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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017904 Mycobacterium sp. MOTT36Y, complete sequence 4 crisprs DEDDh,cas3,csa3,DinG,cas4,WYL,c2c9_V-U4 0 1 4 0

Results visualization

1. NC_017904
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017904_1 25887-25972 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017904_2 1323314-1323396 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017904_3 1536004-1536087 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017904_4 2358036-2358149 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017904_1 1.1|25913|34|NC_017904|CRISPRCasFinder 25913-25946 34 NZ_CP007795 Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence 555402-555435 8 0.765
NC_017904_1 1.1|25913|34|NC_017904|CRISPRCasFinder 25913-25946 34 NZ_CP032323 Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence 549521-549554 8 0.765
NC_017904_1 1.1|25913|34|NC_017904|CRISPRCasFinder 25913-25946 34 NZ_CP012916 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence 187854-187887 9 0.735
NC_017904_1 1.1|25913|34|NC_017904|CRISPRCasFinder 25913-25946 34 NZ_CP022363 Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence 283810-283843 9 0.735
NC_017904_1 1.1|25913|34|NC_017904|CRISPRCasFinder 25913-25946 34 NZ_CP032341 Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence 52186-52219 9 0.735
NC_017904_1 1.1|25913|34|NC_017904|CRISPRCasFinder 25913-25946 34 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 570738-570771 9 0.735
NC_017904_1 1.1|25913|34|NC_017904|CRISPRCasFinder 25913-25946 34 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 1389609-1389642 9 0.735
NC_017904_1 1.1|25913|34|NC_017904|CRISPRCasFinder 25913-25946 34 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 143016-143049 9 0.735
NC_017904_1 1.1|25913|34|NC_017904|CRISPRCasFinder 25913-25946 34 NZ_CP033321 Azospirillum brasilense strain Cd plasmid p3, complete sequence 279122-279155 9 0.735
NC_017904_1 1.1|25913|34|NC_017904|CRISPRCasFinder 25913-25946 34 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 1561646-1561679 9 0.735

1. spacer 1.1|25913|34|NC_017904|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 8, identity: 0.765

gcgctggtcctggtagcccggctgcggcgggtaa	CRISPR spacer
gaactggtgcaggtagcccggctgcggcgacaca	Protospacer
* .***** * ******************.   *

2. spacer 1.1|25913|34|NC_017904|CRISPRCasFinder matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

gcgctggtcctggtagcccggctgcggcgggtaa-	CRISPR spacer
gaactggtgcaggtagcccggctgcgg-ggacacc	Protospacer
* .***** * **************** **..*  

3. spacer 1.1|25913|34|NC_017904|CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctggtcctggtagcccggctgcggcgggtaa	CRISPR spacer
gaactggtgcaggtagcccggctgcggcgacacc	Protospacer
* .***** * ******************.    

4. spacer 1.1|25913|34|NC_017904|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctggtcctggtagcccggctgcggcgggtaa	CRISPR spacer
gaactggtgcaggtagcccggctgcggcgacacc	Protospacer
* .***** * ******************.    

5. spacer 1.1|25913|34|NC_017904|CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctggtcctggtagcccggctgcggcgggtaa	CRISPR spacer
gaactggtgcaggtagcccggctgcggcgacacc	Protospacer
* .***** * ******************.    

6. spacer 1.1|25913|34|NC_017904|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctggtcctggtagcccggctgcggcgggtaa	CRISPR spacer
ctgatcgtcctgatcgcccggctgcggcgggagg	Protospacer
 .* * ******.* **************** ..

7. spacer 1.1|25913|34|NC_017904|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctggtcctggtagcccggctgcggcgggtaa	CRISPR spacer
ctgatcgtcctgatcgcccggctgcggcgggagg	Protospacer
 .* * ******.* **************** ..

8. spacer 1.1|25913|34|NC_017904|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctggtcctggtagcccggctgcggcgggtaa	CRISPR spacer
ctgatcgtcctgatcgcccggctgcggcgggagg	Protospacer
 .* * ******.* **************** ..

9. spacer 1.1|25913|34|NC_017904|CRISPRCasFinder matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctggtcctggtagcccggctgcggcgggtaa	CRISPR spacer
ctgatcgtcctgatcgcccggctgcggcgggagg	Protospacer
 .* * ******.* **************** ..

10. spacer 1.1|25913|34|NC_017904|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.735

gcgctggtcctggtagcccggctgcggcgggtaa	CRISPR spacer
ctgatcgtcctgatcgcccggctgcggcgggagg	Protospacer
 .* * ******.* **************** ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2356896 : 2428588 56 uncultured_virus(66.67%) transposase,holin NA
DBSCAN-SWA_2 3448376 : 3457415 8 Shahe_endorna-like_virus(50.0%) NA NA
DBSCAN-SWA_3 4139558 : 4146656 8 Bacillus_phage(28.57%) NA NA
DBSCAN-SWA_4 4688125 : 4698120 9 Burkholderia_phage(42.86%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage