CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_017999	Bifidobacterium bifidum BGN4, complete sequence	1 crisprs	cas3,WYL,DEDDh,csa3	0	0	0	0

Cas Category Instructions

Results visualization

1. NC_017999

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CRISPR-Cas detection and classification

Crispr_ID: NC_017999_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_017999_1

1798234-1798355

Orphan

Consensus_repeat	Method
CGTCACTGTGTGCGTGGACGCACAGCGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_017999_1

>merge|NC_017999|1|1798234-1798355|CRISPRCasFinder
CGTCACTGTGTGCGGGCGCCGTCACTGTGTGCGTGGACGCACAGCGTGACGCATACCCCAAAACCCTTGGAAAATAAGGATTTCTGGCATTGCGTCACTGTGTGCGTGGACGCACAGCGTGA

>NC_017999|1|1|1798234-1798355|CRISPRCasFinder
CGTCACTGTGTGCGGGCGCCGTCACTGTGT	GCGTGGACGCACAGCGTGACGCATACCCCAAAACCCTTGGAAAATAAGGATTTCTGGCATTG
CGTCACTGTGTGCGTGGACGCACAGCGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_017999.1\|WP_003815687.1\|1803780_1804809_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NC_017999.1\|WP_003817718.1\|1794582_1795212_-\|hypothetical-protein	unknown	unknown	unknown
NC_017999.1\|WP_013390214.1\|1800604_1803571_-\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NC_017999.1\|WP_014760608.1\|1795297_1796698_+\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NC_017999.1\|WP_003817716.1\|1794368_1794458_-\|AURKAIP1/COX24-domain-containing-protein	unknown	unknown	unknown
NC_017999.1\|WP_014760609.1\|1796839_1798099_-\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	unknown	unknown	gnl\|CDD\|235536
NC_017999.1\|WP_014760605.1\|1784623_1786048_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180907
NC_017999.1\|WP_003814603.1\|1799713_1800298_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NC_017999.1\|WP_013390211.1\|1792273_1793353_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|260010
NC_017999.1\|WP_041777801.1\|1810756_1811659_-\|tRNA-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|211337
NC_017999.1\|WP_003814612.1\|1793502_1794201_+\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_017999.1\|WP_100219091.1\|1781854_1782055_-\|hypothetical-protein	unknown	unknown	unknown
NC_017999.1\|WP_003814594.1\|1807465_1808266_-\|transglutaminase-family-protein	unknown	unknown	gnl\|CDD\|224224
NC_017999.1\|WP_041777732.1\|1811933_1816754_+\|discoidin-domain-containing-protein	unknown	unknown	gnl\|CDD\|119334
NC_017999.1\|WP_014760611.1\|1804883_1805858_+\|hypothetical-protein	unknown	unknown	unknown
NC_017999.1\|WP_041777731.1\|1786160_1792043_-\|beta-N-acetylglucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369423
NC_017999.1\|WP_187287767.1\|1798378_1799605_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NC_017999.1\|WP_003822766.1\|1808387_1810571_-\|circularly-permuted-type-2-ATP-grasp-protein	unknown	unknown	gnl\|CDD\|379601
NC_017999.1\|WP_003814585.1\|1817150_1817663_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NC_017999.1\|WP_014760604.1\|1782566_1784243_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|100094

Protein	Function_ID	Function_description	E-value
NC_017999.1\|WP_003815687.1\|1803780_1804809_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	1.82898e-152
NC_017999.1\|WP_041777801.1\|1810756_1811659_-\|tRNA-pseudouridine-synthase-A	gnl\|CDD\|211337	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.	1.63533e-92
NC_017999.1\|WP_014760608.1\|1795297_1796698_+\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NC_017999.1\|WP_014760609.1\|1796839_1798099_-\|bifunctional-riboflavin-kinase/FMN-adenylyltransferase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.57388e-73
NC_017999.1\|WP_014760605.1\|1784623_1786048_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|180907	PRK07251, PRK07251, FAD-containing oxidoreductase.	3.02679e-158
NC_017999.1\|WP_003814603.1\|1799713_1800298_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.65448e-40
NC_017999.1\|WP_013390211.1\|1792273_1793353_+\|ribonuclease-HI	gnl\|CDD\|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	3.60416e-57
NC_017999.1\|WP_003814612.1\|1793502_1794201_+\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	5.09209e-120
NC_017999.1\|WP_014760604.1\|1782566_1784243_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|100094	cd05801, PGM_like3, This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_017999.1\|WP_003814594.1\|1807465_1808266_-\|transglutaminase-family-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	4.25788e-27
NC_017999.1\|WP_041777732.1\|1811933_1816754_+\|discoidin-domain-containing-protein	gnl\|CDD\|119334	cd06564, GH20_DspB_LnbB-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	1.25923e-112
NC_017999.1\|WP_041777731.1\|1786160_1792043_-\|beta-N-acetylglucosaminidase-domain-containing-protein	gnl\|CDD\|369423	pfam07555, NAGidase, beta-N-acetylglucosaminidase. This family has previously been described as a hyaluronidase. However, more recently it has been shown that this family has beta-N-acetylglucosaminidase activity.	7.59121e-114
NC_017999.1\|WP_187287767.1\|1798378_1799605_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	6.09705e-100
NC_017999.1\|WP_003822766.1\|1808387_1810571_-\|circularly-permuted-type-2-ATP-grasp-protein	gnl\|CDD\|379601	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2. Circularly permuted ATP-grasp prototyped by Roseiflexus RoseRS_2616 that is associated in gene neighborhoods with a GCS2-like COOH-NH2 ligase, alpha/beta hydrolase fold peptidase, GAT-II -like amidohydrolase, and M20 peptidase. Members of this family are predicted to be involved in the biosynthesis of small peptides.	0
NC_017999.1\|WP_003814585.1\|1817150_1817663_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	4.10887e-57
NC_017999.1\|WP_013390214.1\|1800604_1803571_-\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0

>NC_017999.1|WP_014760609.1|1796839_1798099_-|bifunctional-riboflavin-kinase/FMN-adenylyltransferase
MKITILAPDASGLVEWPTLSANRKSVVTVGVFDGMHRGHQAVIRRAVELAKADKAFSVVVMFDPRPGVVHAYAAAHDGQEPGDGFCDPMALTSVDQRLRTLENLGVDHVLIVRYTLAFATKSYRFFLGQMVGKLGMRTLVLGTDAAMGANRAGDVKAIGVLAQATGVFELEIVDDRGPGHVRVPADVTPQMPSEPGEPVDPTEGMTKAQLRAWSKKHQGREVRVWSSTNVRYLLAHGRIKAADEILGHAHAIEGTVVHGEERGRTIGFPTANLGSMIDGYIPVDGVYAGWLIDLGAAGATADSDENASDGNSGSGNASVIPRVYDSGSSKARLAAESPYRWPAAISIGTKPTFNEETGLNERVVEAYAVTDEWLDLYGHDVRVEFAGFLRPQVKFDSADALKDELTRNVQETRELTSAR
>NC_017999.1|WP_014760608.1|1795297_1796698_+|DNA-repair-protein-RadA
MVKSATRYVCSECGWDGLKWVGRCPQCGQWGTVEEFHEARPAASSSRTAAPGRTSRTQAAVSIVSAATPITQIDTSTASRLSTGFGEFDRVLGGGIVPGSVVLIAGEPGIGKSTLLLETAGNIAAGQPNGSVLYVSGEESQAQVRLRASRVNAMEQNLLLASTTDLATVLGLIERTRPTLAIVDSAQTIVSQDVDGISGGSTQVREVASALIDTAKTLNIPVLLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDPETALRMLRAVKNRFGPTDEVGCFDMSGEGIEEVSDPSGLFLSSADERVEGTCVTFTLDGHRSLPIEIQALVTSSVLPTPRRAVVGVETNRIAMLTAVLYRHGKVNLLANDLYVSTIAGGLAKEPACDLAIVAALASAARSKPIARDTCAIGEISLTGQIRPVPRLEHRLREAARLGFATAVVPPMRKRVTIEGLRIVEVTHLRDALESLGVV
>NC_017999.1|WP_003817718.1|1794582_1795212_-|hypothetical-protein
MAKTQSPSYPHGSSASRGKLIVVMIVAALVVVLALLSAFVWPGWALNKTDEVTKVQQQTAAEPTKPSIKATALPDDASELLKAMPDSVLNYARTKAGASETWKSASPLEEYTLTYSTGKSAKDVTVIVAQWSDSDTVKKQYDELAKNLTGKELKSGDVKVSGKSTGSYTVRADSKDGKTATALWQNDTAVFEVTGSKESVLRFYEPFPL
>NC_017999.1|WP_003817716.1|1794368_1794458_-|AURKAIP1/COX24-domain-containing-protein
MGSVIKKRRKRMSKKKHRKMLRKTRHQRK
>NC_017999.1|WP_003814612.1|1793502_1794201_+|ribose-5-phosphate-isomerase-RpiA
MDKAQQDALKKAAGIEAAKLIENGMIAGLGTGSTVRFLVDELGRRVKEEGLQFTGVTTSRRTQEQAEGYGIKIVDIDDVDHIDITIDGADEVDKNFNGIKGGGAALLWEKIVATNSNKIVWIVDESKVVDTIGKFPLPVEVIPFGAGHVIKQFEAKNYKPVLRLDADGKEVRTDENNFVVDLHLERIDHPQDLAEDLINTVGVVEHGLFLNMVDKVIVGDPNGPRVMTNGNK
>NC_017999.1|WP_013390211.1|1792273_1793353_+|ribonuclease-HI
MTITVSTDGSALGNPNGPMGWAWADHELNMAHSGGHEHGGDCDAGGATNGTNQIGELCAVLEALRAHPGAEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALIRAIDAELSRRAGSVKFVWVKGHAGNAGNEKVDDLARTYAGDCRSGVQEGYLPKEGWQSLLASEYAKGTDVPEDAQMLLDGKISTQEYHLGRGGESGEAGAEHESDGDNVAKRIRKPSLAELLAEPEGVPDYGETQSDTSSTTAMSTPTVPMTTESDATVALSSNSAQAEDTQSGSSTRSVAEPAAPRLSPTALTASGTLRFTPPPSTSPTYDGRPRIIHGLVRVDGYVNGDGTITLNNAAFYTDKQG
>NC_017999.1|WP_041777731.1|1786160_1792043_-|beta-N-acetylglucosaminidase-domain-containing-protein
MRSKALGGLLAAALSLSPAVAIGVQTAYAAGGDTAATEYTLYPKPHSIRYDSGQYILRDINVIYDDDIDEATQDRLDEVAALKNLNVTESDAAVSGKTNVYVGVNGSDGKAETAIESKYSPDSAIFDKTDSYFLKSDNGTISVLGKDTDASFYGLTTLYQVLGQIDSLTIRNFTVTDYADVVSRGFIEGYYGNPWSTQDRINLMKWGGYYKLNSYFYAPKDDPKHNSQWRTLYTQDELDTKIKPLADAGNASKTRFVFALHPFMNNAIRFNSEANYQADLKVLQDKFAQTIGVGVRQIAILADDAANVGGNNYTKLLTDMVAWLKEMKKTYPDLKTTLPFVTQEYMGNGMSYFANFPKEVQIVMTGGRVWGEVSQNFTDTFTSNVGRGPYMWINWPCSDNSKSHLIMGGYDTFLHPGVDPSKIQGIVLNPMQQSEPSKVGIFGNATYSWNIWRSKSEADQAWQDSFSFVDHNSAVPTAASNALRELSKHTINQNMDSRVTALQESVDLAPALTAAKAKLADGTITAHDLTDIKAAFVTLQKAAKTYRAKGDAKMLGDIGKDYTGQDANEQIAPWIDCWDDTTKAALAYIAGIEAALNGDTSSTLKEYSDAQSAFAASKKHGFYYVNHIEYAEVGVQHIVPFIKAMDSYLSNKVQQEADPNVVTKTYISDVFTTPTSGSIEDIFDGKDSTVTVFQNPNYLHKGNYVGVKFSKASTLKSIRFAFNGGKNHFYHSKLQTTTDGENWTDVPDATFERPKGSEEPIKVTGLNITGVTGVRLIATADNGDDLWLGIKGIDVNKVEKETLAPYTATGVQLENLNATYSSTKEQMIDGNPSTITYLKDPNGDKIAAGAAVIVDLGSSKPIGEVTITGHASSPDDRPSQGVVEVSDDKATWTKLGDLRDDVTSTVSGNVTGRYVRIRNTAAKNVWWRVAEITVTPPETADPLKSVYTNKTQHGYTATLGANTAELFDKSHTMLDGGQYAGLDLLAIRDLTDVELNTGNANPSLQISDNGLVWTTVEPGNLTGKTARYVRVINGTDGVAFSVNKLKVGFSTVGKFGKLVSSDIQKRNDWGTDTRESGNAFDGDMTTVIKFAGQPRQGNTAVFDLGQPIDITSLRIYTQDTQYDYIRDTKVQMSVDGKTWVDAFEIGDGVSDTDTTTAFGDISDTNKKTDSNYPNVFYYGKDDIANGTGMRYLRLLTTADYPQRALAFNEFMVNQGAYVSTEANAAFSATKVEERGHAPSNMIDGDLTTTYKPSAANGSLTYKIDDPSDIKSFRIVQSGAASGATVTGTLYDAATGTTAGVTARAAARSASEVTFGTLEQAINEFKVPDGKQLLSVKIAWGDAIPEISEFITLDSADTDADITTAKAALKAKIDATVDTSAWTANAKTAYDEAKATAQAVYGSPLVGKASIDAAASAVQSAIDAAQTKADAAAVAALRKLVDEAVTNDGHFYTTVTFTAYTDALDEVKEALKDTTNLSTADAASLKKAVEDALAALKDSTYQRELATIAIDSFATIDEADYTTNSYAAFKAAKKALDTLIATDGTKPAAFKTKTAEYTTAKTALVNVAALKAQIAHESNYVEANYTADSWKAYSDALKAAKAKLVNGTTDSVAAALTALTAAENALVRTTTPPDTTVLDETIADMEKVNGSEYTTDSYKALTDAIAKAKSDKVKGDAGLNQQNIDAMKAAKEALVSTVELKAKVAEAGKVDSSKYTTASYEALSKLLAAKDDTTSDPVVKGLDTLYKSGTVKELAERVAAIDAAVAKLDARATGIKDYVDGIKLKDNDKGYYTDASYKAYSDAYKALKKLAAAGEGEVGIAEFTEAKEAFEAAEAKLAYKSADYGKIDDLLAKVPSDLSGYTADSVAKFEAAKKAVKRGLTIDQQSKVDAMADALEAAIKGLTLKSQAPGDNKGDGTQSGTHKGDDISKTGADVQVFAIIIALATCAGLGAVAYARRRREV
>NC_017999.1|WP_014760605.1|1784623_1786048_+|FAD-dependent-oxidoreductase
MTSTSSTDVPSAISADALIIGFGKGGKTLAAKLASTGRTVIVAEASADMYGGTCINIGCLPSKSLILSADRARREGANRTAETREAAFEAAIREKRRITAMLRDRNYHKLADQDNITVITGRARFTGAHSAEITTADGPVAVAADMMFINTGATPHIPDIPGIRTTPGVYTSTGLMDVDELPQRLVIIGAGFIGLEFASMFADFGTAVTVLQHSDEFLPREDEDVAAAIRAQLESQGVRFLFGADTKAITSADDGIRLSVSMRGTSDVGSEARLCLSTDAVLVATGRTPNVEGLNLEAAGVELTERGAVKVDDLLRTTADGIWALGDVNGGPQHTYISLDDYRVVWSQLNGSARPYTLSDRRNVPSSTFLHTPYSRVGLNEREAKAAGLDYVVKRLPVATVPKAQVMRRPEGMMKALVENGTDRILGAMLLAAESHEVINIVKLAMDMGAPASTLRDMMFTHPTMAEALNDLFA
>NC_017999.1|WP_014760604.1|1782566_1784243_+|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MVANNAGKPATPADLINVDEVIGKYYDLVPDPAVPEQRVIFGTSGHRGSSLKTSFNEAHIVAITQAIAEYRKKAGVTGPLYLGRDTHALSSPAEKTAIEVLVANGVHVRVDSRGDFVPTPVVSQAILTHNRAADGTQRFEGEGLADGIVVTPSHNPPTDGGFKYDPVTGGPAPAETTNAIAARANELLGDFKSIKRVPYEEAIKSEYVEGFDFREHYVADLGNVIDFDVIRDSGVRLGIDPLGGASVNYWPLINEKYGLNIGVVRPEVDPTWRFMTIDHDGKIRMDPSSPYAMKGLVDQLNAGAWDKYDLVGGTDPDADRHGIVCPNWGVMNPNHYIAVCVEYLFGGNRPGWPEGTGIGKTLVSSSLIDRVASSINAKLVEVPVGFKWFVDPLFSGEVAFGGEESSGMSFLRRDGRVWTTDKDGLIPDLLAAEITAKTGKNPAQLHQDQVARFGESWYKRVDTPTTLEQKAKFAKLTGDDVAATQLAGEDITAKLTEAPGNHAKIGGLKVTTKDNWFAARPSGTENIYKVYAESFVSPEALDKVLDEAKLVVDKALGE
>NC_017999.1|WP_100219091.1|1781854_1782055_-|hypothetical-protein
MEMARQRRSVLAIDADMPTAWGIKGAWNRREVDGLAFAAKRAAITMAPVVEPVFASVFTASAEGAT
>NC_017999.1|WP_187287767.1|1798378_1799605_-|tRNA-pseudouridine(55)-synthase-TruB
MAGSAAPATPTSGLLVVDKPRGVTSHDIVAAARGALHMKKVGHAGTLDPMATGVLVVGFGNATRLLNHIVEHDKTYEATIRLGQSTTTDDADGELLSATSPERWQELLALPVAGGPQSAGENGPANAAKGSAVAAAKVADDGSAYHPYQEAFLPDCQQLWRDRIDDIIALQLTGSIEQVPNTFSAIKINGQRAYDLARDGKDVQLKARRITVSAFGVLDVRFGYAPTRQLGLPLVSAADGLATTERDDAEATPVIDVDVRVSCSAGTYIRALGRDLGAALGVGGHLIRLRRTRVGGFDVSSPNVITAHVETREYTDRNGNHQSRNRAVLDVIGGELAGKALTMLDAARGTMPLLAITDQDAVNLRYGRRIPYDIHGTAAAYLPQSGEVVALVERAKRGEAKPATVFGA
>NC_017999.1|WP_003814603.1|1799713_1800298_-|30S-ribosome-binding-factor-RbfA
MAGTNPRAARVAALIQRVIASSMEAQLHDKRLASVTITDVRVTNDLQIAKVYWTQLGHDGREQGERKRAKQALDQAKGRLRSLVGSKAGLRLTPQLQFIYDEVPSEAHEIEDILAVAHKRDEEIAKARETAQYAGDADPYKHPEERDDDEFDDDDEYDEYADDLDDDDVEGNGIGVETLEDDAENAADEATGDR
>NC_017999.1|WP_013390214.1|1800604_1803571_-|translation-initiation-factor-IF-2
MAKKRVYELAKDFGVDSKTVLDKLKDMGEFVKSASSTVEAPVARKLKNAFQKGEAKPGASAAERKTPAPAPSEHRAPAVKPAPVAKPGLGKKPAAAPRPAEPRSAAPAAHVPSSNRGTTPRDNRNESRGDMRDARPNREGGENRPSPAQRHNPHAPSGQRGAFPGPRSHQPGHGGNAGGRPQDSRGGSHQGQPRQGQQPGAGSAPSANGGARPSTPGPRPGNNPFSRKQGMHAPTPRDIPRPHPMARPTVNGNHNDNRGGRGGRPGAGQGGRGGFRGGRPGQGAQGAKPGQWGHNRPGQTGGARPAGGNRFGAGAGTGAGQGGGFQNNSNTSGTGPSRGGGRGRGGAAGAFGRQGGKSSKARKNRLAKRQEFQEMKAPVIGGVRIPTGNGQTVRLRQGASLADLAEKINVNPAALVTVLFHLGEMATATQSLDESTFQILGEEIGWNIQIVSAEEEDKELLQQFDIDLDSEELQEDEDLKPRPPVVTVMGHVDHGKTRLLDTIRKTNVIAREAGGITQRIGAYQVTVDLEGEKRKITFLDTPGHEAFTAMRARGAELTDVAILVVAADDGVMPQTVEAINHAQAAKVPIVVAVNKIDKPGANPEKVRGQLTEFGLVPEEYGGDTMFVDISAKQGTNVDKLLEAVLLTADADLDLRANPDMDARGATVEARLDKGRGAVATVLVQQGTLRIGDAIVAGTSYGRVRAMLDENGNHMKEATPSTPVQVLGLTSVPTAGDLFLVASDDRTARQIAEKRQATERAAQLAKRRKIVSLESLKEQFAKSEVDMLNIVIKGDSSGSVEALEDSLMKIEVSDEVGIQVIHRGVGAITQNDVNLATVDKAVIIGFNVRPNRQVADLADREGVEIKYYSIIYKAIEDIEAALKGMLKPEYEEVVTSHSEIREIFRSSKFGNIAGVMVQDGEVKRGTKCRILRNGVATVNDLEISSLRRFKDDVQSVKEGYEAGINLGTFNDIELGDIIETFEMQEVERK
>NC_017999.1|WP_003815687.1|1803780_1804809_-|transcription-termination/antitermination-protein-NusA
MELDLAGMHQLAIEQGIDLEQLDAALEEALRLAYLKTPHAAKHARVELDTRAGTFTVWARKEIPVEPTEDDPHPAPELGEEYDDTPRNFGRLAAATARQVIGQLFRKAEDDKVFGAFSGQKGKLVTGIVQQDASDPTNVHVAIGDVEAILPRREQVPGERYRHGERLRVYVVNVARGVKGPEIVVSRSHPELVRRLFEREVPELVSGAVSIMAIAREAGARTKIAVRANTDGVNPKGALIGPGGARVRAVMENLGPEKIDIVDWSADPAKFVASALSPAVATGVQVISEKNKTAIAFIHDDQLSLAIGKEGQNARLAAKLTGWKIGIESTEAHAKKVAAEGK
>NC_017999.1|WP_014760611.1|1804883_1805858_+|hypothetical-protein
MQTRHWPDHGIPCRERNISSWCRRIVAALCITALCGALSACSAPRIDGRAESEHQPSACESAYWAADASTATMNGRHHIIMRYLAAKQAVGQWSEVAATCTQRFAQGTIRSAQAEHVAVTLGTRIGGNDTYRTVSDDSLRQVLGIDLDGATLGAMSLAEDRAGFVMEVLAARDTPGATLSRSDRHKTAGQLLFTASGLSRDPREKVYDIQKILASPTSMTDSTTGLSVPTTALTEIDCAREQLAAMADDGASAKSKHTDKTGNNTNGSGDTDSATDTTDVNATDTNTVGTENDARLRVLSTLISSHITSAFALGYPDMDAFLFS
>NC_017999.1|WP_003814594.1|1807465_1808266_-|transglutaminase-family-protein
MKKLVFDYEMKLTFSSPVTDHRFQLRCVPATGPRQQVVDVEVAIEPDVELETTIDSFDSVVMTGFIPQPHTIFSYSVKGIAFVDNAHIKSEIYKPLYRFNSALTIPGPCIEAMIAACRARIAGLPADATPIDQAWEVMDEVYQAFTYTPASTTIRTTAEQALAQRKGVCQDYAHVMLSVCRHVGLTARYIAGLLGGEGATHAWVEIYHDGRWIGLDPTHNRMVDDNYITIAHGRDYRDCMLDIGIFSGYQVQQNQWVNASVHEQLL
>NC_017999.1|WP_003822766.1|1808387_1810571_-|circularly-permuted-type-2-ATP-grasp-protein
MTERSARQFAEELVNRRGDINRELSRNGVRFGVYKNGEYHDRLFPYDPIPRIIESDEFDELEAGLKQRVNALNAYLKDIYSDKRIIHDGVIPEEYVYTSAGYFPQVNGVTPPGGIFAHIAGEDLVQGEDGRWWVLEDNLRIPSGASYPLFARDIERRTNPKLFRDVHVRDNRDYPRLLRKAMDFVSTEGIAVVLTPGRYNSAFFEHAYLAEKTGAALAFPEDLEVVDNKLYFLDYAGNRHRVGAVYRRLSDEYLDPFAFNPDSVIGVPGLLSAYRSGNVAIINAPGNGAADDKAIYYFVPQMVRYYLNEEPILHNAPTYMPMFEKDRKEVLDRMGELVIKDVAEAGGYGVVFGSSLDKAAREDLADRIKEDPRRFIAQEVIQFRDIDVIDPDSGEVSPRKCDLRAFVVTGQNTHVWYSGLTRYSSVPGQMIVNSSQGGGFKDTWVLAPEDGSTDRQREESVASVNLIPHSKRHSLSLVTASKADNLYWLGRYTERAFTTLVQFFPFYDRVMDTDVDAFRPFAKALDLPQDFEDFDGFIHSFLYDGTNPDSVRSAIVAAFNNAVVLRPELTSRLLQYVELAVKNITEAAERSASADDIYSQRDIADDMLAFWGGIENSTADITLKAFVFIGKYIERIDLYTRFHLDNSELDAPLAKLETYSRTLDGMPLPSCFVSGISWLLGQLPSRGYPELTSRLNEFLTDFNSRAITGDPKDAGMLNAMNMDAKRP
>NC_017999.1|WP_041777801.1|1810756_1811659_-|tRNA-pseudouridine-synthase-A
MRLRIDLAYDGGGFFGWAKQPTIRTVQGEIERVLHTITRVPVDDPAEPLRLTVAGRTDTGVHASHQVCHLDIGEETLSRCVGHMSVPPTVALKHRLQRMLPADITIHDVTVAPSGFDARFSALERTYVYRVADRASEVDPRLRGFVLHLDADLDVAAMNEAAAMTIGLHDFGSFATPNPGGTTIREVKTAYWRRIPTRPLVVDGMGERYRTPAAESDLLCFTIVADAFARNMVRSLVGGCIQVGMGKRSTDWFREKMAVPLREGSTGPIAPQGLTLEHVAYPADDELAERAERIRAKRTL
>NC_017999.1|WP_041777732.1|1811933_1816754_+|discoidin-domain-containing-protein
MSLTGVTAAQASDDNLALNQTVTASSYEVATTAPEKAVDGDLGTRWGTAQNKAANEWIEVGLGGTKTVKQINIDFERKDADQNITSFKVELKQGDTYTKVYQKDTRAKQQEIILLDQAQQASAVKVTVLSADGGTMNWVNVGINEISVYSAPKETVLDTADTNHMLGATMTASSNETATLTPDKAIDQNRTGRNNRWASGYETPSNIWLKAEFPRLTAVKDIRIYFFERDVNPKPTNVQSFDLSYTDSEGTEHTLKSGYAMTASGTGYVADVVIQLDQAVNARSLKLSNFAIKSSEYNNVSVAEWEAYSNDQAEPGATLDSVVSDLESNHLTIETDTDTLALPTVPDGYTVKFNGADYEQLIAADGTVNHPLVDKTVQVAYVVTDTATGNTKTTSDIPYVVKGTNQQQEGNNAKPTIIPEIAEWHSTSAAKLAASAVTKVVYDDDSLKAVVDEFVADYKDFTGIKLTAKKGAAEAGAFNFVKTDSTAAIAQLGDEGYTMDIQADRVVAKSSSVTGNMYAMQTILQMTKQDANGFVIGSMRDYPRFTTRGLLLDVARKPVSLEMMREITRTMRYYKMNDFQAHLSDNYIFLENYGKGDNEDEAFKAYDAFRLESSLTNDKGESPTAEDYSISKKTFKQFIQDERALGMNVVPEIDVPAHANSFTKIWPELMVKGRVSPINSNRPLIDHLDVSKPETIAKIKEIFDDYTKGDDPTFDSDTTVHIGADEFLYNYTAYRKFINEIVPYIKDTNTVRMWGGLTWINDHKTEITKDAIENVEMNLWSKDWADGLQMYNMGYKLINTIDDYGYMVPNGSYGRANAYGDLLNISRVFDSFEPNKVRSSGGYQAVPSGDDQMLGAAFAIWSDNIDKSASGLTESDLYWRFFDAMPFYAEKTWAATGKEKGTAAKLTALAAKQGTGPRTNPYYQATSKNSVYESYDFNDGLADASGNGRDLTIGDGSKAAVKDQSLKLAGGSSYATSKLDKLGNGNELTFDVTLQQAAKPGDILFEADAPYGPHDIRVMENGKLGFTRELYNYYFDYELPVGKTVTVTIKVDRQTTKLYVDGEFVSDATGKYIDKGIEKKTGITAATFALPLQRIGSKTSAINGVIDNVIVKKSEAETDQYNKSCWTGTTNSETRYNDTEGLLRYAFDNNPSTIWHSNWKGATDKLTGSNSFYAEIDMCQKYTINQFSFTPRTSQDSGQVTKADLYVKANANDEWKQVATDQVFEASRAKKTFMFDEQEVRYVKFVAKSSNDGWVAVSEFGVANKPSSTVRVFVAADPAEGGTVSVAAEGETGTDTAVDVASGASVTAKAVAADGYRFSGWFTTASETAVSTDATYTFAADGNTALTAKFTKDSTPDPDPKPTISSIAVTKPTVTDYKVGDTFDATGLAVTATMSDGSTKTLTAGEYTLAATQDGAAVALDKAFAKAGTVTVTVTANGKTATFDVTVTAKNPDPEPATLKSIKVTSKPDKTTYTVDETFAKTGLAVTGTWSDGKTALLKDSEYKLSAVDADGKTVDLTKPFTAAGDITVTVTSGKFTDSFTITVKAKTVTPTPGDNKPGENKPGADKPKPNTPDEVAKTGASVTAVVFSALLLLSAGYLLVRKRRI
>NC_017999.1|WP_003814585.1|1817150_1817663_-|50S-ribosomal-protein-L17
MPTPKKGPRLASSPAHERLMLANMATSLFQHGRITTTLPKAKRLRPLAERLITFAKRGDLHSRRRVMRVIRNKSVVHVLFTQIAEQMEQREGGYTRIVKIAPRKGDSTPAAIIELVTEPVSPKKAVVKEAEAATKVAAATEAPVEETAAAEAPVEAPAETAAEETADKAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage