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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017986 Pseudomonas putida ND6, complete genome 3 crisprs RT,csa3,cas3,DEDDh,WYL,DinG 0 0 11 0
NZ_AY208917 Pseudomonas putida ND6 plasmid pND6-1, complete sequence 0 crisprs NA 0 0 9 0
NC_018746 Pseudomonas putida ND6 plasmid pND6-2, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NC_017986
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017986_1 521012-521160 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017986_2 4106779-4106895 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017986_3 5525260-5525369 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 341493 : 348589 10 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_2 566534 : 602734 31 Ectocarpus_siliculosus_virus(66.67%) coat,protease NA
DBSCAN-SWA_3 1840352 : 1899951 54 Shigella_phage(12.5%) transposase,integrase,protease attL 1866456:1866475|attR 1900628:1900647
DBSCAN-SWA_4 2961165 : 3022058 60 Bacillus_virus(30.0%) transposase,protease,holin NA
DBSCAN-SWA_5 3779224 : 3787004 10 Thermobifida_phage(16.67%) NA NA
DBSCAN-SWA_6 4067613 : 4131971 74 uncultured_Caudovirales_phage(48.72%) holin,plate,terminase,head,tail,lysis,capsid,tRNA,portal NA
DBSCAN-SWA_7 4786649 : 4797270 11 uncultured_Caudovirales_phage(66.67%) tRNA NA
DBSCAN-SWA_8 4884110 : 4958131 96 Pseudomonas_phage(41.07%) protease,terminase,head,tail,transposase,capsid,integrase,portal attL 4892628:4892669|attR 4947869:4947910
DBSCAN-SWA_9 5232766 : 5240573 11 uncultured_Caudovirales_phage(57.14%) NA NA
DBSCAN-SWA_10 5522760 : 5598374 71 uncultured_Caudovirales_phage(60.61%) protease,holin,plate,terminase,head,tail,lysis,capsid,portal NA
DBSCAN-SWA_11 5807490 : 5869166 58 Burkholderia_virus(100.0%) integrase,transposase attL 5848591:5848607|attR 5881575:5881591
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_AY208917
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 8660 10 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_2 19053 : 19962 1 Microcystis_phage(100.0%) NA NA
DBSCAN-SWA_3 24470 : 25760 1 Lysinibacillus_phage(100.0%) transposase NA
DBSCAN-SWA_4 30473 : 36491 7 Erythrobacter_phage(33.33%) NA NA
DBSCAN-SWA_5 44885 : 47316 3 Pseudomonas_phage(66.67%) NA NA
DBSCAN-SWA_6 50963 : 54172 3 Ralstonia_phage(50.0%) integrase attL 47577:47589|attR 53919:53931
DBSCAN-SWA_7 72704 : 85993 14 uncultured_Caudovirales_phage(25.0%) transposase NA
DBSCAN-SWA_8 92546 : 93149 1 Shigella_phage(100.0%) NA NA
DBSCAN-SWA_9 99161 : 100145 1 uncultured_Mediterranean_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NC_018746
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 43074 : 51698 12 Pseudomonas_virus(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage