTCACTGCCGTATAGGCAGCTTAGAAACGCACCACTCGCTGGCGCAGAACCCGGTAAATGTTCACTGCCGTATAGGCAGCTTAGAAAAGAAGACAATGACGGGAGAAACTGTCTCCTTTGTTCACTGCCGTATAGGCAGCTTAGAAAGATGAGGCCAGCGACTCATGAGCGCCCTTCCCGTTCACTGCCGTATAGGCAGCTTAGAAATGAATGCGCTCATCGAAAACACGATGGTCACCGTTCACTGCCGTATAGGCAGCTTAGAAAAATCAGATTAGTGAAGGCCGAGCAGCTGTAACGTTCACTGCCGTATAGGCAGCTTAGAAATTTGATAAACCCGCTAATGGTGTCAGTATCACGTTCACTGCCGTATAGGCAGCTTAGAAATGTATTTGTGCCGCCGAGGTGGAGAAATAGGCGTTCACTGCCGTATAGGCAGCTTAGAAAGGGTGGTGTGCCTGCTGCTGCGGGTGCAATGGGTTCACTGCCGTATAGGCAGCTTAGAAATGTTACTCCTCCAGCACCGGGTGGTGTGCCTGGTTCACTGCCGTATAGGCAGCTTAGAAAGCGGTAGGTTCGATGCGATTGAGTGCCATGATGTTCACTGCCGTATAGGCAGCTTAGAAAAGAAACGCGCTGCAAAAGTAATTCGTGCATTGGTTCACTGCCGTATAGGCAGCTTAGAAAGTGACCTGCCAATTATCAGCGACCCGGCAAATGTTCACTGCCGTATAGGCAGCTTAGAAATAACGGTGCTATCACATGCGGCGATGACATCGGTTCACTGCCGTATAGGCAGCTTAGAAAAGGCAGCGGATCAACATATCGCGCAACCATGCGTTCACTGCCGTATAGGCAGCTTAGAAATTTATAAGTAGAGGCTGACGTATCCAGATTGTGTTCACTGCCGTATAGGCAGCTTAGAAACAGACAGAGCCGTTGACGTTGCCATCTGGGGCGTTCACTGCCGTATAGGCAGCTTAGAAAAATAGCCAGCTTAGTAAAAACTGCATTAAAGGGTTCACTGCCGTATAGGCAGCTTAGAAATGCAGACGCACAAACACGGTGGCGTAGAAACTGTTCACTGCCGTATAGGCAGCTTAGAAACAATACATTGCTACCCTGCCCATTGCATTATGCGTTCACTGCCGTATAGGCAGCTTAGAAAAGGGGAATTGTGGTTCCCATGGCGTCTGGCCAGTTCACTGCCGTATAGGCAGCTTAGAAAATCCAGCGATAGCCGTTCGGGTCTAGGTGGCCGTTCACTGCCGCACAGGCAGTTTTAATA

>NZ_CP015613|2|2|463325-464733|PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTGCATCGGCGTATGTGCGCGCAGTCTCCGCA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTGCGAAGATGGTTCGTTACTCAAGCCAATCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGATACACCAGCCGGGACCCCATTAACACTAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGCACCACTCGCTGGCGCAGAACCCGGTAAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGAAGACAATGACGGGAGAAACTGTCTCCTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GATGAGGCCAGCGACTCATGAGCGCCCTTCCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGAATGCGCTCATCGAAAACACGATGGTCACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATCAGATTAGTGAAGGCCGAGCAGCTGTAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTGATAAACCCGCTAATGGTGTCAGTATCAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTATTTGTGCCGCCGAGGTGGAGAAATAGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGGTGGTGTGCCTGCTGCTGCGGGTGCAATGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTTACTCCTCCAGCACCGGGTGGTGTGCCTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCGGTAGGTTCGATGCGATTGAGTGCCATGAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGAAACGCGCTGCAAAAGTAATTCGTGCATTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTGACCTGCCAATTATCAGCGACCCGGCAAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TAACGGTGCTATCACATGCGGCGATGACATCG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGGCAGCGGATCAACATATCGCGCAACCATGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTATAAGTAGAGGCTGACGTATCCAGATTGT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAGACAGAGCCGTTGACGTTGCCATCTGGGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATAGCCAGCTTAGTAAAAACTGCATTAAAGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGCAGACGCACAAACACGGTGGCGTAGAAACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAATACATTGCTACCCTGCCCATTGCATTATGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGGGGAATTGTGGTTCCCATGGCGTCTGGCCA
GTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP015613|2|2|463325-464793|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTGCATCGGCGTATGTGCGCGCAGTCTCCGCA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTGCGAAGATGGTTCGTTACTCAAGCCAATCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGATACACCAGCCGGGACCCCATTAACACTAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGCACCACTCGCTGGCGCAGAACCCGGTAAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGAAGACAATGACGGGAGAAACTGTCTCCTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GATGAGGCCAGCGACTCATGAGCGCCCTTCCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGAATGCGCTCATCGAAAACACGATGGTCACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATCAGATTAGTGAAGGCCGAGCAGCTGTAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTGATAAACCCGCTAATGGTGTCAGTATCAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTATTTGTGCCGCCGAGGTGGAGAAATAGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGGTGGTGTGCCTGCTGCTGCGGGTGCAATGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTTACTCCTCCAGCACCGGGTGGTGTGCCTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCGGTAGGTTCGATGCGATTGAGTGCCATGAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGAAACGCGCTGCAAAAGTAATTCGTGCATTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTGACCTGCCAATTATCAGCGACCCGGCAAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TAACGGTGCTATCACATGCGGCGATGACATCG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGGCAGCGGATCAACATATCGCGCAACCATGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTATAAGTAGAGGCTGACGTATCCAGATTGT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAGACAGAGCCGTTGACGTTGCCATCTGGGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATAGCCAGCTTAGTAAAAACTGCATTAAAGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGCAGACGCACAAACACGGTGGCGTAGAAACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAATACATTGCTACCCTGCCCATTGCATTATGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGGGGAATTGTGGTTCCCATGGCGTCTGGCCA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCCAGCGATAGCCGTTCGGGTCTAGGTGGCC
GTTCACTGCCGCACAGGCAGTTTTAATA

>NZ_CP015613|2|2|463325-464793|CRT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTGCATCGGCGTATGTGCGCGCAGTCTCCGCA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTGCGAAGATGGTTCGTTACTCAAGCCAATCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGATACACCAGCCGGGACCCCATTAACACTAA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGCACCACTCGCTGGCGCAGAACCCGGTAAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGAAGACAATGACGGGAGAAACTGTCTCCTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GATGAGGCCAGCGACTCATGAGCGCCCTTCCC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGAATGCGCTCATCGAAAACACGATGGTCACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATCAGATTAGTGAAGGCCGAGCAGCTGTAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTGATAAACCCGCTAATGGTGTCAGTATCAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTATTTGTGCCGCCGAGGTGGAGAAATAGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	GGGTGGTGTGCCTGCTGCTGCGGGTGCAATGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGTTACTCCTCCAGCACCGGGTGGTGTGCCTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCGGTAGGTTCGATGCGATTGAGTGCCATGAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGAAACGCGCTGCAAAAGTAATTCGTGCATTG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTGACCTGCCAATTATCAGCGACCCGGCAAAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TAACGGTGCTATCACATGCGGCGATGACATCG
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGGCAGCGGATCAACATATCGCGCAACCATGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTTATAAGTAGAGGCTGACGTATCCAGATTGT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAGACAGAGCCGTTGACGTTGCCATCTGGGGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AATAGCCAGCTTAGTAAAAACTGCATTAAAGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGCAGACGCACAAACACGGTGGCGTAGAAACT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CAATACATTGCTACCCTGCCCATTGCATTATGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGGGGAATTGTGGTTCCCATGGCGTCTGGCCA
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCCAGCGATAGCCGTTCGGGTCTAGGTGGCC
GTTCACTGCCGCACAGGCAGTTTTAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015613.1\|WP_065505801.1\|460658_461624_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP015613.1\|WP_065505800.1\|459324_460662_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP015613.1\|WP_065505807.1\|466670_467273_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|132351
NZ_CP015613.1\|WP_065505810.1\|468974_469679_-\|phosphonate-C-P-lyase-system-protein-PhnL	unknown	unknown	gnl\|CDD\|227118
NZ_CP015613.1\|WP_065505806.1\|465875_466658_-\|phosphonate-metabolism-protein-PhnP	unknown	unknown	gnl\|CDD\|183052
NZ_CP015613.1\|WP_065505803.1\|462639_463194_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP015613.1\|WP_065505795.1\|451268_452264_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP015613.1\|WP_065505804.1\|464809_465238_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP015613.1\|WP_065505802.1\|461636_462629_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP015613.1\|WP_065505799.1\|456021_459297_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP015613.1\|WP_065505809.1\|467838_468975_-\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|237967
NZ_CP015613.1\|WP_065505798.1\|455044_456025_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP015613.1\|WP_004952936.1\|469698_470487_-\|phosphonate-C-P-lyase-system-protein-PhnK	unknown	unknown	gnl\|CDD\|183280
NZ_CP015613.1\|WP_065505796.1\|453006_453510_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP015613.1\|WP_062791109.1\|452491_453013_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP015613.1\|WP_065505811.1\|471339_472425_-\|carbon-phosphorus-lyase-complex-subunit-PhnI	unknown	unknown	gnl\|CDD\|226153
NZ_CP015613.1\|WP_065505805.1\|465286_465925_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP015613.1\|WP_004952938.1\|470486_471347_-\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	unknown	unknown	gnl\|CDD\|226154
NZ_CP015613.1\|WP_065505808.1\|467269_467839_-\|ribose-1,5-bisphosphokinase	unknown	unknown	gnl\|CDD\|236648
NZ_CP015613.1\|WP_065505797.1\|453496_453799_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979

Protein	Function_ID	Function_description	E-value
NZ_CP015613.1\|WP_065505801.1\|460658_461624_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.78926e-141
NZ_CP015613.1\|WP_065505800.1\|459324_460662_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	2.29005e-177
NZ_CP015613.1\|WP_065505807.1\|466670_467273_-\|acetyltransferase	gnl\|CDD\|132351	TIGR03308, phn_thr-fam, phosphonate metabolism protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.	7.18773e-85
NZ_CP015613.1\|WP_065505810.1\|468974_469679_-\|phosphonate-C-P-lyase-system-protein-PhnL	gnl\|CDD\|227118	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.26364e-144
NZ_CP015613.1\|WP_065505806.1\|465875_466658_-\|phosphonate-metabolism-protein-PhnP	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	8.30317e-157
NZ_CP015613.1\|WP_065505803.1\|462639_463194_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.07356e-92
NZ_CP015613.1\|WP_065505795.1\|451268_452264_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.68303e-114
NZ_CP015613.1\|WP_065505804.1\|464809_465238_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	3.94157e-94
NZ_CP015613.1\|WP_065505802.1\|461636_462629_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP015613.1\|WP_065505799.1\|456021_459297_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP015613.1\|WP_065505809.1\|467838_468975_-\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	gnl\|CDD\|237967	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional.	0
NZ_CP015613.1\|WP_065505798.1\|455044_456025_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP015613.1\|WP_004952936.1\|469698_470487_-\|phosphonate-C-P-lyase-system-protein-PhnK	gnl\|CDD\|183280	PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional.	0
NZ_CP015613.1\|WP_065505796.1\|453006_453510_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	4.02654e-57
NZ_CP015613.1\|WP_062791109.1\|452491_453013_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	2.02811e-69
NZ_CP015613.1\|WP_065505811.1\|471339_472425_-\|carbon-phosphorus-lyase-complex-subunit-PhnI	gnl\|CDD\|226153	COG3626, PhnI, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0
NZ_CP015613.1\|WP_065505805.1\|465286_465925_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.14204e-66
NZ_CP015613.1\|WP_004952938.1\|470486_471347_-\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	gnl\|CDD\|226154	COG3627, PhnJ, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0
NZ_CP015613.1\|WP_065505808.1\|467269_467839_-\|ribose-1,5-bisphosphokinase	gnl\|CDD\|236648	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.	3.40636e-102
NZ_CP015613.1\|WP_065505797.1\|453496_453799_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	1.47648e-40

>NZ_CP015613.1|WP_065505803.1|462639_463194_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYQDIRVLPDPEFSEPTLMAALFAKLHRALAAHGKGDIGVSFPDMQRTPGTVLRLHGEHQALMVLAEYGWLKGLRDYTETGTIQAVPAAVQYRTVSRVQVKSSAERLRRRAVTKGWLTEEQARERIPVANEQRTSLPFMSLKSLSTGQSFRLFLKQGALQEKPTKGTFSFYGLSPSATVPWF
>NZ_CP015613.1|WP_065505802.1|461636_462629_+|type-I-F-CRISPR-associated-protein-Csy3
MAKTTIKTASVLAFERKLANSDAIMLAGKWGADEWQPIAIKEKAVRGTISNRLKNAIASDPAKLDAEIQKANLQTVDVAALPQDADTLKVVFTLRVLGNLATPSVCNDQEYQNALQAVITGYIDEHGFGALAARYAENLANGRFLWRNRVGAETVSVRVTGSKIWEFNAHDYSLREFSQPDGALGELAGEIERGLTGENFALFNVEAFVRLGHGQEIFPSQELVLDSNSKKSKLLYQVDNIAAMHSQKVGNALRTIDTWHPQAEALGAIAVEPYGSVTSRGIACRQPKDKLDFYTLLDRWVIKEEKPPVEQQHYVMAVLIRGGVFGEKGE
>NZ_CP015613.1|WP_065505801.1|460658_461624_+|type-I-F-CRISPR-associated-protein-Csy2
MSHLIVLRHLQVENANAIAGLTYGFPAISHFLGYVHALSRKLQTSHGLTLGGCGVICHRRQVHVYTSGRDYQFALTRNPLTKEARTAAFNEEGRMHMTVSLVIECSGEIANGDIGLDQLQKHLHTLCQTQKLAGGSITRLRGVSVQGYPQQPDDVRRLICRLLPGFVLMDRSVLLQQHFTALKQSQPQAEMIDAWLDFAALKMQAEPINQEKTPMEGDKARWEYVGKPQPGYLVPLMTGYQRISELYSAGEVQNARDSQTPFCFAEAVYGVGEWRGLHRIQDLSPLFWRYQATEQGYYCRAMPETMVQGDESTNSIYLDDF
>NZ_CP015613.1|WP_065505800.1|459324_460662_+|type-I-F-CRISPR-associated-protein-Csy1
MSQNGLAAFIVSYVDGRRQPKLEAFDKDAQKKLATAVEADLALLQQQLAQERRDLEQRYQVRSWLTDASARAGQINFVTHAAKYTHSDVKGSSVYDEGHDDEYYLSTATLVNPVIDAVCNAAVLDVAKLLQTEHNGDSLLASLQRKDHAALAELAEDPQQLELWINGFNQALTDKQPSSHKLAKQIYFPVGDHYHLLSPLFSSSLAQAMYERLSHARFSDEAKEANQARRAEQWSPRTLSYFPQTAVLNMGGTKPQNISYLNSVRGGRVWLLSCMPPEWQSLEKPPYGCRSIFDRRGPFSHLVRGTVAQLKRFLNNVQERSNTVEIRRQRQAYIDEIIDMLFNVAADIQRDEWRGWTADENCELKPAQQLWLDPYRVKDDALFRTERENGQWQGEIADDFAVWLNNQLRDEQLNMGMVDRREWRTTPLFRQRLRELEYGLAEDLK
>NZ_CP015613.1|WP_065505799.1|456021_459297_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCNKFALIQTRKILDQFAERKGDRSWQTAITLEGVKTLRQALRKTARRNTAVACHWIRGANQTELLWVVGNPRRFNAQGTVPTNSTERDVLRSKDENAWYSAESISLMAGIAGLFHDFGKANALFQAGLTGHGEKRFQPYRHEWVSLRLFQAFVGQQPDDQWLAALASVVPQDEPAMLKRLYRDRQGKSDSPFSTLPPLAKVIGWLIVAHHRLPVYPGSGSSERYRDVPDFSCSDSWLENQFNASWNSTNQDYDDWTTDAFTQVWHFPQGTPLQSPLWCAKAQKLAKRAQQLGTLSQFGRLDQQFAVHLARLMLMLADHVYSSGPAVEAWQAPTYVAWANTDRMTGKRKQKLDEHNIGVGQNALLLGRLLPHLRSTLPAITRHKDFKRRSALEGFRWQDKAYDVAASLRQRSQQQGFFGVNMASTGCGKTFANARIMYALADEQIGCRFSIALGLRTLTLQTGDALRDRLHLQDDDLAVLIGSTAVQQLHKASAADIGSASAEALFGEHQYVRYDGSLDDGRLSRWLAQDTRLHKLISAPVLVSTIDYLIPATEGVRGGRQIAPMLRLLTSDLVLDEPDDFDIADLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYCTGRREYQRSCAEPGAPLKVCCAWFDEYGAFSEEIDKPAAFLETHSRFVAQRIGKLEQLTPLRHAELIPVVAAGRQKEAVFDALSTTLHHSIINLSQHHQQRHGNGKTVSVGLIRMANINPLVAVAQRLMLLNPPADCRIHYCVYHSQHPLAMRSHIERRLDTLLTRHQPEALWDVDEIKQALARYPESHHVFVVVASPVAEVGRDWDLDWAIAEPSSMRSLIQLAGRIQRHRQQPPKMPNLLILNKNVKALSERDVESPVYCRPGFESRNFRLTSHDLQDLLLLQQYQHVSAIPRIRERSQGSAHGPLFDNLVDLEHRRLWAALLGTQKNSESAALWWRYPLSWNGEMQRRYPFRLSAPEEQYYLHLEEDEDALVFVNRDTGASGSKESGDFDYPSLTLAEGNSLWMDIDYQQLYLTLAEALNMEFKEVSEKFGEINLRKPTEDETDAWSFHPSLGVYRTV
>NZ_CP015613.1|WP_065505798.1|455044_456025_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MNHALSPSELKTILHSKRANLYYLQYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANEAEVAVSWLTPQSEYRPTEYLQNWVSFWFDDGKRLEAAKLFQQVRIEQIKRHWLGSRMQREAGFALNEERLLALTERYQTSLSNSETHNELMLQEAVMTKALYKLAAEAVSYGDFTRAKRGGGSDSANHFLDHGNYLAYGLAATATWVTGLPHGLAVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMAGEDEQEFRQRCIGGFQRAEALDLMIDTLQKTAGHLGQAVS
>NZ_CP015613.1|WP_065505797.1|453496_453799_-|GIY-YIG-nuclease-family-protein
MDIPTWHLYMLRLPNGMLYTGITTDVVRRLAQHQAGKGAKALRGKGELTLAFHCRVGDRSTALRLEYRVKQLSKIQKERLVSHPPPSLDYLLPSAEVKTG
>NZ_CP015613.1|WP_065505796.1|453006_453510_+|N-acetyltransferase
MLIRVEIPVDAAGIDALLRRAFGRDDEADLVQQLREDGLLTLGIVATDDEGGVVGYAAFSPVDVAGEDRQWVGLAPLAVDESLRRQGLGEKLIYEGLDSLNEFSYAAVVVLGDPAYYGRFGFKPAAAYGLRCRWPGAEAAFQVYPLAEDALSDASGAVEYSEPFNRF
>NZ_CP015613.1|WP_062791109.1|452491_453013_+|SCP2-domain-containing-protein
MLEQLRARIVRQGPSLLRVPLKFTPFALQRQLLEQVLGWQFRQALADGDLAFLESRWLKIEVRDLALHWFMTVENDKLVVSHHAEADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELEAMPAPLRIGLLQLAEFVEAGLQEGTAQTSRVPVAC
>NZ_CP015613.1|WP_065505795.1|451268_452264_-|U32-family-peptidase
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVEYVHRHRRKLHIAINTFAHPDGYGRWQRAVDMAAQLGADVLILADLAMLEYAAERYPQLERHVSVQASATNEEAIRFYQRHFDVSRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTAQGMESRLNDVLIDRYRDDENASYPTLCKGRYRVDDVRYHALEEPTSLNTLELLPELLAANIASVKIEGRQRSPAYVSQVARIWRQAIDRCQADPATYRAEAGWMEALGAMSEGTQTTLGAYHRKWQ
>NZ_CP015613.1|WP_065505804.1|464809_465238_+|YhbP-family-protein
MDTDLEHIRHFLGKQHVLTLCAGNGVDMWCANCFYVFDAEQMALWLMTETHTRHGELMLQNASVVGTIAPKPKTIALIRGVQYRAEAVMLSGDEEAQARARYCKRFPIAKVMKAPVWQLNLQEVKMTDNTLGFGKKLHWTRA
>NZ_CP015613.1|WP_065505805.1|465286_465925_+|NAD(P)H-binding-protein
MARILIVGATGLVGNELLQQLQGDPQVTAIVAPTRQPLPANEKTDNPVGEDLFELLSGLQQPVDIIFCCLGTTRKVAGSDANFRYVDYQLVVESALTGRRLGAQHCLVASAVGANPRSSFLYNRTKGEMEQALREQNWPRLTLVRPSMLLGDRPSPRLMERLTAPLFKLLPGKWRSVAAKDVAQTLLEQAFSPGSGVRVLESDQLHRYGNVH
>NZ_CP015613.1|WP_065505806.1|465875_466658_-|phosphonate-metabolism-protein-PhnP
MQLTFLGTGGAQQIPVFGCDCQVCRRARREPAFRRRPCSAMLKFQGETTLLDAGLPSLERRFSAGEIQRFLLTHYHMDHVQGLFPLRWGCGNFIPVYGPADEQGCDDLFKHPGILAFQPPLTPFERVELGGLHITPLPLQHSKPTLGYLVQAEGYAVAYLTDTVGLPPDTEAFLRKITLDLLVLDCSLPPQPQAPRNHNDLTRAQETQQRLQPGRTLLTHISHHLDLWLMDNELPTGMELAFDNLSVHCHSDAVGRTPAP
>NZ_CP015613.1|WP_065505807.1|466670_467273_-|acetyltransferase
MNDFAQPRIGDNVILNRTRLGQYVHLADDAILEEVEMGDYSYTAGHNQIFYATLGKFVSIASYARINPGNHPTYQRIAQHHFTYRASEYGLGEDDEAFFDWRREHHVTVGHDVWIGHNAILMPGVSIGNGAVIGSAAVVTKNVEPYAIVAGVAAKKIGMRFDDALIERIERSQWWHWDHQTLQERLADFSDINAFAEKYL
>NZ_CP015613.1|WP_065505808.1|467269_467839_-|ribose-1,5-bisphosphokinase
MAQLIYLMGPSGSGKDSLLAQLRADADSAPLVAHRYITRPADAGCENHIALSEPEFLRRRAKGLFALDWQAHQQHYAFGIEVDLWLLQGIDVVVNGSRAHLPQAQQRYGAQLLPVCLQVSGEVLRQRLQNRGREDAAQIEQRLARAAEYQQKLPAGCRLLANDGELQDTLTALLALLPASSKHPQDATQ
>NZ_CP015613.1|WP_065505809.1|467838_468975_-|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase
MIINNVKLVLADQIVEGSLEINDGVIRSFADTPSQLPQALNGEGGWLLPGLIELHTDNLDKFFTPRPNVDWPAHSAMSSHDALMVANGITTVLDAVAIGDVRDGGHRLENLQKMIDAVIHSQRAGVNRAEHRLHLRCELPNESTLPLFEQLMDKPGVSLVSLMDHSPGQRQFASREKYREYYQGKYHLNDQQMSEYEEQQIGLSARWATPNREAIAAHCRARKISLASHDDATAEHVAESCALGSAIAEFPTTEDAARASHRQGLQVLMGAPNIVRGGSHSGNVAAHHLAALGVLDILSSDYYPASLLDAAFRIAADERNGYDLPQAVRMITGNPAKALDLHDRGTIAEGLRADLVLARPHGEHIYVQNVWRQGKQVF
>NZ_CP015613.1|WP_065505810.1|468974_469679_-|phosphonate-C-P-lyase-system-protein-PhnL
MTIQIRVEHLSKTFVLHQQHGTRLPVLHDANMTVSSGECVVLHGHSGSGKSTLLRSLYANYLPDSGHIWVNHQGEWLDMVQAEARQILAVRRHTLGWVSQFLRVIPRISALDVVMQPLLEQGVDRAECRERAETLLNQLNVPQRLWQLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLDSRNSAAVVGLIEQAKRRGAAIVGIFHDEGVRQQVADRLYDMQAPQALEIF
>NZ_CP015613.1|WP_004952936.1|469698_470487_-|phosphonate-C-P-lyase-system-protein-PhnK
MISQPLSTTPLLSVANLTHLYAPGKGFSDVSFDIYPGEVLGIVGESGSGKTTLLKSISARLAPQHGQILYRPQAGQQHDLYAMAESDRRRLLRTDWGVVHQHPLDGLRPKVSAGGNIGERLMAIGQRHYGDIRRQAAQWLEDVEIPVSRLDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSVQARLLDLLRNLVVEMQLAAVIVTHDLGVARLLAHRLLVMKEGQVVESGLTDRVLDDPHHPYTQLLVSSVLS
>NZ_CP015613.1|WP_004952938.1|470486_471347_-|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ
MSEVLTGYNLGYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQLTASVIGRADVLKVIDQGADDTTNAVSIRRFFQRVAGVATTERTPEATLIQTRHRIPETALHEDQILIYQVPIPEPLRFIEPRETETRKMHALEEYGVMQVKLYEDIARYGHIATTYAYPVKVNDRYVMDPSPIPKFDNPKMHMMPALQLFGAGREKRIYALPPFTKVESLDFDDHPFSVQKWDEPCALCGSRHSYLDEVVLDDQGNRMFVCSDTDYCRQQLAQPSQEAQH
>NZ_CP015613.1|WP_065505811.1|471339_472425_-|carbon-phosphorus-lyase-complex-subunit-PhnI
MYVAVKGGEKAIEAAHQLQEQLRRGDESVPALGIRQIEQQLGLAVDRVMTEGGIYDPELAALAIKQASGDLVEAIFLLRAYRTTLPRLAVSEPLATENMRLERRISAVYKDLPGGQVLGPTYDYTHRLLDFALLAEGETPHAPQADEPLPENCAHVFDLLSQQQLALAERDDGSVPDDITRNPPVYPCSRSARLQQLVRGDEGFLLALSYSTQRGYGRTHPFAGEIRTGYVSLEIVPEELGFAVNIGEILLTECEMVNGFVDPEDRPPHFTRGYGLVFGRAERKAMSMALVDRALQSPEYQEGVASPAQDEEFVLAHADNVEAAGFVSHLKLPHYVDFQAELELLKRLRREFSERQEARNE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015613_2	2.8\|463773\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463773-463804	32	MT843275	Serratia phage vB_SspM_BZS1, complete genome	36782-36813	1	0.969
NZ_CP015613_2	2.21\|464553\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464553-464584	32	NC_049341	Escherichia phage 503458, complete genome	15061-15092	6	0.812
NZ_CP015613_2	2.21\|464553\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464553-464584	32	CP025923	Escherichia phage sp. chromosome, complete genome	20718-20749	6	0.812
NZ_CP015613_2	2.21\|464553\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464553-464584	32	NC_049344	Escherichia phage 520873, complete genome	20718-20749	6	0.812
NZ_CP015613_2	2.21\|464553\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464553-464584	32	MN694749	Marine virus AFVG_250M1150, complete genome	13213-13244	6	0.812
NZ_CP015613_2	2.21\|464553\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464553-464584	32	MN694747	Marine virus AFVG_250M618, complete genome	13038-13069	6	0.812
NZ_CP015613_1	1.4\|454195\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	454195-454226	32	NZ_CP013598	Rhizobium sp. N741 plasmid pRspN741c, complete sequence	82145-82176	7	0.781
NZ_CP015613_1	1.4\|454195\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	454195-454226	32	NZ_CP013502	Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence	82069-82100	7	0.781
NZ_CP015613_1	1.4\|454195\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	454195-454226	32	NZ_CP013508	Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence	82145-82176	7	0.781
NZ_CP015613_1	1.4\|454195\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	454195-454226	32	NZ_CP013519	Rhizobium sp. N113 plasmid pRspN113b, complete sequence	82145-82176	7	0.781
NZ_CP015613_1	1.4\|454195\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	454195-454226	32	NZ_CP013492	Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence	82143-82174	7	0.781
NZ_CP015613_1	1.4\|454195\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	454195-454226	32	NZ_CP013497	Rhizobium sp. N621 plasmid pRspN621b, complete sequence	82143-82174	7	0.781
NZ_CP015613_1	1.4\|454195\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	454195-454226	32	NZ_CP013592	Rhizobium sp. N871 plasmid pRspN871b, complete sequence	82069-82100	7	0.781
NZ_CP015613_1	1.4\|454195\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	454195-454226	32	NC_010996	Rhizobium etli CIAT 652 plasmid pB, complete sequence	79847-79878	7	0.781
NZ_CP015613_2	2.4\|463533\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463533-463564	32	MN693543	Marine virus AFVG_25M469, complete genome	17323-17354	7	0.781
NZ_CP015613_2	2.14\|464133\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464133-464164	32	NZ_CP018028	Alteromonas mediterranea strain CP49 plasmid MCP49-600, complete sequence	401401-401432	7	0.781
NZ_CP015613_2	2.14\|464133\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464133-464164	32	NZ_CP018025	Alteromonas mediterranea strain CP48 plasmid pAMCP48-600, complete sequence	394791-394822	7	0.781
NZ_CP015613_2	2.20\|464493\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464493-464524	32	NC_012919	Photobacterium damselae subsp. piscicida plasmid pP9014 DNA, complete sequence	28628-28659	7	0.781
NZ_CP015613_2	2.20\|464493\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464493-464524	32	NZ_MH548371	Vibrio alginolyticus strain Vb1636 plasmid pVb1636, complete sequence	4211-4242	7	0.781
NZ_CP015613_2	2.20\|464493\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464493-464524	32	NC_010180	Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence	283882-283913	7	0.781
NZ_CP015613_2	2.21\|464553\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464553-464584	32	NC_049343	Escherichia phage 500465-2, complete genome	9951-9982	7	0.781
NZ_CP015613_2	2.21\|464553\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464553-464584	32	KP063541	Enterobacteria phage P88, complete genome	20728-20759	7	0.781
NZ_CP015613_2	2.2\|463413\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463413-463444	32	MT822288	Erwinia phage pEp_SNUABM_12, complete genome	37998-38029	8	0.75
NZ_CP015613_2	2.2\|463413\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463413-463444	32	NC_048052	Dickeya phage vB_DsoP_JA10, complete genome	33787-33818	8	0.75
NZ_CP015613_2	2.11\|463953\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463953-463984	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1697294-1697325	8	0.75
NZ_CP015613_2	2.11\|463953\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463953-463984	32	MK305889	Gordonia phage Mutzi, complete genome	24266-24297	8	0.75
NZ_CP015613_2	2.11\|463953\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463953-463984	32	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	15250-15281	8	0.75
NZ_CP015613_2	2.11\|463953\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463953-463984	32	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1111629-1111660	8	0.75
NZ_CP015613_2	2.11\|463953\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463953-463984	32	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	15250-15281	8	0.75
NZ_CP015613_2	2.11\|463953\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463953-463984	32	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1116309-1116340	8	0.75
NZ_CP015613_2	2.11\|463953\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463953-463984	32	MN508817	Yersinia phage JC221, partial genome	137484-137515	8	0.75
NZ_CP015613_2	2.4\|463533\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463533-463564	32	NZ_CP031599	Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence	376132-376163	9	0.719
NZ_CP015613_2	2.11\|463953\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463953-463984	32	NZ_CP034351	Streptomyces sp. W1SF4 plasmid p1, complete sequence	164685-164716	9	0.719
NZ_CP015613_2	2.12\|464013\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464013-464044	32	MG383452	Escherichia phage FEC14, complete genome	137112-137143	9	0.719
NZ_CP015613_1	1.11\|454616\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	454616-454647	32	NZ_CP021803	Sinorhizobium meliloti strain USDA1021 plasmid accessoryA, complete sequence	13031-13062	10	0.688
NZ_CP015613_2	2.4\|463533\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463533-463564	32	NZ_CP015737	Shinella sp. HZN7 plasmid pShin-01, complete sequence	270763-270794	10	0.688
NZ_CP015613_2	2.4\|463533\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463533-463564	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	705079-705110	10	0.688
NZ_CP015613_2	2.11\|463953\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	463953-463984	32	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	509895-509926	10	0.688
NZ_CP015613_2	2.15\|464193\|32\|NZ_CP015613\|PILER-CR,CRISPRCasFinder,CRT	464193-464224	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	970208-970239	10	0.688

1. spacer 2.8|463773|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to MT843275 (Serratia phage vB_SspM_BZS1, complete genome) position: , mismatch: 1, identity: 0.969

aatcagattagtgaaggccgagcagctgtaac	CRISPR spacer
aatcagattagtgaaggccgcgcagctgtaac	Protospacer
******************** ***********

2. spacer 2.21|464553|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NC_049341 (Escherichia phage 503458, complete genome) position: , mismatch: 6, identity: 0.812

tgcagacgcacaaacacggtggcgtagaaact	CRISPR spacer
tgcatacgcataaacacggtggcgtgaaaggt	Protospacer
**** *****.**************..**. *

3. spacer 2.21|464553|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to CP025923 (Escherichia phage sp. chromosome, complete genome) position: , mismatch: 6, identity: 0.812

tgcagacgcacaaacacggtggcgtagaaact	CRISPR spacer
tgcatacgcataaacacggtggcgtgaaaggt	Protospacer
**** *****.**************..**. *

4. spacer 2.21|464553|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NC_049344 (Escherichia phage 520873, complete genome) position: , mismatch: 6, identity: 0.812

tgcagacgcacaaacacggtggcgtagaaact	CRISPR spacer
tgcatacgcataaacacggtggcgtgaaaggt	Protospacer
**** *****.**************..**. *

5. spacer 2.21|464553|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to MN694749 (Marine virus AFVG_250M1150, complete genome) position: , mismatch: 6, identity: 0.812

-tgcagacgcacaaacacggtggcgtagaaact	CRISPR spacer
ataaagac-tacatacacggtggcgtggaaact	Protospacer
 *. **** .*** ************.******

6. spacer 2.21|464553|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to MN694747 (Marine virus AFVG_250M618, complete genome) position: , mismatch: 6, identity: 0.812

-tgcagacgcacaaacacggtggcgtagaaact	CRISPR spacer
ataaagac-tacatacacggtggcgtggaaact	Protospacer
 *. **** .*** ************.******

7. spacer 1.4|454195|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013598 (Rhizobium sp. N741 plasmid pRspN741c, complete sequence) position: , mismatch: 7, identity: 0.781

tggtaaccggctctcggtatcagacctcgaaa	CRISPR spacer
ggccaaccggctctcgctatcagaccacgtta	Protospacer
 * .************ ********* **  *

8. spacer 1.4|454195|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013502 (Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence) position: , mismatch: 7, identity: 0.781

tggtaaccggctctcggtatcagacctcgaaa	CRISPR spacer
ggccaaccggctctcgctatcagaccacgtta	Protospacer
 * .************ ********* **  *

9. spacer 1.4|454195|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013508 (Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence) position: , mismatch: 7, identity: 0.781

tggtaaccggctctcggtatcagacctcgaaa	CRISPR spacer
ggccaaccggctctcgctatcagaccacgtta	Protospacer
 * .************ ********* **  *

10. spacer 1.4|454195|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013519 (Rhizobium sp. N113 plasmid pRspN113b, complete sequence) position: , mismatch: 7, identity: 0.781

tggtaaccggctctcggtatcagacctcgaaa	CRISPR spacer
ggccaaccggctctcgctatcagaccacgtta	Protospacer
 * .************ ********* **  *

11. spacer 1.4|454195|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013492 (Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence) position: , mismatch: 7, identity: 0.781

tggtaaccggctctcggtatcagacctcgaaa	CRISPR spacer
ggccaaccggctctcgctatcagaccacgtta	Protospacer
 * .************ ********* **  *

12. spacer 1.4|454195|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013497 (Rhizobium sp. N621 plasmid pRspN621b, complete sequence) position: , mismatch: 7, identity: 0.781

tggtaaccggctctcggtatcagacctcgaaa	CRISPR spacer
ggccaaccggctctcgctatcagaccacgtta	Protospacer
 * .************ ********* **  *

13. spacer 1.4|454195|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013592 (Rhizobium sp. N871 plasmid pRspN871b, complete sequence) position: , mismatch: 7, identity: 0.781

tggtaaccggctctcggtatcagacctcgaaa	CRISPR spacer
ggccaaccggctctcgctatcagaccacgtta	Protospacer
 * .************ ********* **  *

14. spacer 1.4|454195|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NC_010996 (Rhizobium etli CIAT 652 plasmid pB, complete sequence) position: , mismatch: 7, identity: 0.781

tggtaaccggctctcggtatcagacctcgaaa	CRISPR spacer
ggccaaccggctctcgctatcagaccacgtta	Protospacer
 * .************ ********* **  *

15. spacer 2.4|463533|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to MN693543 (Marine virus AFVG_25M469, complete genome) position: , mismatch: 7, identity: 0.781

cgcaccactcgctggcgcagaaccc--ggtaaat	CRISPR spacer
ttcaccactagctggcgcagtacccatagtaa--	Protospacer
. ******* ********** ****  .****

16. spacer 2.14|464133|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018028 (Alteromonas mediterranea strain CP49 plasmid MCP49-600, complete sequence) position: , mismatch: 7, identity: 0.781

agaaacgcgctgcaaaagtaa-ttcgtgcattg	CRISPR spacer
agaaaggcgctacaaaagtaatttcatgaaca-	Protospacer
***** *****.********* ***.** *.

17. spacer 2.14|464133|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018025 (Alteromonas mediterranea strain CP48 plasmid pAMCP48-600, complete sequence) position: , mismatch: 7, identity: 0.781

agaaacgcgctgcaaaagtaa-ttcgtgcattg	CRISPR spacer
agaaaggcgctacaaaagtaatttcatgaaca-	Protospacer
***** *****.********* ***.** *.

18. spacer 2.20|464493|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NC_012919 (Photobacterium damselae subsp. piscicida plasmid pP9014 DNA, complete sequence) position: , mismatch: 7, identity: 0.781

aatagccagcttagtaaaaactgcattaaagg	CRISPR spacer
tatgaccagcttattaaaaaccgcattaagga	Protospacer
 **..******** *******.*******.*.

19. spacer 2.20|464493|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH548371 (Vibrio alginolyticus strain Vb1636 plasmid pVb1636, complete sequence) position: , mismatch: 7, identity: 0.781

aatagccagcttagtaaaaactgcattaaagg	CRISPR spacer
tatgaccagcttattaaaaaccgcattaagga	Protospacer
 **..******** *******.*******.*.

20. spacer 2.20|464493|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 7, identity: 0.781

aatagc-cagcttagtaaaaactgcattaaagg	CRISPR spacer
-ttatcacgacttattaaaagctgcattaaagg	Protospacer
  ** * *..**** *****.************

21. spacer 2.21|464553|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NC_049343 (Escherichia phage 500465-2, complete genome) position: , mismatch: 7, identity: 0.781

tgcagacgcacaaacacggtggcgtagaaact	CRISPR spacer
tgcatacgcataaacacggtggcgtgaaaggc	Protospacer
**** *****.**************..**. .

22. spacer 2.21|464553|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to KP063541 (Enterobacteria phage P88, complete genome) position: , mismatch: 7, identity: 0.781

tgcagacgcacaaacacggtggcgtagaaact	CRISPR spacer
tgcatacgcataaacacggtggcgtgaaaggc	Protospacer
**** *****.**************..**. .

23. spacer 2.2|463413|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to MT822288 (Erwinia phage pEp_SNUABM_12, complete genome) position: , mismatch: 8, identity: 0.75

ttgcgaagatggttcgttactcaagccaatcc	CRISPR spacer
aagcgaagatggttcgttcctcaatcctgcct	Protospacer
  **************** ***** ** ..*.

24. spacer 2.2|463413|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NC_048052 (Dickeya phage vB_DsoP_JA10, complete genome) position: , mismatch: 8, identity: 0.75

ttgcgaagatggttcgttactcaagccaatcc	CRISPR spacer
aagcgaagatggttcgttcctcaatcctgcca	Protospacer
  **************** ***** ** ..*

25. spacer 2.11|463953|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

gggtggtgtgcctgctgctgcgggtgcaatgg	CRISPR spacer
cgggggtgcgcctgctgctgcgggtgtccggc	Protospacer
 ** ****.*****************.   *

26. spacer 2.11|463953|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to MK305889 (Gordonia phage Mutzi, complete genome) position: , mismatch: 8, identity: 0.75

gggtggtgtgcctgctgctgcgggtgcaatgg	CRISPR spacer
agctggtgggcctgctgctgggggtgcggcga	Protospacer
.* ***** *********** ******...*.

27. spacer 2.11|463953|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.75

gggtggtgtgcctgctgctgcgggtgcaatgg	CRISPR spacer
tgtggaggcgcctgctgcggccggtgcaatgg	Protospacer
 *  *. *.********* ** **********

28. spacer 2.11|463953|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.75

gggtggtgtgcctgctgctgcgggtgcaatgg	CRISPR spacer
tgtggaggcgcctgctgcggccggtgcaatgg	Protospacer
 *  *. *.********* ** **********

29. spacer 2.11|463953|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.75

gggtggtgtgcctgctgctgcgggtgcaatgg	CRISPR spacer
tgtggaggcgcctgctgcggccggtgcaatgg	Protospacer
 *  *. *.********* ** **********

30. spacer 2.11|463953|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.75

gggtggtgtgcctgctgctgcgggtgcaatgg	CRISPR spacer
tgtggaggcgcctgctgcggccggtgcaatgg	Protospacer
 *  *. *.********* ** **********

31. spacer 2.11|463953|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to MN508817 (Yersinia phage JC221, partial genome) position: , mismatch: 8, identity: 0.75

gggtggtgtgcctgctgctgcgggtgcaatgg	CRISPR spacer
aggtttcttgcctgctgctggcggtgcaatga	Protospacer
.***  . ************  *********.

32. spacer 2.4|463533|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031599 (Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence) position: , mismatch: 9, identity: 0.719

cgcaccactcgctggcgcagaacccggtaaat	CRISPR spacer
acagcccctggctggcgcagaacccggcctat	Protospacer
   .** ** *****************.  **

33. spacer 2.11|463953|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

gggtggtgtgcctgctgctgcgggtgcaatgg	CRISPR spacer
tggtggtgtggctcctgctgcggggtgcccgg	Protospacer
 ********* ** **********     .**

34. spacer 2.12|464013|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to MG383452 (Escherichia phage FEC14, complete genome) position: , mismatch: 9, identity: 0.719

tgttactcctccagcaccgggtggtgtgcctg	CRISPR spacer
cggagatgatccatcacctggtggtgtgcctg	Protospacer
.*  . *  **** **** *************

35. spacer 1.11|454616|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021803 (Sinorhizobium meliloti strain USDA1021 plasmid accessoryA, complete sequence) position: , mismatch: 10, identity: 0.688

gtaaacggtatgtaccgccgccgcttgcaccc	CRISPR spacer
ccgctgagtttgtaccgccgccgctagcactc	Protospacer
 ..   .** *************** ****.*

36. spacer 2.4|463533|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015737 (Shinella sp. HZN7 plasmid pShin-01, complete sequence) position: , mismatch: 10, identity: 0.688

cgcaccactcgctggcgcagaacccggtaaat	CRISPR spacer
tcgaccaggcgctggcgcagaacccggccggc	Protospacer
.  ****  ******************. ...

37. spacer 2.4|463533|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcaccactcgctggcgcagaacccggtaaat	CRISPR spacer
tcgaccaggcgctggcgcagaacccggccggg	Protospacer
.  ****  ******************. ..

38. spacer 2.11|463953|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

gggtggtgtgcctgctgctgcgggtgcaatgg	CRISPR spacer
tgctggtgtgcctgctgccgctggtgtgggtc	Protospacer
 * ***************.** ****...

39. spacer 2.15|464193|32|NZ_CP015613|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 10, identity: 0.688

gtgacctgccaattatcagcgacccggcaaat	CRISPR spacer
gctacctgccgattaacagcgacccgagccgc	Protospacer
*. *******.**** **********.   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

788485 : 839935

Erwinia_phage(23.33%)

tRNA,plate,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006317703.1\|788485_789532_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_043912118.1\|789782_790544_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.6e-56	47.2
WP_006317705.1\|790537_791164_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.1e-34	49.4
WP_043912121.1\|791489_792476_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	7.9e-08	38.6
WP_004950287.1\|792530_793529_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	9.4e-33	37.6
WP_006317707.1\|793609_796165_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	8.0e-28	24.2
WP_006317708.1\|797053_797371_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_006317709.1\|797382_798744_+	PTS N,N'-diacetylchitobiose transporter subunit IIC	NA	NA	NA	NA
WP_006317710.1\|798792_800178_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA
WP_006317711.1\|800177_801041_+	transcriptional regulator ChbR	NA	NA	NA	NA
WP_006317712.1\|801194_801956_+	chitin disaccharide deacetylase	NA	NA	NA	NA
WP_006317713.1\|801990_803376_-	MFS transporter	NA	NA	NA	NA
WP_006317714.1\|803625_804114_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.7e-27	47.7
WP_004950320.1\|804226_805291_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	6.4e-112	61.6
WP_006317715.1\|805355_805862_+	recombination regulator RecX	NA	NA	NA	NA
WP_006317716.1\|805994_808622_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.1e-80	37.4
WP_004950328.1\|808874_809060_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_065505883.1\|810135_810702_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_065505884.1\|810698_811127_+	DedA family protein	NA	NA	NA	NA
WP_065505885.1\|811209_812772_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_065505886.1\|812938_813454_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_065505887.1\|813521_814811_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_065505888.1\|814852_815644_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_062790301.1\|815813_817175_+	signal recognition particle protein	NA	NA	NA	NA
WP_004932501.1\|817391_817640_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_065505889.1\|817658_818207_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_065505890.1\|818259_819027_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_004950372.1\|819081_819438_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_065505891.1\|819603_819822_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	2.8e-22	67.6
WP_065505892.1\|819911_821066_-	hypothetical protein	Q6K1G4	Salmonella_virus	8.5e-94	45.9
WP_065505893.1\|821062_821524_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	9.3e-44	66.7
WP_065505894.1\|821536_823594_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	1.7e-23	27.9
WP_013811556.1\|823586_823721_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.7e-11	78.9
WP_012005306.1\|823741_824029_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.8e-24	60.2
WP_006323695.1\|824092_824602_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.3e-65	69.0
WP_065505895.1\|824615_825785_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	4.4e-183	79.7
WP_065505896.1\|825926_826481_-\|tail	tail fiber assembly protein	A0A222YXY8	Escherichia_phage	2.0e-24	35.8
WP_065505897.1\|826482_828147_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	5.7e-59	53.0
WP_065505898.1\|828143_831437_-\|tail	phage tail protein I	A0A2L0V120	Salmonella_phage	4.2e-271	48.4
WP_065505899.1\|831429_832338_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.1e-123	76.8
WP_065505900.1\|832342_832693_-	GPW/gp25 family protein	F1BUP4	Erwinia_phage	2.9e-37	66.4
WP_065505901.1\|832689_833325_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	5.0e-64	58.4
WP_065505902.1\|833414_833879_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	3.5e-38	55.0
WP_065505903.1\|833948_834461_-	lysozyme	A0A218M4K3	Erwinia_phage	8.2e-57	64.1
WP_065505904.1\|834444_834663_-	hypothetical protein	B6SD15	Bacteriophage	2.8e-06	50.9
WP_065505905.1\|834666_834870_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	6.3e-21	67.2
WP_065505906.1\|835072_835267_-	hypothetical protein	NA	NA	NA	NA
WP_065505907.1\|835755_835977_-	TraR/DksA C4-type zinc finger protein	F1BUS2	Erwinia_phage	6.5e-11	50.0
WP_065505908.1\|836052_836358_-	hypothetical protein	NA	NA	NA	NA
WP_065505909.1\|836588_837485_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	1.2e-68	46.9
WP_004950379.1\|837531_838296_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_065505910.1\|838861_839935_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	5.8e-89	50.3

DBSCAN-SWA_2

1164141 : 1172795

Moumouvirus(14.29%)

tRNA,integrase

attL 1158424:1158437|attR 1175021:1175034

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1158424:1158437	attL	NA	NA	NA	NA
WP_006322340.1\|1164141_1165527_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	2.2e-43	34.1
WP_006322341.1\|1165589_1165802_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_006322343.1\|1165812_1166679_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	4.5e-31	34.0
WP_006322345.1\|1166888_1167089_+	hypothetical protein	NA	NA	NA	NA
WP_037432345.1\|1167085_1167379_+	hypothetical protein	NA	NA	NA	NA
WP_081304060.1\|1167721_1167991_+	phage antirepressor KilAC domain-containing protein	D0UIL6	Aggregatibacter_phage	4.2e-12	68.0
WP_006322348.1\|1167994_1168198_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_006322349.1\|1168194_1169745_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.7e-57	39.2
WP_006322351.1\|1169755_1170679_+	hypothetical protein	A0A2D1GNR4	Pseudomonas_phage	4.2e-35	34.0
WP_006322353.1\|1171156_1172371_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	5.2e-134	57.0
WP_073970545.1\|1172570_1172795_-\|integrase	tyrosine-type recombinase/integrase	K7PHM9	Enterobacterial_phage	1.0e-19	74.6
1175021:1175034	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1858966 : 1909909

uncultured_Caudovirales_phage(28.57%)

plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_193395142.1\|1858966_1860718_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_006320724.1\|1860927_1861386_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_006320723.1\|1861487_1862564_-	porin OmpA	NA	NA	NA	NA
WP_006320722.1\|1862922_1863429_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_006320721.1\|1863662_1864322_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_006320720.1\|1864322_1866458_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_006320719.1\|1866484_1866937_-	YccF domain-containing protein	NA	NA	NA	NA
WP_006320717.1\|1867103_1869158_+	DNA helicase IV	A7KV33	Bacillus_phage	1.7e-15	26.6
WP_006320716.1\|1869191_1869650_-	methylglyoxal synthase	NA	NA	NA	NA
WP_006320715.1\|1869772_1870444_-	DUF2057 family protein	NA	NA	NA	NA
WP_006320714.1\|1870703_1871117_+	CoA-binding protein	NA	NA	NA	NA
WP_004942817.1\|1871178_1871496_-	heat shock protein HspQ	NA	NA	NA	NA
WP_006320713.1\|1871557_1872748_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_006320712.1\|1872838_1873117_+	acylphosphatase	NA	NA	NA	NA
WP_004942823.1\|1873120_1873450_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_004942825.1\|1873561_1874221_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.8e-41	48.4
WP_006320684.1\|1875344_1875842_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_006320681.1\|1875876_1877424_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_006320680.1\|1877437_1878775_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_006320678.1\|1878771_1879425_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_065506126.1\|1879428_1881156_+	OmpA family protein	NA	NA	NA	NA
WP_006317216.1\|1881159_1881651_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_006317215.1\|1881680_1882088_+	hypothetical protein	NA	NA	NA	NA
WP_065506127.1\|1882276_1884928_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.1e-96	32.5
WP_006317385.1\|1884942_1885398_+	hypothetical protein	A0A218M4J4	Erwinia_phage	2.4e-20	42.7
WP_006317383.1\|1885394_1885715_+	DUF1493 family protein	NA	NA	NA	NA
WP_065506128.1\|1885783_1888330_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	4.0e-03	28.7
WP_006321995.1\|1888404_1890240_+	lipase family protein	A0A2R8FER2	Brazilian_cedratvirus	6.9e-05	29.7
WP_148661015.1\|1890223_1891003_+	hypothetical protein	NA	NA	NA	NA
WP_006321997.1\|1891233_1891836_+	hypothetical protein	NA	NA	NA	NA
WP_006322000.1\|1892117_1892384_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_006322001.1\|1892387_1893542_+	hypothetical protein	NA	NA	NA	NA
WP_006322002.1\|1893528_1896939_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_006322003.1\|1896938_1898531_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_006322004.1\|1898555_1900319_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_006322006.1\|1900273_1901374_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_148661057.1\|1901354_1901891_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_043911970.1\|1903170_1903812_+	hypothetical protein	NA	NA	NA	NA
WP_006316694.1\|1906750_1908586_+	lipase family protein	G9E505	Ostreococcus_lucimarinus_virus	6.0e-09	30.8
WP_148661016.1\|1908569_1909322_+	hypothetical protein	NA	NA	NA	NA
WP_065506131.1\|1909462_1909909_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_4

2010059 : 2069834

Escherichia_phage(25.0%)

transposase,tail,integrase

attL 2031338:2031352|attR 2075497:2075511

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006322504.1\|2010059_2011067_+	DNA polymerase III subunit delta'	A0A1U9WR94	Streptococcus_virus	9.9e-06	30.8
WP_006322503.1\|2011081_2011858_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_006322502.1\|2012194_2013628_+	PTS glucose transporter subunit IIBC	NA	NA	NA	NA
WP_006322501.1\|2013777_2013999_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	8.5e-19	59.7
WP_006322500.1\|2014072_2015164_-	phage late control D family protein	E5G6Q3	Salmonella_phage	2.2e-112	55.2
WP_148661059.1\|2015374_2015575_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	6.1e-08	53.3
WP_006322491.1\|2015553_2015907_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	1.2e-19	54.4
WP_006322489.1\|2015982_2016498_-\|tail	phage major tail tube protein	Q37845	Escherichia_phage	3.3e-58	65.7
WP_006322488.1\|2016508_2017681_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.6e-183	81.4
WP_148661060.1\|2018298_2018922_-	hypothetical protein	A0A0F7LBP9	Escherichia_phage	1.7e-80	70.0
WP_081304009.1\|2018996_2020217_-	RNA-directed DNA polymerase	A0A0F7LDS3	Escherichia_phage	4.2e-176	76.6
WP_006322480.1\|2022102_2023017_+	hypothetical protein	NA	NA	NA	NA
WP_043913312.1\|2023261_2024068_+	hypothetical protein	NA	NA	NA	NA
WP_006322476.1\|2024645_2025641_-	hypothetical protein	NA	NA	NA	NA
WP_006322474.1\|2025776_2026121_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	6.1e-16	42.1
WP_006322471.1\|2027520_2028471_+	hypothetical protein	NA	NA	NA	NA
WP_006322470.1\|2028720_2029191_-	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA
WP_006322469.1\|2029420_2030725_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_006322468.1\|2030871_2031444_-	SH3 domain-containing protein	NA	NA	NA	NA
2031338:2031352	attL	NA	NA	NA	NA
WP_006322467.1\|2031614_2032361_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.1e-16	31.2
WP_081304012.1\|2032460_2032838_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_006322465.1\|2032834_2033740_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_006322464.1\|2033982_2034333_+	purine nucleoside phosphoramidase	NA	NA	NA	NA
WP_006322463.1\|2034345_2034735_+	YcfL family protein	NA	NA	NA	NA
WP_006322462.1\|2034761_2035355_+	penicillin-binding protein activator LpoB	NA	NA	NA	NA
WP_006322461.1\|2035335_2036205_+	thiamine kinase	NA	NA	NA	NA
WP_043913309.1\|2036236_2037256_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_006322459.1\|2037331_2037874_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_006322458.1\|2038206_2039511_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_006322457.1\|2039872_2040409_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_006322456.1\|2040698_2041184_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_006322455.1\|2041263_2044407_-	multidrug efflux RND transporter permease subunit SdeB	NA	NA	NA	NA
WP_006322454.1\|2044431_2045634_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_006322453.1\|2045928_2046279_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_071919892.1\|2046319_2047468_-	HNH endonuclease	NA	NA	NA	NA
WP_006322450.1\|2047468_2048167_-	OmpA family protein	NA	NA	NA	NA
WP_006322449.1\|2048166_2049933_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_065506132.1\|2051719_2053186_+	MFS transporter	NA	NA	NA	NA
WP_148661018.1\|2053250_2054614_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	9.4e-76	51.9
WP_006317286.1\|2054765_2055707_+	glyoxylate/hydroxypyruvate reductase GhrA	NA	NA	NA	NA
WP_006317285.1\|2055788_2056526_+	phosphatase	NA	NA	NA	NA
WP_006317276.1\|2056567_2057146_+	molecular chaperone	NA	NA	NA	NA
WP_006317273.1\|2057314_2057968_+	DUF533 domain-containing protein	NA	NA	NA	NA
WP_006317272.1\|2058036_2060070_+	prolyl oligopeptidase family serine peptidase	A0A1V0SHT0	Klosneuvirus	1.7e-36	27.5
WP_006317271.1\|2060103_2060772_-	exodeoxyribonuclease X	A0A1W5PTR6	Pseudoalteromonas_phage	9.8e-18	30.9
WP_006317270.1\|2060798_2061545_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_006317268.1\|2061921_2062347_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_004943115.1\|2062506_2063460_+	prolyl aminopeptidase	NA	NA	NA	NA
WP_004943118.1\|2063489_2063720_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.8e-16	63.2
WP_065506133.1\|2064092_2064611_+	non-heme ferritin	NA	NA	NA	NA
WP_065506134.1\|2064917_2065301_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_065506135.1\|2065303_2066185_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_004943126.1\|2066254_2066596_+	YebY family protein	NA	NA	NA	NA
WP_065506137.1\|2068681_2069137_+	hypothetical protein	NA	NA	NA	NA
WP_065506138.1\|2069339_2069834_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	6.3e-38	50.6
2075497:2075511	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015613

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection