CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP006665	Edwardsiella anguillarum ET080813 strain 80813 plasmid 1, complete sequence	0 crisprs	csa3	0	0	1	0
NZ_CP006664	Edwardsiella anguillarum ET080813 strain 80813 chromosome, complete genome	5 crisprs	csa3,cas3,DEDDh,WYL,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,DinG	1	12	11	1
NZ_CP006666	Edwardsiella anguillarum ET080813 strain 80813 plasmid 2, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4344 : 47549

Salmonella_phage(38.46%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000844627.1\|4344_4587_-\|transposase	transposase	NA	NA	NA	NA
WP_001114073.1\|5762_6116_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	4.1e-23	50.0
WP_000783215.1\|6163_6526_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_001556710.1\|6543_8295_+	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_000134999.1\|9421_10063_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000608644.1\|10302_11565_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_000065758.1\|12403_12829_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.2e-50	70.7
WP_000110555.1\|12859_13234_-	arsenic transporter ATPase	NA	NA	NA	NA
WP_001556711.1\|13268_13841_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-83	89.0
WP_034165922.1\|14004_17013_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	64.4
WP_001044210.1\|17387_17528_+	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|18013_18751_+	recombinase family protein	NA	NA	NA	NA
WP_000743213.1\|18747_18972_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|19182_20676_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_071881958.1\|20706_20958_+	hypothetical protein	NA	NA	NA	NA
WP_001043260.1\|21240_22056_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000954592.1\|22385_22562_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_040145017.1\|22743_23748_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001138070.1\|23826_26793_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
WP_003124096.1\|26795_27356_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	2.1e-50	88.6
WP_000019440.1\|27836_28817_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	99.1
WP_034164970.1\|29611_30490_+	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_034164969.1\|30625_30859_+	hypothetical protein	NA	NA	NA	NA
WP_071881959.1\|31312_31582_-	hypothetical protein	NA	NA	NA	NA
WP_034164968.1\|31807_33304_+	ATP-dependent helicase	A0A075DXT4	Acinetobacter_phage	7.7e-47	30.2
WP_034164967.1\|33450_34494_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_034164966.1\|34495_35932_+	conjugal transfer protein TraH	NA	NA	NA	NA
WP_034164965.1\|35947_39499_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_051905134.1\|39534_39930_-	hypothetical protein	NA	NA	NA	NA
WP_034171872.1\|40903_41170_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_071881960.1\|41169_41703_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_071881961.1\|41713_42322_+	transcriptional regulator	NA	NA	NA	NA
WP_095666588.1\|42321_42894_+	regulator	NA	NA	NA	NA
WP_034164964.1\|42951_43377_-	H-NS histone family protein	NA	NA	NA	NA
WP_158407661.1\|43681_44536_-	plasmid stability protein StbA	A7KUY1	Bacillus_phage	6.2e-09	23.9
WP_034164963.1\|44561_47549_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	3.2e-294	53.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP006664

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP006664_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006664_1

2675463-2676345

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTCTTCCCCACGTCCGTGGGGGTGTTTC	PILER-CR
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CRISPRCasFinder
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CRT

14 spacers

cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3,WYL

The CRISPR arrays of NZ_CP006664_1

>merge|NZ_CP006664|1|2675463-2676345|PILER-CR,CRISPRCasFinder,CRT
GTCTTCCCCACGTCCGTGGGGGTGTTTCCTCGGCATGATTACCGATAGCGATAAAGCTGCTGTCTTCCCCACGTCCGTGGGGGTGTTTCTTCCGGGCAGGACGACCACTTCACGGCTGATGTAGTCTTCCCCACGTCCGTGGGGGTGTTTCTGCTTATGGAGCCGGAAACATGCGCGTACTAAAGTCTTCCCCACGTCCGTGGGGGTGTTTCTGCAACTACTCAACATCGTAGCGCCGAAAGGAAGTCTTCCCCACGTCCGTGGGGGTGTTTCTCAGCAGCACACCAATGATCCACTCAATGTGACGTCTTCCCCACGTCCGTGGGGGTGTTTCTCTGGCCCACGAAAAAACACCCTGGCGCCGGGGGTCTTCCCCACGTCCGTGGGGGTGTTTCCGTTTGGTGATGTTAGTTGCGCTGATCGTCTCCGTCTTCCCCACGTCCGTGGGGGTGTTTCTCGCCGACAGCGCACTCAGCGCCGACGCGGCCTGTCTTCCCCACGTCCGTGGGGGTGTTTCTCGTTGAGCCAGTCTTTTTCCATGTATGTGCCGGTCTTCCCCACGTCCGTGGGGGTGTTTCCGACGCTTTAAGCTCTACACCGGTCGCCTGAGCGTCTTCCCCACGTCCGTGGGGGTGTTTCTGATTGATGGCTGTGTAGCGCGGTTACGTAAATGTCTTCCCCACGTCCGTGGGGGTGTTTCCAATCGGCAACGATCCAAAATGGTTGTCATGAGGTCTTCCCCACGTCCGTGGGGGTGTTTCCGTACAAGGCGCTGTTAGCCGGAACCAAATTGCGTCTTCCCCACGTCCGTGGGGGTGTTTCTCTCACACCTATCTGTCCGGCAACATCGAGTGCGTCTTCCCCACGTCCGAGGGGTGTTTCC

>NZ_CP006664|1|1|2675463-2676284|PILER-CR
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CTCGGCATGATTACCGATAGCGATAAAGCTGCT
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TTCCGGGCAGGACGACCACTTCACGGCTGATGTA
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TGCTTATGGAGCCGGAAACATGCGCGTACTAAA
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TGCAACTACTCAACATCGTAGCGCCGAAAGGAA
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCAGCAGCACACCAATGATCCACTCAATGTGAC
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCTGGCCCACGAAAAAACACCCTGGCGCCGGGG
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CGTTTGGTGATGTTAGTTGCGCTGATCGTCTCC
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCGCCGACAGCGCACTCAGCGCCGACGCGGCCT
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCGTTGAGCCAGTCTTTTTCCATGTATGTGCCG
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CGACGCTTTAAGCTCTACACCGGTCGCCTGAGC
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TGATTGATGGCTGTGTAGCGCGGTTACGTAAAT
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CAATCGGCAACGATCCAAAATGGTTGTCATGAG
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CGTACAAGGCGCTGTTAGCCGGAACCAAATTGC
GTCTTCCCCACGTCCGTGGGGGTGTTTC

>NZ_CP006664|1|1|2675463-2676345|CRISPRCasFinder
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CTCGGCATGATTACCGATAGCGATAAAGCTGCT
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TTCCGGGCAGGACGACCACTTCACGGCTGATGTA
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TGCTTATGGAGCCGGAAACATGCGCGTACTAAA
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TGCAACTACTCAACATCGTAGCGCCGAAAGGAA
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCAGCAGCACACCAATGATCCACTCAATGTGAC
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCTGGCCCACGAAAAAACACCCTGGCGCCGGGG
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CGTTTGGTGATGTTAGTTGCGCTGATCGTCTCC
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCGCCGACAGCGCACTCAGCGCCGACGCGGCCT
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCGTTGAGCCAGTCTTTTTCCATGTATGTGCCG
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CGACGCTTTAAGCTCTACACCGGTCGCCTGAGC
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TGATTGATGGCTGTGTAGCGCGGTTACGTAAAT
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CAATCGGCAACGATCCAAAATGGTTGTCATGAG
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CGTACAAGGCGCTGTTAGCCGGAACCAAATTGC
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCTCACACCTATCTGTCCGGCAACATCGAGTGC
GTCTTCCCCACGTCCGAGGGGTGTTTCC

>NZ_CP006664|1|1|2675463-2676345|CRT
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CTCGGCATGATTACCGATAGCGATAAAGCTGCT
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TTCCGGGCAGGACGACCACTTCACGGCTGATGTA
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TGCTTATGGAGCCGGAAACATGCGCGTACTAAA
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TGCAACTACTCAACATCGTAGCGCCGAAAGGAA
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCAGCAGCACACCAATGATCCACTCAATGTGAC
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCTGGCCCACGAAAAAACACCCTGGCGCCGGGG
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CGTTTGGTGATGTTAGTTGCGCTGATCGTCTCC
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCGCCGACAGCGCACTCAGCGCCGACGCGGCCT
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCGTTGAGCCAGTCTTTTTCCATGTATGTGCCG
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CGACGCTTTAAGCTCTACACCGGTCGCCTGAGC
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TGATTGATGGCTGTGTAGCGCGGTTACGTAAAT
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CAATCGGCAACGATCCAAAATGGTTGTCATGAG
GTCTTCCCCACGTCCGTGGGGGTGTTTC	CGTACAAGGCGCTGTTAGCCGGAACCAAATTGC
GTCTTCCCCACGTCCGTGGGGGTGTTTC	TCTCACACCTATCTGTCCGGCAACATCGAGTGC
GTCTTCCCCACGTCCGAGGGGTGTTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006664.1\|WP_034165837.1\|2684119_2684761_+\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|319255
NZ_CP006664.1\|WP_144242817.1\|2685917_2686343_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_144242815.1\|2682671_2682854_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_144242812.1\|2680820_2681345_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340265
NZ_CP006664.1\|WP_158407646.1\|2687337_2687541_-\|transposase	unknown	unknown	gnl\|CDD\|377437
NZ_CP006664.1\|WP_034165906.1\|2673547_2674261_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP006664.1\|WP_144242816.1\|2685523_2685886_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_034165912.1\|2666169_2667174_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP006664.1\|WP_034165909.1\|2671331_2671856_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP006664.1\|WP_034165908.1\|2671852_2672488_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|273869
NZ_CP006664.1\|WP_071844203.1\|2682893_2684135_+\|DUF3440-domain-containing-protein	unknown	unknown	gnl\|CDD\|226478
NZ_CP006664.1\|WP_034165910.1\|2669850_2671335_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP006664.1\|WP_072006773.1\|2682304_2682634_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366664
NZ_CP006664.1\|WP_071844205.1\|2675123_2675411_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|187779
NZ_CP006664.1\|WP_144242813.1\|2681657_2682257_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_144242811.1\|2665502_2665919_-\|EAST1-family-heat-stable-enterotoxin	unknown	unknown	gnl\|CDD\|307151
NZ_CP006664.1\|WP_034165905.1\|2674264_2675143_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP006664.1\|WP_034165907.1\|2672500_2673544_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP006664.1\|WP_034165911.1\|2667201_2669847_+\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP006664.1\|WP_071881910.1\|2680288_2680873_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|226233

Protein	Function_ID	Function_description	E-value
NZ_CP006664.1\|WP_034165837.1\|2684119_2684761_+\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|319255	cd16397, IbrB_like, immunoglobulin-binding regulator IbrB activates eib genes. IbrB (along with IbrA) activates immunoglobulin-binding eib genes in Escherichia coli. IbrB is related to the ParB N-terminal domain family, which includes DNA-binding proteins involved in chromosomal/plasmid segregation and transcriptional regulation, consistent with a possible mechanism for IbrB in DNA binding-related regulation of eib expression. The ParB like family is a diverse domain superfamily with structural and sequence similarity to ParB of bacterial chromosomes/plasmid parABS partitioning system and Sulfiredoxin (Srx), which is a reactivator of oxidatively inactivated 2-cys peroxiredoxins. Other families includes proteins related to StrR, a putative regulator in the biosynthetic gene cluster and a family containing a Pyrococcus furiosus nuclease and putative transcriptional regulators SbnI (Staphylococcus aureus siderophore biosynthetic gene cluster ) and EdeB (Brevibacillus brevis antimicrobial peptide edeine biosynthetic cluster). Nuclease activity has also been reported in arabidopsis Srx.	2.78189e-49
NZ_CP006664.1\|WP_144242812.1\|2680820_2681345_+\|hypothetical-protein	gnl\|CDD\|340265	pfam17550, PsaF, Family of unknown function. This is a family of unknown function found in Yersinia pestis.	4.51064e-16
NZ_CP006664.1\|WP_158407646.1\|2687337_2687541_-\|transposase	gnl\|CDD\|377437	pfam04986, Y2_Tnp, Putative transposase. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801. This is a rolling-circle transposase.	9.20569e-11
NZ_CP006664.1\|WP_034165906.1\|2673547_2674261_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	5.02708e-51
NZ_CP006664.1\|WP_034165912.1\|2666169_2667174_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	3.49235e-41
NZ_CP006664.1\|WP_034165909.1\|2671331_2671856_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.51241e-23
NZ_CP006664.1\|WP_034165908.1\|2671852_2672488_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	6.55027e-47
NZ_CP006664.1\|WP_071844203.1\|2682893_2684135_+\|DUF3440-domain-containing-protein	gnl\|CDD\|226478	COG3969, COG3969, Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only].	0
NZ_CP006664.1\|WP_034165910.1\|2669850_2671335_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.00346e-69
NZ_CP006664.1\|WP_072006773.1\|2682304_2682634_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	1.39641e-07
NZ_CP006664.1\|WP_071844205.1\|2675123_2675411_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187779	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.6034e-31
NZ_CP006664.1\|WP_144242811.1\|2665502_2665919_-\|EAST1-family-heat-stable-enterotoxin	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.98045e-16
NZ_CP006664.1\|WP_034165905.1\|2674264_2675143_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.92097e-121
NZ_CP006664.1\|WP_034165907.1\|2672500_2673544_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.34554e-110
NZ_CP006664.1\|WP_034165911.1\|2667201_2669847_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	6.1664e-86
NZ_CP006664.1\|WP_071881910.1\|2680288_2680873_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	9.94301e-17

>NZ_CP006664.1|WP_071844205.1|2675123_2675411_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLIVLANDLPPAVRGRMKLWFIEPRPNTFVSGIKDSVADTVIEYLYQHCSPAAGVVIFKSIARTPGYQIHTIGSPTKTLCEINGLQLVIEKRLEQ
>NZ_CP006664.1|WP_034165905.1|2674264_2675143_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSRGQRLFVKITRESLPQVKDKYPFIYLERGRLEIDDSSLKWLDAEGQVVRLPVATLNAILLGPGTSLTHEAVKTAAAANCAICWVGEDSLLFYAAGFLPTASTRNLQHQMRLACNKKSSLEVARRMFAYRFPDADLAGKSLKEMMGMEGSRVRALYQQKAQQYGVGWRGRQYIPGKMEISDTTNRVLTSANAALYGILCSALHAMGYSPHMGFIHSGSPLPFVYDLADLYKENLCIDLAFSLTREMAGRYEKALVSSRFRERVIELNLLASVARDIPQLLGGANIDADSAS
>NZ_CP006664.1|WP_034165906.1|2673547_2674261_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQPYLLLWLEGPLQSWGHDSRFGRRETLPFPTKSGVLGVVCAALGASGPQTSLLAQFADLDMQVHSFARRDKNGALVPREPLLRDFHMVGSGYDDRDPWQSLLIPKTREGKKAVGGGIKMTYRYYLQDQAFAVLLQTPAGLLTEVVLALQNPVWDLSLGRKTCVPSEFIFQGQFANRDDALTAALNLAEQKQRTQDFMVVQGATEGGELLTLNDVPLQFGQHKRYRDRQVTLINEG
>NZ_CP006664.1|WP_034165907.1|2672500_2673544_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MNNALKNTRIEFHILQSFPVTCLNRDDVGAPKTAVVGGVTRARVSSQCWKRQVRLAMQAFGIKLGIRTKKVADLVTEHCIKLGAAQEPAQACASKIAELLADDTLLFISDSEAEALADYAREQEFDSNKIKDKELAKRAKKNLNPALDALDIALFGRMVAKAADMNVEAAASFSHAISTHKVANEVEFFTALDDRQDEPGSAHMGGLEFNSATYYRYISLDLGQLADTMGGDELNKDQLKQAIAAFTKALFVAVPAARQTTQSGASPWEFAKVLVRKGQRLQVPFDEPVKAAGRGFLVPSVAALKGYISKKEALTGSLFGKLGDYEWGEDEAFSVDHLIAKLQNHVE
>NZ_CP006664.1|WP_034165908.1|2671852_2672488_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTLYASVLRLDRAAVKALRVTDLYSLHRVVYTLFEDVRSEMQKQASVPSGIQWVDKGGDHRCRQILLLSDRLPQTGEYGEVESRPLPDDFLAHRHYRFAVTVSPTRRDNQSRQLKPVKGREAIADWFIERAATNWGFYIDPERIQVDDVRVAQFKGNAERAITLQQATLSGYLTVTDPERFAMSVANGVGRGRAFGCGLLQVVPLIELPLF
>NZ_CP006664.1|WP_034165909.1|2671331_2671856_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNTQPQASQRREVDFVAYLCQRCQNDKGFAARLRRADNPATEYQSWDTLAAFGINLEWAEERQPFALIAAAVARSDQACNGTLPLGQAIALAFSEGRESDQAKARLRRLLACDDTEEVCRILRPLLTLIRSRVNQPLDYAALLVDLRWFHRSADRAKARWAQQFYGRQEKEITV
>NZ_CP006664.1|WP_034165910.1|2669850_2671335_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MEHRFNLIDEPWIPVADKGRVGLKDIFTHPEYRMLGGNPVQKAAILKLLQAIAQAATTPKDMAAWQQLGWQGMAERVCRYLAQWHDRFYLYGPTPFLQMPAIAKAAIKSFGTVQPNVATGNTTVLTQSQAEQPLDDGERALLLITQMGFALGGKKTDNSVVLTPGYTGKSNDKGKPSTGKPGPSVAYMGLLHNYCLGTSLLESIWLNLFTEAEIADLTLYPSGLGIAPWEKMPEGEDCQVAKQLKGSLMGRLVPLCRFCLLADEGLHYSEGIAHGNYKEGVFDPSVAIDISGKEPKARWADPERRPWRELTSLLGFIDQGGKSLDCYQIKLALRKAKKQVAHFAIWSGGLRVSSNAGEQYASGSDDMVESLCWLSPSHVNALWFNRFQTEIGQLDGLAKTLYGCVIGYYKAQMMEGESLAKQASNLFWQLCERQSQALIDGCDEVKARQQLRRQFARYTTQVFDQFCPHQTARQMDAWAKTKPNLSAYLQQEQS
>NZ_CP006664.1|WP_034165911.1|2667201_2669847_+|CRISPR-associated-helicase-Cas3'
MINRRRKAADTESPIAAVPFELCPAKTYKDRQGVPHLGRSVFNHCQIVGQTAKTLLERIPATIRHSLFPPGSALQAALHDIGKVSPVFFLKLQCAVEGDHSSWLQRMPQFRAIQECEWGGHAGVSELALAAITSNPFVPSIAGQHHGFNPPEVMLTADAPPLGGEPWQTERCKLVAALQRAMGEAIPIITTPAQARILAGLTTVADWIGSGPHFEDPAIPWQPRIGQALDDAGFVLPQVRHGLTFGDIFTAEDGTPYQPNEPQQLLHQHSQGVGVYVLEAPMGLGKTEAALYAAYKMLEEGKATGIYFALPTQLTSNKLLDRFNGYLKQILTAESPHRHSLLLHGSAWLVNQEWGEEGKPGRSWFDSAKRGLLAPFAVGTLDQALMAAMNVKHGFVRAFGLAGKVVILDEVHSYDAYTGVILDELIRLLRTLHCTVIILSATLSQARRSELLGQPAQRDAYPLISVSPGITPSPLQELPVTPEASRAVHLQCKAMADQTVLEEVLKRAAQDQQVLWIENTVAEAQERYLDLAARAQELGVACGLLHSRFTALHRQKNEAHWVGCYGKVGRAARREQGRILIGTQVLEQSLDIDADFLVSRMAPSDMLFQRLGRLWRHEQTPRPPEASREAWILAPDLDTARQDPYQAFGATAHVYSPYLLCRSLEVWLVQVKEGMVSLPDHIRTLVESTYRERDEDDAMVRWKRELFEGSHRRKGVNTLRQLARLTLSKGGKTLPEAKAQTRYSEQESGNLLLLSGLSLNNHDQATTLTFLDGEQIIIPWHGHRLTPAEWRGRAARVTQHLVSCRLSQLPRPAERLWCQKVGLGHVLYLGHPDQDDAAISIALVATDHQLHAVDGCSAPLSDRLSYRYRDDIGLIITQYKE
>NZ_CP006664.1|WP_034165912.1|2666169_2667174_+|WYL-domain-containing-protein
MEQLNRAIALHQLLLDFRYPVPRSVILERLECSASTFKRLLELLRDRYQAPILWDPVARGYRYDTDDGRFTLPGVWFTASEAFALLMANRLLQDVQPGLHQQGLAQLQERIGTLLGPQWKGQADRLRVESIGRQYVAPELFLPLVQALFARHRLQLHYRATSHQADIRCVSPQRLCWYRDNWYLLAWCHEREALRIFALSRITEPLELDETAYDSETQELDALFSSGYGIFVGSTLQQAELRFDPSVAPWVRDVQWHRDQIQTLEQSGHIRLSFPYADQRELVRDLMRFSGEIDVLAPPELRQCVIAAMVAGLKKHGAGTSVVQPLSQWGEDNG
>NZ_CP006664.1|WP_144242811.1|2665502_2665919_-|EAST1-family-heat-stable-enterotoxin
MSKRRDAQREPMLSCAAVAWQHRPRASADPIVYFDNISLNVRQYSRILDKSVFLTLGINIKGQKALSGMWIAENEGAEFWLSVLTEQKHHGLNDAFIAGIGGLIQRIRRSISHYVSCIGCTTACVLPPGKSTRPSPVT
>NZ_CP006664.1|WP_071881910.1|2680288_2680873_+|winged-helix-turn-helix-domain-containing-protein
MSALIIRGETLYINEEEQALSASEVALLYLLYSNPNVIFGSDDIIKKCWPDRIVSAGSVPVSIKHIRDTLKKITEKQVIITHKGKGYSFDNIAGYISIDMCDINQGAISLASDSKFSVTKIKTLFVIAVGAIFIVGLLDWLSNTFIIVDNDLDVSSGHLEMSKYKKSSNGEVIFHDANGKVIRCNNATCLESSH
>NZ_CP006664.1|WP_144242812.1|2680820_2681345_+|hypothetical-protein
MAKSFGVTMRHAWKVVINFKVVLIVLLISIILLGKGTFNGYFNDTYNESRGVVEHIDLSISNYRFKLAHFVSDENKNLLLAEEEEGVAIKLFNGKYHLLPLHYQKTFSAIKYIASFDELGSIRACLYDFDKKSRRRVLFLDNDRGGIVLNGKSVYPSSLFLEGEGHDNSFFHSK
>NZ_CP006664.1|WP_144242813.1|2681657_2682257_+|hypothetical-protein
MNCKVKCVSQGEVLIYFIGVCQYELFGAELLMDKLVEKINGAGLKCCQSIVLLPSAMKLKYLGETIKLIKDNGILHQVDILLFVASSGWGIKVLNKMLSFHSTYEPFSLDSYKIKMSKNLKLVERKSIKAAHNSFESHLLSSILNGGDSRALPKTRPESKAFSQRKVSLIKQYGFRHFNHFCIFLQGSESLIRDLFLSY
>NZ_CP006664.1|WP_072006773.1|2682304_2682634_+|LysM-peptidoglycan-binding-domain-containing-protein
MLRHLNFFSFGFSIVVRILFLVAFVLILTTKMVAAQLHPLQQFEPYIHVYTLKVGDSATSVAEKFNITLKQLYQLNKFRNFENGFSHLQVGDELEVPILILHQEDKFLS
>NZ_CP006664.1|WP_144242815.1|2682671_2682854_+|hypothetical-protein
MKAMMIVLMIINITACKSIRKEQQEVIVMRKESSSFIYNNINKELVAWIKHFAKIDSDKL
>NZ_CP006664.1|WP_071844203.1|2682893_2684135_+|DUF3440-domain-containing-protein
MVSKTRLMTEKILTGDNVLHAAMERIDWIFRTFTSVCLSFSGGKDSTILFHLVANVARKKKRRFSVLFIDWEAQYECTILHVRKMRDVYQDVTENFYWIALPLKTVNGVSQFQPEWVCWEPKVEWVRQPPDHAIVDSAYFPFYRHAMTFEEFVVDFSSWLASTNKCAVAILTGVRADESLNRFMGLVSHRKQRYADDKPWSTASPKGDYYTMYPLYDWKVRDIWIYNSRTNAIVNPVYNLMYRAGVSLHNMRVCEPFGPEQRKGLWLYHVLEPESWARMCSRVSGCVSGALYANETGAYFALRKQISKPSHHTWRSYAMFLLDVMPRKTAEHYRNKIAVYLRWYQTHGYPEDIPDEQMNDLGAKDIPSWRRICKTLIKNDFWCRTLSFSPNKSRYYQSYLSRMKLRRKEWGIL
>NZ_CP006664.1|WP_034165837.1|2684119_2684761_+|ParB-N-terminal-domain-containing-protein
MGDFMTLEELSNMIHRYFRLNETEDEKIQALNYLRKLLHELSPFVLEPVDCILWVRADQVVTNDYNPNVMAPAEKKLLKQSLEKDGFTQPVVVSEEKNHYLVVDGFHRQLLGKNKGGVGDRLRGWLPVTCIRAERKGQAARIAATIRHNRARGKHQITLMSDVVTELSQLGWTNENIAQELGMDQDEVLRLKQISGLTELFQEEEFSPAWTVR
>NZ_CP006664.1|WP_144242816.1|2685523_2685886_+|hypothetical-protein
MKNYITQALTVVYIMVLIAVTIYASLIDADIELFRKDVSGEIKRNHAGGFSVSSKNEWELCNMSYLFCVGVLAREPFIDAVPAYDLYINGMYYANTKFTASEIKGICRATNNNVSYYFKD
>NZ_CP006664.1|WP_144242817.1|2685917_2686343_+|hypothetical-protein
MNIKYKKRFVFIFAVVAALVFFVSPPFLTIRDVHTLWNNVFDGGRDSNHNHEKYNVLNPLVLKQYDGNVFTYINHIDHMQCIVLVSSFMFYVKNRVGTYAETCINNYCRSNSLKLNNALILLESCSEYDNNIVIKYYRNKY
>NZ_CP006664.1|WP_158407646.1|2687337_2687541_-|transposase
MDIFCAHHTYGRQLNQHPHIHVSVTRAGLDIKHHVWRLLFFKKKEVETIWRNAVVHLLRDNYARIPQ

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Crispr_ID: NZ_CP006664_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006664_2

2769659-2769816

Orphan

Consensus_repeat	Method
AAAGATGGCATGAAGAAAGATGGTATGAAGAAAGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP006664_2

>merge|NZ_CP006664|2|2769659-2769816|CRISPRCasFinder
AAAGATAATATGGGTCATGATGGCATGAAGCAAGAGAGCGCGATGTCCCATGATAATATGGGTAAAGATGGCATGAAGAAAGATGGTATGAAGAAAGATGGCATGAAGAAAGATGGCATGAAGAAAGATGGCATGAAGAAAGATGGTATGAAAAAAGA

>NZ_CP006664|2|2|2769659-2769816|CRISPRCasFinder
AAAGATAATATGGGTCATGATGGCATGAAGCAAGA	GAGCGCGATGTCCCATGATAATATGGGT
AAAGATGGCATGAAGAAAGATGGTATGAAGAAAGA	TGGCATGAAGAAAGATGGCATGAAG
AAAGATGGCATGAAGAAAGATGGTATGAAAAAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006664.1\|WP_034171815.1\|2776032_2776257_-\|EscE/YscE/SsaE-family-type-III-secretion-system-needle-protein-co-chaperone	unknown	unknown	gnl\|CDD\|378110
NZ_CP006664.1\|WP_034171819.1\|2774496_2774748_-\|type-III-secretion-system-inner-rod-subunit-SctI	unknown	unknown	gnl\|CDD\|131549
NZ_CP006664.1\|WP_034171817.1\|2775015_2775237_-\|type-III-secretion-system-needle-filament-subunit-SctF	unknown	unknown	gnl\|CDD\|378177
NZ_CP006664.1\|WP_034171828.1\|2766632_2767442_+\|phosphonoacetaldehyde-hydrolase	unknown	unknown	gnl\|CDD\|184075
NZ_CP006664.1\|WP_034171822.1\|2772555_2773221_-\|type-III-secretion-protein	unknown	unknown	gnl\|CDD\|274165
NZ_CP006664.1\|WP_034171825.1\|2768744_2769533_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239026
NZ_CP006664.1\|WP_034171823.1\|2771534_2772563_-\|type-III-secretion-protein	unknown	unknown	gnl\|CDD\|237949
NZ_CP006664.1\|WP_034171826.1\|2768135_2768735_+\|cytochrome-b/b6-domain-containing-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP006664.1\|WP_045426336.1\|2770009_2771359_-\|guanine-deaminase	unknown	unknown	gnl\|CDD\|236419
NZ_CP006664.1\|WP_034171816.1\|2775255_2775948_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP006664.1\|WP_034171820.1\|2773768_2774500_-\|type-III-secretion-inner-membrane-ring-lipoprotein-SctJ	unknown	unknown	gnl\|CDD\|274190
NZ_CP006664.1\|WP_034171829.1\|2765520_2766624_+\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|131379
NZ_CP006664.1\|WP_034171833.1\|2761513_2762383_-\|2-aminoethylphosphonate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|237888
NZ_CP006664.1\|WP_034171821.1\|2773217_2773772_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372567
NZ_CP006664.1\|WP_034171827.1\|2767510_2767690_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_034171818.1\|2774744_2775011_-\|EscG/YscG/SsaH-family-type-III-secretion-system-needle-protein-co-chaperone	unknown	unknown	gnl\|CDD\|377644
NZ_CP006664.1\|WP_034171831.1\|2763500_2764514_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|237887
NZ_CP006664.1\|WP_034171830.1\|2764657_2765380_-\|phosphonate-utilization-transcriptional-regulator-PhnR	unknown	unknown	gnl\|CDD\|132380
NZ_CP006664.1\|WP_034171834.1\|2760722_2761520_-\|2-aminoethylphosphonate-ABC-transport-system,-membrane-component-PhnV	unknown	unknown	gnl\|CDD\|132299
NZ_CP006664.1\|WP_034171832.1\|2762385_2763495_-\|2-aminoethylphosphonate-ABC-transport-system-ATP-binding-subunit-PhnT	unknown	unknown	gnl\|CDD\|132302

Protein	Function_ID	Function_description	E-value
NZ_CP006664.1\|WP_034171815.1\|2776032_2776257_-\|EscE/YscE/SsaE-family-type-III-secretion-system-needle-protein-co-chaperone	gnl\|CDD\|378110	pfam08988, T3SS_needle_E, Type III secretion system, cytoplasmic E component of needle. T3SS_needle_E is a family of proteins from the operon that builds and controls the needle of the injection system of type III secretion. The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The family is cytoplasmic and may help to stabilize and prevent early polymerization of the needle-protein F.	2.81724e-13
NZ_CP006664.1\|WP_034171819.1\|2774496_2774748_-\|type-III-secretion-system-inner-rod-subunit-SctI	gnl\|CDD\|131549	TIGR02497, hypothetical_protein_CV_2587, type III secretion apparatus protein, YscI/HrpB, C-terminal domain. This model represents the conserved C-terminal domain of a protein conserved in across species in the bacterial type III secretion apparatus. This protein is designated YscI (Yop proteins translocation protein I) in Yersinia and HrpB (hypersensitivity response and pathogenicity protein B) in plant pathogens such as Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.04294e-05
NZ_CP006664.1\|WP_034171817.1\|2775015_2775237_-\|type-III-secretion-system-needle-filament-subunit-SctF	gnl\|CDD\|378177	pfam09392, T3SS_needle_F, Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF. Type III secretion systems are essential virulence determinants for many gram-negative bacterial pathogens. MxiH is an extracellular alpha helical needle that is required for translocation of effector proteins into host cells. Once inside, the effector proteins subvert normal cell function to aid infection. The needle protein F, polymerizes to form a shaft.	2.80538e-16
NZ_CP006664.1\|WP_034171828.1\|2766632_2767442_+\|phosphonoacetaldehyde-hydrolase	gnl\|CDD\|184075	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional.	1.38775e-159
NZ_CP006664.1\|WP_034171822.1\|2772555_2773221_-\|type-III-secretion-protein	gnl\|CDD\|274165	TIGR02499, translocation_protein, type III secretion apparatus protein, HrpE/YscL family. This model is related to pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108) [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	6.19145e-06
NZ_CP006664.1\|WP_034171825.1\|2768744_2769533_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239026	cd02108, bact_SO_family_Moco, bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.	2.55567e-89
NZ_CP006664.1\|WP_034171823.1\|2771534_2772563_-\|type-III-secretion-protein	gnl\|CDD\|237949	PRK15345, PRK15345, SepL/TyeA/HrpJ family type III secretion system protein.	8.0267e-36
NZ_CP006664.1\|WP_034171826.1\|2768135_2768735_+\|cytochrome-b/b6-domain-containing-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	3.35861e-52
NZ_CP006664.1\|WP_045426336.1\|2770009_2771359_-\|guanine-deaminase	gnl\|CDD\|236419	PRK09228, PRK09228, guanine deaminase; Provisional.	0
NZ_CP006664.1\|WP_034171816.1\|2775255_2775948_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.50804e-26
NZ_CP006664.1\|WP_034171820.1\|2773768_2774500_-\|type-III-secretion-inner-membrane-ring-lipoprotein-SctJ	gnl\|CDD\|274190	TIGR02544, YOP_proteins_translocation_lipoprotein, type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.80233e-70
NZ_CP006664.1\|WP_034171829.1\|2765520_2766624_+\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|131379	TIGR02326, 2-aminoethylphosphonate--pyruvate_aminotransferase, 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. [Central intermediary metabolism, Phosphorus compounds].	0
NZ_CP006664.1\|WP_034171833.1\|2761513_2762383_-\|2-aminoethylphosphonate-ABC-transporter-permease-subunit	gnl\|CDD\|237888	PRK15050, PRK15050, 2-aminoethylphosphonate transport system permease PhnU; Provisional.	4.46069e-126
NZ_CP006664.1\|WP_034171821.1\|2773217_2773772_-\|hypothetical-protein	gnl\|CDD\|372567	pfam13327, T3SS_LEE_assoc, Type III secretion system subunit. This is a family of bacterial putative type III secretion apparatus proteins associated with the locus of enterocyte effacement (LEE).	2.3233e-45
NZ_CP006664.1\|WP_034171818.1\|2774744_2775011_-\|EscG/YscG/SsaH-family-type-III-secretion-system-needle-protein-co-chaperone	gnl\|CDD\|377644	pfam06287, DUF1039, Protein of unknown function (DUF1039). This family consists of several hypothetical bacterial proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unknown.	2.66463e-26
NZ_CP006664.1\|WP_034171831.1\|2763500_2764514_-\|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|237887	PRK15046, PRK15046, 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional.	3.727e-180
NZ_CP006664.1\|WP_034171830.1\|2764657_2765380_-\|phosphonate-utilization-transcriptional-regulator-PhnR	gnl\|CDD\|132380	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. [Regulatory functions, DNA interactions].	1.69953e-129
NZ_CP006664.1\|WP_034171834.1\|2760722_2761520_-\|2-aminoethylphosphonate-ABC-transport-system,-membrane-component-PhnV	gnl\|CDD\|132299	TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.	2.90173e-109
NZ_CP006664.1\|WP_034171832.1\|2762385_2763495_-\|2-aminoethylphosphonate-ABC-transport-system-ATP-binding-subunit-PhnT	gnl\|CDD\|132302	TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.	0

>NZ_CP006664.1|WP_034171825.1|2768744_2769533_+|molybdopterin-dependent-oxidoreductase
MKKSNIDLSVGDGDALVKEAQRLVARRLDGSSRRRFLQQGLTLGGIALLTGCDLSENPDVESVLNRMSRFNDRVQGWLFSGQRLAPEYTPSEITRPFPFNAFYGEEEIPDIAGDDYRLEVRGLVRDTRSWRLAELYQLTQHEQITRHICVEGWSAIGRWGGVRFADFLQLIGAQTQAKYVGFRCADDYYTSIDMASALHPQTIMALSWDGQRLPPEYGYPMKLRIPTKLGYKNPKHIVSIEITNRFPGGYWEDQGYNWFGGS
>NZ_CP006664.1|WP_034171826.1|2768135_2768735_+|cytochrome-b/b6-domain-containing-protein
MSGAKVVNVHPLWLRLCHWINAIAIFLMILSGWRIYDASPLFDFYFPKQYTLGGWLGGALQWHFAAMWLFALNGVVYLTINVIGGRFRRRFWPISLRQLGQDMADALRGRLAHDDPRHYNAVQKCAYLSAIGAAIVLLLSGLVLWKSVQFPLLRGLLGGYEAARYIHFYAMAFVCAFLVVHVVMVALVPKTLLAMLRGR
>NZ_CP006664.1|WP_034171827.1|2767510_2767690_-|hypothetical-protein
MKYVLLSTLLLLINGCATVPSVSMPRENNPQGGETSVSDKEASSANDGRSLTVEPQRHG
>NZ_CP006664.1|WP_034171828.1|2766632_2767442_+|phosphonoacetaldehyde-hydrolase
MKRINAVILDWAGTTVDFGSFAPTQIFVEAFRQAFGVEITLDEARVPMGLGKWQHIDALGKLPAVAARWQAKWGRAMTADDIDAIYAAFMPLQIASVVNFAAPIDGVVDTVAQLRAEGIRIGSCSGYPRAVMEKLVPAAAAYGYSPDNWVATDDLAAGGRPGPWMALQNVIALGIDSVAHCVKVDDAAPGIVEGINAGMWSVGLAVSGNAFGATREAFLAMPAAEVAQRRERAAAKLYAAGAHYVVDTLADLPGVIAQINARLTRGERP
>NZ_CP006664.1|WP_034171829.1|2765520_2766624_+|2-aminoethylphosphonate--pyruvate-transaminase
MTSRNYLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNLGVVEQVRRQLTALATAEAGYTSVLLQGSGSYAVEAVLGSVIGQHGKVLIVSNGAYGARMAEMAERMGIAHHVYDCGEVASPDPHAVEAILKDDGAITHIAMVHCETTTGILNPIAALGALARRYGKTYIVDAMSSFGGIPLDVAALGIDFLISSANKCIQGVPGFAFVIAREEQLALCAGRSRSLSLDLYAQWVCMRDNHGKWRFTSPTHTVLAFAQALKELAEEGGIAARYRRYRDSQRQLVAGMQRLGFTPLLEAALHSPIITAFYSPTHPQYRFDDFYTRLKAQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLNAIDNAMYWHK
>NZ_CP006664.1|WP_034171830.1|2764657_2765380_-|phosphonate-utilization-transcriptional-regulator-PhnR
MKSIPGETPQYLLIKAELQACIRDGALSSGDKLPSERELCARFNTTRITIRESLAQLEASGIIWRADRRGWFVTPERLWLDPTQNTNFHRLCREQGRQPKTRLLNGIVTDVPAGARAALQLQSVDKIYLLARLRYADDRAICYCENHCLPARVPELLQYDLNGSLTEIYEKRYGLRYTSMHLSFYPTAMPPQAAQALGVMEGRPALLLRRLNYDQYGRILDLDIEYWRHDSLRIEVDTAP
>NZ_CP006664.1|WP_034171831.1|2763500_2764514_-|2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MKRSRLALLSALTLAAAPVWAGSTVTVYSIDGLHDGDNSWYQAQFKAFTQATGITVRYVEGGGGVVVERLAKERTNPQADVLVTAPPFIQRAAAENLLAGFTSDAAEQIPGANDRYSPLVQNYLSFIYNGQRLKTAPARWQDLLDSKYKNKLQYSTPGQAADGTAVMLQAFHSFGSKEAGFDYLRQLQANNIGPSASTGKLTALVNKGELYVANGDLQMNLAQMQRNPNVNIFWPADAKGERSALSIPYVIGLVQGAPESENGKKLINFLLSKEAQTSVSALSWGMPVRGDVSPQDANYMMAKAMLEGVKSWQPDWDEVARSLSADIARWHKVTDSE
>NZ_CP006664.1|WP_034171832.1|2762385_2763495_-|2-aminoethylphosphonate-ABC-transport-system-ATP-binding-subunit-PhnT
MLMKSTAIPTPAQQGASGITLDALRVAYHGNVVLKPLSLTIEPGEVLALIGPSGSGKTTVLRALAGFVQPTGGRIVIGGTDVTHLPPYKRGLAMVVQNYALFPHLRVEDNVAFGLRAQKQPKALINDRVNDALRTVGMSDYAARYPHQLSGGQQQRVAIARAIAVRPRVLLLDEPLSALDAQIRHTMVEEIARLHRELPELTILYVTHDQTEALTLADKIGIMKDGTMIAHGETRSLYHHPPNRFAAEFLGRANIIPATALSVTPTPGMVSVSCAGAIINAFSRGGQHGYHKLLCIRPQHISLAPRTANSNRLNATLQSVHWQGDLTHLLCDVAGESVRIVMTQVSPMPQPGDSLALWFEPDDAVLIEV
>NZ_CP006664.1|WP_034171833.1|2761513_2762383_-|2-aminoethylphosphonate-ABC-transporter-permease-subunit
MSLFMTLERSRPVLRPLRWLAPPLLVLATLFLYPLLLIAEQALSTPHGGMGLESLWQVVESRRFTGALINTLQIAFFATAGCLLLGSVLSLILVFIPFPGSELIGRVVDTFIALPTFLITLAFTFIYGSAGLLNGTLMQLFGFELPPVSFLYSLQGVILAEITVFTPLVMRPLMAALRQIDKSQLEAASILGARPHQIIARVIFPAALPALLAGGSLCLLLTTNEFGIVLFIGAKGVNTLPMMVYSKAILESDYGVACMIALINILLSLGLFSLYRLAVSRTHLRSQPC
>NZ_CP006664.1|WP_034171834.1|2760722_2761520_-|2-aminoethylphosphonate-ABC-transport-system,-membrane-component-PhnV
MLIWSRKGRIAAGVVATTLFTVIFFLPLLVILMSSLSQQWNGILPSGFTLMHFVNAFRGAAWDALLASLVVGFCASLFALLCGVWAALALRQYSARAQKWLSLAFYLPSAIPSVSVGLGILVAFSQGPLQMNGTLWIVLAAHFVLISAFTFSNVSTGLARLPADIEHVASSLGATPWYRMRHVTLPLLMPWMISALALSLSLSMGELGATMMIYPPGWSTLPVAIFSLTDRGNIADGAALTIVLVAITLCLMIKLERVAGRLGKK
>NZ_CP006664.1|WP_045426336.1|2770009_2771359_-|guanine-deaminase
MLLFYASTNNNETILVNQATSAIRSSFLHFFSNPAKTDNLSDSFEFIQDGLLIIKEGKVVECRPYHHSDAYNYKNIDDKTGCLITPGFIDTHIHYPQSEMIGAYGEQLLEWLEKYTFPTEKKFADPAYAQRIAHIFVNELLGNGTTTALVFGTVHPQSVDALFEEALSKNMLLISGKVMMDRNAPDYLLDTAESAYQDSERLIQKWHNKGRLKYAITPRFAPTSTPEQLRLAGKLKEKYPDTYVHTHLCENHSEIAWVAELYPEQENYFQVYRHYGLAGKKSVFAHAIHLSDAEWDGIAKTDSAIAFCPTSNLFLGSGLFNLARAQNHHIRVGLGTDIGAGTSFCQLDSLCEAYKITQLAGGALSAFMGFYLATLGGAVALSLEAQVGNFTAGKTADFTVIDWHTDEIQKLRMDNTTTLEDRLFALMIMGGKQNIKETYIAGNQQYQRA
>NZ_CP006664.1|WP_034171823.1|2771534_2772563_-|type-III-secretion-protein
MLNIHSASLAPTERQTLVPHAAPGPDNSASVIAQAMVELSESQSDALEETQEDLSFALGGRLRELRNGKEQESSSRERVLMHKLVAEVAMVAEEDLSDLNDDNAWQHAPQLLSALQAQYPAPGAAALHLAAWLAHRQPGARLRSRMEAALASLMADDQTAIALFATLEFGTVTPGLRQELLQLYHRALAPRRQISQWLNLLGERQQRRKKIRAMLHLLAYALSASGQPIVGSHLAAVIDDLRQLLRLLGLEDYCDRAAAALGMPAISGEGLMLLVVQLIEQIWLNADTLAEMLPPQAELDRYRLLQSLGKLIQLLPDACFNDADHRLQLDEAIHSLSDSIVS
>NZ_CP006664.1|WP_034171822.1|2772555_2773221_-|type-III-secretion-protein
MNNPLHLPFTTLPGALPGHGYLTAQRLQEREEAQCAIAASLRQAEDHAGAIRAAADDLLAQAKTQAQQVREQALREGERLARQKQEEAIAAAVQWLCHEQDLEQHLADQLAQRWRQLTAQAIEELLGKQDQNALLIRRVNQLVIRRFAQGRLTLSVPPSAMAHAQAAWADSPRIAVTADPTLQEGQALLDDGLLRIHLDSQAQQSRLLQLLRDTCGGRQYA
>NZ_CP006664.1|WP_034171821.1|2773217_2773772_-|hypothetical-protein
MTPARQHLYQIWHQPGHIIDPAWWGALGLHCWQSIYRDSPLARPALDTLLRQRLGQSGLPPTLTPLSGDLLSSAERRATLLLAMGLWALEAGGLLLLKPYRETLSDALDPLSIGQLQVLLPYGAAPQALPPASLCQRARELGSAWLSQAPDPALRACRLYAPPSQGAAPAGSPIPILQKLARWL
>NZ_CP006664.1|WP_034171820.1|2773768_2774500_-|type-III-secretion-inner-membrane-ring-lipoprotein-SctJ
MKIIPWILLFGLLPLLSGCKSELYSKLDEKEANQMMALLIYNNIPADKRVEKEGVTLLVERERFVDAVEVLRQNGLPRRKTVTMQELFPSGQLVTSPEQEEAKLNFLKSQQIEKMLGSMDGVINAEVSVAEPRIIVGEAPPQASAAVFIKYSPEINLPAREAEIRALIHNGIPGLAPDRISVTLQRAEYRYQPPAAVATEDHKITLYGHPLPKEALVAAACTLLFGLLVSLLLWLRRPARSTP
>NZ_CP006664.1|WP_034171819.1|2774496_2774748_-|type-III-secretion-system-inner-rod-subunit-SctI
MNIDAINAIGQALTRGTAEAQDPVPLPAQQRFAALMNAPQAGDSPDSLLAIQGTLNELAVGVDLTAKVAGSVAQSINKLVNPS
>NZ_CP006664.1|WP_034171818.1|2774744_2775011_-|EscG/YscG/SsaH-family-type-III-secretion-system-needle-protein-co-chaperone
MDTLSVPRLVVEAGFAAVNCGMRAEMHDILNALPDWIDDPDQITRCEAILLFGLGRRKAASARLAMLPPDDCLPLRALLTPTTQEKTV
>NZ_CP006664.1|WP_034171817.1|2775015_2775237_-|type-III-secretion-system-needle-filament-subunit-SctF
MNIEDIVSQLGNQVSRMSNDAHTVITSGSVNNDPQAMLKAQFAMQQYSVMIGYQSSVMKTVKDMMMSIISKIG
>NZ_CP006664.1|WP_034171816.1|2775255_2775948_-|helix-turn-helix-domain-containing-protein
MPNLHLLLVTGPDNIALLPEPGVLLIADSRPPGIASTRHTRLFSYPCNLLHSICRDLQHLMYSGPDPVSPPQPLPIAMAPGLLKTLLRLADADDETMLRLVLAYSLTLECQRTSTLLRSLLTADADLFDTLYRHRLEPWPVARYADLFGLSQRKFNQLFNDKFGMAPKRWLLRQRLGHARQLLETTSKKVIDVALESGFCNAAHFSDCFRRHFSQSPSEVRRASLHHRAG
>NZ_CP006664.1|WP_034171815.1|2776032_2776257_-|EscE/YscE/SsaE-family-type-III-secretion-system-needle-protein-co-chaperone
MPTLTHLEDSLRQDPHGHQRQRLIDCLNEAARRLALALRQPHSADEYARLERQRQSCLAAVRVIDTLWTLHQST

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Crispr_ID: NZ_CP006664_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006664_3

3532277-3532370

Orphan

Consensus_repeat	Method
GTGGTGGAGTCTCTGTATGCCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006664_3

>merge|NZ_CP006664|3|3532277-3532370|CRISPRCasFinder
GTGGTGGAGTCTCTGTATGCCGCGGCACGCCGCCACGGGGGTGTCATCCCCGTAGCCGTACGGTTGCGCAGTGGTGGAGTCGCTGTATGCCGCG

>NZ_CP006664|3|3|3532277-3532370|CRISPRCasFinder
GTGGTGGAGTCTCTGTATGCCGCG	GCACGCCGCCACGGGGGTGTCATCCCCGTAGCCGTACGGTTGCGCA
GTGGTGGAGTCGCTGTATGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006664.1\|WP_045427005.1\|3540644_3541616_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|181888
NZ_CP006664.1\|WP_034165113.1\|3523606_3524035_-\|pyrimidine-(deoxy)nucleoside-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|182536
NZ_CP006664.1\|WP_012848356.1\|3529354_3530266_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
NZ_CP006664.1\|WP_015461379.1\|3530541_3530949_-\|DNA-binding-transcriptional-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858
NZ_CP006664.1\|WP_034165159.1\|3542678_3543008_-\|YciU-family-protein	unknown	unknown	gnl\|CDD\|179934
NZ_CP006664.1\|WP_012848364.1\|3535746_3536391_+\|YchE-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|236850
NZ_CP006664.1\|WP_034165116.1\|3526433_3527282_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP006664.1\|WP_034165125.1\|3541612_3542617_+\|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF	unknown	unknown	gnl\|CDD\|185037
NZ_CP006664.1\|WP_034165122.1\|3538792_3539713_+\|oligopeptide-ABC-transporter-permease-OppB	unknown	unknown	gnl\|CDD\|181886
NZ_CP006664.1\|WP_034165117.1\|3527371_3527854_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|234966
NZ_CP006664.1\|WP_034165126.1\|3543062_3544523_-\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NZ_CP006664.1\|WP_034165112.1\|3523255_3523579_+\|DUF1496-domain-containing-protein	unknown	unknown	gnl\|CDD\|369340
NZ_CP006664.1\|WP_071525666.1\|3544713_3544890_+\|YciY-family-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_034165114.1\|3524031_3524841_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|236970
NZ_CP006664.1\|WP_034165118.1\|3528074_3529142_+\|two-component-system-response-regulator-RssB	unknown	unknown	gnl\|CDD\|182652
NZ_CP006664.1\|WP_034165121.1\|3537081_3538716_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	unknown	unknown	gnl\|CDD\|185059
NZ_CP006664.1\|WP_034165120.1\|3532568_3535241_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
NZ_CP006664.1\|WP_034165119.1\|3531465_3532053_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP006664.1\|WP_034165115.1\|3524939_3525509_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|129813
NZ_CP006664.1\|WP_034165123.1\|3539724_3540633_+\|oligopeptide-ABC-transporter-permease-OppC	unknown	unknown	gnl\|CDD\|185304

Protein	Function_ID	Function_description	E-value
NZ_CP006664.1\|WP_045427005.1\|3540644_3541616_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|181888	PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional.	0
NZ_CP006664.1\|WP_034165113.1\|3523606_3524035_-\|pyrimidine-(deoxy)nucleoside-triphosphate-diphosphatase	gnl\|CDD\|182536	PRK10546, PRK10546, pyrimidine (deoxy)nucleoside triphosphate diphosphatase.	4.13239e-73
NZ_CP006664.1\|WP_012848356.1\|3529354_3530266_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
NZ_CP006664.1\|WP_015461379.1\|3530541_3530949_-\|DNA-binding-transcriptional-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	3.98308e-78
NZ_CP006664.1\|WP_034165159.1\|3542678_3543008_-\|YciU-family-protein	gnl\|CDD\|179934	PRK05094, PRK05094, dsDNA-mimic protein; Reviewed.	2.72751e-57
NZ_CP006664.1\|WP_012848364.1\|3535746_3536391_+\|YchE-family-NAAT-transporter	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	1.48542e-136
NZ_CP006664.1\|WP_034165116.1\|3526433_3527282_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	1.91032e-168
NZ_CP006664.1\|WP_034165125.1\|3541612_3542617_+\|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF	gnl\|CDD\|185037	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional.	0
NZ_CP006664.1\|WP_034165122.1\|3538792_3539713_+\|oligopeptide-ABC-transporter-permease-OppB	gnl\|CDD\|181886	PRK09471, oppB, oligopeptide ABC transporter permease OppB.	0
NZ_CP006664.1\|WP_034165117.1\|3527371_3527854_-\|YchJ-family-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	3.90443e-89
NZ_CP006664.1\|WP_034165126.1\|3543062_3544523_-\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	0
NZ_CP006664.1\|WP_034165112.1\|3523255_3523579_+\|DUF1496-domain-containing-protein	gnl\|CDD\|369340	pfam07383, DUF1496, Protein of unknown function (DUF1496). This family consists of several bacterial proteins of around 90 residues in length. Members of this family seem to be found exclusively in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.	7.69326e-16
NZ_CP006664.1\|WP_034165114.1\|3524031_3524841_-\|exodeoxyribonuclease-III	gnl\|CDD\|236970	PRK11756, PRK11756, exonuclease III; Provisional.	0
NZ_CP006664.1\|WP_034165118.1\|3528074_3529142_+\|two-component-system-response-regulator-RssB	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
NZ_CP006664.1\|WP_034165121.1\|3537081_3538716_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NZ_CP006664.1\|WP_034165120.1\|3532568_3535241_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
NZ_CP006664.1\|WP_034165119.1\|3531465_3532053_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	3.12924e-117
NZ_CP006664.1\|WP_034165115.1\|3524939_3525509_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	3.046e-60
NZ_CP006664.1\|WP_034165123.1\|3539724_3540633_+\|oligopeptide-ABC-transporter-permease-OppC	gnl\|CDD\|185304	PRK15406, PRK15406, oligopeptide ABC transporter permease OppC; Provisional.	0

>NZ_CP006664.1|WP_034165119.1|3531465_3532053_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYRERGMHTLVFTAEIDNRYAVGQVSSRIGLHSPAMLYNQQTDLLAEIRQAHRQQCVHCVLVDESQFLTKAQVLALSTVVDDLDIPVLCYGLRTDFRAELFPGSQYLLAWADKLVELKTICHCGRKANMVLRLDQDGRALKDGEQVVIGGNERYVSVCRRHYKETLGVTAP
>NZ_CP006664.1|WP_015461379.1|3530541_3530949_-|DNA-binding-transcriptional-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVKERREEDQQAQAEIEERTRKLQQYREMLIADGIDPNELLQTMNATKVAGKTKRAARPAKYQYVDENGETKTWTGQGRTPAVIKNAIEEQGKSLDDFLI
>NZ_CP006664.1|WP_012848356.1|3529354_3530266_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MSTSVRKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGINEIILVTHSSKNSIENHFDTSFELEAILEKRVKRQLLAEVQAICPKHVTIMQVRQGLAKGLGHAILCAHPLVGDEPFAVILPDVILDEYSADLSSDNLSEMLRRYESTGASQIMVEPVPMADVSNYGVVDCSGAQLAAGESIAIRAVVEKPPRDKAPSNLSIVGRYVLSPDIWPLLSKTPPGAGEEIQLTDAIAMLLKNETVEAYHLKGRSHDCGNKLGYMQAFVEYGLRHPALGKDFAAWIKGLNLSK
>NZ_CP006664.1|WP_034165118.1|3528074_3529142_+|two-component-system-response-regulator-RssB
MSQVLTDKQIMIVDDDVVFRRLLAGYLTTQGVRVTEAANGREALRLYPQCHPDLILCDLFMPEMNGIELLRHLLMRGSQTPVMVISATESVSDIARAMRLGAKDVLLKPVRDFTRFRQMLLACLYPALFDSLALEENALSHDWAALQRDPAQAVRLLRQLQPPVQQVIAGCRVNYRQLTDPDSCGLVLDIAPLSSREMAFYCLDTTRSAEYGVLAALMIRAIFNALLQSQLAAQERPLPHMSVILKRVNQLLRKAGLRGQFPMLAGYYHAVSGHVVLVSAGLHARLEAEERTVQLSGAMPLGTLGSVHMNQLSLRSRSWQCQIWGSVGQLRLMLTAPEHQALQPLRHLAPGAIAR
>NZ_CP006664.1|WP_034165117.1|3527371_3527854_-|YchJ-family-protein
MTLHHPLDAPCPCGSERGFSDCCAPYLNGERRATTPEQLMRSRYSAFVTHHADYLIATWHPDCQMAAERDAIIASFADTQWLGLRVIATLPGRDAHEGFVEFIARFHTPSTQQNGAIHERSRFLDLNHAWYYVDGARPTIGRNDPCPCASGNKYKKCCGR
>NZ_CP006664.1|WP_034165116.1|3526433_3527282_-|formyltetrahydrofolate-deformylase
MSQPVIQRKVLRTVCPDAKGLIAKITNICYKHQLNIIQNNEFVDHASGRFFMRTELEGIFNDATLLADLDDALPPGSDREIITTSRQRIVILVTKEAHCLGDLLIKSAYGGLDVEIAAVIGNHATLQALVEKFDIPFVLIGHEGLSREAHDAAVAEQIDRFEPDYVVLAKYMRVLTPDFVARYPDRIINIHHSFLPAFIGARPYHQAYQRGVKIIGATAHFVNNDLDEGPIIMQDVIHVDHSYTAEEMIRAGRDVEKNVLSRALYRVLAQRVFVCGNRTVIF
>NZ_CP006664.1|WP_034165115.1|3524939_3525509_-|TIGR00730-family-Rossman-fold-protein
MRNAICVFCGASDGVAERYVDSARHLGRTLARQGRTLIYGGGGKGLMGALANAALEAGGEVHGVIPQRLVDAETAHHGLTSLEIVPDMHTRKARMAARADGFIALPGGIGTLEELFEIWTWSQIGCHSKPVGLLDVAGYYQRLCNFLRYSADEGFIRAPYLATLLRDDSAGRLLDAFDAYRPHNLSRWD
>NZ_CP006664.1|WP_034165114.1|3524031_3524841_-|exodeoxyribonuclease-III
MKFISFNINGLRARPHQLAAIVEKHSPDVIGLQETKVHDDMFPLQDLAQLGYHLHYHGQKGHYGVALLTRMAPLAVRKGFPGDDAEAQRRIIMADIPTELGTLTVINGYFPQGESRDHPIKFPAKSKFYADLQRYLQDSLSPQNPVLIMGDMNITPRDIDIGIGEDSRRRWLRSGKCSFLPEERDWLDRLLAWGLVDTYRQANPQYDDRFSWFDYRSKGFDDNRGLRIDLLLASQPLAQRCTDTGIDYAIRAMEKPSDHAPIWAEFALS
>NZ_CP006664.1|WP_034165113.1|3523606_3524035_-|pyrimidine-(deoxy)nucleoside-triphosphate-diphosphatase
MSAPAAEKILHVVAAIIERRGAILLAQRGRGQDQAGLWEFPGGKVEAGESQPQALQRELDEELGLRCRVSDYVASSTLHLPGKRIHLHAWRVQPEEGEPEAREHAALCWVTPCQAQTYDLAPADRPLLQAYLDLLARFHADA
>NZ_CP006664.1|WP_034165112.1|3523255_3523579_+|DUF1496-domain-containing-protein
MKQAVMMALAALLWSGALQAQGSVSTDGAQQGAAAVAAGGIDVVVPMPANGYTNGVNGVSCSRCCLYQDRYYSEGAVVSTDGLLLQCQANPQVLSTNNLRWVVLKKG
>NZ_CP006664.1|WP_034165120.1|3532568_3535241_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAVTNTAELDALVARVKKAQREFANFSQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGILSEDDTFGTITIAEPTGLICGIVPTTNPTSTAIFKALISLKTRNGIIFSPHPRAKQATNKAADIVLQAAIAAGAPKDIIGWIDEPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASILMSKTFDNGVICASEQSVIVVDSVYDKVRERFATHGGYLLQGKELKAVQDIILKNGALNAAIVGQPAEKIAEMAGISVPAGTKILIGEVSVVDDSEPFAHEKLSPTLAMYRAKNFEDAVEKAEKLVAMGGIGHTSCLYTDQDNQGARVNYFGEKMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGALPIALEEVATDGAKRAFIVTDRFLFNNGYADQVTNVLKAHGIETEVFFEVEADPTLSIVRKGAEQMNSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMIAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMNMPKSLCAFGGLDAVTHALEAYVSVLANEYSDGQALQALKLLKEFLPASYAEGAKNPVARERVHNAATIAGIAFANAFLGVCHSMAHKLGSEFHIPHGLANALLISNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAQKIEKLLAWLESIKAELGIPASIREAGVQEADFLAKVDKLSEDAFDDQCTGANPRYPLIAELKQILLDTYYGREFVEHAQEESKAVAAPKAEKKAKKA
>NZ_CP006664.1|WP_012848364.1|3535746_3536391_+|YchE-family-NAAT-transporter
MTQSLLDLSGYIKFFIGLFALVNPVGILPVFISMTSYQAAAARNRTNLTANLSVAIILITALLLGDSILNVFGISIDSFRIAGGILVMTIAMSMISGKLGEDKQNKQEKSETAIRENVGVVPLALPLMAGPGAISSTIVWSSRYHGWQNLLGFSLAIILFAFCCWLLFRAAPLLVRLLGQTGINVVTRIMGLLLMALGIEFIVTGVKAIFPGLL
>NZ_CP006664.1|WP_034165121.1|3537081_3538716_+|oligopeptide-ABC-transporter-substrate-binding-protein-OppA
MSKHIIKKSILTLGICSALGAAAVAQAAEVPAGVQLAAKQELVRNNGSEVSSLDPHKIEGVPENNVTNDLLEGLTQHDSQGHTIPGVAQRWESKDNKVWIFYLRPDAKWSNGDPVTAEDFVYSWQRMADPKTASPYASYLQYAHVANIDDIIAGKQDKSALGVKALDDRTFQVTLSEPVPYLPEMTAHYAMKPVNKAAVETFGDKWTLPQNYVSNGAYKLKDWIVNERIVLERNPQYWDNAKTIIDKVTFLPIASEVTDVNRYRAGEIDMTYNNMPIELFQKLKKEIPEQVKVDPYLCTYYYEINNQKPPFNDPRVREALKLGLDRDIIVNKVKNQGDLPAYSFTPPYTDGADLTQPAWFGWSQEKRNQEAKKLLAEAGYGPGKPLTFNLLYNTSDLHKKLAIAAASIWKKNLGIDVKLENQEWKTFLDSRHQGNYDVARAGWCADYNEPSSFLNMMLSTSSNNTPHYKSLAFDRIMASALQAPDKAGRAAVYQQAEQQLDRDSAIVPVYYYVNARLVKPFVGGYTGKDPLDYVYDKNLYIVQH
>NZ_CP006664.1|WP_034165122.1|3538792_3539713_+|oligopeptide-ABC-transporter-permease-OppB
MLKFIFRRFLEAIPTLFILVTISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIWKQYGHYLLQLSQGDFGPSFKYKDYSVNDLVAASFPVSAKLGFAAFVMAVVLGVSAGVIAALKQNSRWDYVVMSFAMTGVVIPSFVVAPLLVLIFAISLHWLPGGGWNGGALKFILLPMVALSLSYIAGIARITRGSMIEVLHSNFIRTARAKGLPLHRIVLRHALRPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTIAFNAIVDVLYAVIDPKIRY
>NZ_CP006664.1|WP_034165123.1|3539724_3540633_+|oligopeptide-ABC-transporter-permease-OppC
MLVNKNSAAAVSSFSEQLDVEGRSLWQDARRRFMHNRAALVSLCILLLIALFVIFAPMLSPFAYDDTDWEMMSAVPALEGGHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVVVGTLYGALSGYLGGKVDSVMMRMLEILNSFPFMFFVILLVTFFGQNILLIFIAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVTTGRIILRHVVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLIFPASFLVITLFCFNFIGDGLRDALDPKDR
>NZ_CP006664.1|WP_045427005.1|3540644_3541616_+|ABC-transporter-ATP-binding-protein
MKSSLLNVRSLRVTFTTPDGDVTAVNDLNFSLDAGETLGIVGESGSGKSQTAFALMGLLAPNGRIDGSASFDGREILNLPEKALNRLRAEEIAMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAQAFDESVRMLDAVKMPEARKRMRMFPHEFSGGMRQRVMIAMALLCRPRLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGQARDVFYHPSHPYSIGLLSAVPRLDAESGALLTIPGNPPNLLRLPAGCPFQPRCPYADAGCDAAPPLTAFGEGRLRACFRTVEELA
>NZ_CP006664.1|WP_034165125.1|3541612_3542617_+|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF
MSGPMSDKNVLLEVADLRVHFDIRDNKAWFWQPPKRLKAVDGVTLRLYQGETLGVVGESGCGKSTFARALIGLVKATSGSVSWLGRDLLGMNEKQWREVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYYPQMARGEMRDRVKAMMMKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQSLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPQHPYTKALMSAVPVPDPDRERNKQIQLLEGELPSPIDPPSGCVFRTRCPQAGPECAQTRPLLEGSFRHAVSCLKVDPL
>NZ_CP006664.1|WP_034165159.1|3542678_3543008_-|YciU-family-protein
MDLNNRLSEEETLDQAYDIFLELAADNLDPADVLLFNLQFEQRGAAELFDPAEDWQEHVDVDLTPDFFAEVVIGLTDGNPDSDDIEDVFARILICREKDHKMCHILWKE
>NZ_CP006664.1|WP_034165126.1|3543062_3544523_-|cardiolipin-synthase
MSTFYTVISWLAIFGYWLLIASVTLRILMKRRAVPSAMAWLLIIYILPLVGIIAYLSFGELHLGKRRAERARAMWPSTARWLADLRSCRSIFATHNSEVAAPLFQLCERRQGIAGVKGNQLQLLTSTDDTLNALIRDIELAHNSIEMMFYIWQPGGLADRVAEAMMAAARRGVHCRLMLDSAGSVAFFRSPYPAIMREAGIEVVEALQVNLLRVFLRRMDLRQHRKVVLIDNFIAYTGSMNLVDPRYFKQDAGVGQWIDVMARMEGPVATTMGIYYAFDWEMETGKRILPPEPVCNILPFEKESGHTIQVIASGPGFPEELIHQSLLTAVYSARQQLVMTTPYFVPSDDLLHAICTAAQRGVDVSIIVPKKNDSMMVGWASRAFFTEMLAAGVKIYQFEGGLLHTKSVLVDGQLSLVGTVNLDMRSLWLNFEITLVIDDDGFGSDLACVQEDYIARSSLLDPLAWLKRPLWQRVVERLFYFFSPLL
>NZ_CP006664.1|WP_071525666.1|3544713_3544890_+|YciY-family-protein
MRHSRNEVGRWRMLRQIHRRRSRWLEGQSRRNRHIYCIRRLHRIQHHRSLLYSVAYEW

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Crispr_ID: NZ_CP006664_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006664_4

3649660-3650544

Orphan

I-B,III-A,III-B

Consensus_repeat	Method
GAAACACCCCCACAGGCGTGGGGAAAAC	CRISPRCasFinder
GAAACACCCCCACAGGCGTGGGGAAAAC	CRT
GTTTTCCCCACGCCTGTGGGGGTGTTTC	PILER-CR

14 spacers

The CRISPR arrays of NZ_CP006664_4

>merge|NZ_CP006664|4|3649660-3650544|CRISPRCasFinder,CRT,PILER-CR
TAAACACCCCCACAGGCGTGGGGAAGACTTTCATAGCGTACTCTCCCAACCTTCCGGGCTAGAAACACCCCCACAGGCGTGGGGAAAACAGCGTTCCAGCAGCGCTACGGCCCAGAATAAAGGAAACACCCCCACAGGCGTGGGGAAAACTCCTCAAGCTGGACCTGTCCGGGCTGGCTGGTAGGAAACACCCCCACAGGCGTGGGGAAAACTCGATGCTGCACAGTGCTCTATCTACGCAGTCAGAAACACCCCCACAGGCGTGGGGAAAACTTACCGAAAAATACAACGTCGAATACATCGGCAGAAACACCCCCACAGGCGTGGGGAAAACGAGCCATACACCGGGAACACGTTTTCATAGCCAGAAACACCCCCACAGGCGTGGGGAAAACATGGGAAAGAGTTGGCGGCATCAGGGACAATCGGAAACACCCCCACAGGCGTGGGGAAAACCGGGAAGCATCTGGCGGTGCCACCGATAAGACAGAAACACCCCCACAGGCGTGGGGAAAACTCTACGTTGCCCGCTGCCAGGGCTAAGGCCGAAGAAACACCCCCACAGGCGTGGGGAAAACCTGGTCAAGAGAATGCGGCGGCCATTGAAGGCAGAAACACCCCCACAGGCGTGGGGAAAACCCGCTTCAGTCTTTGTCATGTACCGATGCAGGGGAAACACCCCCACAGGCGTGGGGAAAACCCCGATACGGTGGAAACCCTCGACTTTGAAACGGAAACACCCCCACAGGCGTGGGGAAAACTAGGTGCTCTGTGATCATTAATGGACTTACGGGGGAAACACCCCCACAGGCGTGGGGAAAACTCACAGACCCAGCGTTCTACCGCTTCATAGTCCAGAAACACCCCCACAGGCGTGGGGAAAAC

>NZ_CP006664|4|4|3649660-3650544|CRISPRCasFinder
TAAACACCCCCACAGGCGTGGGGAAGAC	TTTCATAGCGTACTCTCCCAACCTTCCGGGCTA
GAAACACCCCCACAGGCGTGGGGAAAAC	AGCGTTCCAGCAGCGCTACGGCCCAGAATAAAG
GAAACACCCCCACAGGCGTGGGGAAAAC	TCCTCAAGCTGGACCTGTCCGGGCTGGCTGGTAG
GAAACACCCCCACAGGCGTGGGGAAAAC	TCGATGCTGCACAGTGCTCTATCTACGCAGTCA
GAAACACCCCCACAGGCGTGGGGAAAAC	TTACCGAAAAATACAACGTCGAATACATCGGCA
GAAACACCCCCACAGGCGTGGGGAAAAC	GAGCCATACACCGGGAACACGTTTTCATAGCCA
GAAACACCCCCACAGGCGTGGGGAAAAC	ATGGGAAAGAGTTGGCGGCATCAGGGACAATCG
GAAACACCCCCACAGGCGTGGGGAAAAC	CGGGAAGCATCTGGCGGTGCCACCGATAAGACA
GAAACACCCCCACAGGCGTGGGGAAAAC	TCTACGTTGCCCGCTGCCAGGGCTAAGGCCGAA
GAAACACCCCCACAGGCGTGGGGAAAAC	CTGGTCAAGAGAATGCGGCGGCCATTGAAGGCA
GAAACACCCCCACAGGCGTGGGGAAAAC	CCGCTTCAGTCTTTGTCATGTACCGATGCAGGG
GAAACACCCCCACAGGCGTGGGGAAAAC	CCCGATACGGTGGAAACCCTCGACTTTGAAACG
GAAACACCCCCACAGGCGTGGGGAAAAC	TAGGTGCTCTGTGATCATTAATGGACTTACGGGG
GAAACACCCCCACAGGCGTGGGGAAAAC	TCACAGACCCAGCGTTCTACCGCTTCATAGTCCA
GAAACACCCCCACAGGCGTGGGGAAAAC

>NZ_CP006664|4|2|3649660-3650544|CRT
TAAACACCCCCACAGGCGTGGGGAAGAC	TTTCATAGCGTACTCTCCCAACCTTCCGGGCTA
GAAACACCCCCACAGGCGTGGGGAAAAC	AGCGTTCCAGCAGCGCTACGGCCCAGAATAAAG
GAAACACCCCCACAGGCGTGGGGAAAAC	TCCTCAAGCTGGACCTGTCCGGGCTGGCTGGTAG
GAAACACCCCCACAGGCGTGGGGAAAAC	TCGATGCTGCACAGTGCTCTATCTACGCAGTCA
GAAACACCCCCACAGGCGTGGGGAAAAC	TTACCGAAAAATACAACGTCGAATACATCGGCA
GAAACACCCCCACAGGCGTGGGGAAAAC	GAGCCATACACCGGGAACACGTTTTCATAGCCA
GAAACACCCCCACAGGCGTGGGGAAAAC	ATGGGAAAGAGTTGGCGGCATCAGGGACAATCG
GAAACACCCCCACAGGCGTGGGGAAAAC	CGGGAAGCATCTGGCGGTGCCACCGATAAGACA
GAAACACCCCCACAGGCGTGGGGAAAAC	TCTACGTTGCCCGCTGCCAGGGCTAAGGCCGAA
GAAACACCCCCACAGGCGTGGGGAAAAC	CTGGTCAAGAGAATGCGGCGGCCATTGAAGGCA
GAAACACCCCCACAGGCGTGGGGAAAAC	CCGCTTCAGTCTTTGTCATGTACCGATGCAGGG
GAAACACCCCCACAGGCGTGGGGAAAAC	CCCGATACGGTGGAAACCCTCGACTTTGAAACG
GAAACACCCCCACAGGCGTGGGGAAAAC	TAGGTGCTCTGTGATCATTAATGGACTTACGGGG
GAAACACCCCCACAGGCGTGGGGAAAAC	TCACAGACCCAGCGTTCTACCGCTTCATAGTCCA
GAAACACCCCCACAGGCGTGGGGAAAAC

>NZ_CP006664|4|2|3649721-3650544|PILER-CR
GAAACACCCCCACAGGCGTGGGGAAAAC	AGCGTTCCAGCAGCGCTACGGCCCAGAATAAAG
GAAACACCCCCACAGGCGTGGGGAAAAC	TCCTCAAGCTGGACCTGTCCGGGCTGGCTGGTAG
GAAACACCCCCACAGGCGTGGGGAAAAC	TCGATGCTGCACAGTGCTCTATCTACGCAGTCA
GAAACACCCCCACAGGCGTGGGGAAAAC	TTACCGAAAAATACAACGTCGAATACATCGGCA
GAAACACCCCCACAGGCGTGGGGAAAAC	GAGCCATACACCGGGAACACGTTTTCATAGCCA
GAAACACCCCCACAGGCGTGGGGAAAAC	ATGGGAAAGAGTTGGCGGCATCAGGGACAATCG
GAAACACCCCCACAGGCGTGGGGAAAAC	CGGGAAGCATCTGGCGGTGCCACCGATAAGACA
GAAACACCCCCACAGGCGTGGGGAAAAC	TCTACGTTGCCCGCTGCCAGGGCTAAGGCCGAA
GAAACACCCCCACAGGCGTGGGGAAAAC	CTGGTCAAGAGAATGCGGCGGCCATTGAAGGCA
GAAACACCCCCACAGGCGTGGGGAAAAC	CCGCTTCAGTCTTTGTCATGTACCGATGCAGGG
GAAACACCCCCACAGGCGTGGGGAAAAC	CCCGATACGGTGGAAACCCTCGACTTTGAAACG
GAAACACCCCCACAGGCGTGGGGAAAAC	TAGGTGCTCTGTGATCATTAATGGACTTACGGGG
GAAACACCCCCACAGGCGTGGGGAAAAC	TCACAGACCCAGCGTTCTACCGCTTCATAGTCCA
GAAACACCCCCACAGGCGTGGGGAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006664.1\|WP_034165084.1\|3646746_3647094_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_144242831.1\|3653491_3653890_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_034165091.1\|3654211_3654541_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|374105
NZ_CP006664.1\|WP_034165080.1\|3641217_3641520_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_034165085.1\|3647203_3647848_+\|DUF1367-family-protein	unknown	unknown	gnl\|CDD\|369209
NZ_CP006664.1\|WP_034165078.1\|3637509_3638580_-\|recombinase-RecT	unknown	unknown	gnl\|CDD\|367688
NZ_CP006664.1\|WP_034165092.1\|3654626_3654965_+\|phage-holin,-lambda-family	unknown	unknown	gnl\|CDD\|368287
NZ_CP006664.1\|WP_034165089.1\|3652439_3653258_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274243
NZ_CP006664.1\|WP_034165087.1\|3650937_3651714_+\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NZ_CP006664.1\|WP_034165824.1\|3656686_3657229_+\|DUF2514-family-protein	unknown	unknown	gnl\|CDD\|287666
NZ_CP006664.1\|WP_034165090.1\|3654006_3654237_+\|ParD-like-family-protein	unknown	unknown	gnl\|CDD\|314732
NZ_CP006664.1\|WP_034172547.1\|3655699_3656482_+\|antA/AntB-antirepressor-family-protein	unknown	unknown	gnl\|CDD\|369825
NZ_CP006664.1\|WP_071881930.1\|3648428_3649394_+\|Abi-family-protein	unknown	unknown	gnl\|CDD\|227160
NZ_CP006664.1\|WP_034165077.1\|3637188_3637491_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_034165081.1\|3642171_3644958_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_034165088.1\|3651835_3652351_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_034165086.1\|3647850_3648171_+\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NZ_CP006664.1\|WP_034165079.1\|3638589_3641112_-\|DNA-breaking-rejoining-protein	unknown	unknown	gnl\|CDD\|236615
NZ_CP006664.1\|WP_081926439.1\|3654967_3655519_+\|glycoside-hydrolase-family-108-protein	unknown	unknown	gnl\|CDD\|226439
NZ_CP006664.1\|WP_034165082.1\|3645076_3645373_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP006664.1\|WP_034165091.1\|3654211_3654541_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|374105	pfam15781, ParE-like_toxin, ParE-like toxin of type II bacterial toxin-antitoxin system.	2.06387e-43
NZ_CP006664.1\|WP_034165085.1\|3647203_3647848_+\|DUF1367-family-protein	gnl\|CDD\|369209	pfam07105, DUF1367, Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical phage proteins of around 200 residues in length. The function of this family is unknown. Some proteins are annotated as IrsA (intracellular response to stress).	3.63066e-53
NZ_CP006664.1\|WP_034165078.1\|3637509_3638580_-\|recombinase-RecT	gnl\|CDD\|367688	pfam03837, RecT, RecT family. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to RecT.	7.12934e-39
NZ_CP006664.1\|WP_034165089.1\|3652439_3653258_+\|hypothetical-protein	gnl\|CDD\|274243	TIGR02642, hypothetical_protein_YPTB1803, uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q. [Mobile and extrachromosomal element functions, Prophage functions].	1.82534e-17
NZ_CP006664.1\|WP_034165087.1\|3650937_3651714_+\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	1.19318e-36
NZ_CP006664.1\|WP_034165824.1\|3656686_3657229_+\|DUF2514-family-protein	gnl\|CDD\|287666	pfam10721, DUF2514, Protein of unknown function (DUF2514). This family is conserved in bacteria and some viruses. The function is not known.	3.43943e-18
NZ_CP006664.1\|WP_034172547.1\|3655699_3656482_+\|antA/AntB-antirepressor-family-protein	gnl\|CDD\|369825	pfam08346, AntA, AntA/AntB antirepressor. In E. coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the bacteriophage 933W.	8.86575e-23
NZ_CP006664.1\|WP_071881930.1\|3648428_3649394_+\|Abi-family-protein	gnl\|CDD\|227160	COG4823, AbiF, Abortive infection bacteriophage resistance protein [Defense mechanisms].	1.07663e-66
NZ_CP006664.1\|WP_034165092.1\|3654626_3654965_+\|phage-holin,-lambda-family	gnl\|CDD\|368287	pfam05106, Phage_holin_3_1, Phage holin family (Lysis protein S). This family represents one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.	2.95528e-33
NZ_CP006664.1\|WP_034165086.1\|3647850_3648171_+\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	3.92533e-39
NZ_CP006664.1\|WP_034165079.1\|3638589_3641112_-\|DNA-breaking-rejoining-protein	gnl\|CDD\|236615	PRK09709, PRK09709, exodeoxyribonuclease VIII.	5.8886e-24
NZ_CP006664.1\|WP_081926439.1\|3654967_3655519_+\|glycoside-hydrolase-family-108-protein	gnl\|CDD\|226439	COG3926, zliS, Lysozyme family protein [General function prediction only].	5.26937e-49
NZ_CP006664.1\|WP_034165090.1\|3654006_3654237_+\|ParD-like-family-protein	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	4.99509e-17

>NZ_CP006664.1|WP_071881930.1|3648428_3649394_+|Abi-family-protein
MAEPVKVHKEYDELIDLLLSRGMSVPDRDHAIKKISQVGYYRLSGFWYLCRIPHITPDNIRTRIDNVRPGTDFRAVYDLYLFDKRMRLLMMNALERIEVYVRSVIAHELGKISPLAYLDDSLINPKHLRTRSNGRCSARDEWLNKHRNEIAKSREDFIKWHENKYDGVPFWVAIEVWDFGLMSKYYAMLKDGYRNRILSRLGIAAGNGAIFQNWLSAMNVLRNRCAHHSRIWNKVNEPKLMPLPNYPYFERLSMNDDAYERMYGMIAVLWFLVKKIGPGSKWIRNIADLIDNDKPRLPGCNLTAMGLPNNNGFPRSLFDID
>NZ_CP006664.1|WP_034165086.1|3647850_3648171_+|DUF1364-domain-containing-protein
MKKSGAFRSRAWRESARGQGCTLQIPGICNGDPQTVVLCHLPSPMHGMGYKSDDFWAVYGCSACHDVLDGRAPYDWRPGEREEVMLAALYWTLRGRLGIELFQISC
>NZ_CP006664.1|WP_034165085.1|3647203_3647848_+|DUF1367-family-protein
MSSVQGKSPRRHKAEALGVLLPGGGIRYATDHDRDVMRAVPVGTPIALQPVGDRRNLKHHRKFFKLLALGMQYWVPAWEFVSRSESWVAHAVARRIAEAAADPALYDSVTREIAQGVLARLAEKRRGLFDAEVLKTEEAYLNHVMTQAGFCDVKPAPDGGAFRQRWSIAFANMDQATFDSIYRGVAGVIWNETLSQHFASEAEMALAVDQLMAF
>NZ_CP006664.1|WP_034165084.1|3646746_3647094_+|hypothetical-protein
MDVKPDVSFQERASINNGLRALSRERGCVGGSTQMSRVIIVAAGADWHTLRGLERRLLQLFPREGDTQAAISARLRQVSVLRHGLVKQVCKVRNPDSGKTVWFYRLVPARRDGGV
>NZ_CP006664.1|WP_034165082.1|3645076_3645373_-|hypothetical-protein
MAAITKGNSVRPAQKNARQRRHERRKAQAIQRELIESRIDHALGLKLAHRPALNRAEIASRRESHRVEVVVLCAGGRQQPQPSWDNCCLAQVALYRVS
>NZ_CP006664.1|WP_034165081.1|3642171_3644958_+|hypothetical-protein
MDFLKRALIKKVVDDLICLNGTEFEYFCKPIFEIIVGEESIHKGSNLFAKPISRTVDFSTNNFEIVGQCGTDNDYFDVFGKKFKELINLKLENTKPIKDIKSALKNSSQCSKIILFANQEAKGGRLDSVNKVIRHIGIKQEVVILDSESIATIVAENIGNQRFIFSIIDYLPTASQIYSAISMQNDLPPLPHDFVVREDEKSIIEAINQSYVSVVHGVSGIGKSKIVLGIAHKLKAEFDSIIWVNLGEHKNFNFKSVKVGDFDNNLNLANLCSTYKTLVILDNFFGDVSDIKSEFESFARDESRVIITSLEKIADKEICFHLSEMTNSEAKEVIEKRIDIDSKYIDEIVEHIGGHPLCLELVCQIIREENYNNHEIHDFLEEIGQITEEIVQGKSQTISDLVIGKYAGKFRREFSLISLLGAEQVSNYIFNKILGARAIRNLEKVSLIVRSGVNYSSIHSIVLLSIKNLFDSATEIHDIKNELCEVLWVENEYKKSGYYSFCVMHNDLLNKLYRDNLCDKHRKSLLYAIIQTTDNLVFKSKLIAEIEGFDLSNNNFEDILLLIENIELKLISIDRKLHEEKYQLESDEMIQKLNKINSALADGSNIKLLVEHHIAKIYLWKGDVVTSRNLFIELLNKFPDSEQCMLQLARIYDNEKSYDEVEKYVDKVLGNVSPEQSYSVILSFYDLISNSKYKSCREKYIQNRVEDFVADISFTLRSSFDHPYRVLSSLSGYLGYNLPEAFKSLSYNLPAPDNANKNTKLMMAYADIQMALYRLYKYSNDENKEQKLVEISKLAEQYYIDSQPSNDYENLKVAKFFIEIGRYGQAGIYLDKIEKKDPFFYQNTAKRLRGMGDDEGAIIAIDKSIEGAKRGDCGAWFLPSFLNDKAEILIKSDINEAIKVIFEAIDKQNDLKTKKAWQAKADRWAANC
>NZ_CP006664.1|WP_034165080.1|3641217_3641520_-|hypothetical-protein
MSIEALQNAVAILLQKPERPFAVGDVVIKKEGIGNITTRPHIGEKAIVSHVFATPVINLQEKCGTPYYSQLYDIRVAFFDRDGDLVELAEDARRFRHADD
>NZ_CP006664.1|WP_034165079.1|3638589_3641112_-|DNA-breaking-rejoining-protein
MPETFAFLTKAKKKSGKPDMMFWCSANNERIARSKLSIALDAAGLDEADYFNPQRTHLPVVDDLPPEDVLSSDFCRHYQMVDNDWVRRQEPLPPAKAAPPSGEPQPPSTPAEPDDTPLSFQQLPLEQRAALVQLYGPRDYYLDDLPTALEILNAEGEIYAGNYHLAVAIGKCRELAQQDAAGLDALIMQIQQRYNHNIPKWPELVTFIRQHMTAGALTTASGATRGTPVMLAPGRPFDTEFLRHTISCALQPANGYDLLTPDPAIVARAQELMAHRDKALTIWYKLLANTPGILEIHPDQIFALIQAAPESIAWDEGATRRFICENLGVIQPVPRRAPPPQEDRPGAAAPLNPAPGDMTALFAASPLATLLAEPAPNDAAPTTAQEQEQEQEQEQEQEQEQEQDESGVTPPAPPPRVEPGRYPGLSSADYHAANGISSTMLKDARISLMYFHGRHIAKTIPRQESPALLLGSLIHTLALEPEKFATEYALEPQLPPNVFTSSESMKKAIEAHNATLPAPLSTEQLKARLLVHNARLPAPLPLSGSADELAQLYAALPAAFQALDQPEGASAAAIKKCLKAYNASLPAPLKTGGSRDALLEQLAQIDPAAVEAERQNPQPLNTSGKKEELMASLRQIQPGARFADEILADWQRQAAGKIPVSQAQYTLCRAICDALFADTLAGPLLRHPQRETEVSYFGLDDNTGLEIRVRPDVEIDTGHARIGLDLKSVSLGYVKQDNLRARLHREIIERDYHLSAGMYCDLAMLDQFFWIFVNKDPGYHWVALVEASPDELALGRLEYQRQLAAIRQAMDSNYWPGPIVDVITDELTDYEQRRLENLAA
>NZ_CP006664.1|WP_034165078.1|3637509_3638580_-|recombinase-RecT
MKTETTDNSHNALIDNVTILTNGELFDRLMTLSRVMAGSGAMVPAHFQKSPDACMAVTMQAARWGMDPFAVAQKTHIVSGTLGYEAQLVNAIITTMSPTKDRLHYDWFGPWENVIGKFTEKTSAKGHSYIAPGWTLADEKGCGIKVWATLRGETAPRELVLMLSQAQVRNSTLWASDPKQQLAYLAAKRWARLYTPDVLLGVYSTDELENPIAREEKDITPSVSISDLVDSASSANDAQPEVPADSHDATLGESLRQALEEASTLEAIRQVEQRIAQHKSTLGSQLLFELRGKSQKKRSGYKAVQEIEAAFDALSPADRAAFQQLENLVNNRLAILPPGEQQRFTLALDDLRAEYA
>NZ_CP006664.1|WP_034165077.1|3637188_3637491_-|hypothetical-protein
MENHRKSPADSARQRQIQRIVADVITLLPLLRAGQPNPQFDGKSWRQWSADRLRDRAAAFCPPRPRSPHSTAAPQPAPLSPQDTAPVYRRGPGGAIYRGD
>NZ_CP006664.1|WP_034165087.1|3650937_3651714_+|Rha-family-transcriptional-regulator
MTHRLSVHTPSVTIHDGKAVTTSQAVAEYFIKRHDNVLRSIDSLECSPEFRLLNFKETSYQRENPNGGTGIGTKYYQMTKDGFVFLVMGFTGKKAAAFKEAYIAEFNRMERQLLTRQQGAYSTPKPLPLSDGEIKTLKWLIDSIVNPFRFRAAWNQGVWYALRQATGVPSPYPFTVADLPALVRELQRIMEIGHETRSLLQQLEKQVLQQVVRNRGELRPVLNHIQHEFRQLSLLEETRSRLNNVERQSLARLERRAG
>NZ_CP006664.1|WP_034165088.1|3651835_3652351_+|hypothetical-protein
MKEQFIFLRGFFSAIAGFLAIVSLTIAVLPNSDYALKMAFVTSVAGLGLFGSSAAILSYNISIVSSPNATKIHWFLAKQLYRRCFKDQGMIRMFCMAYFYLALLFFFFLDHVFGWSIFDDGYISKNIFSLVFSCFLIIAFVVVSIVAVISPTMCIYKVNKKVKNRYGFTGL
>NZ_CP006664.1|WP_034165089.1|3652439_3653258_+|hypothetical-protein
MPIAIEQLIKMFDPRSVSAECLHLIRAVPGITREQILGAFAAVAQRHPLGFDLLLARYREDRQAEQRARRAAADRVCRSPHPPYGTAVCQLTVTVALGRTLPAQRVVLAALLRKHGPRATLAAKQLADIQRQQKGLEKARVMLSEGDWRYQRNLAQHDALAGRSVALRRALADWADAEAARSPHCPRCRGSGQLLRPQPHCCDTCGGRGKISVTADHFLRSLADEGIVITPDVWRAEYPPWVNDTLNGLYQEMQRAGDALSIRLTLERQAVA
>NZ_CP006664.1|WP_144242831.1|3653491_3653890_+|hypothetical-protein
MKAPSECVYGKIAGEAYRLARDGMPPTQAWDKAVVGKDKPCPQAAFLGLCEAGYLKNIPAGSYQKSDSKNARYATVAANYLLAHRIIANDVTPSALWKVALANEVNPPRTYNSQMHIVLTLWEAGVIQSPPR
>NZ_CP006664.1|WP_034165090.1|3654006_3654237_+|ParD-like-family-protein
MATSVRLDDEFVNDAKIHADAESRSVPKQIEHWARIGRIAEENPDLPYSFIREVLLAQGEVNNQKVTRYVRRTKRQ
>NZ_CP006664.1|WP_034165091.1|3654211_3654541_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSAGPNASEIAVSQSRRFEKALDKLPESQLARVEDEIDKIIADPEIGELKKGDLRFLRVHKFTLNSQLVLLGYSWQSMRVALYLLTIGPHENFYREQKQHRKADLKLIG
>NZ_CP006664.1|WP_034165092.1|3654626_3654965_+|phage-holin,-lambda-family
MANMHHNPETLSELLLSWWQGDTPVGGVLLAIVTAAVRVTYLGGGWKRTALEGALCGALTLTVVATLDYFSLPKSLTPAIGGAIGFIGVQQIQRFALYILQRKLRMPTDKER
>NZ_CP006664.1|WP_081926439.1|3654967_3655519_+|glycoside-hydrolase-family-108-protein
MALTKDQIFDALLGREGGYVDHPHDKGGTTNWGITEKVARAHGYTGDMRNLTRAQALEIYESDYWSGPRFDLVADYSAPVAAELLDTGVNMGPSVPGKWLQRWLTAFNDGGRLYPDISADGMIGPRTLSALRAYLDARGAEGELVLLRALNCSQGDRYLALAEQRVQNESFLYGWVRERVTLS
>NZ_CP006664.1|WP_034172547.1|3655699_3656482_+|antA/AntB-antirepressor-family-protein
MNISVASFYTDASSNHHVVNEFADIVPVISGRIGERETNIVSARALHGALGVGRDFTNRIKGRVSQYGFVVGVDYIAVENLSSPKRASAKSRQQIEHDYFLTLNTAKELAMVERSEQGRAIRRYFIQCEEALQLTVPEVAARYRRKLKARIGVANLFKPMCSALESVRAEQGKMTQSHHYSNESNMISRIVLGGLTAKQWAGMNGVVGDPRDSMNAEQLEHLSYLESTNITLLDMGMDYPQRKAELIRLSQRWMARRLGS
>NZ_CP006664.1|WP_034165824.1|3656686_3657229_+|DUF2514-family-protein
MLSNIWKPLAIISLVALSLWGLSTWRYAAGYAAGKRLAEQAWQLKWETRNRDEETARANRERGERVEEQRRWQAMIKVKQNADQQLEQIKADAARSTADVERLRRTLSQLRQQLADRSPCRVSTVGGASSASAATGFLFADVLGESLQRNAALAAYADRARAAGLACERLYDAVTQSRAQ

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Crispr_ID: NZ_CP006664_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP006664_5

3952111-3952200

Orphan

Consensus_repeat	Method
GGAAATCCCCCATGGACGTGGGGAAGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP006664_5

>merge|NZ_CP006664|5|3952111-3952200|CRISPRCasFinder
GGAAATCCCCCATGGACGTGGGGAAGATCGATCCGGCGGGTCCTTTCGCGGCACCGTGTCCGGAAATCCCCCATGGATGTGGGGAAGATC

>NZ_CP006664|5|5|3952111-3952200|CRISPRCasFinder
GGAAATCCCCCATGGACGTGGGGAAGATC	GATCCGGCGGGTCCTTTCGCGGCACCGTGTCC
GGAAATCCCCCATGGATGTGGGGAAGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP006664.1\|WP_034163303.1\|3947677_3948514_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|179169
NZ_CP006664.1\|WP_034163297.1\|3954624_3955080_-\|type-VI-secretion-system-baseplate-subunit-TssE	unknown	unknown	gnl\|CDD\|274540
NZ_CP006664.1\|WP_034163309.1\|3942405_3943248_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|274268
NZ_CP006664.1\|WP_034163299.1\|3952657_3954037_-\|ImpA-family-type-VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|372143
NZ_CP006664.1\|WP_034163308.1\|3943859_3944252_-\|YcfL-family-protein	unknown	unknown	gnl\|CDD\|369276
NZ_CP006664.1\|WP_034163294.1\|3956651_3958406_-\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|377574
NZ_CP006664.1\|WP_034163295.1\|3955602_3956688_-\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|377755
NZ_CP006664.1\|WP_034163291.1\|3960778_3962380_-\|type-VI-secretion-system-protein-TssA	unknown	unknown	gnl\|CDD\|379913
NZ_CP006664.1\|WP_034163300.1\|3950617_3951832_+\|YadA-like-family-protein	unknown	unknown	gnl\|CDD\|380309
NZ_CP006664.1\|WP_034163296.1\|3955079_3955625_-\|type-VI-secretion-system-lipoprotein-TssJ	unknown	unknown	gnl\|CDD\|378947
NZ_CP006664.1\|WP_034163302.1\|3948579_3949341_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|181605
NZ_CP006664.1\|WP_034163292.1\|3959484_3960747_-\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829
NZ_CP006664.1\|WP_034163456.1\|3943237_3943834_-\|penicillin-binding-protein-activator-LpoB	unknown	unknown	gnl\|CDD\|225951
NZ_CP006664.1\|WP_034163307.1\|3944281_3944632_-\|purine-nucleoside-phosphoramidase	unknown	unknown	gnl\|CDD\|182648
NZ_CP006664.1\|WP_034163304.1\|3946752_3947268_-\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|182473
NZ_CP006664.1\|WP_034163455.1\|3958495_3958927_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_034163298.1\|3954139_3954610_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_034163293.1\|3959062_3959485_-\|DUF1240-domain-containing-protein	unknown	unknown	unknown
NZ_CP006664.1\|WP_034163305.1\|3945808_3946363_-\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|182473
NZ_CP006664.1\|WP_034163301.1\|3949666_3949918_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378107

Protein	Function_ID	Function_description	E-value
NZ_CP006664.1\|WP_034163303.1\|3947677_3948514_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	gnl\|CDD\|179169	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.	0
NZ_CP006664.1\|WP_034163297.1\|3954624_3955080_-\|type-VI-secretion-system-baseplate-subunit-TssE	gnl\|CDD\|274540	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein. The description for Pfam family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.	8.75785e-24
NZ_CP006664.1\|WP_034163309.1\|3942405_3943248_-\|phosphotransferase	gnl\|CDD\|274268	TIGR02721, Thiamine_kinase, thiamine kinase. Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	6.57998e-65
NZ_CP006664.1\|WP_034163299.1\|3952657_3954037_-\|ImpA-family-type-VI-secretion-system-protein	gnl\|CDD\|372143	pfam12486, VasL, Type VI secretion system, EvfB, or VasL. EvfB or VasL is a domain found on many Gram-negative proteins with an ImpA_N domain at the N-terminus. These proteins are expressed from the pathogenicity locus that forms the bacterial type VI secretion system. The exact function of VasL is not known. One E.coli member is annotated as being EvfB, though the E.coli equivalent of ImpA would be expected to be EvfG. It is possible that in many bacteria what is a single protein in one species, eg E.coli, is a fusion of two genes in others, which would explain an ImpA at the N-terminus and a VasL at the C-terminus.	6.25169e-47
NZ_CP006664.1\|WP_034163308.1\|3943859_3944252_-\|YcfL-family-protein	gnl\|CDD\|369276	pfam07233, DUF1425, Protein of unknown function (DUF1425). This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.	2.0875e-27
NZ_CP006664.1\|WP_034163294.1\|3956651_3958406_-\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|377574	pfam05947, T6SS_TssF, Type VI secretion system, TssF. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssF. TssF is homologs to phage tail proteins and is required for proper assembly of the Hcp tube (the T6SS inner tube) in bacteria.	0
NZ_CP006664.1\|WP_034163295.1\|3955602_3956688_-\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|377755	pfam06996, T6SS_TssG, Type VI secretion, TssG. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssG. TssG is homologs to phage tail proteins and is required for proper assembly of the Hcp tube in bacteria.One other member in this family, SciB (Q93IT4) from Salmonella enterica, is thought to be involved in virulence.	3.10173e-88
NZ_CP006664.1\|WP_034163291.1\|3960778_3962380_-\|type-VI-secretion-system-protein-TssA	gnl\|CDD\|379913	pfam16989, T6SS_VasJ, Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ. T6SS_VasJ is a family from Gram-negative bacteria that forms a component of the type VI pathogenic secretion system. In the case of the Escherichia coli RS218 strain UniProtKB:G8IRL4, EvfF,it represents expression of the full-length gene; whereas it is just the C-terminal part of EvfE, UniProtKB:G8IRL3. The N-terminal part of these sequences is in family ImpA_N, pfam06812.	5.14688e-82
NZ_CP006664.1\|WP_034163300.1\|3950617_3951832_+\|YadA-like-family-protein	gnl\|CDD\|380309	NF033478, YadA_autotrans, trimeric autotransporter adhesin YadA. YadA (Yersinia adhesin A) is a type Vc secretion system autotransporter found in at least two pathogenic Yersinia species, Y. enterocolitica and Y. pseudotuberculosis. It forms trimers, with three monomers contributing to a single outer membrane beta-barrel. It binds collagen and other components of the extracellular matrix.	3.79845e-21
NZ_CP006664.1\|WP_034163296.1\|3955079_3955625_-\|type-VI-secretion-system-lipoprotein-TssJ	gnl\|CDD\|378947	pfam12790, T6SS-SciN, Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113. One of the virulence mechanisms of E coli is the production of toxins which it produces from dedicated machineries called secretion systems. Seven secretion systems have been described, which assemble from 3 to up to more than 20 subunits. These secretion systems derive from or have co-evolved with bacterial organelles such as ABC transporters (type I), type IV pili (type 2), flagella (type 3), or conjugative machines (type IV). The type VI secretion system (T6SS) is present in most pathogens that have contact with animals, plants, or humans. SciN is a lipoprotein tethered to the outer membrane and expressed in the periplasm of E coli and is essential for T6S-dependent secretion of the Hcp-like SciD protein and for biofilm formation.	1.95664e-36
NZ_CP006664.1\|WP_034163302.1\|3948579_3949341_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	2.68398e-176
NZ_CP006664.1\|WP_034163292.1\|3959484_3960747_-\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	3.89115e-21
NZ_CP006664.1\|WP_034163456.1\|3943237_3943834_-\|penicillin-binding-protein-activator-LpoB	gnl\|CDD\|225951	COG3417, FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only].	3.87072e-48
NZ_CP006664.1\|WP_034163307.1\|3944281_3944632_-\|purine-nucleoside-phosphoramidase	gnl\|CDD\|182648	PRK10687, PRK10687, purine nucleoside phosphoramidase; Provisional.	2.71102e-70
NZ_CP006664.1\|WP_034163304.1\|3946752_3947268_-\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|182473	PRK10455, PRK10455, periplasmic protein; Reviewed.	2.82577e-29
NZ_CP006664.1\|WP_034163305.1\|3945808_3946363_-\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|182473	PRK10455, PRK10455, periplasmic protein; Reviewed.	5.91189e-31
NZ_CP006664.1\|WP_034163301.1\|3949666_3949918_+\|hypothetical-protein	gnl\|CDD\|378107	pfam08980, DUF1883, Domain of unknown function (DUF1883). This domain is found in a set of hypothetical bacterial proteins.	0.00845134

>NZ_CP006664.1|WP_034163300.1|3950617_3951832_+|YadA-like-family-protein
MKKRQFILLLSLLPLTPPLAYASNTSGAFSGSYQAGGAQADSQNAIALGNGAHVTAGAHSAVAVGVSATVNSSLDGIAIGSRAAIQGKADGATAIGSGSGSGSQIDSNNVGSNAIGINSHVHTDAAGANAIGDTASVGSAAAGANAIGLFSQIGDNASGAVALGSDASVGDNARSSVAIGDHAGVASGAANAVSIGDHSTNQRSQTVSFGNAVHQRQLTHVAAGTQSTDAVNLGQLNRVAMAGQQRQRLLQRNSVSIHANGQNIAGNRQQISDNGQQIADNAQDVRDNGQRIHHNAQTIQRHWRAVNEWQSGISRHLGALQHQIDNNRHEMRQIAAKDAALAGLFQPYSVGKFNASAALGGYKDQQAIAVGMGYRFTQRLAAKAGAAVNDSSLEYNVGVNYEFN
>NZ_CP006664.1|WP_034163301.1|3949666_3949918_+|hypothetical-protein
MSVVHTRLNLFGGDTLIVRCAHRFSVHLASDENPHLQQAAAAASLSQQPHGELYLSIPFSGLWSLIIDAQGDAIEHSVRYLPA
>NZ_CP006664.1|WP_034163302.1|3948579_3949341_+|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MILDTFSLQGKVAMVTGCDTGLGQGMALGLAQAGCDIVGVNVVEPTETAEKVRALGRQFVSLTADLRDQAVIPDLVAQAVAAYGHIDILVNNAGIIRRQDAIDFSEKDWDDVMNLNIKSVFFLSQAVARQFIAQGQGGKIINIASMLSFQGGIRVPSYTASKSAVMGVTRLLANEWAKHGINVNAIAPGYMATNNTQQLRSDESRNKEILERIPAARWGLPQDLMGPVVFLSSPASDYVNGYTLAVDGGWLAR
>NZ_CP006664.1|WP_034163303.1|3947677_3948514_+|5-dehydro-4-deoxy-D-glucuronate-isomerase
MEVRQSIHSDHAKQLDTAGLRREFLIDTVFDADRYTMVYSHIDRIIVGGIMPVTQSVSIGNEVGKQLGVGYFLERRELGVINIGGPGVIDIDGERYEIGPREALYVGQGARVLHFASLDSTCPAKFYYNCAPAHTHYPNRKITPADVSPQTLGDAKTSNRRTINKYMVPEVLPTCQLSMGLTELEEGNLWNTMPCHTHERRMEVYFYFNMAPDSCVFHMMGQPQETRHIVMRNEQAVISPSWSIHSGVGTQAYTFIWGMVGENQVFDDMDHLAITDLR
>NZ_CP006664.1|WP_034163304.1|3946752_3947268_-|Spy/CpxP-family-protein-refolding-chaperone
MRKLTVMALAASLALSVGAAWAQPQQDDDTPPCWQDGGMMMGSGYHHMMWRDGHHGRYRGGMFDGLNLSDAQRQQMRDIARQYAAQSDSAAWHDAFKQRQQIITGDKFDESAVRAQLDASGAKRNQQLVQRLKMEHQMYSVLTPEQKKAFNDNAERGLQQMQQYHDRWMHQ
>NZ_CP006664.1|WP_034163305.1|3945808_3946363_-|Spy/CpxP-family-protein-refolding-chaperone
MRKMTALLLASTLALGVGAANAADSTAAQVQNGMGNGMGHDMGNGMGHGNGVGTMHHQNQMMQKKGARHDGGMLAGIQLTPEQRQQIRDIRLQFRNTHPMPHSVDRFKQMHQLVASDKFDEAAARAQIEANNKTRNDAALARMKMENQIYNLLTPEQKTQVNQNFEKRMQLMLDRQGKMSQSQQ
>NZ_CP006664.1|WP_034163307.1|3944281_3944632_-|purine-nucleoside-phosphoramidase
MAEETIFSKIIRGEIPADVVYRDDLVTAFRDISPQAPSHVLIVPNRLIPTVNDVQPQDEAALGRMISAAAKIARQEGIDENGYRLVINCNRDAGQEVFHIHMHLLGGRPLGPLLAR
>NZ_CP006664.1|WP_034163308.1|3943859_3944252_-|YcfL-family-protein
MAGNRSWAALALLTPLWLAGCAAPSRIPINAEQRLVMEPGLLAAGVTATAPQITVQGSGRTAQAQVSYGDGEGGATLPLHYRFYWYDARGLEIAPAPAPARLTLHSGERVRLTSFSRDPQARQVRLYLYD
>NZ_CP006664.1|WP_034163456.1|3943237_3943834_-|penicillin-binding-protein-activator-LpoB
MKRTTGIALAALLLSGCQGLLPRGETPSQPPAPTTPAQPSVVPTPPPPPPAVTPVPQPPKMTSVDWQGSFAPLIDQLLGAQGVEAGSILLVDGVQNKTNGQLSMANASEVLRSALAGNPRFQMVSAAQLAQAKQRLGLAANDSLGSRSKAIGLARQVSAQYVLYTTVSGNVQSPRLAMQLMLVQSGEIIWSGKGPVAL
>NZ_CP006664.1|WP_034163309.1|3942405_3943248_-|phosphotransferase
MRSDPQAMRAVLCRRFPSLPGADWQFSLTQGLSGDNWRAQNGDSVTILLRPITPQRRHLGIDRRREGRALRMGAAAGLGPTCYGTVDGWLLAGWLPGETLAPGTLSTVQLAALVACLHRLPPRLTSRSLRRYCAAYWSQLAPGRRGFLAQRVHQRWQRRREPRPLKLALLHMDIHDGNLIGADGAVGLIDWEYAASGDIALDLAALSRNYALDGAGRAELVAAYCRQGGYRDAARLLHQLNRWLGWVDYMAWLWFELRWQQTQQPIYRRQADVLLRNLTQ
>NZ_CP006664.1|WP_034163299.1|3952657_3954037_-|ImpA-family-type-VI-secretion-system-protein
MNDITSRKIQTGGDPRTLSDYATLRDELNKLRHPARPDVNWHYVEKLCLSLFEQNGVELQTAAWYTLARTQLAGLLGLNEGLAILEALISHQWGALWPQPVHARMEILSSLSQRLQQRMRALPLNYSDLSQLYQAEQLLTKLGAVLQRLELKHLSQLDTLCTLMHNSAVRLENSDDISHTGSITQPGIVVMHGQGPSARDLADSPYEELCAPDCAVKWVYVAQHEQRPNVDVLAPAPTSVKKWKSFAVGMCTMLVISAAAVWSWQYIHRPDPLQIQFAASLAPLPAPLTPEQLDMLRQQAPIPQAVIAQTQQQLTRLDKLPPDWNIDNSRQLIEQARVLWPEQAKPLAQQWQQQINSAALPVEQLNGWYQGMTTLQKLSDRLNGLDEQRGKYMTVSELKSVVFSAIQSFNKSIPAEEQLRVLSQNAAGEPLPAAARVQMEIHLKQLTARYAEIKQNASK
>NZ_CP006664.1|WP_034163298.1|3954139_3954610_-|hypothetical-protein
MSVKSQFLKKLHARQPTPVSFTSRTQADIAEFRLRMTQLQEQMDAWLVGTGLNVETVSTSVTDLLIEGRAFEIAALALSIDDRSVKFVPAFLYGQGVTGCVEATFHDGGPVTPLGRLFMRSGTVNKWAFTPPGALSPSGQGFDESIFFSLILALLT
>NZ_CP006664.1|WP_034163297.1|3954624_3955080_-|type-VI-secretion-system-baseplate-subunit-TssE
MPQGHNTPSLYEMLTGHFTGGLPLSQVSEQNQVILSVLDNMQRILNCRTGTLAHLPDYGLPDMTRVLQGMPGTAHELLGTLSTVLLKYEPRLKKITVVLLEQNVPGELRYAIDAELKGIGLVRYGTEFMPEGRVMLRHLKQRQYIDTTTRR
>NZ_CP006664.1|WP_034163296.1|3955079_3955625_-|type-VI-secretion-system-lipoprotein-TssJ
MLRTNLTKTARWLLPLLAFSLAGCGVTQGITDGTKSAFNAVFYKKIKVLHLDFTAREALNTDSRESNSLSEPVVIRVWQLKDRKTFDKAVYQQLLKDGETILKVDLLASRDVVVKPGGDANLNMPMEEDAQFVAVVGLFRHPDMVNNTWKQVIERDDLDPDKPRILEAGNNHLTLQPLKDD
>NZ_CP006664.1|WP_034163295.1|3955602_3956688_-|type-VI-secretion-system-baseplate-subunit-TssG
MGREAQPSHSRLTPRLEADLHRINFYRLCQLLEKLNPDRPLMGSTSHPGDDPVRFAPHPGMGFPASELKAVEYDEDDDSKPPVIRTTFLGMYGVDSPLPTAYLDDITLRADGYEALQSFLDIFSHRILTQFYRIWRKYSYPASFEPGGTDSISQSLLGLVGLGIPGTENHIATPISRFLALLGGLRQPGKTQQGMQALVSLLAPDTTVRVSPYCLRPVEVSQPLGFYGDDDFLLDGNTPLGDEAMDANSQLLIALSTESEQESQGWRPDGLLYQDFLVMLRVYLGWRFKAKITLTTATRLLATPPLGEGPFWLGMNGVLGAEDEALPDDIPQTFTTELGYYTGLQPATPRQGNRCVTYKFN
>NZ_CP006664.1|WP_034163294.1|3956651_3958406_-|type-VI-secretion-system-baseplate-subunit-TssF
MDDLTLRYYDAEMRYLLEAGEEFAQAHPEQAAMLNLDKAGARDPYVERLFEGFAFLMGRLREKLDDDLPELTEGLVSLLWPHYLRTIPSLSVVEFSPDWLQMKEPMRVAKGFEVHSRPIGEKGTRCCYTTTKEINLQPLSLARASLATDPDGRSVVTLRFSCSSLADWSRLDLSHISLYLNADAPLACAMHEAFTMNVARMWLRLPGDVDRRPFDGHFTALGFGDDDALWPTGNSSFSGYQLLLEYFTFREKFMFTGLRGLETVAFPAELPWFEIDVVLAERWEHDFSFTEKHLRMNCVPVINLFPLESDPLTLNSLQTEYMLRPMRVQDGHTEIYAVDSVMSSGQHTYVPFSSFRHKGGMMRHEAPEYYYHTRVRRGPSGLHNTWLILGGEAFDNHTVPEDEHLSLTLTGTNGQLPRRALQSTVLDTVMKTTSASITVRNLCAPTLPCYPPAQDRFHWRVLSHLGSSFLSMMDNAEVLRGTLALYEWTSSEMNRRRLEAIIEVKHSETERFEQGYLVRGVQIEVTLDGHGFAGRGDICLFGEMLSRFFALYTDIYLFNRLIIILQPTGERLEWEEKHNRRIPG
>NZ_CP006664.1|WP_034163455.1|3958495_3958927_-|hypothetical-protein
MKYLFKQRVIAFVGVIFFMGLAVGVSYLGMYKLTEYLSYPDVVNFSFWVFFAAAFFFFFSPLLAMLFPIVFTGKQISVTSGKKLLKAVFIILGLTVLGMFIFSERYTASLMDKGYTECPGIPSGWMPGIAKKYAIEPSFCAQH
>NZ_CP006664.1|WP_034163293.1|3959062_3959485_-|DUF1240-domain-containing-protein
MFEEKIRPFLAIVIILGLCVLSIYLGGDIFRSYFSFEDSIVFSWLSIALIALPVVMIFPLIYFILMIVKGKDFAFKTMDNYVSYLKWGCIVIVILGVLFTCLYPKELLSKGYVRCNGVPSGWMAGTATRYVKDPSICVIN
>NZ_CP006664.1|WP_034163292.1|3959484_3960747_-|PAAR-domain-containing-protein
MAEGNYLVQGDKTTCGGRITTGAEDHTIFDKPVARERDSVTCGKHAGLFKIAGGIDNDTIHDRRMAGTLDSYSTCPCKAKFIPSMLDDTYEKSSGASTAESAAGFVAPVQTSQELPSYLTGEQKPTGFVSDYPVLKNTHDLPDAKLRMMSKQNNQDIMLLTLPEVFEVLSSWGAWKHGWVAITEGTPGQIIVNYGTNIKDVVTTSMLVGQLGSFGIKATVYVNHKGTELIKISGYPGVRKILNAPVFAAKNPKVVDIGIGKYGLAKSIIEGARLTFYVAAAYRTIDYIMNDETSFSEFIGSLATDAVKIGIASAVVWGVGLVLVTPWIVANLAIVVVVGGVAAITLNILDEKFGATDKVVAYIESAQQEFANKAREAEQGLLDLGAMFAEKMLIKGKDVIVEEVRNYIRDNLTSIQRRLY
>NZ_CP006664.1|WP_034163291.1|3960778_3962380_-|type-VI-secretion-system-protein-TssA
MSTLHNLVAACQADETQQRQQAQTRTENWQPWLAPVSVASPTGEDPGYDDDFQRIREEINKLSGIDTGLICTLAEKLLTTGAKDIRVATYYCWARLHQDGEAGFAEGLELLAGLLQRYGMQLHPQRDRSRKVALEWLAGTRVLDSLSLYPEVIREDAQRTAGALLLITDSLETEPKASRPELNALYRGLESRLMKAGGVDAVVPQNAGNKAQSHTSTHTTESDVPVLSHITSGQDLLAQARTLTGYLREQPDGWLAAHRLMKSLRHDTLSAIPALDAEGKTRIEPPRADQRAMLKRLYLQQSWLEILEQADSTFSRGANHLWLDLQWYTHQALVKSGQEVLAEIITADLKGLLRRLSGLETLAFNDGTPFADEVTLNWINQSVLDGMPGWREAPVSAVSETDNDILALEPEALEKADNEGLDATLQWLQTRPGTDNTRDKWLLRLLMARVAEQKGKNELALHLLGELDGAAQIITLTQWTPELLFEVKSRRLRLLRMKATRSETDKSRFQAEMDQLLAGLIALDPASSAVLCG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP006664_4	4.1\|3649688\|33\|NZ_CP006664\|CRISPRCasFinder,CRT	3649688-3649720	33	NZ_CP006664.1	820168-820200	0	1.0

1. spacer 4.1|3649688|33|NZ_CP006664|CRISPRCasFinder,CRT matches to position: 820168-820200, mismatch: 0, identity: 1.0

tttcatagcgtactctcccaaccttccgggcta	CRISPR spacer
tttcatagcgtactctcccaaccttccgggcta	Protospacer
*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP006664_1	1.4\|2675675\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675675-2675707	33	NC_026611	Edwardsiella phage GF-2 DNA, complete sequence	42569-42601	0	1.0
NZ_CP006664_1	1.1\|2675491\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675491-2675523	33	NC_017318	Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence	19284-19316	1	0.97
NZ_CP006664_1	1.6\|2675797\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675797-2675829	33	NC_017318	Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence	22921-22953	1	0.97
NZ_CP006664_1	1.7\|2675858\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675858-2675890	33	MH898687	Edwardsiella phage Edno5, complete genome	37760-37792	1	0.97
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	NC_026611	Edwardsiella phage GF-2 DNA, complete sequence	5053-5085	1	0.97
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	MH898687	Edwardsiella phage Edno5, complete genome	5050-5082	1	0.97
NZ_CP006664_1	1.12\|2676163\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2676163-2676195	33	NC_023555	Edwardsiella phage eiAU-183, complete genome	27366-27398	1	0.97
NZ_CP006664_1	1.12\|2676163\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2676163-2676195	33	NC_042029	Edwardsiella phage eiAU, complete genome	27364-27396	1	0.97
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	MF276773	Erwinia phage EtG, complete genome	2315-2347	1	0.97
NZ_CP006664_4	4.6\|3649994\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649994-3650026	33	NC_026611	Edwardsiella phage GF-2 DNA, complete sequence	10135-10167	1	0.97
NZ_CP006664_4	4.6\|3649994\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649994-3650026	33	MH898687	Edwardsiella phage Edno5, complete genome	10189-10221	1	0.97
NZ_CP006664_1	1.4\|2675675\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675675-2675707	33	MH898687	Edwardsiella phage Edno5, complete genome	40118-40150	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NZ_CP019203	Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence	84247-84279	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NZ_CP021835	Klebsiella pneumoniae strain AR_0120 plasmid tig00000516_pilon, complete sequence	105383-105415	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	MT374857	Yersinia phage vB_YpM_46, complete genome	1553-1585	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	AF063097	Bacteriophage P2, complete genome	1577-1609	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	LR595885	Escherichia virus P2_4E6b genome assembly, chromosome: 1	1580-1612	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NC_049386	Escherichia virus P2_2H1 genome assembly, chromosome: 1	1637-1669	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NC_001895	Enterobacteria phage P2, complete genome	1577-1609	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	AY135739	Bacteriophage WPhi, complete genome	1578-1610	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	MT374855	Yersinia phage vB_YpM_22, complete genome	5699-5731	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	MN016939	Bacteriophage R18C, complete genome	1578-1610	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NC_049388	Escherichia virus P2_4C9 genome assembly, chromosome: 1	1560-1592	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	KF322032	Enterobacteria phage fiAA91-ss, complete genome	1579-1611	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NC_028943	Escherichia phage pro483, complete genome	8708-8740	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	MT374858	Yersinia phage vB_YpM_50, complete genome	5559-5591	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NZ_CP025141	Klebsiella pneumoniae strain KP1768 plasmid KP1768_p1, complete sequence	28809-28841	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NZ_CP025144	Klebsiella pneumoniae strain NR5632 plasmid NR5632_p1, complete sequence	28661-28693	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NZ_CP025147	Klebsiella pneumoniae strain KP1766 plasmid KP1766_p1, complete sequence	34113-34145	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NZ_CP018956	Escherichia coli strain Ecol_316 plasmid pEC316_KPC, complete sequence	15483-15515	2	0.939
NZ_CP006664_4	4.9\|3650177\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3650177-3650209	33	NC_023555	Edwardsiella phage eiAU-183, complete genome	35169-35201	2	0.939
NZ_CP006664_4	4.9\|3650177\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3650177-3650209	33	HQ824635	Edwardsiella phage eiDWF phage structural protein (eiDWFOrf34) gene, complete cds	1149-1181	2	0.939
NZ_CP006664_4	4.9\|3650177\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3650177-3650209	33	HQ824580	Edwardsiella phage eiAU phage structural protein (eiAUOrf33) gene, complete cds	1149-1181	2	0.939
NZ_CP006664_4	4.9\|3650177\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3650177-3650209	33	NC_042029	Edwardsiella phage eiAU, complete genome	35167-35199	2	0.939
NZ_CP006664_4	4.9\|3650177\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3650177-3650209	33	HQ824684	Edwardsiella phage eiMSLS phage structural protein (eiMSLSOrf31) gene, complete cds	1149-1181	2	0.939
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	KC139521	Salmonella phage FSL SP-004, complete genome	1533-1565	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NC_005340	Enterobacteria phage PsP3, complete genome	2316-2348	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	MK972710	Salmonella phage SI22, complete genome	2322-2354	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NC_049390	Escherichia virus P2_4A7b genome assembly, chromosome: 1	1579-1611	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NC_049387	Escherichia virus P2_4B2 genome assembly, chromosome: 1	1577-1609	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	U32222	Bacteriophage 186, complete sequence	2314-2346	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	AY251033	Bacteriophage L-413C, complete genome	1579-1611	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NC_004745	Yersinia phage L-413C, complete genome	1579-1611	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NC_049385	Escherichia virus P2_2H4 genome assembly, chromosome: 1	1601-1633	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NC_049459	Salmonella phage SW9, complete genome	2335-2367	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	KT630644	Salmonella phage SEN1, complete genome	1596-1628	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	MK907239	Escherichia phage vB_EcoM-12474V, complete genome	32087-32119	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	MK907238	Escherichia phage vB_EcoM-12474IV, complete genome	32108-32140	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	MK907237	Escherichia phage vB_EcoM-12474III, complete genome	3212-3244	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	MK907236	Escherichia phage vB_EcoM-12474II, complete genome	32087-32119	3	0.909
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	MK416018	Klebsiella phage ST147-VIM1phi7.1, complete genome	5006-5038	4	0.879
NZ_CP006664_4	4.5\|3649933\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3649933-3649965	33	NC_028896	Escherichia phage pro147, complete genome	20754-20786	4	0.879
NZ_CP006664_1	1.1\|2675491\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675491-2675523	33	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	2495608-2495640	6	0.818
NZ_CP006664_1	1.1\|2675491\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675491-2675523	33	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1131695-1131727	6	0.818
NZ_CP006664_2	2.1\|2769694\|28\|NZ_CP006664\|CRISPRCasFinder	2769694-2769721	28	MG945460	UNVERIFIED: Microviridae sp. isolate 89-1602, complete genome	1518-1545	7	0.75
NZ_CP006664_1	1.1\|2675491\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675491-2675523	33	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	692704-692736	8	0.758
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1520119-1520151	8	0.758
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1524787-1524819	8	0.758
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	MH338234	Mycobacterium phage Crucio, complete genome	42498-42530	9	0.727
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	MF919531	Mycobacterium phage SnapTap, complete genome	42559-42591	9	0.727
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	NC_029043	Mycobacterium phage SweetiePie, complete genome	42691-42723	9	0.727
NZ_CP006664_5	5.1\|3952140\|32\|NZ_CP006664\|CRISPRCasFinder	3952140-3952171	32	NZ_CP050953	Rhodococcus sp. DMU1 plasmid unnamed	639428-639459	9	0.719
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	MH697591	Mycobacterium phage QueenBeesly, complete genome	42480-42512	10	0.697
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	MT498060	Mycobacterium Phage FiringLine, complete genome	42480-42512	10	0.697
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	KM463009	Mycobacterium phage Power, complete genome	42523-42555	10	0.697
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	MT498066	Mycobacterium phage Georgie2, complete genome	42525-42557	10	0.697
NZ_CP006664_1	1.8\|2675919\|33\|NZ_CP006664\|PILER-CR,CRISPRCasFinder,CRT	2675919-2675951	33	MN234203	Mycobacterium phage SemperFi, complete genome	42748-42780	10	0.697
NZ_CP006664_4	4.8\|3650116\|33\|NZ_CP006664\|CRISPRCasFinder,CRT,PILER-CR	3650116-3650148	33	NZ_CP032520	Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence	185417-185449	10	0.697

1. spacer 1.4|2675675|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NC_026611 (Edwardsiella phage GF-2 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

tgcaactactcaacatcgtagcgccgaaaggaa	CRISPR spacer
tgcaactactcaacatcgtagcgccgaaaggaa	Protospacer
*********************************

2. spacer 1.1|2675491|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NC_017318 (Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence) position: , mismatch: 1, identity: 0.97

ctcggcatgattaccgatagcgataaagctgct	CRISPR spacer
ctcggcatgattaccgatagcgataaagctgcc	Protospacer
********************************.

3. spacer 1.6|2675797|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NC_017318 (Edwardsiella tarda FL6-60 plasmid pFL6-60, complete sequence) position: , mismatch: 1, identity: 0.97

tctggcccacgaaaaaacaccctggcgccgggg	CRISPR spacer
tctggcccacgaaaaaacaccctggcaccgggg	Protospacer
**************************.******

4. spacer 1.7|2675858|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to MH898687 (Edwardsiella phage Edno5, complete genome) position: , mismatch: 1, identity: 0.97

cgtttggtgatgttagttgcgctgatcgtctcc	CRISPR spacer
cgtttggtgatgttagtggcgctgatcgtctcc	Protospacer
***************** ***************

5. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NC_026611 (Edwardsiella phage GF-2 DNA, complete sequence) position: , mismatch: 1, identity: 0.97

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
tcgccgacagcgcattcagcgccgacgcggcct	Protospacer
**************.******************

6. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to MH898687 (Edwardsiella phage Edno5, complete genome) position: , mismatch: 1, identity: 0.97

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
tcgccgacagcgcattcagcgccgacgcggcct	Protospacer
**************.******************

7. spacer 1.12|2676163|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NC_023555 (Edwardsiella phage eiAU-183, complete genome) position: , mismatch: 1, identity: 0.97

caatcggcaacgatccaaaatggttgtcatgag	CRISPR spacer
caatcggcaacgatccaaaatggttgccatgag	Protospacer
**************************.******

8. spacer 1.12|2676163|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NC_042029 (Edwardsiella phage eiAU, complete genome) position: , mismatch: 1, identity: 0.97

caatcggcaacgatccaaaatggttgtcatgag	CRISPR spacer
caatcggcaacgatccaaaatggttgccatgag	Protospacer
**************************.******

9. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MF276773 (Erwinia phage EtG, complete genome) position: , mismatch: 1, identity: 0.97

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tgaccgaaaaatacaacgtcgaatacatcggca	Protospacer
* *******************************

10. spacer 4.6|3649994|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_026611 (Edwardsiella phage GF-2 DNA, complete sequence) position: , mismatch: 1, identity: 0.97

gagccatacaccgggaacacgttttcatagcca	CRISPR spacer
gagccatacaccgggaacacgttttcatagccg	Protospacer
********************************.

11. spacer 4.6|3649994|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MH898687 (Edwardsiella phage Edno5, complete genome) position: , mismatch: 1, identity: 0.97

gagccatacaccgggaacacgttttcatagcca	CRISPR spacer
gagccatacaccgggaacacgttttcatagccg	Protospacer
********************************.

12. spacer 1.4|2675675|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to MH898687 (Edwardsiella phage Edno5, complete genome) position: , mismatch: 2, identity: 0.939

tgcaactactcaacatcgtagcgccgaaaggaa	CRISPR spacer
tgcaactactcaacattatagcgccgaaaggaa	Protospacer
****************..***************

13. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggta	Protospacer
*.*****************************.*

14. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021835 (Klebsiella pneumoniae strain AR_0120 plasmid tig00000516_pilon, complete sequence) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggaa	Protospacer
*.***************************** *

15. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MT374857 (Yersinia phage vB_YpM_46, complete genome) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggaa	Protospacer
*.***************************** *

16. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to AF063097 (Bacteriophage P2, complete genome) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggta	Protospacer
*.*****************************.*

17. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to LR595885 (Escherichia virus P2_4E6b genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggta	Protospacer
*.*****************************.*

18. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_049386 (Escherichia virus P2_2H1 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggta	Protospacer
*.*****************************.*

19. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_001895 (Enterobacteria phage P2, complete genome) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggta	Protospacer
*.*****************************.*

20. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to AY135739 (Bacteriophage WPhi, complete genome) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggta	Protospacer
*.*****************************.*

21. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MT374855 (Yersinia phage vB_YpM_22, complete genome) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggta	Protospacer
*.*****************************.*

22. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MN016939 (Bacteriophage R18C, complete genome) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggta	Protospacer
*.*****************************.*

23. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_049388 (Escherichia virus P2_4C9 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggta	Protospacer
*.*****************************.*

24. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to KF322032 (Enterobacteria phage fiAA91-ss, complete genome) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggga	Protospacer
*.***************************** *

25. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_028943 (Escherichia phage pro483, complete genome) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggaa	Protospacer
*.***************************** *

26. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MT374858 (Yersinia phage vB_YpM_50, complete genome) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggta	Protospacer
*.*****************************.*

27. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025141 (Klebsiella pneumoniae strain KP1768 plasmid KP1768_p1, complete sequence) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggaa	Protospacer
*.***************************** *

28. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025144 (Klebsiella pneumoniae strain NR5632 plasmid NR5632_p1, complete sequence) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggaa	Protospacer
*.***************************** *

29. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025147 (Klebsiella pneumoniae strain KP1766 plasmid KP1766_p1, complete sequence) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggaa	Protospacer
*.***************************** *

30. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018956 (Escherichia coli strain Ecol_316 plasmid pEC316_KPC, complete sequence) position: , mismatch: 2, identity: 0.939

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgtcgaatacatcggaa	Protospacer
*.***************************** *

31. spacer 4.9|3650177|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_023555 (Edwardsiella phage eiAU-183, complete genome) position: , mismatch: 2, identity: 0.939

tctacgttgcccgctgccagggctaaggccgaa	CRISPR spacer
tctacgttgcccgccgccagggctaaggcagaa	Protospacer
**************.************** ***

32. spacer 4.9|3650177|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to HQ824635 (Edwardsiella phage eiDWF phage structural protein (eiDWFOrf34) gene, complete cds) position: , mismatch: 2, identity: 0.939

tctacgttgcccgctgccagggctaaggccgaa	CRISPR spacer
tctacgttgcccgccgccagggctaaggcagaa	Protospacer
**************.************** ***

33. spacer 4.9|3650177|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to HQ824580 (Edwardsiella phage eiAU phage structural protein (eiAUOrf33) gene, complete cds) position: , mismatch: 2, identity: 0.939

tctacgttgcccgctgccagggctaaggccgaa	CRISPR spacer
tctacgttgcccgccgccagggctaaggcagaa	Protospacer
**************.************** ***

34. spacer 4.9|3650177|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_042029 (Edwardsiella phage eiAU, complete genome) position: , mismatch: 2, identity: 0.939

tctacgttgcccgctgccagggctaaggccgaa	CRISPR spacer
tctacgttgcccgccgccagggctaaggcagaa	Protospacer
**************.************** ***

35. spacer 4.9|3650177|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to HQ824684 (Edwardsiella phage eiMSLS phage structural protein (eiMSLSOrf31) gene, complete cds) position: , mismatch: 2, identity: 0.939

tctacgttgcccgctgccagggctaaggccgaa	CRISPR spacer
tctacgttgcccgccgccagggctaaggcagaa	Protospacer
**************.************** ***

36. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to KC139521 (Salmonella phage FSL SP-004, complete genome) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcactgagaaatacaacgtcgaatacatcggca	Protospacer
*.**.**.*************************

37. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_005340 (Enterobacteria phage PsP3, complete genome) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcactgagaaatacaacgtcgaatacatcggca	Protospacer
*.**.**.*************************

38. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MK972710 (Salmonella phage SI22, complete genome) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcactgagaaatacaacgtcgaatacatcggca	Protospacer
*.**.**.*************************

39. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_049390 (Escherichia virus P2_4A7b genome assembly, chromosome: 1) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatacaacgttgaatacatcggaa	Protospacer
*.*****************.*********** *

40. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_049387 (Escherichia virus P2_4B2 genome assembly, chromosome: 1) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatataacgtcgaatacatcggta	Protospacer
*.***********.*****************.*

41. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to U32222 (Bacteriophage 186, complete sequence) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tgaccgagaaatacagcgtcgaatacatcggca	Protospacer
* *****.*******.*****************

42. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to AY251033 (Bacteriophage L-413C, complete genome) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatataacgtcgaatacatcggta	Protospacer
*.***********.*****************.*

43. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_004745 (Yersinia phage L-413C, complete genome) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatataacgtcgaatacatcggta	Protospacer
*.***********.*****************.*

44. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_049385 (Escherichia virus P2_2H4 genome assembly, chromosome: 1) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatataacgtcgaatacatcggta	Protospacer
*.***********.*****************.*

45. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_049459 (Salmonella phage SW9, complete genome) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcactgagaaatacaacgtcgaatacatcggca	Protospacer
*.**.**.*************************

46. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to KT630644 (Salmonella phage SEN1, complete genome) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcactgagaaatacaacgtcgaatacatcggca	Protospacer
*.**.**.*************************

47. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MK907239 (Escherichia phage vB_EcoM-12474V, complete genome) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatataacgtcgaatacatcggta	Protospacer
*.***********.*****************.*

48. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MK907238 (Escherichia phage vB_EcoM-12474IV, complete genome) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatataacgtcgaatacatcggta	Protospacer
*.***********.*****************.*

49. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MK907237 (Escherichia phage vB_EcoM-12474III, complete genome) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatataacgtcgaatacatcggta	Protospacer
*.***********.*****************.*

50. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MK907236 (Escherichia phage vB_EcoM-12474II, complete genome) position: , mismatch: 3, identity: 0.909

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatataacgtcgaatacatcggta	Protospacer
*.***********.*****************.*

51. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to MK416018 (Klebsiella phage ST147-VIM1phi7.1, complete genome) position: , mismatch: 4, identity: 0.879

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgagaaatacaacgtcgagtacatcggta	Protospacer
*.*****.**************.********.*

52. spacer 4.5|3649933|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NC_028896 (Escherichia phage pro147, complete genome) position: , mismatch: 4, identity: 0.879

ttaccgaaaaatacaacgtcgaatacatcggca	CRISPR spacer
tcaccgaaaaatataacgttgaatacatcggga	Protospacer
*.***********.*****.*********** *

53. spacer 1.1|2675491|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.818

ctcggcatgattaccgatagcgata-aagctgct	CRISPR spacer
ctcggcatcattaccgatggcgatattcgccgc-	Protospacer
******** *********.******   **.**

54. spacer 1.1|2675491|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 6, identity: 0.818

ctcggcatgattaccgatagcgata-aagctgct	CRISPR spacer
ctcggcatcattaccgatggcgatattcgccgc-	Protospacer
******** *********.******   **.**

55. spacer 2.1|2769694|28|NZ_CP006664|CRISPRCasFinder matches to MG945460 (UNVERIFIED: Microviridae sp. isolate 89-1602, complete genome) position: , mismatch: 7, identity: 0.75

gagcgcgatgtcccatgataatatgggt	CRISPR spacer
ttttgatatgtcccatgaaaatatgggt	Protospacer
   .*  *********** *********

56. spacer 1.1|2675491|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 8, identity: 0.758

ctcggcatgattaccgatagcgataaagctgct	CRISPR spacer
gtcggcatgatcaccgatcgcgatatcgccatt	Protospacer
 **********.****** ******  **...*

57. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.758

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
tttccgccagcgcaatcagcgccgacggtgaat	Protospacer
*. *** ******* ************  *  *

58. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.758

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
tttccgccagcgcaatcagcgccgacggtgaat	Protospacer
*. *** ******* ************  *  *

59. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to MH338234 (Mycobacterium phage Crucio, complete genome) position: , mismatch: 9, identity: 0.727

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
cgacctcaagggcactcagctccgacgcggcca	Protospacer
. .**   ** ********* ***********

60. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to MF919531 (Mycobacterium phage SnapTap, complete genome) position: , mismatch: 9, identity: 0.727

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
cgacctcaagggcactcagctccgacgcggcca	Protospacer
. .**   ** ********* ***********

61. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to NC_029043 (Mycobacterium phage SweetiePie, complete genome) position: , mismatch: 9, identity: 0.727

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
cgacctcaagggcactcagctccgacgcggcca	Protospacer
. .**   ** ********* ***********

62. spacer 5.1|3952140|32|NZ_CP006664|CRISPRCasFinder matches to NZ_CP050953 (Rhodococcus sp. DMU1 plasmid unnamed) position: , mismatch: 9, identity: 0.719

gatccggcgggtcctttcgcggcaccgtgtcc	CRISPR spacer
gaccgggcgggtcctttcgcggcataccggtt	Protospacer
**.* *******************.  .* ..

63. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to MH697591 (Mycobacterium phage QueenBeesly, complete genome) position: , mismatch: 10, identity: 0.697

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
cgatctcaagggcactcagctccgacgcggcca	Protospacer
. ..*   ** ********* ***********

64. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to MT498060 (Mycobacterium Phage FiringLine, complete genome) position: , mismatch: 10, identity: 0.697

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
cgatctcaagggcactcagctccgacgcggcca	Protospacer
. ..*   ** ********* ***********

65. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to KM463009 (Mycobacterium phage Power, complete genome) position: , mismatch: 10, identity: 0.697

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
cgatctcaagggcactcagctccgacgcggcca	Protospacer
. ..*   ** ********* ***********

66. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to MT498066 (Mycobacterium phage Georgie2, complete genome) position: , mismatch: 10, identity: 0.697

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
cgatctcaagggcactcagctccgacgcggcca	Protospacer
. ..*   ** ********* ***********

67. spacer 1.8|2675919|33|NZ_CP006664|PILER-CR,CRISPRCasFinder,CRT matches to MN234203 (Mycobacterium phage SemperFi, complete genome) position: , mismatch: 10, identity: 0.697

tcgccgacagcgcactcagcgccgacgcggcct	CRISPR spacer
cgatctcaagggcactcagctccgacgcggcca	Protospacer
. ..*   ** ********* ***********

68. spacer 4.8|3650116|33|NZ_CP006664|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032520 (Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

cgggaagcatctggcggtgccaccgataagaca	CRISPR spacer
ggctgcgcttctggctgtgccaccgataagggt	Protospacer
 *  . ** ****** **************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

504 : 32437

Cronobacter_phage(41.67%)

head,plate,tRNA,holin,tail,capsid,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038631687.1\|504_768_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	1.4e-12	46.5
WP_034165800.1\|832_1888_-\|portal	phage portal protein	Q94MZ7	Haemophilus_virus	1.0e-85	53.1
WP_034165801.1\|1862_3662_-\|terminase	terminase	A5X9H3	Aeromonas_virus	9.8e-190	55.2
WP_034165802.1\|3848_4748_+\|capsid	GPO family capsid scaffolding protein	R9TRS3	Vibrio_phage	2.6e-42	36.0
WP_034165803.1\|4762_5848_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	2.5e-95	57.2
WP_034165804.1\|5804_6506_+\|terminase	terminase	A5X9H6	Aeromonas_virus	4.9e-52	48.7
WP_034165805.1\|6618_7101_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.0e-28	41.0
WP_034165806.1\|7111_7591_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	7.7e-25	38.4
WP_034165807.1\|7577_8312_+	phage virion morphogenesis protein	F1BUL6	Cronobacter_phage	5.5e-38	42.9
WP_034165808.1\|8316_9489_+	DUF2586 family protein	F1BUL5	Cronobacter_phage	9.5e-101	49.6
WP_034165809.1\|9485_9941_+	DUF2597 family protein	A5X9I1	Aeromonas_virus	1.6e-43	56.3
WP_034165810.1\|9944_10235_+\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	9.1e-13	42.2
WP_034165811.1\|10251_10803_+	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	1.2e-66	68.5
WP_049703819.1\|10833_11127_+\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	9.8e-15	43.2
WP_158407642.1\|11171_11312_+	hypothetical protein	A5X9I8	Aeromonas_virus	4.0e-06	54.3
WP_034165812.1\|11315_13430_+\|tail	phage tail tape measure protein	A0A2I7RNI7	Vibrio_phage	1.5e-104	38.9
WP_034165813.1\|13419_13773_+	DUF2590 family protein	Q94MY3	Haemophilus_virus	9.7e-25	58.2
WP_034165814.1\|13765_14950_+\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	6.1e-140	61.6
WP_034165815.1\|14946_15516_+	hypothetical protein	F1BUK5	Cronobacter_phage	2.2e-47	54.2
WP_051905066.1\|15512_17207_+\|tail	tail fiber protein	F1BUK3	Cronobacter_phage	1.3e-71	46.6
WP_034165816.1\|17206_17818_+\|tail	tail assembly chaperone	Q9MCR5	Enterobacteria_phage	2.3e-29	37.6
WP_034165817.1\|17823_18543_+	hypothetical protein	NA	NA	NA	NA
WP_034165818.1\|18514_19099_+	hypothetical protein	A5X9J7	Aeromonas_virus	1.9e-25	43.8
WP_034165819.1\|19095_20844_+	hypothetical protein	F1BUJ7	Cronobacter_phage	9.8e-102	41.5
WP_012848878.1\|22077_22626_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_034165459.1\|22680_24513_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_034165460.1\|24505_25162_-	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_012848881.1\|25726_25951_+	DUF2594 family protein	NA	NA	NA	NA
WP_034165461.1\|26064_26394_+	GlpM family protein	NA	NA	NA	NA
WP_034165462.1\|26428_27283_-	protein deglycase HchA	NA	NA	NA	NA
WP_144242784.1\|27891_28137_-	hypothetical protein	NA	NA	NA	NA
WP_015461748.1\|28630_29884_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.4e-20	92.6
WP_071881864.1\|30115_30757_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_034165465.1\|30794_31241_+	NUDIX hydrolase	NA	NA	NA	NA
WP_034165467.1\|31333_32437_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_2

164072 : 171898

Escherichia_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034162478.1\|164072_164687_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	2.4e-26	38.1
WP_034162479.1\|164743_165604_-	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	5.8e-23	33.5
WP_012849025.1\|165605_166223_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.1e-79	62.1
WP_034162480.1\|166233_168681_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.6e-220	50.3
WP_034162481.1\|169141_170434_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.3e-90	43.8
WP_034162482.1\|170554_171898_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	3.2e-76	39.6

DBSCAN-SWA_3

417544 : 510492

Enterobacteria_phage(40.0%)

protease,plate,holin,tail,integrase,portal,terminase,tRNA

attL 443087:443101|attR 478725:478739

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095666572.1\|417544_418357_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_034162653.1\|418371_419382_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_034162654.1\|419490_420618_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	1.8e-19	29.6
WP_034162655.1\|420756_421260_-	protein disulfide oxidoreductase	NA	NA	NA	NA
WP_049703846.1\|421256_421859_-	DsbA family protein	NA	NA	NA	NA
WP_034162656.1\|421868_423875_-	thioredoxin family protein	NA	NA	NA	NA
WP_034162657.1\|423927_424287_-	hypothetical protein	NA	NA	NA	NA
WP_034162658.1\|424516_424876_+	DUF4186 domain-containing protein	NA	NA	NA	NA
WP_038631172.1\|425024_425573_+	acid resistance repetitive basic protein Asr	NA	NA	NA	NA
WP_034162659.1\|425644_426391_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_034162660.1\|426707_427919_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_034162661.1\|428091_430116_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_034162662.1\|430248_430530_-	YfcL family protein	NA	NA	NA	NA
WP_095666537.1\|430573_431122_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_034162664.1\|431222_432023_-	TSUP family transporter	NA	NA	NA	NA
WP_071881867.1\|432335_433790_-	SH3 domain-containing C40 family peptidase	NA	NA	NA	NA
WP_174434942.1\|434121_434682_+	hypothetical protein	NA	NA	NA	NA
WP_045424188.1\|434931_435447_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_034162666.1\|435443_436931_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_034162667.1\|437000_437492_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_034162668.1\|437622_438843_+	hypothetical protein	NA	NA	NA	NA
WP_034162669.1\|438851_439328_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_034162670.1\|439331_441173_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_034162671.1\|441169_442195_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_034162672.1\|442346_444914_+	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	3.2e-85	30.6
443087:443101	attL	NA	NA	NA	NA
WP_034162673.1\|444913_446899_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.3e-46	28.5
WP_012849267.1\|446993_447296_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_034162674.1\|447309_448380_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_034162675.1\|448366_449008_+	type VI secretion lipoprotein TssJ	NA	NA	NA	NA
WP_034162676.1\|449106_450495_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_034162677.1\|450491_451142_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_034162678.1\|451138_454921_+	type VI secretion system protein ImpL	NA	NA	NA	NA
WP_034162679.1\|455110_455941_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_034162680.1\|455954_457043_-	chorismate synthase	A0A291AU41	Pandoravirus	4.5e-89	48.8
WP_034162681.1\|457136_458069_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_034162682.1\|458279_458825_+	endonuclease SmrB	NA	NA	NA	NA
WP_034162683.1\|458876_459353_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_015461965.1\|459745_460042_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_034162684.1\|460439_461756_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_034162685.1\|462040_462808_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_081854045.1\|462877_464095_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_034162686.1\|464091_464595_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_034162687.1\|464591_465146_-	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_034162688.1\|465142_467110_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_034162731.1\|467106_467595_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_034162689.1\|467594_467828_-	heme exporter protein CcmD	NA	NA	NA	NA
WP_034162690.1\|467824_468577_-	heme ABC transporter permease	NA	NA	NA	NA
WP_034162691.1\|468753_469413_-	heme exporter protein CcmB	NA	NA	NA	NA
WP_034162692.1\|469409_470033_-	cytochrome c biogenesis heme-transporting ATPase CcmA	A0A2H4PQG7	Staphylococcus_phage	1.0e-05	23.2
WP_034162693.1\|470729_470939_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_034162694.1\|470950_471940_+	HlyD family secretion protein	NA	NA	NA	NA
WP_034162695.1\|471948_473613_+	FUSC family protein	NA	NA	NA	NA
WP_034162696.1\|474048_475206_+\|integrase	tyrosine-type recombinase/integrase	K7P7E1	Enterobacteria_phage	1.5e-175	78.2
WP_034162732.1\|475305_475659_-\|tail	tail fiber assembly protein	E7EKV7	Edwardsiella_phage	1.8e-31	57.4
WP_071881868.1\|477452_478325_-	hypothetical protein	NA	NA	NA	NA
WP_034162697.1\|478504_479167_-	Ail/Lom family outer membrane beta-barrel protein	A0A1U9AJC8	Stx1_converting_phage	1.3e-14	30.4
478725:478739	attR	NA	NA	NA	NA
WP_071881869.1\|479220_480222_-	hypothetical protein	NA	NA	NA	NA
WP_034162698.1\|480218_483338_-	host specificity protein J	A0A0P0ZEQ8	Stx2-converting_phage	0.0e+00	58.6
WP_071881870.1\|483378_484032_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.0e-72	64.2
WP_034162699.1\|483929_484667_-\|tail	phage tail protein	A0A0P0ZDT1	Stx2-converting_phage	1.8e-105	70.2
WP_034162700.1\|484755_485292_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	7.1e-27	56.4
WP_034162701.1\|485370_486069_-\|tail	phage minor tail protein L	A0A0P0ZD44	Stx2-converting_phage	1.3e-92	70.3
WP_014526494.1\|486084_486414_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	6.9e-33	56.9
WP_034162702.1\|486413_489320_-\|tail	phage tail tape measure protein	A5LH38	Enterobacteria_phage	1.2e-120	39.2
WP_034162703.1\|489309_489636_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	3.2e-14	44.1
WP_014526491.1\|489644_490043_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	3.4e-10	38.0
WP_014526490.1\|490095_490866_-\|tail	tail protein	A0A291AWU6	Escherichia_phage	5.2e-39	42.6
WP_014526489.1\|490867_491281_-\|tail	minor tail component of prophage	A5LH34	Enterobacteria_phage	2.2e-20	40.5
WP_034162704.1\|491277_491856_-\|tail	phage tail protein	NA	NA	NA	NA
WP_034162705.1\|491867_492149_-	hypothetical protein	K7PH43	Enterobacteria_phage	8.8e-13	41.8
WP_034162706.1\|492141_492465_-	DUF2190 family protein	A5LH31	Enterobacteria_phage	6.3e-31	66.0
WP_049703849.1\|492557_494573_-\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	1.5e-279	72.9
WP_014526543.1\|494529_496056_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.5e-183	65.2
WP_014526542.1\|496055_496259_-	hypothetical protein	A5LH28	Enterobacteria_phage	7.5e-06	45.7
WP_014526541.1\|496255_498349_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	1.0e-294	70.7
WP_014526540.1\|498348_498885_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	7.8e-50	59.8
WP_014526537.1\|499567_499780_-	hypothetical protein	NA	NA	NA	NA
WP_034162708.1\|499893_500181_-	hypothetical protein	Q8W634	Enterobacteria_phage	1.9e-26	57.6
WP_034171747.1\|500377_500779_-	hypothetical protein	A0A192Y6H8	Salmonella_phage	2.9e-17	47.5
WP_034168845.1\|500882_501731_-	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	2.7e-28	58.4
WP_034166122.1\|501854_502400_-	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	3.6e-63	65.0
WP_034162745.1\|502396_502678_-\|holin	phage holin family protein	G9L6E7	Escherichia_phage	1.2e-14	49.5
WP_014526530.1\|502674_503046_-\|holin	phage holin family protein	S4TRS4	Salmonella_phage	1.9e-15	40.9
WP_014526529.1\|503244_503523_+	hypothetical protein	NA	NA	NA	NA
WP_034166109.1\|503728_504265_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.9e-24	37.2
WP_034171748.1\|504281_505325_-	DUF968 domain-containing protein	S5MW46	Escherichia_phage	2.1e-59	37.6
WP_015462004.1\|505324_505540_-	LexA repressor	U5P451	Shigella_phage	7.7e-09	46.2
WP_034166126.1\|505539_506355_-	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	4.6e-86	59.0
WP_034172590.1\|506510_506906_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	6.8e-35	57.6
WP_034166015.1\|507425_507668_-	hypothetical protein	NA	NA	NA	NA
WP_034166016.1\|507664_508570_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	8.3e-36	76.3
WP_071881874.1\|508572_508749_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_034166017.1\|508943_509483_-	hypothetical protein	NA	NA	NA	NA
WP_034166018.1\|509576_509762_-	helix-turn-helix domain-containing protein	A5VW97	Enterobacteria_phage	8.4e-12	59.0
WP_049703850.1\|509841_510492_+	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	7.1e-82	68.5

DBSCAN-SWA_4

759959 : 829789

Shigella_phage(32.14%)

transposase,protease,plate,head,holin,tail,capsid,integrase,portal,terminase,tRNA

attL 769451:769467|attR 833592:833608

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034164121.1\|759959_761345_-\|tRNA	cysteine--tRNA ligase	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	2.5e-39	31.4
WP_034164120.1\|761533_762028_+	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_034164118.1\|762036_762777_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_034164117.1\|763196_763706_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_034164115.1\|763702_764773_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_034164113.1\|764776_767179_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_034164112.1\|767175_767862_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-30	36.1
WP_071844134.1\|767829_768492_+\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_034164111.1\|768534_769320_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_034164110.1\|769386_770241_+	co-chaperone YbbN	NA	NA	NA	NA
769451:769467	attL	NA	NA	NA	NA
WP_034164108.1\|770524_771265_+	membrane protein	NA	NA	NA	NA
WP_015462165.1\|771264_771741_+	membrane protein	NA	NA	NA	NA
WP_034164107.1\|771757_772873_+	M20 family metallopeptidase	NA	NA	NA	NA
WP_005289369.1\|773040_773262_+	DUF465 domain-containing protein	NA	NA	NA	NA
WP_034164105.1\|773330_774632_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.7e-130	58.2
WP_034164104.1\|774712_776350_-	CTP synthase (glutamine hydrolyzing)	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	50.9
WP_034164103.1\|776610_777405_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_034164102.1\|777493_779740_-	GTP diphosphokinase	NA	NA	NA	NA
WP_034164101.1\|779775_781092_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.1e-36	27.9
WP_034164099.1\|781175_783935_+	two-component sensor histidine kinase BarA	A0A1V0SGX0	Hokovirus	1.1e-51	29.9
WP_034164098.1\|784108_784489_-	holo-ACP synthase	NA	NA	NA	NA
WP_034164097.1\|784488_785220_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_034164095.1\|785385_786114_-	DNA repair protein RecO	NA	NA	NA	NA
WP_012849548.1\|786122_787028_-	GTPase Era	NA	NA	NA	NA
WP_034164094.1\|787024_787705_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	4.8e-20	31.1
WP_034164093.1\|787882_788857_-	signal peptidase I	NA	NA	NA	NA
WP_034164091.1\|788930_790724_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	1.3e-21	24.5
WP_034164090.1\|791088_791442_-\|tail	tail fiber assembly protein	E7EKV7	Edwardsiella_phage	2.2e-32	58.3
WP_071881875.1\|792185_792770_-	YmfQ family protein	O22003	Shigella_phage	5.4e-97	83.5
WP_034166104.1\|792760_793819_-\|plate	baseplate J/gp47 family protein	Q8SBG4	Shigella_phage	1.3e-157	74.7
WP_071881876.1\|793805_794231_-	phage GP46 family protein	U5P0R9	Shigella_phage	3.8e-60	71.6
WP_034166138.1\|794233_794779_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	2.9e-68	69.1
WP_034166057.1\|794778_795849_-\|plate	baseplate protein	U5P0H6	Shigella_phage	7.7e-174	82.5
WP_034166058.1\|795845_797150_-	DNA circularization N-terminal domain-containing protein	Q8SBG8	Shigella_phage	6.3e-170	68.1
WP_034166056.1\|797208_797736_-	hypothetical protein	NA	NA	NA	NA
WP_000019440.1\|798764_799745_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	99.1
WP_144242790.1\|799853_800795_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	2.7e-90	61.3
WP_034166070.1\|800915_801203_-\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	7.4e-23	58.6
WP_034166071.1\|801202_801559_-\|tail	phage tail tube protein	U5P076	Shigella_phage	7.7e-54	85.6
WP_034166073.1\|801558_803055_-\|tail	phage tail sheath subtilisin-like domain-containing protein	S5FKL0	Shigella_phage	9.2e-242	84.5
WP_005288483.1\|803044_803209_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	1.4e-18	81.5
WP_034171917.1\|803217_803793_-	hypothetical protein	Q8SBH4	Shigella_phage	3.2e-86	81.6
WP_051905074.1\|803792_804251_-	hypothetical protein	Q8SBH5	Shigella_phage	8.3e-69	84.9
WP_034166081.1\|804270_804684_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	2.5e-48	74.2
WP_034166080.1\|804680_805004_-\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-31	59.6
WP_034166078.1\|805079_806288_-\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	5.1e-158	70.8
WP_034166077.1\|806297_806897_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.9e-89	79.5
WP_038631226.1\|806889_808116_-\|portal	phage portal protein	Q8SBI0	Shigella_phage	5.5e-208	85.3
WP_034166098.1\|808263_809997_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	93.5
WP_005288507.1\|809993_810488_-\|terminase	phage terminase small subunit P27 family	A0A1B3B2F4	Salmonella_phage	6.6e-80	90.2
WP_034166152.1\|810612_810963_-	HNH endonuclease	S5FKR6	Shigella_phage	7.8e-51	79.1
WP_038631236.1\|812147_812549_-	hypothetical protein	A0A192Y6H8	Salmonella_phage	6.5e-17	47.5
WP_034168845.1\|812652_813501_-	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	2.7e-28	58.4
WP_034166122.1\|813624_814170_-	glycoside hydrolase family 108 protein	A0A0U2I1S0	Escherichia_phage	3.6e-63	65.0
WP_034162745.1\|814166_814448_-\|holin	phage holin family protein	G9L6E7	Escherichia_phage	1.2e-14	49.5
WP_014526530.1\|814444_814816_-\|holin	phage holin family protein	S4TRS4	Salmonella_phage	1.9e-15	40.9
WP_014526529.1\|815014_815293_+	hypothetical protein	NA	NA	NA	NA
WP_034166109.1\|815498_816035_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.9e-24	37.2
WP_034171748.1\|816051_817095_-	DUF968 domain-containing protein	S5MW46	Escherichia_phage	2.1e-59	37.6
WP_015462004.1\|817094_817310_-	LexA repressor	U5P451	Shigella_phage	7.7e-09	46.2
WP_034166126.1\|817309_818125_-	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	4.6e-86	59.0
WP_038631239.1\|818280_818676_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	6.8e-35	57.6
WP_034166140.1\|818672_819200_-	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	1.7e-70	71.4
WP_071881879.1\|819196_819439_-	GNAT family acetyltransferase	NA	NA	NA	NA
WP_038631242.1\|819435_820173_-	DNA replication protein	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	4.6e-45	44.7
WP_051905122.1\|820169_821096_-	conserved phage C-terminal domain-containing protein	A0A1V0E8B1	Vibrio_phage	1.9e-11	45.7
WP_071881880.1\|821107_821284_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_034166046.1\|821478_822009_-	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-25	49.6
WP_034166047.1\|822065_822269_-	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	2.3e-15	59.4
WP_034166048.1\|822356_823025_+	hypothetical protein	U5P0T5	Shigella_phage	2.0e-95	73.9
WP_034166050.1\|823154_823622_+	hypothetical protein	NA	NA	NA	NA
WP_038631244.1\|824350_825289_+	recombination-associated protein RdgC	A0A1Y0SUG1	Pseudomonas_phage	2.2e-44	34.2
WP_081926393.1\|825285_825678_+	ead/Ea22-like family protein	K7PJQ4	Enterobacteria_phage	5.2e-27	71.4
WP_034165593.1\|825679_825868_+	hypothetical protein	A0A077KC30	Edwardsiella_phage	4.5e-21	85.2
WP_051905075.1\|825871_826261_+	hypothetical protein	L0MYG0	Edwardsiella_phage	7.9e-12	92.5
WP_034165592.1\|826257_826560_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	5.5e-29	60.6
WP_034165591.1\|826552_827158_+	3'-5' exoribonuclease	NA	NA	NA	NA
WP_034165590.1\|827157_827442_+	DUF4752 family protein	A0A0N7KZC7	Stx2-converting_phage	2.0e-25	55.3
WP_034165589.1\|827434_828235_+	ParB N-terminal domain-containing protein	K7PKM7	Enterobacterial_phage	1.8e-79	59.5
WP_014526505.1\|828297_828582_+	excisionase Xis	H6WRW8	Salmonella_phage	3.4e-36	75.5
WP_034165588.1\|828559_829789_-\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	6.6e-230	92.4
833592:833608	attR	NA	NA	NA	NA

DBSCAN-SWA_5

865123 : 874475

Enterobacteria_phage(83.33%)

integrase

attL 862273:862287|attR 869709:869723

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
862273:862287	attL	NA	NA	NA	NA
WP_034165561.1\|865123_866347_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	3.3e-104	48.1
WP_034165560.1\|866343_867456_+	hypothetical protein	NA	NA	NA	NA
WP_034165559.1\|867436_867772_+	STAS-like domain-containing protein	NA	NA	NA	NA
WP_045425719.1\|867911_868259_+	hypothetical protein	NA	NA	NA	NA
WP_038631249.1\|868637_869213_-	hypothetical protein	NA	NA	NA	NA
WP_071818543.1\|869227_869470_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	1.1e-19	58.3
WP_049703874.1\|869466_870219_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	2.9e-42	43.0
869709:869723	attR	NA	NA	NA	NA
WP_034165550.1\|870770_871037_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.2e-30	72.7
WP_034165548.1\|871033_871585_+	ash family protein	Q7M2A7	Enterobacteria_phage	5.9e-37	75.9
WP_034165547.1\|871581_871809_+	hypothetical protein	NA	NA	NA	NA
WP_034165546.1\|871805_872126_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_034165544.1\|872141_874475_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.6

DBSCAN-SWA_6

1046835 : 1061454

uncultured_Mediterranean_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034164630.1\|1046835_1048416_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-09	32.4
WP_034164631.1\|1048916_1049234_+	acid-activated periplasmic chaperone HdeB	NA	NA	NA	NA
WP_034164633.1\|1049357_1050026_+	transcriptional regulator	NA	NA	NA	NA
WP_034164634.1\|1050179_1052738_+	DNA mismatch repair protein MutS	A0A2I2L537	Orpheovirus	2.2e-25	31.5
WP_034164635.1\|1052792_1053779_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.0e-31	36.2
WP_081854110.1\|1053830_1054763_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	2.9e-07	35.6
WP_034164638.1\|1055091_1055730_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-37	52.4
WP_034164639.1\|1055723_1056488_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-67	53.4
WP_034164641.1\|1056468_1057515_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_034164642.1\|1057518_1057992_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_034164740.1\|1057995_1058727_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_034164643.1\|1058780_1059125_-	cell division protein FtsB	NA	NA	NA	NA
WP_034164644.1\|1059207_1061454_-	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	9.3e-12	26.2

DBSCAN-SWA_7

1810893 : 1816235

Xanthomonas_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034164493.1\|1810893_1811352_-	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	4.6e-51	63.5
WP_034164494.1\|1811329_1812547_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.6e-42	33.1
WP_034164495.1\|1812736_1813423_+	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	5.7e-21	29.8
WP_015460658.1\|1813661_1813898_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_005290066.1\|1813909_1814077_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_034164496.1\|1814170_1814980_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	1.1e-26	33.0
WP_034164497.1\|1814976_1815462_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.2e-27	43.4
WP_034164498.1\|1815458_1816235_-	glycosyltransferase family 2 protein	S5WBE2	Pseudomonas_phage	4.9e-05	32.1

DBSCAN-SWA_8

2658273 : 2663654

Enterobacteria_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071881907.1\|2658273_2658516_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	3.8e-20	59.5
WP_049703718.1\|2658512_2659265_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	4.4e-43	42.6
WP_034166061.1\|2659826_2660093_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.5e-30	70.5
WP_071881908.1\|2660089_2660641_+	ash family protein	Q7M2A7	Enterobacteria_phage	8.0e-34	68.5
WP_034166062.1\|2660637_2660865_+	hypothetical protein	NA	NA	NA	NA
WP_034166063.1\|2660861_2661182_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_174434934.1\|2662324_2662636_+	hypothetical protein	Q6QLL3	Human_immunodeficiency_virus	1.3e-12	97.2
WP_000019440.1\|2662673_2663654_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	6.8e-185	99.1

DBSCAN-SWA_9

2842924 : 2876661

Shigella_phage(67.65%)

transposase,protease,head,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034171767.1\|2842924_2843638_-	hypothetical protein	A0A0C4UQZ7	Shigella_phage	2.6e-101	78.2
WP_071881913.1\|2843585_2843801_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_034171766.1\|2843978_2844533_-	recombinase family protein	A0A0C4UR34	Shigella_phage	4.5e-69	75.7
WP_144242823.1\|2844581_2845322_+	hypothetical protein	NA	NA	NA	NA
WP_081926423.1\|2845222_2845669_+\|tail	tail fiber assembly protein	E7EKV7	Edwardsiella_phage	1.8e-28	54.7
WP_034171951.1\|2845700_2846228_-\|tail	tail fiber assembly protein	A0A0A7NRZ7	Enterobacteria_phage	1.9e-32	42.4
WP_095666580.1\|2846227_2846710_-\|tail	phage tail protein	A0A222YYI1	Escherichia_phage	3.8e-40	49.1
WP_034171756.1\|2847358_2847904_-	YmfQ family protein	C9DGQ7	Escherichia_phage	4.5e-45	50.3
WP_034163784.1\|2847894_2848977_-\|plate	baseplate J/gp47 family protein	A0A0C4UQU9	Shigella_phage	1.3e-104	53.5
WP_051905128.1\|2848977_2849367_-	phage GP46 family protein	A0A0C4UR04	Shigella_phage	6.2e-41	65.4
WP_034163783.1\|2849408_2850008_-\|plate	phage baseplate assembly protein V	A0A0C4UQZ3	Shigella_phage	5.6e-57	56.1
WP_034163782.1\|2850000_2851122_-\|tail	tail protein	A0A0C4UQS1	Shigella_phage	4.7e-97	49.2
WP_081926424.1\|2851111_2852518_-	DNA circularization protein	A0A0C4UR32	Shigella_phage	2.7e-57	33.3
WP_034163780.1\|2852523_2854653_-	tape measure protein	A0A0C4UQU8	Shigella_phage	7.0e-86	43.7
WP_095666581.1\|2854776_2855181_-\|tail	phage tail assembly protein	A0A0C4UR03	Shigella_phage	5.1e-30	55.3
WP_034163779.1\|2855255_2855612_-\|tail	phage tail tube protein	A0A0C4UQZ1	Shigella_phage	2.0e-25	53.0
WP_034163778.1\|2855621_2857127_-\|tail	phage tail sheath subtilisin-like domain-containing protein	C9DGP7	Escherichia_phage	1.7e-147	56.7
WP_034163777.1\|2857123_2857381_-	DUF2635 domain-containing protein	A0A0C4UR31	Shigella_phage	1.1e-09	46.5
WP_034163775.1\|2857370_2857916_-	DUF1834 family protein	A0A0C4UQU7	Shigella_phage	1.0e-44	48.3
WP_034163774.1\|2857915_2858335_-	DUF1320 family protein	A0A0C4UR02	Shigella_phage	1.2e-29	50.0
WP_071881914.1\|2858331_2858799_-	hypothetical protein	A0A0C4UQZ0	Shigella_phage	5.8e-17	47.8
WP_034163773.1\|2858860_2859808_-\|head	Mu-like prophage major head subunit gpT family protein	C9DGP2	Escherichia_phage	7.9e-122	66.2
WP_034163771.1\|2859807_2860932_-\|protease	protease	A0A0C4UQU6	Shigella_phage	2.5e-82	47.6
WP_034163770.1\|2861076_2861430_+	hypothetical protein	NA	NA	NA	NA
WP_034163769.1\|2861608_2862088_-	phage virion morphogenesis protein	A0A0C4UR01	Shigella_phage	1.5e-44	59.7
WP_034163768.1\|2862212_2863541_-\|head	phage head morphogenesis protein	A0A0C4UQY9	Shigella_phage	2.3e-172	67.0
WP_034163766.1\|2863524_2865072_-	DUF935 domain-containing protein	A0A0C4UQR8	Shigella_phage	2.2e-190	64.8
WP_034163764.1\|2865071_2866736_-	hypothetical protein	A0A0C4UR29	Shigella_phage	9.9e-261	80.8
WP_034163763.1\|2866741_2867326_-	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	7.1e-65	70.6
WP_034163762.1\|2867336_2867627_-	hypothetical protein	A0A0C4UR00	Shigella_phage	4.2e-26	63.5
WP_034163761.1\|2867626_2867929_-	DUF2730 family protein	NA	NA	NA	NA
WP_034163759.1\|2867921_2868137_-	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_081926458.1\|2868139_2868343_-	hypothetical protein	NA	NA	NA	NA
WP_144242824.1\|2868305_2868683_-	hypothetical protein	NA	NA	NA	NA
WP_034163756.1\|2868747_2869251_-	lysozyme	B6SD42	Bacteriophage	9.9e-31	45.3
WP_051905130.1\|2869375_2869795_-	hypothetical protein	NA	NA	NA	NA
WP_034163754.1\|2869877_2870396_-	regulatory protein GemA	M4MB83	Vibrio_phage	4.3e-29	43.9
WP_034163753.1\|2870454_2870868_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_144242825.1\|2870829_2871093_-	hypothetical protein	NA	NA	NA	NA
WP_144242826.1\|2871085_2871301_-	hypothetical protein	NA	NA	NA	NA
WP_034163751.1\|2871963_2872488_-	host-nuclease inhibitor Gam family protein	A0A0C4UQY5	Shigella_phage	1.2e-60	68.4
WP_034163749.1\|2872462_2872765_-	hypothetical protein	NA	NA	NA	NA
WP_034163747.1\|2872859_2873114_-	hypothetical protein	A0A0U5KSG7	unidentified_phage	1.5e-14	50.0
WP_034163745.1\|2873349_2874288_-	AAA family ATPase	A0A0C4UQR3	Shigella_phage	9.6e-96	59.5
WP_034163743.1\|2874355_2876425_-\|transposase	Mu transposase C-terminal domain-containing protein	A0A2D1GNK9	Pseudomonas_phage	1.0e-174	50.6
WP_034163742.1\|2876427_2876661_-	helix-turn-helix domain-containing protein	A0A2D1GNH1	Pseudomonas_phage	3.0e-14	48.7

DBSCAN-SWA_10

3863781 : 3873727

Bacillus_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_045427908.1\|3863781_3864270_-	C40 family peptidase	S5MM68	Bacillus_phage	4.9e-11	38.5
WP_081854135.1\|3864413_3865181_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	1.5e-06	27.4
WP_034163367.1\|3865170_3866205_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_034163366.1\|3866185_3866389_-	protein DsrB	NA	NA	NA	NA
WP_005285818.1\|3866479_3866776_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	2.4e-13	41.1
WP_034163365.1\|3866780_3869168_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	2.1e-06	25.8
WP_034163364.1\|3869182_3870166_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	6.4e-34	42.6
WP_106120997.1\|3870351_3870396_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_015461533.1\|3870558_3870915_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_005293643.1\|3870958_3871156_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_034163363.1\|3871252_3871795_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	7.4e-16	34.1
WP_034163362.1\|3871798_3873727_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.5e-127	37.3

DBSCAN-SWA_11

4115736 : 4187147

Enterobacteria_phage(11.43%)

head,plate,holin,capsid,tail,lysis,integrase,portal,terminase

attL 4181256:4181269|attR 4187475:4187488

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_034165887.1\|4115736_4116216_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_174434962.1\|4116215_4116722_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_034165885.1\|4116738_4117824_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_034165884.1\|4117787_4119542_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_034165883.1\|4120788_4122390_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_034165882.1\|4122389_4125857_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_034165881.1\|4125853_4127062_-	hypothetical protein	NA	NA	NA	NA
WP_144242841.1\|4127046_4127319_-	hypothetical protein	NA	NA	NA	NA
WP_038631656.1\|4127405_4129757_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	9.7e-20	32.6
WP_038631659.1\|4129753_4132417_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	6.7e-94	32.4
WP_038631662.1\|4132594_4133086_-	type VI secretion system effector Hcp	NA	NA	NA	NA
WP_038631664.1\|4133091_4134822_-	OmpA family protein	NA	NA	NA	NA
WP_034166038.1\|4134818_4135508_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_038631667.1\|4135504_4136845_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_038631670.1\|4136862_4138410_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_034171959.1\|4138443_4138941_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_174434940.1\|4139454_4139667_-	hypothetical protein	NA	NA	NA	NA
WP_071881934.1\|4140391_4140544_+	Hok/Gef family protein	NA	NA	NA	NA
WP_158407655.1\|4141183_4142263_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	1.6e-30	32.7
WP_034165338.1\|4142300_4142828_-\|tail	tail fiber assembly protein	U5N0T1	Enterobacteria_phage	1.0e-25	37.8
WP_051905111.1\|4142830_4143754_-	hypothetical protein	A0A077SK37	Escherichia_phage	1.1e-16	49.6
WP_034165337.1\|4143810_4144404_-	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	4.0e-31	36.2
WP_034165336.1\|4144400_4145543_-\|plate	baseplate J/gp47 family protein	B5TAA9	Burkholderia_phage	8.3e-25	28.0
WP_034165335.1\|4145544_4145982_-	phage GP46 family protein	A0A0C4UR04	Shigella_phage	2.3e-15	42.0
WP_095666569.1\|4145978_4146521_-\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_034165332.1\|4146559_4147645_-\|tail	tail protein	M1PVV2	Vibrio_phage	6.8e-45	32.7
WP_034165331.1\|4147641_4149042_-	DNA circularization protein	NA	NA	NA	NA
WP_034165330.1\|4149221_4151027_-	transglycosylase SLT domain-containing protein	I6ZXX9	Escherichia_phage	3.9e-29	47.7
WP_034165329.1\|4151168_4151447_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_034165328.1\|4151448_4151820_-\|tail	phage tail tube protein	NA	NA	NA	NA
WP_034165327.1\|4151823_4153326_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	6.5e-102	43.1
WP_071881935.1\|4153322_4153514_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_034165326.1\|4153517_4154063_-	hypothetical protein	NA	NA	NA	NA
WP_034165325.1\|4154059_4154419_-	hypothetical protein	NA	NA	NA	NA
WP_034165324.1\|4154423_4154792_-	hypothetical protein	NA	NA	NA	NA
WP_034165323.1\|4154763_4155813_-\|capsid	major capsid protein	V5Q8G6	Xylella_phage	6.2e-51	33.7
WP_034165321.1\|4155943_4156348_-\|head	head decoration protein	NA	NA	NA	NA
WP_034165319.1\|4156347_4156929_-	hypothetical protein	NA	NA	NA	NA
WP_034165318.1\|4156930_4157800_-	S49 family peptidase	K4I1N3	Providencia_phage	1.2e-52	39.7
WP_034165316.1\|4157796_4159434_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	2.1e-93	36.5
WP_034165315.1\|4159433_4159697_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
WP_034165314.1\|4159705_4161835_-\|terminase	phage terminase large subunit family protein	A0A2K9V3X4	Faecalibacterium_phage	8.6e-100	36.1
WP_034165313.1\|4161776_4162358_-	hypothetical protein	NA	NA	NA	NA
WP_034165312.1\|4162600_4163239_-	hypothetical protein	NA	NA	NA	NA
WP_034165311.1\|4163241_4163436_-	hypothetical protein	NA	NA	NA	NA
WP_034165310.1\|4164097_4164298_-	hypothetical protein	NA	NA	NA	NA
WP_095666570.1\|4164334_4164820_-\|lysis	lysis protein	A0A2D1GLQ7	Escherichia_phage	1.9e-47	67.6
WP_034165308.1\|4164816_4165293_-	glycoside hydrolase family 104 protein	K7P890	Enterobacteria_phage	3.6e-75	84.7
WP_034165307.1\|4165296_4165617_-\|holin	phage holin, lambda family	Q2A0C6	Sodalis_phage	7.7e-13	34.3
WP_034165306.1\|4166210_4167074_+	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	1.8e-40	40.6
WP_034165351.1\|4167310_4168081_-	antitermination protein	Q76H66	Enterobacteria_phage	3.5e-67	50.0
WP_081926446.1\|4168100_4168499_-	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	2.2e-33	59.5
WP_034165305.1\|4168733_4169468_-	DNA replication protein	A0A1P8DTF3	Proteus_phage	1.8e-33	39.2
WP_034165304.1\|4169464_4170508_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.1e-71	56.1
WP_081926460.1\|4170500_4171391_-	Rha family phage regulatory protein	A0A1C9IHV9	Salmonella_phage	5.4e-80	57.7
WP_015461732.1\|4171370_4171643_+	BrnT family toxin	K4NX81	Burkholderia_phage	5.0e-29	68.9
WP_034165303.1\|4171602_4171887_+	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	7.8e-17	54.4
WP_034165347.1\|4171933_4172113_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_034165302.1\|4172304_4172832_-	hypothetical protein	K7PJS5	Enterobacterial_phage	2.1e-23	48.7
WP_034165301.1\|4172851_4173058_-	hypothetical protein	NA	NA	NA	NA
WP_071881937.1\|4173148_4173799_+	LexA family transcriptional regulator	A0A0M4QWY1	Salmonella_phage	7.2e-34	38.9
WP_158407656.1\|4174725_4177551_+	hypothetical protein	NA	NA	NA	NA
WP_034165299.1\|4178031_4179705_-	hypothetical protein	NA	NA	NA	NA
WP_034165298.1\|4180209_4180497_+	hypothetical protein	I6PDF6	Cronobacter_phage	3.3e-07	52.2
WP_034165297.1\|4180475_4180766_-	hypothetical protein	NA	NA	NA	NA
WP_034165296.1\|4180915_4181386_-	hypothetical protein	NA	NA	NA	NA
4181256:4181269	attL	NA	NA	NA	NA
WP_034165295.1\|4181632_4181833_+	hypothetical protein	NA	NA	NA	NA
WP_081926447.1\|4181829_4182219_+	ead/Ea22-like family protein	K7PJQ4	Enterobacteria_phage	1.9e-26	64.9
WP_034165294.1\|4182279_4182468_+	hypothetical protein	A0A077KC30	Edwardsiella_phage	2.2e-20	86.9
WP_034165292.1\|4183061_4183433_+	hypothetical protein	NA	NA	NA	NA
WP_034165291.1\|4183425_4183761_+	hypothetical protein	NA	NA	NA	NA
WP_034165290.1\|4183760_4184591_+	hypothetical protein	K7PKM7	Enterobacterial_phage	1.8e-66	53.2
WP_034165343.1\|4184620_4184845_+	DUF4224 domain-containing protein	K7PHA0	Enterobacterial_phage	1.0e-08	46.3
WP_034165289.1\|4184844_4185855_+\|integrase	tyrosine-type recombinase/integrase	K7PLZ2	Enterobacterial_phage	2.6e-123	62.8
WP_034165288.1\|4186109_4187147_-\|integrase	tyrosine-type recombinase/integrase	P79671	Haemophilus_phage	5.1e-98	54.9
4187475:4187488	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP006664.1|WP_071881879.1|819196_819439_-|GNAT-family-acetyltransferase

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP006664.1|WP_071881879.1|819196_819439_-|GNAT-family-acetyltransferase

819196_819439_-

80 aa aa

759959-829789

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP006664_4	Orphan	4.1\|3649688\|33\|NZ_CP006664\|CRISPRCasFinder,CRT	3649688-3649720	33	820168-820200	0

1. spacer 4.1|3649688|33|NZ_CP006664|CRISPRCasFinder,CRT matches to NZ_CP006664 position: 820168-820200, mismatch: 0

tttcatagcgtactctcccaaccttccgggcta	CRISPR spacer
tttcatagcgtactctcccaaccttccgggcta	Protospacer
*********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP006665

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP006664

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information