CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_018016	Ornithobacterium rhinotracheale DSM 15997, complete sequence	3 crisprs	RT,DEDDh,cas3,WYL,cas2,cas1,cas9	0	11	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_018016_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018016_1

1079085-1079199

Orphan

Consensus_repeat	Method
AAGCAGGTCCAAAAGAAAACAACGGATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018016_1

>merge|NC_018016|1|1079085-1079199|CRISPRCasFinder
AAGCAGGTCCAAAAGAAAACAACGGATGTCCTTGGAAAGATTCTGATGGTGACGGATTGAACGATAATGTAGATCAATGTCCAAATCAAGCAGGTCCAAGAGAAAACAACGGATG

>NC_018016|1|1|1079085-1079199|CRISPRCasFinder
AAGCAGGTCCAAAAGAAAACAACGGATG	TCCTTGGAAAGATTCTGATGGTGACGGATTGAACGATAATGTAGATCAATGTCCAAATC
AAGCAGGTCCAAGAGAAAACAACGGATG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018016.1\|WP_014790804.1\|1071860_1072214_-\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_014790818.1\|1084722_1085631_-\|geranylgeranylglycerol-phosphate-geranylgeranyltransferase	unknown	unknown	gnl\|CDD\|260124
NC_018016.1\|WP_014790807.1\|1073627_1074083_+\|6-carboxytetrahydropterin-synthase	unknown	unknown	gnl\|CDD\|376501
NC_018016.1\|WP_014790820.1\|1086621_1087479_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|181452
NC_018016.1\|WP_014790803.1\|1070240_1071803_+\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|378414
NC_018016.1\|WP_014790819.1\|1085643_1086555_-\|mevalonate-kinase	unknown	unknown	gnl\|CDD\|224493
NC_018016.1\|WP_014790808.1\|1074061_1074841_+\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|277343
NC_018016.1\|WP_036601537.1\|1077806_1078259_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NC_018016.1\|WP_052040729.1\|1081693_1082881_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_018016.1\|WP_014790817.1\|1083748_1084720_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NC_018016.1\|WP_014790809.1\|1074820_1075756_-\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_174265918.1\|1082957_1083563_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NC_018016.1\|WP_014790814.1\|1079816_1081589_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238518
NC_018016.1\|WP_014790806.1\|1072896_1073583_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NC_018016.1\|WP_014790821.1\|1087475_1087850_-\|DUF4296-domain-containing-protein	unknown	unknown	gnl\|CDD\|379487
NC_018016.1\|WP_014790811.1\|1076114_1077740_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237894
NC_018016.1\|WP_014790810.1\|1075787_1076006_+\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_014790805.1\|1072403_1072835_-\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_014790823.1\|1088635_1089277_+\|DUF4271-domain-containing-protein	unknown	unknown	gnl\|CDD\|379465
NC_018016.1\|WP_036601547.1\|1087849_1088572_-\|polyprenol-monophosphomannose-synthase	unknown	unknown	gnl\|CDD\|133062

Protein	Function_ID	Function_description	E-value
NC_018016.1\|WP_014790819.1\|1085643_1086555_-\|mevalonate-kinase	gnl\|CDD\|224493	COG1577, ERG12, Mevalonate kinase [Lipid metabolism].	1.43346e-20
NC_018016.1\|WP_014790821.1\|1087475_1087850_-\|DUF4296-domain-containing-protein	gnl\|CDD\|379487	pfam14129, DUF4296, Domain of unknown function (DUF4296). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length.	2.51114e-13
NC_018016.1\|WP_014790807.1\|1073627_1074083_+\|6-carboxytetrahydropterin-synthase	gnl\|CDD\|376501	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase. 6-Pyruvoyl tetrahydrobiopterin synthase catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin, the second of three enzymatic steps in the synthesis of tetrahydrobiopterin from GTP. The functional enzyme is a hexamer of identical subunits.	5.27825e-35
NC_018016.1\|WP_014790820.1\|1086621_1087479_-\|prephenate-dehydrogenase	gnl\|CDD\|181452	PRK08507, PRK08507, prephenate dehydrogenase; Validated.	3.09325e-133
NC_018016.1\|WP_014790803.1\|1070240_1071803_+\|Rne/Rng-family-ribonuclease	gnl\|CDD\|378414	pfam10150, RNase_E_G, Ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs.	4.44287e-124
NC_018016.1\|WP_014790808.1\|1074061_1074841_+\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	4.5683e-52
NC_018016.1\|WP_036601537.1\|1077806_1078259_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	2.30921e-74
NC_018016.1\|WP_052040729.1\|1081693_1082881_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.93006e-28
NC_018016.1\|WP_014790817.1\|1083748_1084720_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.81927e-70
NC_018016.1\|WP_174265918.1\|1082957_1083563_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	3.92157e-107
NC_018016.1\|WP_014790823.1\|1088635_1089277_+\|DUF4271-domain-containing-protein	gnl\|CDD\|379465	pfam14093, DUF4271, Domain of unknown function (DUF4271). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 221 and 326 amino acids in length.	1.30977e-10
NC_018016.1\|WP_014790806.1\|1072896_1073583_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	5.8805e-33
NC_018016.1\|WP_014790811.1\|1076114_1077740_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NC_018016.1\|WP_014790814.1\|1079816_1081589_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	1.57717e-114
NC_018016.1\|WP_014790818.1\|1084722_1085631_-\|geranylgeranylglycerol-phosphate-geranylgeranyltransferase	gnl\|CDD\|260124	cd13961, PT_UbiA_DGGGPS, Geranylgeranylglycerol-phosphate geranylgeranyltransferase. Digeranylgeranylglyceryl phosphate synthase (DGGGPS) transfers a geranylgeranyl group from geranylgeranyl diphosphate to (S)-3-O-geranylgeranylglyceryl phosphate to form (S)-2,3-di-O-geranylgeranylglyceryl phosphate, as part of the isoprenoid ether lipid biosynthesis. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.	5.71682e-51
NC_018016.1\|WP_036601547.1\|1087849_1088572_-\|polyprenol-monophosphomannose-synthase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	3.88806e-93

>NC_018016.1|WP_036601537.1|1077806_1078259_+|SsrA-binding-protein-SmpB
MQKQVNIKNKKARFNYELIEEFTAGIQLMGTEIKSIRMGRASIAESFCEVKNGEVFIVNMHINEYDWGTHFNHKIKRDRKLLLHKREIQKLDRKTKESGLTIVPTLLYINDKGYAKLKIYLAKGKKLFDKRHVLKEKDIKRNLDRIQKIY
>NC_018016.1|WP_014790811.1|1076114_1077740_-|ATP-binding-cassette-domain-containing-protein
MLTVSNVSLQFGKRVLFDEVNIKFTKGNCYGIIGANGAGKSTFLKILSKELEPTSGHVSLESDKRMSVLEQDHFKFDEVPVLETVLRGNQKMFEVKTKMDELYAKPDFSEEDGVKAGELGVIYEEMGGWNAESDAATLLSNLGISEEDHYKLMKDLDPKAKVRVLLAQALFGNPDLLIMDEPTNDLDVDTISWLEDFLADYENTVIVVSHDRHFLDAVCTHTVDLDFSKLNLYSGNYSFWYQASQLAARQRAQANKKAEEKKKELQEFIQRFSSNVAKAKQATARKKMIDKLDLQEIKPSSRRYPAIIFEQEREAGDQILETENLKASLDGEVLFDNISINLQKGDKVGIISRNALAQTRFFEIISGNVPADGGEYKWGITTTQTYLPLDHTEFFQKEINLVDWLRQYVDTDEERHEEYIRGFLGRMLFSGDQALKMCTVLSGGEKMRCMFSRMMLLKGNVLLFDEPTNHLDLESISALNNSLENFKGTILMSSHDHELMQTVCNRIIELTPKGVIDRYMTYDEYLKDPKIKELREKYYAE
>NC_018016.1|WP_014790810.1|1075787_1076006_+|hypothetical-protein
MIQFAFFTEIFFGLGDFFQWTFKILPPIGIFMGWLLSAVILGLLIWWCIQIVGFGKDDKRIVDYREPHNFID
>NC_018016.1|WP_014790809.1|1074820_1075756_-|hypothetical-protein
MLSKILKLNRNFVSFLLYGVAIALILLQFHSKLHTDYDWGAAGLFAIGMACLAGYSQWISFFNRTHYFEFFSLIAFALLVPDFSNFSFFAGFLFLTIVALQLLDEFDLSDKLLSPFDIGFFMAIACFLHPPFWIFAGFLLLHYILLGRVMLRGLILCILGILTFSLLTAEVAILFDFTDLAPYLWNRFTPQVSLHFNINYLWLSPILVFTILGLNDYIQNINRHSAEKKLVFFNAIMFIPLAILYTILYANESQYAILFYTIPVAIVLTNYCMYAKTKLKEIVLFGFIISLLLYKYAHLIKLPGVLHDISF
>NC_018016.1|WP_014790808.1|1074061_1074841_+|UDP-2,3-diacylglucosamine-diphosphatase
MAGGGELIIDIPAGKKIYFASDQHFGAPNETESRAREQKFIQFLNEIKPDTHALFLLGDLFDFWFEYKQVVPRGYLRVLGKLAEFADAGIPIYFFIGNHDLWMRDYLEQELNAQVFNRPQVFVINGKKCFIGHGDGLGPGDKGYKRLKKLFTNPLAKGMFYLLHPDFSLWLGKYLSRKNRYLSGDKDDNFYGDDEWLVQYAKRKLSQAHYDYFVFGHRHLPLEIKLSEQSEYINTGDWLSHFTYAVFEDEKLSLKRYIV
>NC_018016.1|WP_014790807.1|1073627_1074083_+|6-carboxytetrahydropterin-synthase
MNPQKIRITKIFSFETAHALFGYDGKCKNVHGHSYKLYVTLRGTPIEDTSNEKLGMVIDFGDVKKIVKSEIVDKLDHAVLLNENSGHKSLGEMLEKQGHKVVFTPYQPTCENMLIDFAERIKKQLPPQVELVYLKLYETENSYGEWLAEEN
>NC_018016.1|WP_014790806.1|1072896_1073583_-|ComF-family-protein
MQSIFDLIFPKRCVGCDRILAKNQDFLCVSCFRNLSFTHWQIDEETPLFQNLNRPDLFQGAQSLLYYDKGGTVQALLHANKYFNQPKIGKFIAQLLPKDLIEFYKTKNIDAVIAVPSHPRTLRQRGYNQVHAFAQEVSNQINANFSPQLLVRSERKSSQTQLGKSDRFSRLDGAFSLNKNPNLGDFQRVLLIDDLATTGSTLIHCAEVLKQNYPTIEIFVLTMAHARS
>NC_018016.1|WP_014790805.1|1072403_1072835_-|hypothetical-protein
MKIKKLLAYCVAIALLSTATTSCKDDDDEKIEIPAELVGTWELTEKYFPSGMPDDWKWKKVRNDEKYTLTLNADHSFTSTQFPNCQKGTYNHWENKLSLNYLCERSEENIYIFKFKDKNYSLILSPTYLNCDEGCSYKFVRVR
>NC_018016.1|WP_014790804.1|1071860_1072214_-|hypothetical-protein
MKIKKLLAYSMAIALLSVANTSCKNDDDENGVLYVRGHFLDSPFCSTPILMLRKDTIIDNERLSGVYLKNIKGTEINFKDTYLVKFKLLDGKVRSCTDFFLIKYKDAHAISIKKIEK
>NC_018016.1|WP_014790803.1|1070240_1071803_+|Rne/Rng-family-ribonuclease
MNKELIISSSGEMVKIAMLEEGRLMEFHQEQVNQRYNVGDIYLAKIKKLAPGMNAAFVSVGSEKDAFLHYHDLGAEVLSMLSYIKAVRSSKYKSHLLKDFPVEKEIDKNGKIEDVIQPGQNILVQIAKEPISTKGPRVTSEISIAGRYLVLVPFSDRVSVSQKIKEKTERDRLTMLVESIKPEGFGVIIRTVAEYKKVAELHQDLEDLVQKWKGIYNNLRAKKLPKRVHSELSRASGILRDKFSEDFVKIHCDDEELLEEIKDFLSVIAPGKEDILELYQKQTPILEFYNVEKQIKTSFGTHVNIPKSKGAYLVIEHTEALHVIDVNSGNIKAVKETQEQNALNVNMQAATEIARQLRLRDMGGIIVVDFIDMREAKNRRKFYDFFKEEMKKDGAKHKVLPPSKFGLVQITRQRVRPEVNIKTYEENPNKNGEEVEAPIAIIERIEARIKAIAEAGKAKKITIHMHPFVAAYLKQGIPSIRKKWAWKYRLPIKIMPRDSFRYLELHITDENQNEIYQESN
>NC_018016.1|WP_014790814.1|1079816_1081589_+|aminopeptidase-P-family-protein
MTAKEKVSALRNAMQSNNIDAFIVFSADPHMSEYMPAHWQERAWLSGFTGSAGFVVITKDKAGLWTDSRYFVQAPKELEGSGIDLFKDGVEGTPNYIDWIIGQVPSGGKVGVNALATSRANWEKLEQKLTDKGIQLVHIPLIDEIWKDRKIEKSDAIFVHPLEYAGKSVQEKLTKIKEKMHQKGADTHIVTALDDVAWTTNLRGNDVAFNPVFLGYLCIEEDKTTLFVEPQKVTEDVKAHLEQAHVQIKDYDAFFDYLKTLKGKNILLAPNANQLIFSTLSADNKIIVAPAPGNLFKAIKNKAELEGFRKVMVRDGVSLVKFFHWLKTSAGKEELDEFTIGEKLRDFRAQGDAFVGESFGSIVGYEGNGAVVHYSAAKDTAKKVKNEGTILIDSGGQYREGTTDITRTLSLGEPSAEFKKDWTLVLKGMINLSMARFPKGTCGVHLDAIARLPLWMNDRDFGHGTGHGVGSFMNVHEGPQNIRKDLNNTQLVPGMVVSNEPGLYRENKYGIRIENLIAVSEHSTSEFGEFYEFETLTLCPLFTECLDKELLTEDEKAWLNKYHTRVEDALSPYLEGAEKEFLIHECRKID
>NC_018016.1|WP_052040729.1|1081693_1082881_-|HAMP-domain-containing-histidine-kinase
MKSFKKAQNLILNSPVLNKWVVLFVLLAILITTVYISKTIVDQLRSEEQRKVETIVAALRLQSSDKETSPEARDLALKILEENTAIPLILIDENNVFSYQKNLDKIEDRLATDTVFLKNYLHKLELYHEPIKVDLPFGTQSIYYQNSQLLKKLQYYPLILIVILMIFAALVIWYFRIVDASSQNFLWAGMAKETAHQIGTPLSSLLGWVEILKYENVDKNILYEIESDVKRLKQIADRFSKIGSMPELKKTNVVKVAKDSYEYLKKRISDKVVFSFYSQEKELYANVSPELLSWVFENVMRNAVDAMQNRGEISFKILKKENKIIILIKDTGPGIDSSKIGKIFDPGYTTKKRGWGIGLSLAKRIVEEFHNGSIYVDFSDKENGTQFCIELNECL
>NC_018016.1|WP_174265918.1|1082957_1083563_-|superoxide-dismutase
MMAFQLPELPYAFDALEPNIDAKTMEIHHDKHHAAYTNNLNAAIEGTPLEGKTIEEILVEGFETPAVRNNGGGFYNHSLFWQILSPNGGGEPKGELAEAIKEKFGSFEKFKEEFSTKAKTQFGSGWAWLCVYKGGKVDVCSTANQDNPLMPNGCGGTPILGLDVWEHAYYLKYQNKRPDYVAAFWNVVNWDKVEELYAKNK
>NC_018016.1|WP_014790817.1|1083748_1084720_-|rRNA-pseudouridine-synthase
MNTNRRGGNRRGGTPRNAQSDNRKRASRPFKKTDRRTENSEDKKPFRKEGDARGDFKRKPSFGSNRKFGNKPFRKRFSSKKTEEEPKDTRLRLNKFIAKSGLCSRREADEHIKNGMVEVNGKMVTEMGYKVEPTDEVRFDGKILTPEDKIYILLNKPKGFITTTNDERDRKTVMDLVKNATPTRVFPVGRLDRQTTGVLLFTNDGDLTKKLTHPSHNVRKIYHVVLDRPLHGDDMERVRKGIPMTEGIARVDKVSYIDGKPHNEVGVEIHIGWNRVVRRIFERMGYKIVSLDRVSFAGLTKKNVKRGTWRILDKQEVDFLKMV
>NC_018016.1|WP_014790818.1|1084722_1085631_-|geranylgeranylglycerol-phosphate-geranylgeranyltransferase
MKAPQGNSYAMKLLALFAVIRGYNVAILVLAMYFAAFFIFAKGDSLSQFFRNVEIHYIIISTALSVSAGYIINNFYDLDKDQIARPIMAYLAKFVSQNFKLITYLFLNSLALIFAFLASWRVAIFILVFQFLTWFYCHKLNKIVFINNLSSTVLALFPFLALFLYFNNYSAVIFVHGAFLGLNLLTLDIEKDFLTQRADSIYEYQTLPTVLGTRKAKLILNLLLLLTAVVAFLLAHFDGVGNMSYYFYSVGVVFFALPYFILKAKSKKEWHLLHFVLKILLWIGVLSLAWIKINPLDLQKFI
>NC_018016.1|WP_014790819.1|1085643_1086555_-|mevalonate-kinase
MNYPSFFAKILLFGEYGIIENAKGLTIPYNFYKGTLKFTDISRENKSRESLKKYAQYLDQNMPQQFDIERLNADLEKGMFFDSNIPQGYGVGSSGALVAAIYDEYAVEKLAKNQLSKKEISELKHTFSQMESYFHGKSSGIDPLICYMNIPLLIHSKEEIDTIGIPQNANGKGAVFLINSGTPGETEPMVQIFFQKLKQEGFRKTLRKEFTKYNDACIEAIVKGKKEPLFKNLKNLSTWAFVHFKPMIPSKLLNAWEKGIQTNDYYLKLCGSGGGGYVLGFAEDFEKAKEALSDFQLEPVYRF
>NC_018016.1|WP_014790820.1|1086621_1087479_-|prephenate-dehydrogenase
MKLAIIGVGLIGGSLALKSKKLNLFSEIIGIDKNPEHLDQALSLGIIDRQADLKQGVQVADVVMIAVPVEATISVLPQVLDYVDNQCVFDVASTKESIIHSIENHPKRKNYVASHPMWGTENSGPSAATENAFEGRSLVLCDTQNSSPEKVEYIKKLYESLGMNVIYMDAKEHDVHTAYVSHISHVTSYALANTVLEKEKQEDTIFQLASSGFSSTVRLAKSHAAMWLPIFKHNRENVLDVLDEHISQLEQFRKDLILENYDKVEDFILNANRIRGVLEEKKQKH
>NC_018016.1|WP_014790821.1|1087475_1087850_-|DUF4296-domain-containing-protein
MKKLIFAIFSLMILACNHGIEKPDNLVDRDTFKSILTQMYLYKQAPTVSVARDIDFNIINATILANHHVSAEDFKNSLEYYMVDRGQYEEILKEIQDSIHNQIDRPTEEESVPAVDKKTIAPNE
>NC_018016.1|WP_036601547.1|1087849_1088572_-|polyprenol-monophosphomannose-synthase
MKKLVIIPTYNEKENIEKIVRATLALPQDFDVLVVDDSSPDGTVEIVKNLIELFPNRVFLEVRKVKDGLGRAYVHGFKWALANGYDYIFEMDADFSHNPNDLPKLLKACEEGADMSVGSRYSQGVNVVNWPMHRVLLSYFASKYVRLITQLPLHDTTAGFVCYTRKALESLDLNKIEFKGYGFQIEMKYKIWKKGLKIVEVPIIFTDRTLGESKISNSIIKEGFFGVIKLKYKSLTGKIK
>NC_018016.1|WP_014790823.1|1088635_1089277_+|DUF4271-domain-containing-protein
MEGNLRLVENKDGIFLLLMAICILLMFTRWAFRKYYDDLGTLEKFSEKKDNFFILSGIYIVVFSTLVGLFLLPFVVRWCVWQDYHSYTQLLFLVLIIIGFVLFKALVNTLIFTTVGYAEILRNFFISRSYFGIFTTLGLVAFSFLYYFSKIDTRILTYVILGFLGVMFFIKLISFYLRSSKEYKFPIYYIILYLCALEILPFVIVCKFILLES

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Crispr_ID: NC_018016_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018016_2

1241238-1241317

Orphan

Consensus_repeat	Method
TAAACACCCCAATTATAAACCGAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_018016_2

>merge|NC_018016|2|1241238-1241317|CRISPRCasFinder
TAAACACCCCAATTATAAACCGAAAAACGGCATTAAGTTGCTTTTAAAATGTATAAACACCCCAATTATAAACCTAAAAA

>NC_018016|2|2|1241238-1241317|CRISPRCasFinder
TAAACACCCCAATTATAAACCGAAAAA	CGGCATTAAGTTGCTTTTAAAATGTA
TAAACACCCCAATTATAAACCTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_018016.1\|WP_014790979.1\|1252350_1252545_+\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_081484559.1\|1238830_1239412_-\|antA/AntB-antirepressor-family-protein	unknown	unknown	gnl\|CDD\|369825
NC_018016.1\|WP_014790969.1\|1239746_1240289_-\|Rha-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378235
NC_018016.1\|WP_014790968.1\|1239427_1239637_+\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_014790976.1\|1249538_1251386_-\|type-IIA-DNA-topoisomerase-subunit-B	unknown	unknown	gnl\|CDD\|235501
NC_018016.1\|WP_155814552.1\|1252626_1253103_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_018016.1\|WP_014790970.1\|1240292_1240472_-\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_042275259.1\|1237734_1238100_+\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_014790964.1\|1237259_1237586_-\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_014790966.1\|1238370_1238820_+\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_014790974.1\|1247313_1249215_+\|T9SS-type-A-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|275036
NC_018016.1\|WP_014790972.1\|1242819_1243920_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_018016.1\|WP_014790973.1\|1243927_1247086_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_018016.1\|WP_014790977.1\|1251573_1251858_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|368240
NC_018016.1\|WP_014790963.1\|1235151_1237176_-\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_014790971.1\|1240568_1241078_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|311152
NC_018016.1\|WP_052312690.1\|1241748_1242807_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_018016.1\|WP_014790978.1\|1251838_1252078_-\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_014790962.1\|1234258_1235140_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379165
NC_018016.1\|WP_014790975.1\|1249221_1249431_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_018016.1\|WP_155814552.1\|1252626_1253103_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.16579e-28
NC_018016.1\|WP_014790972.1\|1242819_1243920_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.3231e-62
NC_018016.1\|WP_081484559.1\|1238830_1239412_-\|antA/AntB-antirepressor-family-protein	gnl\|CDD\|369825	pfam08346, AntA, AntA/AntB antirepressor. In E. coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the bacteriophage 933W.	1.50818e-24
NC_018016.1\|WP_014790976.1\|1249538_1251386_-\|type-IIA-DNA-topoisomerase-subunit-B	gnl\|CDD\|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NC_018016.1\|WP_014790973.1\|1243927_1247086_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_018016.1\|WP_052312690.1\|1241748_1242807_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.22126e-36
NC_018016.1\|WP_014790971.1\|1240568_1241078_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|311152	pfam07022, Phage_CI_repr, Bacteriophage CI repressor helix-turn-helix domain. This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic.	1.53787e-10
NC_018016.1\|WP_014790969.1\|1239746_1240289_-\|Rha-family-transcriptional-regulator	gnl\|CDD\|378235	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	1.57735e-19
NC_018016.1\|WP_014790962.1\|1234258_1235140_-\|AAA-family-ATPase	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	1.62289e-10
NC_018016.1\|WP_014790974.1\|1247313_1249215_+\|T9SS-type-A-sorting-domain-containing-protein	gnl\|CDD\|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	0.00130365
NC_018016.1\|WP_014790977.1\|1251573_1251858_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|368240	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE. ParE is the toxin family of a type II toxin-antitoxin family. It is toxic towards DNA gyrase, but is neutralized by the antitoxin ParD. The family also encompasses RelE/ParE described in.	1.57455e-09

>NC_018016.1|WP_014790971.1|1240568_1241078_+|helix-turn-helix-domain-containing-protein
MDKKLILREIKKHLGYTKDGDFADFLGIKQNTLSNWKSRNTIDYDLIISKCENIDANWLLTGKGEMLKSPAKQESHPQQAAEPIAIYQKAPIPPVPSHWERQVASLQKEVAYLQRENQHLQEWLKDKDKVIKALEEKESTRIQELEEEIARLTQENHAIKSQPQNRKTG
>NC_018016.1|WP_014790970.1|1240292_1240472_-|hypothetical-protein
MKKIRVHPDIAHQIAKEFSVTYQTVQMSLRYVFQSETAEKIRQRAKELLQEEAKTINIQ
>NC_018016.1|WP_014790969.1|1239746_1240289_-|Rha-family-transcriptional-regulator
MNNLSIKDTMSSREIAQIAGKRHTEVLRSIRNMERGWVKVSGRNFALAEYLDEQGKPRPQYELTKTECLYIATKFNDEARARLVLRWEALETKKQEEPVLIGNDNRKQRMELIELIRANLLRGDVVAVACENGFSRTRCENVMRHRVFHPEIVKALYDKAMERKKLLGIPMSEMIDNLNQ
>NC_018016.1|WP_014790968.1|1239427_1239637_+|hypothetical-protein
MKEIILTERVVFSIGGKHPSESFTFPAIQKRLDEGYVVKSIFYSPTGGANSVNGIALTVHLQKPKTEPQ
>NC_018016.1|WP_081484559.1|1238830_1239412_-|antA/AntB-antirepressor-family-protein
MMTNLIKITEKNGENTVSAKDLHQFLGSNEQFGKWIKRMLGYGYTQGVDYETLALLVPAGEHNKAWTKDYVLTLDTAKEIAMLQRSKKGREIRRYFIEVEKTARKQFVQMPKSLNVYGMEALPYDWWLLQNGYSVSSGQRNARIRKHPEHFYKGTNGWYINKLYAEALLAIKLGKEKLQQVQALPQVLQVEMF
>NC_018016.1|WP_014790966.1|1238370_1238820_+|hypothetical-protein
MKQFRLNVVIEYLDKDLPIKNRGIIHPILKSLALMHHLDYVIDKDSQTFLKEAMPTSSLFDLVYFRSTENSRIERKQLKKVIELIFDHYNPLLGGVDVYCMYQKFLKTFPFPKSFVRPLNYPYAEVYENGSPTLCIWKEELLDILDDVS
>NC_018016.1|WP_042275259.1|1237734_1238100_+|hypothetical-protein
MLLHPKTFFFSGENNVFDEISLINFETINADYLQMTYQFAAENHIALGKLGSSLYNQFYPLLLPLNVGNNNTLKKLVDILTRKYKLVPVDLNPIYACDNLPDLQHRDDLKIFLEAIALSQH
>NC_018016.1|WP_014790964.1|1237259_1237586_-|hypothetical-protein
MKLIKNLKELEVGKFYKGKSNDYYKFSSFNGMAGAEAISFSLSDYGKGMEDYISLDTPWLEIIFKECGGLVEISEEEFLKAFKKFCKHRKEILKLEKNTLKIAELSLL
>NC_018016.1|WP_014790963.1|1235151_1237176_-|hypothetical-protein
MYAYQNNIVSIPAKLLYEDWAIISYDYYKVLCRRGKLVRTKEGRGQDNQAWVSFHDLPVVKGINLKEYCVRALGRPEDNLVRNQLEKYILPDPKAIDFFAQHRKPNGKPLKFEKQRQKATSAMILNAIETIFKDRVASNKIFGKKKTQIWQNISEAVNGLNTEKWHYDLPSNARSLQRKYNQYLKDRYMAFIHKGEGGVNARKVNEDIERLIIGLYCMPNKPYMSSTHDMYLQFMGGALEAYDAQTGEIFNREDFYDENGQMVELSESTINNYLNKPENKIIIEKCRNGAYDFSQKSRPHVHRHAPLFSMSKITLDDRDIMHHKLPDGSKVMAYYAFDSLSGAMIGIAHSKSKNQTLFLDCIRNMFQFTTSYGLGVPMQMEVEQHLVSDFSEGLMKAGVLFPFVRWCNPTNSQEKEAEGFIRVKKYGVEKDRHQNVGRHYSRNESNRVTRQKIFDEANDNYKEAKATYEQIVAWELEEQTLYNNELHPNQRKYKGKTRLEVFLENVNPNLPKLNKALLAQFIGKHTKTTIRRNQYVNVQYEKYQLPTPQVLSMLAPNNYQVDAYFLPNDNEEKEVYLYQNGEYLCTCKPVPVFNRANVEWTDEDARKYQEAMAYITKFDAMTRRLSEEKLPKIGTMKPTAAIEVDFEVVEEAQELEYSYTDTTINQRNRAINDL
>NC_018016.1|WP_014790962.1|1234258_1235140_-|AAA-family-ATPase
MITTELKKRIIEAVKNNLPNYKNAEKHAQALGVNSSQYSKIFTGGDVDYSLADAKWINIARRLGVQLKEETPWVTVKTETYEYVYSQLEACQTRSISAILCDLAGIGKTHTAKQYVKENRNAIYIDCSQVKSKQKLIRKIAQEFGIIYTGRYADVYEDLVFYVKQLEMPLVILDEAGDLDYPAFLELKALWNATEYACGWYMMGADGLREKINRQKNLNKVGYTEIFDRYGNDFKKVSPDVKEALEEFYLKQIAQVSKANHSTLTPKQMFAKTKGSLRKVRIEIEKQRLLNNG
>NC_018016.1|WP_052312690.1|1241748_1242807_+|TolC-family-protein
MKISLGQPWNSNVNATLTQVLFNQSVFTGLKAARSTKEFYMLNKELTDEQIIEKVAHAYFQVYQTQQKLNNLESNLALTEKTVKVIQGQSEAGLARKIDLDRANVTLNNLKSSQQQLVNAVQIAQNALKFMVGLSMDTQIQLPEDTFAPSILALNEQADLSKRTEVQVIEKQLELLEWQKKANQAEYYPSAALVANYGWLGQGKKMPWWHGEEDKVYWSDLASIGLNVKIPIFNGFSIKSKVKQSEIDILSAKAGLKDTKLALEMAYKNATEQMKNTAISIDVQQENVKLAENVLTNTQNNYQYGLATLTDLLDSERALADAKNNLTNAKLDYKLAEIEYLKAQGNLKSLIK
>NC_018016.1|WP_014790972.1|1242819_1243920_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKLVIPVIIIIALIVGVFFILKGNKKSNEEKVAIVKTENSRVAVQVAKVKEDHLSGQFSANGTFVPEKETTVSPEMGGQVVAIYVDEGSYVRAGQTIAKLKGDKVNVGLDASRAQLDNAKAALVNAESQLARFEAAYKTGGVTDQQVDQMRLQVKQLQSQVKSAQAGVRNAQLSSGDTNVVAKVSGIVNRKLVETGAVVGAGTPIVQIVNISSLKLKVNVDESLVTKLHVGDVVSVKPTVLNEPIQGKITFIAPMSDGALKFPVEITVNNKDQRLKAGMYAVANFDQNGEGDAPVLVIPREAFVGSVSQNQVFQVVDSTAELKTIQSGRNLGDVVEVLSGLKLGDVVVTSGQINLENGTKVKIIK
>NC_018016.1|WP_014790973.1|1243927_1247086_+|efflux-RND-transporter-permease-subunit
MKLAEISIKRPSIVIVMLALALIAGFYSYKQLSYELVPNIETKVVTVATVYPGASPAEIENTVTKKVEDAVSTLENVKKIQAKSYESLSVVIIQFANEANVDNALNEAQRKINAIRSELPEGVKEPSLSKFSLSDLPIMSIGITSNLSNTDLYDLVKDQIQPQFSRIPGVSSVNIVGGNEREIRVSLDPAKLEGYGLTVPQVQQILMASNMDFPTGNLKTRKNSTLIRLSGKFSSVQQMRNLVIASHNGVNIKLSDIADVQETQKEVEKLARINEDNTLLLQIQKQTDANAVEVSSLVKEKMKSVEEQYKDQGVKIQLASDTSEFTLTAANNVIHDLYIAVALVAFVMLFFLHSLRNALMVMVSIPASLIATFIGLYVLGYTLNLMSLLALSLVVGILVDDAIVVIENIHRHMEMGKNKVRAAYDGASEIGFTVTAITTVIVVVFLPIAMSSGLVSDIVRQFCVTVVIATMLSLLMSFTVVPWLFSRFGKLEHISNKNIFGRIINTFEKGLKAFTHWMTDILKWCLGHKLITIVVTGVMFFSIVPLFKYGFVGTEFFPGVDKGEFIVQIEMNKDASLQETNFMTQKAEDYILKQPEVKTAITTVGQVSSGGMGASQATAYKSEISVQLRDDVKRDESEIYAAKLKRQLQQVLVGAKIKTIPVGLMGANQAPLQLVVTADNLDDAMDFAVEAMEILKGIDGSSEVELSVEDGTPEINVEVDRDKMAALGLNVATVGQTMRTAFAGNTDNKFRQGQNEYDINLQFQEGSRENIDDVKNLIFVNSQGQQIKLMQFANVSYASGPSLLERNDKAPSVTINSQVVGRSSGAISKEWESRLSEIQAKPGVHYKWSGMQENQKEGFGTLGIALMAAIMLVYMVMVVLYNDFAKPFIVLLSVPLSFIGAIWALALTNMSLNIFTILGLIMLIGLVAKNAILLVDFANHRVEKGEDTITALIQANHARLRPILMTTIAMVFGMIPIALATGGAAKMNNGLAIVIIGGLLSSLFLTLVIVPVVYLTFDLIGKRINKNKQKPDYGALMKADYDHKNIKEEYEF
>NC_018016.1|WP_014790974.1|1247313_1249215_+|T9SS-type-A-sorting-domain-containing-protein
MKKHLFLIASVFFAFSAKAQHTLAVKKNTNVKVSPNTLFYVKGDAKLDKYDAGTNKFSNQGNVKIDGGLATNDDGKNFVNEYYKTAGYGQLIIKQNASNGGNISSEVKFNPVYSLHPLSLPYSGVSVENVVTQVFGSASSGAFVGFTPGRGGFKKFDKKRYENPLFFWNNNENDKHGLEQLGQGDRIGDNDLNLARYYAVSNFSSLGKIGDAKKTLSGVPVNKSFTVSLNPYSLVNNKDVNAWGEAYGSYIIDFTQAMPKGWENYSYKSSNVSANGFGSNIFYLGNPYTSNIDLIKLVEQSGAENNIEAMVQFTSQIYDPSVNNGTVSNSYGVNMGGLTGQGGGDNKFRYVRPFDVFAVKTNGSKVDLNFNDEVKTFKSESNTPNNFYLRNSNNNSLFAQVGLDLYDANGNTGQRAYVVASNLYDEGVDVTELHNVAIKEENTGIYTLQDNEEVIRRGEGKLFVNGINSDTYLGKPVALVMQNGNGQYRLKARLNDDAKASANKFYFEDKNTGKIQEIGEDFDYQFISNGTEKDRFVVYWGQVPKVNDVAETAKKATQSTLVFKDGNDFKVRFDKGIKKADVFVYNISGQLLSVAKNVDATKDYIVPVQANTTVYVVKVVGDNGSVVTKKIIK
>NC_018016.1|WP_014790975.1|1249221_1249431_+|hypothetical-protein
MKKLISSLLFMLLSVFSFAANNPGAPGTGGSPEEPPAPIDSNALILLGAAVILIVAYAMYKRINAKRLA
>NC_018016.1|WP_014790976.1|1249538_1251386_-|type-IIA-DNA-topoisomerase-subunit-B
MANYTEDNIKTLSWSEHIRVRPGMYIGKLGDGSSQDDGIYILIKEIIDNSIDEFVMGSGKTIEISIKDDVVTVRDYGRGIPLGKMVDAVSKMNTGGKYDSRAFKKSVGLNGVGTKAVNALSSFFKVQSVRDGKTREAEFSKGELIEASEEKETTLRKGTKISFKPDPTIFHNYRFRTEYIEKMLKNYVYLNPGLRILFNGEEFFSENGLKDLLEDSIDEEIAYPIIHLKGEDIEIALTHSNKSYSETYYSFVNGQNTTQGGTHLAAFKEAVVRVGREHFNANFDASDIKKSIIAAVAIKVVEPVFESQTKTKLGSTEMGPDMPSVRTFVNDFIRTKLDNYLHKNPEVAELLLKKFRQSERERKELSGVRKKAKELAKKVSLHNEKLRDCRQHYNNPKAKRSLETTIFITEGDSASGSITTCRDTETQAVFSLKGKPKNSYGQEKRLVYENEELNFLQAALNIEDSLEDLRYNNVVIATDADDDGMHIRLLIITFFLQFFPELIREGHLYILQTPLFRVRNKKETRYCYNEEERKKAIQELGKNPEITRFKGLGEISPNEFKNFIGKDIRLEPVMIGKDTNIESLLEFYMGKNTRERQEFIIDNLVIEDDRELTIA
>NC_018016.1|WP_014790977.1|1251573_1251858_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MLTIWTKTAEKDLFNLIGYIHEDSPQNAQMVLNKIEVLVDSLGQMPYKYPKELIYNDDSVRYAVLYSFKIIYKVGFGEIKILRIFHTAQNPKKI
>NC_018016.1|WP_014790978.1|1251838_1252078_-|hypothetical-protein
MTISETQNRIIKQVLNTENLSILNHIEMLLSSKTKHSTMDGKELNTQEYIQAIDEAIAEKECSSSEDVFKKIKDAYNLD
>NC_018016.1|WP_014790979.1|1252350_1252545_+|hypothetical-protein
MKLILITVGILLLCVAGIAIKIWAKKDGKFAGTCASQNPHLNKTGEPCGFCGKMPDQCENQTEK
>NC_018016.1|WP_155814552.1|1252626_1253103_+|sigma-70-family-RNA-polymerase-sigma-factor
MNLLWDKVHYYVLSKIQNKADAEDISIKTFTKVFQKLKLYNEDFDFTTWVRAIAHNTMIDYIRKKPELNISIDDELCNVDLSSAVPSPEQSLILEQSAEELMHHVAKLPAIYQEIIRLRYLEEKTYNQIAQELNLSLSNVKVRLLRAKALLEESMKNK

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Crispr_ID: NC_018016_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018016_3

2221618-2222892

TypeII

Consensus_repeat	Method
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	PILER-CR
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	CRISPRCasFinder

16 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_018016_3

>merge|NC_018016|3|2221618-2222892|PILER-CR,CRISPRCasFinder
GTTGTAATTAGGTCTCAAATTATTATTTTTGTGTGAGTAATCACAAGATGAACCGCTTAACGGCTAAACAATATCTAGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGCGAAGGGATCACAGGATTAAACTTAGGTTAGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGTTTATGTAAATTAAAATAGATTAAAAATGGGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGTTATAGAATTTGAAGCTGACGAGGAATTTCGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGAAATTTCAGAAGCTAAGTTAACGCACATAGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGCAATTTCTTAATTGGTGATAACCAACACCGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGAAATGGTCAGAATGTGACGGATGTTTATGTGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGTGGCATTCCCTGCGAGTGGACTTACAACAGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGAACACGCAAAAGATTTAGCCACAGCGCAGGGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGAAACAGATGAAGTGTTTAAATCTGGTCCTAGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGAAACTTGAAAAGATTCGTTTAGACTATTTAGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGAATCTAAAAGAGCAAAGTGATGGAAGACTGGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGTATAGGGGGATATTACTGCAAGAGAGAGTTGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGATCTTCTCGATTAATTAATAACCTCATACGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGGAGAAAGCACAAGCTAAATTAAAAGAACAAGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAGACGATATTTAATTATATCGTGGTAGCAAGGGTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG

>NC_018016|3|1|2221618-2222892|PILER-CR
GTTGTAATTAGGTCTCAAATTATTATTTTTGTGTGAGTAATCACAAG	ATGAACCGCTTAACGGCTAAACAATATCTA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	CGAAGGGATCACAGGATTAAACTTAGGTTA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	TTTATGTAAATTAAAATAGATTAAAAATGG
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	TTATAGAATTTGAAGCTGACGAGGAATTTC
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AAATTTCAGAAGCTAAGTTAACGCACATA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	CAATTTCTTAATTGGTGATAACCAACACC
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AAATGGTCAGAATGTGACGGATGTTTATGT
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	TGGCATTCCCTGCGAGTGGACTTACAACA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AACACGCAAAAGATTTAGCCACAGCGCAGG
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AAACAGATGAAGTGTTTAAATCTGGTCCTA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AAACTTGAAAAGATTCGTTTAGACTATTTA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AATCTAAAAGAGCAAAGTGATGGAAGACTG
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	TATAGGGGGATATTACTGCAAGAGAGAGTT
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	ATCTTCTCGATTAATTAATAACCTCATAC
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	GAGAAAGCACAAGCTAAATTAAAAGAACAA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	ACGATATTTAATTATATCGTGGTAGCAAGG
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG

>NC_018016|3|3|2221618-2222892|CRISPRCasFinder
GTTGTAATTAGGTCTCAAATTATTATTTTTGTGTGAGTAATCACAAG	ATGAACCGCTTAACGGCTAAACAATATCTA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	CGAAGGGATCACAGGATTAAACTTAGGTTA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	TTTATGTAAATTAAAATAGATTAAAAATGG
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	TTATAGAATTTGAAGCTGACGAGGAATTTC
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AAATTTCAGAAGCTAAGTTAACGCACATA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	CAATTTCTTAATTGGTGATAACCAACACC
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AAATGGTCAGAATGTGACGGATGTTTATGT
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	TGGCATTCCCTGCGAGTGGACTTACAACA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AACACGCAAAAGATTTAGCCACAGCGCAGG
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AAACAGATGAAGTGTTTAAATCTGGTCCTA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AAACTTGAAAAGATTCGTTTAGACTATTTA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	AATCTAAAAGAGCAAAGTGATGGAAGACTG
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	TATAGGGGGATATTACTGCAAGAGAGAGTT
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	ATCTTCTCGATTAATTAATAACCTCATAC
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	GAGAAAGCACAAGCTAAATTAAAAGAACAA
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG	ACGATATTTAATTATATCGTGGTAGCAAGG
GTTGTGATTTGCTTTCAAGTTCTTATTTTTGTGTGAGTAATCACAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018016.1\|WP_014791813.1\|2217453_2218245_+\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350622
NC_018016.1\|WP_014791818.1\|2223349_2224246_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_018016.1\|WP_014791817.1\|2223000_2223345_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_018016.1\|WP_014790218.1\|2232667_2232913_+\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_014791812.1\|2215309_2217337_-\|gliding-motility-associated-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|275004
NC_018016.1\|WP_014791809.1\|2212772_2213462_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NC_018016.1\|WP_014790259.1\|2232971_2234135_+\|hypothetical-protein	unknown	unknown	unknown
NC_018016.1\|WP_014791814.1\|2218267_2219044_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NC_018016.1\|WP_014791810.1\|2213493_2214843_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NC_018016.1\|WP_014791824.1\|2231929_2232535_-\|Smr/MutS-family-protein	unknown	unknown	gnl\|CDD\|376599
NC_018016.1\|WP_014791820.1\|2229047_2230517_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240533
NC_018016.1\|WP_014791819.1\|2224245_2228853_-\|hypothetical-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|375967
NC_018016.1\|WP_014791815.1\|2219040_2219694_-\|O-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NC_018016.1\|WP_014791823.1\|2231398_2231845_+\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NC_018016.1\|WP_014791811.1\|2214858_2215305_-\|DUF302-domain-containing-protein	unknown	unknown	gnl\|CDD\|269820
NC_018016.1\|WP_014791821.1\|2230723_2231065_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NC_018016.1\|WP_014791816.1\|2219918_2220578_+\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NC_018016.1\|WP_014791059.1\|2220600_2221485_-\|IS982-family-transposase	unknown	unknown	gnl\|CDD\|372648
NC_018016.1\|WP_014791822.1\|2231076_2231379_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NC_018016.1\|WP_014791808.1\|2211546_2212773_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650

Protein	Function_ID	Function_description	E-value
NC_018016.1\|WP_014791813.1\|2217453_2218245_+\|M15-family-metallopeptidase	gnl\|CDD\|350622	cd14847, DD-carboxypeptidase_like, Uncharacterized proteins of the MEROPS peptidase family M15, subfamily B. This family of uncharacterized proteins similar to D-Ala-D-Ala carboxypeptidase pdcA (Myxococcus-type) are zinc-binding enzymes that belong to the peptidase M15 subfamily B. The enzyme D-Ala-D-Ala carbozypeptidase catalyzes carboxypeptidation reactions involved in bacterial cell wall metabolism.	1.4582e-65
NC_018016.1\|WP_014791818.1\|2223349_2224246_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.15961e-107
NC_018016.1\|WP_014791817.1\|2223000_2223345_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.49188e-24
NC_018016.1\|WP_014791812.1\|2215309_2217337_-\|gliding-motility-associated-C-terminal-domain-containing-protein	gnl\|CDD\|275004	TIGR04131, conserved_hypothetical_protein, gliding motility-associated C-terminal domain. This model describes a protein homology domain unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility. Proteins with this domain frequently pair with members of family TIGR03519, whether one such pair or many occur in a genome. More than 30 members may occur in one genome.	1.45247e-10
NC_018016.1\|WP_014791809.1\|2212772_2213462_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	3.72725e-108
NC_018016.1\|WP_014791814.1\|2218267_2219044_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.11042e-26
NC_018016.1\|WP_014791810.1\|2213493_2214843_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NC_018016.1\|WP_014791824.1\|2231929_2232535_-\|Smr/MutS-family-protein	gnl\|CDD\|376599	pfam01713, Smr, Smr domain. This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2. This domain exhibits nicking endonuclease activity that might have a role in mismatch repair or genetic recombination. It shows no significant double strand cleavage or exonuclease activity. The full-length human NEDD4-binding protein 2 also has the polynucleotide kinase activity.	9.70068e-11
NC_018016.1\|WP_014791820.1\|2229047_2230517_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	6.89867e-16
NC_018016.1\|WP_014791819.1\|2224245_2228853_-\|hypothetical-protein	gnl\|CDD\|375967	pfam18541, RuvC_III, RuvC endonuclease subdomain 3. Cas9 proteins are abundant across the bacterial kingdom, but vary widely in both sequence and size. All known Cas9 enzymes contain an HNH domain that cleaves the DNA strand complementary to the guide RNA sequence (target strand), and a RuvC nuclease domain required for cleaving the noncomplementary strand (non-target strand), yielding double-strand DNA breaks (DSBs). The crystal structures of type II-A and II-C Cas9 proteins highlight the features in Cas9 enzymes that support their function as RNA-guided endonucleases. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. The RuvC domain forms the structural core of the nuclease lobe, a six-stranded beta sheet surrounded by four alpha helices, with all three conserved subdomains (I, II, III) contributing catalytic residues to the active site.	1.34771e-45
NC_018016.1\|WP_014791815.1\|2219040_2219694_-\|O-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	4.29183e-58
NC_018016.1\|WP_014791823.1\|2231398_2231845_+\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	9.42071e-54
NC_018016.1\|WP_014791811.1\|2214858_2215305_-\|DUF302-domain-containing-protein	gnl\|CDD\|269820	cd14797, DUF302, Uncharacterized domain family DUF302. These domains are mostly found in bacterial single-domain proteins and have been shown to form homodimers; they may also bind zinc. Also characterized as COG3439.	4.59871e-34
NC_018016.1\|WP_014791821.1\|2230723_2231065_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	4.62912e-37
NC_018016.1\|WP_014791816.1\|2219918_2220578_+\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.4541e-79
NC_018016.1\|WP_014791059.1\|2220600_2221485_-\|IS982-family-transposase	gnl\|CDD\|372648	pfam13612, DDE_Tnp_1_3, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	6.58665e-15
NC_018016.1\|WP_014791822.1\|2231076_2231379_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	8.11943e-34
NC_018016.1\|WP_014791808.1\|2211546_2212773_-\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	2.45324e-25

>NC_018016.1|WP_014791059.1|2220600_2221485_-|IS982-family-transposase
MSNLEASYNFILNKLIEFSGTENFYFKPVKPKLSDIELISLIILAEFKSIDSEYQLFREIKGWAIESKIERSVYNRRKRKLFPFLEEIRCKMVKKFNDFENYFLVDSMPLEVCKLSRSSRSKICKENSFSMPNKGFCASQNLHFYGYKLHAICSIAGVFQSFDLSPASVHDIHYLKDIKLQISDCVLLGDRGYLSQTVQLDLFNEVKIQLETPKRKNQKDYKPQFYPFRKCRKRIETLFSQLCDQFMIRRNYAKSFEGFKTRILAKITSLTTIQYLNKFVFHSNINNLKINLIR
>NC_018016.1|WP_014791816.1|2219918_2220578_+|uracil-phosphoribosyltransferase
MTSLKYTDLSENQSILNSWVNELRNVEVQNDRMRFRRNLERIGEVGALEISKTFKYKACEIKTPLGVKPSVELETQPVVMTILRAGLPLYQGVLNYFDHADSGFVAAYRKHNAEGFEIKQDYVTCPDITNRPLIVVDPMLATGASLCEAIHAVLELAQPSELHILCAIAATQGIQKINEELPQAHLWCATVDDKLDEKGYIVPGLGDAGDLCFGPKLQS
>NC_018016.1|WP_014791815.1|2219040_2219694_-|O-methyltransferase
MFKNDILPEDLCQYITAFSSDEPQMLKEIREKTEQEMHQPHMISGVLQGRLLSFLAKMIQPKRILEIGTYTGYATLCLAEGLAPDGKIVTLDRDERAAAFYRPFFAQSAFSHQIEAHLVDAMDFLDQKVDEPWDLVFLDANKKKYREYIEKLLPQMRQGGIILADNVLWKNKVLHEIDSKDKMTQSLHDFNIFVKNDERLEAVMLPIRDGLTLIRKI
>NC_018016.1|WP_014791814.1|2218267_2219044_-|C40-family-peptidase
MNFGICKVSISPVRAEASDRAEMVTQLLFGEKVEILKTKKNWIRIKADFDAYEGWVDEKHLQPIEEAAFFDTETPCYYTTEPFNLVVANNEPTTLPLGAEIRNISNNTFQLGEDTYELYCETKQVEGLISRDELVILAKNYINVPYLWGGKSNFGVDCSGLVQQVYKFTKIHLPRDAKDQAEKGEMLGFVEEALPGDLAFFDNDEGNIIHVGIIIDNQRILHAHGKVRIDPIDSTGIFNTDTQKYSHKLRFVKRILPE
>NC_018016.1|WP_014791813.1|2217453_2218245_+|M15-family-metallopeptidase
MKNNILPLLLVFGLSAQVGCQQKNDTNNAAKNIEIQNFVEVQKAKDTLTFVKPQTNYKDYLVGRTNFAKDSAFVLVPSKYCNKQTYLRKETYEAFLKMHQAAQKAGFNLLIVSGARNFQHQKNIWERKWKANANLTPKERAKKILLFSSMPMSSRHHWGTDVDLNSLNNSYFESGKGKQLYQWMQENAGKYGFCQVFTDKKGGRTGYEMEKWHWSYMPLAKQLLKDYNKQITTKDFKGFLGSETADSVRIIKDYVNGINTCED
>NC_018016.1|WP_014791812.1|2215309_2217337_-|gliding-motility-associated-C-terminal-domain-containing-protein
MKLRYFLMFLFTGSLIWAQNKYPNDCVNYIQVCGNKNISLDVGGVGIRQEIDDRNFCNSHEHNSLWVKVTIKKSGNLGFILRPASRDIEEDYDFWVFGPNPTCYNLGGILRCSTTNPMGAGLYNNFTGLKPSEKDTYEGPANRGNSFVKDIQVKTGESYFIVIDRPHGNSAFTLEWTGDAEIENPMEEVTLNLNLENISLCDPENDGVETFDFESLNQKVTTDTTGLKFSYYASESDATIKNNPLNKHSKIRSGKYWCRVENIATGCFELVNFLIDLEGVKLSPATSTYCLNGKESVNVDLTSFSLSNQEGLKYTYYTRQDDLDNQRNSIQNPEKFVLKKNTKIYVHAQKSSCENNSFIELNVPENPSVKMLEEQVCLNTLEDGKIDLTLYESKINNRKVSFSFFSSKENLEQNKKINNPNQTPINLGKNVFFVKVENEHCSTTTTLTILANDAPKISTVEQSFEYCPEEFPIQISAQDGFARYVWDNKKEKQTLEVSKAGKYSVKIYNEKGCFTEQFFTIKQKKAPEISNIIYENYQIKILSNNTEELLYRINNGKWQEENSFKDLAPGVYQFYIKFKNGCMSAPKEFEFIKLNNVITTIKDGKNDYFYVPKINKGKYKNLKIYNRYGKVIYENPLKQAVKWEGKNLPQGDYWYILQIDDAIYKGNISIINYKK
>NC_018016.1|WP_014791811.1|2214858_2215305_-|DUF302-domain-containing-protein
MKKIIILALSFFMLTACNNSSKNPTMNTVESKFPFEQTLETLKNEIKAKDMGIMQVIRHDELAQKNGLEINPTAVIIFGNPKVGTALMQESPAIAYELPLRFLVYEKDGKTFVLYKSPKEYESLGIKENKPVLDKMQNALQSIAEKVQ
>NC_018016.1|WP_014791810.1|2213493_2214843_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MKSINPFTQETIYEHAELSEAEIIEKIESANVAQPAWNNISLKKRKKIFKKLAEVLEENAYEWGRTISEEMGKPITQSIAEINKCAWVCRYYASNAQKLLKSKHTKTEAQKSYVRYDPLGVILGVMPWNFPFWQVIRFAVPTLMAGNTVLLKHASNVMQSAKNVEKAFELAGLPENCFINLPISSKAVEGIIRHPMVKGVSLTGSKAAGAAVAKVAGEEIKPSLLELGGSNALVVFEDCDIKEAVKTVVNARFQNTGQSCIAGKRLLVHEKIAEKFVAKLQKKVEELVVGNPLEDKTYLSVMARESLAEELEKQMNDSVEMGAKILIGGTRHEAFFAPTILTHVTPEMPVFYEETFGPLLACTTFKTDDEALELVNNSEFGLGASIFTEDKKRIKHFIKNIKDGAVFINEMVKSDPRLAFGGTGISGYGRELAENGIKAFVNEKTVYIA
>NC_018016.1|WP_014791809.1|2212772_2213462_-|ABC-transporter-ATP-binding-protein
MIDIQDLNKSYQMGKNSLHVLKGIDLHVDKGEFVAIMGSSGSGKSTLLNIIGMLDEHDTGTYDLDGVRIEKLSEKKAAHYRNKFLGFIFQSYNLINFKNVVENVALPLYYQNMSRKKRHEIAMHYLDKVGLVPWAKHMPNELSGGQKQRVAIARALAANPKLLLADEPTGALDSVTSQEVMRLIQQINDEGKTILMVTHEDDIAHMCKRIVRLKDGVIIEDEKINQVRV
>NC_018016.1|WP_014791808.1|2211546_2212773_-|ABC-transporter-permease
MFDIDRWAEIWASIRSNKLRTFLSGATIALALFVFITLFGLSKGLQNGFEEQFLPPNMMTIEVYTNYTTLPYKGKQPNRYIQLKKSDYQFLQELLKDRIEIVLPHISQMVSARNFSEFGNYNLIGTTSKEKKASDLKIISGRFLDPLDNQSIEKNVVIGRLVEKDLFKNKSAVGENIQLGNTLYKVVGVYSSEEGDDKERYIYLPINTYHVIYGTQNIDNFTLYPLPNSSLDELHDIAQEVEKELKIKHSVSPDDTRGVRAYDPKDALDSTNMFFYVFTIIVLVIGIGSLISGMVSIANMMVFSVKERTKEIGIRKALGATPFNIISLILQEALAITFLFGFIGIFMGMLLTYSVKDSLQDYMIYNATVESSRIVLAAIILLISGLLAGFIPARKAAKIKPIEALNSN
>NC_018016.1|WP_014791817.1|2223000_2223345_-|CRISPR-associated-endonuclease-Cas2
MEELFTRLNQYRSMWILVSFDLPTETKLDRKRASKFRKQLLEDGFSMFQFSIYMRFCSSRENTEVHIKRVKDILPKHGRVAIFRITDKQFGMTEIFHSTKEVEKPPMYQQLELF
>NC_018016.1|WP_014791818.1|2223349_2224246_-|type-II-CRISPR-associated-endonuclease-Cas1
MLKRTLFFGNPAYLSTRNEQLVVRFPEKEKPERTLPIEDLGVIVLEHPQITITCGLLSKLSLNKVLVVQCDAQHMPASVFQPLSGHTLFSERLKNQLDMSLPLKKNLWQQTVQAKITNQAMHLEKNNIDARKLRRWIQEVKSGDGENHEAYAAAYYFQNIFPIEDFSRNQKGIPPNHWLNYGYAILRAVTARAITASGLLPALGIFHKNKYNAFCLADDLMEPYRPFVDQLINQMLANFELTEELTTTHKAELLKIPSLDVVIDGKKSPLMVAMSHTTSSFYECIEGSRRKIAYPEFC
>NC_018016.1|WP_014791819.1|2224245_2228853_-|hypothetical-protein
MNTILGLDLGTNSIGWALIKVLNDKTRLPLEIIDLGVVVIPTDQRTLDKFSKGESISKTAERTKQKGVRKLYERKKLRRERLHRVLNILGFLPEHYSKKIDFKKHLGQFFGNSQPKISYVENDHGKHEFIFMDSYREMLKEFSKHNIKNVPYDWTIYYLRKKALSQKISKEELAWVILNFNKKRGYYQFRDDNADENKENKIEKYYALKVTNVKKEDAQNYTITLENGWIYKNKSKISLLDWVGSTKEFISTEKFDNKGNIIKKKNGEDDRTLKLVDSEKDWIAIKKSTEDRIENYGKTVGTYLYEHLLKDPNQKLNGELINIIDRKFYKNELKQILEKQKEFHPELLNEDLFQKSIIELYPKNSTRQKELKNKDLCYLLIDDVIYYQRDLKKKNSTINKCSFESREYYLNGEKQIQKINCIAKSKPLYQEFRTLQFIKNLKVYEIIDGLEKDITSKLLPDFETKEHFFEWLNDKEKIDQLQLLSYKCFDLHDNVKNDLIAKGIKRPTEKAIRTELLEKYRWNYSKDNDRNFLLNETRFKILKYLKKVDKKLTLTNEQIESLWLLLYSAKDERELKNGLQKFSEKNKLPKKFSDIFISFPPFKKEYGAYSEKALKKLLSLVRFGKYWSFNKIDNNIQNKIMNILNGEVDDSISDRVREKTILLQDKNDFQDLPLWLASYVAYNRFSEVSEIKYWDSPDKIEFLKQHSIGNPIVEKIINETLKLIKDIWVIHGKSCKNFFSEIHIELSREIKSSSKKRAQITNNNTKNQKLNNLIKSLLIEMASDTKYENVTPYSPSQQEILKIYDEGIYSKEENSEKIKEINKIRNNNKISKSDITKYKLWLEQGYISPYTGKIIPLTKLFTAKYQKEHIIPQTKFFDDSFNNKVICEAEVNKLKDNSLAMNFIKAKGGKAVKLSDGETVTILNQEEYKQLVRTSFKKNSIKLRNLLLEEIPDTFTKRQLNDTKYISKLVLSLLSNIVREKGELESTAKRIVSTNGQITSILRNDWGLNNIWNKLITPRFERLNNINKNKIYGNWENKKGKNVFQINYLNDNLSTLNTKRIDHRHHALDALIVACTTRNHINFLNNQYAKSRNQRHDLRAKLKRRETITTEGSKKQVFKDFIKPWESFTQDALKKLETTIVNFKVNKRIINKTINWYKKWEKQKDGTYKKIQKKQTKGDAWAIRKPLHIDTIYGIVCKKLPLKSALENYKNIIDENLKHKIKELKEVNKFDNNQIINFFKECNFIFEDNNIQKVEVYDFKDNRDKTILSSSRQLIDESFTPKKIGKVLDPTIRNILLKHLNSTKYNNKFDSDGNPIKPEKLAFSPEGLKDLNKNIKHLNNNKEHQPIKRVKLFETLGNKIKVGYTQQKNKKFAETATGTNLFLGIYSDNNKRDFKTIPLILAIQREKEGLNPCPDTDEKGNQLLFSLSPNELVFVPNNEERKNPNLVDFENLSKDQIDRIYKFVSCTGSEAYFVPSRTAKPIIENENGTNNKSQRIIEFNEKTSIKNEKNEPVLIKTICWKIEVNRLGKIIKVIK
>NC_018016.1|WP_014791820.1|2229047_2230517_-|polysaccharide-biosynthesis-protein
MGIIARQSIKYSLVGYLGFALGTLAVIFIFPNDLDFYGKLRYVLSTAEMFLPCVVLGVSFSNVKFFYDAQKVGKHQNFLWVSLLSMIFSFSLFTILFFVANWLFPSIKESAVWEMKSLILPLILILALNAIFNKYISNFKRIAIPNIFENLFPKIANIGAFSLFFYFGLKEKIAYSFFIGMFAFSLLCYVWYAHRLEKLQPDFSLNYLKINQLWKKVINYSLYGFLGNIGHYVALRVDNFMIGELIGFESNGVYSIILAILSFMMIPQMGINSISAPIINQHLEEKNYSELNQFYRDSSFQLFFQGLVIFSCILVGFPYLTELIKNGDKLLAASPILWVLGGAMLFDLATGFNGHIISLSKYYRINIVIMLLLAMLTISLNLIFIKVFNLGLLGVAMATAVSLTVFNLIKITFNWVKFGVFPLSRKMLSSLLLIGSAFSIAYLLPESHYFWINLIYKPLVLIILTIIGNQIFGIFPLVEYLNKFRNKKL
>NC_018016.1|WP_014791821.1|2230723_2231065_+|30S-ribosomal-protein-S6
MNHYETVFILTPVLSDSQVEEAVKKVENFLKERGTEIVHQENWGLRKLAYPIQLKRNGFYHLIEWKGEGNVVADLELMFKRDERVLRYLTVKLDKHGIEWAEDRRKQKASSNK
>NC_018016.1|WP_014791822.1|2231076_2231379_+|30S-ribosomal-protein-S18
MAIDELAKQVEQGGESEIRYLTPIDIETQSTEMFCRFKKFGIKYVDYKDPDFLLQFVNEQGKILPRRYTGTSLKYQRKVAQAIKRARHLALLPFETDLLK
>NC_018016.1|WP_014791823.1|2231398_2231845_+|50S-ribosomal-protein-L9
MQVILTKDVENLGFEFEVVSVKPGYGRNFLIPQGLAKLATPKNIEELNKVLEDRKAHEEALIAEANKIIEAVKGLELVIAAKVGEGDKLFGSVNNADLTDLLNQKGVNVERKHVSILGRNIKRLGSYTAIVKPHRSVQTEISFDIVPE
>NC_018016.1|WP_014791824.1|2231929_2232535_-|Smr/MutS-family-protein
MIHFKIGDKVKVIDDNLSGTVTKVNENEITIETDFGFEMLYEPKELLPDVGMEEEIEFSSPKTTPQKETKKLASKKKKVEKVFDPRAKMPEIKTEKEKVAKKPKKIRKPPLEIDLHYAQLENYDRLLAKNLILARQMNSLKKRVERAREHGYDRVVIIHGKGEGILETEVKKWLNEMGYHFYDADFQRYKLGATEVELPKF
>NC_018016.1|WP_014790218.1|2232667_2232913_+|hypothetical-protein
MQREEIRPFLVVQKFVPIPVNHLEPKQYIYEYGIVVQVLKQENNIEVLFSGRSWITFKPKDILYHRVAVKKEETDFFIESR
>NC_018016.1|WP_014790259.1|2232971_2234135_+|hypothetical-protein
MRQYQEVNNYYLCEKVQLRPTSLLHYSYVMDLRNYEVGYAPTLRQNLNKEKTELDELNALDDISEFGSIVKYAEKCVELYKEKQQEVYNEKGHVLKDLGTLSDTQVRNIKKYAILFADATKSNKDKYLSFVTLTLPSAQKHHDRVLRKILAKYLDHLKKVYGLKNYLWKAETQKNGNIHFHVLIDTQIPREDIQRIWNQYINKYGYVDRYSEKMNRLTAKEYMAKYSKNYKSEKDCILAYQRNKKMGWSNPPSTKIETPKSKRNIVAYVVKYLLKQEENKRPVIGAVWGASNKVKKLNYLNFEVSSYLEELNHLRGKLEYVPTAIQFVELYKGKVYQMIRKGYKKLNEHLKIYNKAIRQLLDTDLSINLDQLIQLIYEKQYTELANN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_018016_2	2.1\|1241265\|26\|NC_018016\|CRISPRCasFinder	1241265-1241290	26	MN856005	Myoviridae sp. isolate 302, complete genome	18528-18553	4	0.846
NC_018016_2	2.1\|1241265\|26\|NC_018016\|CRISPRCasFinder	1241265-1241290	26	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	396695-396720	5	0.808
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	CP041517	Bacillus aryabhattai strain KNU10 plasmid unnamed1, complete sequence	65051-65080	5	0.833
NC_018016_3	3.2\|2221742\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221742-2221771	30	NZ_CP010270	Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence	15091-15120	6	0.8
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	AP019525	Tenacibaculum phage PTm5 DNA, complete genome	117636-117665	6	0.8
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	AP019524	Tenacibaculum phage PTm1 DNA, complete genome	117525-117554	6	0.8
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	MG592666	Vibrio phage 2.096.O._10N.286.48.B5, partial genome	19965-19994	6	0.8
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	MN694016	Marine virus AFVG_250M811, complete genome	2117-2146	6	0.8
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	MN694190	Marine virus AFVG_250M608, complete genome	2055-2084	6	0.8
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	MN693920	Marine virus AFVG_250M810, complete genome	2128-2157	6	0.8
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	MN693800	Marine virus AFVG_250M813, complete genome	2117-2146	6	0.8
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	MN694453	Marine virus AFVG_250M327, complete genome	30886-30915	6	0.8
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	MN694554	Marine virus AFVG_250M812, complete genome	2121-2150	6	0.8
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	NC_021772	Salmonella phage FSL SP-058, complete genome	50358-50387	6	0.8
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	NC_021782	Salmonella phage FSL SP-076, complete genome	44783-44812	6	0.8
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	MN693456	Marine virus AFVG_25M411, complete genome	24746-24775	7	0.767
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	NZ_CP014570	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence	2509-2538	7	0.767
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	NZ_CP015177	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence	248060-248089	7	0.767
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	CP029291	Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed4, complete sequence	6311-6340	7	0.767
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	NC_019349	Lactococcus lactis subsp. cremoris plasmid pAF12, complete sequence	5974-6003	7	0.767
NC_018016_3	3.11\|2222432\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222432-2222461	30	MK250019	Prevotella phage Lak-A2, complete genome	376427-376456	7	0.767
NC_018016_3	3.14\|2222663\|29\|NC_018016\|PILER-CR,CRISPRCasFinder	2222663-2222691	29	NZ_CP021658	Aeromonas salmonicida strain O23A plasmid pO23AP4, complete sequence	40233-40261	7	0.759
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	541438-541467	7	0.767
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	NZ_CP004877	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence	109340-109369	7	0.767
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	146728-146757	7	0.767
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	NZ_CP007616	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence	249291-249320	7	0.767
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	NZ_CP004860	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence	129134-129163	7	0.767
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	MF036692	Serratia phage X20, complete genome	47290-47319	7	0.767
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	MN694632	Marine virus AFVG_250M389, complete genome	26881-26910	7	0.767
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	AP013517	Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S30-C51	31806-31835	7	0.767
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	NZ_CP007625	Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence	105316-105345	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	NZ_CP009650	Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence	122452-122481	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	MT601272	Bacillus phage vB_BsuS-Goe11, complete genome	46242-46271	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	MT366947	Bacillus phage Hyb2phi3Ts-SPbeta, complete genome	44823-44852	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	KY030782	Bacillus phage phi3T, complete genome	44823-44852	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	NC_001884	Bacillus phage SPBc2, complete genome	55334-55363	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	AF020713	Bacteriophage SPBc2 complete genome	55334-55363	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	MT366946	Bacillus phage Hyb1phi3Ts-SPbeta, complete genome	47422-47451	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	MT366948	Bacillus phage Hyb3phi3Ts-SPbeta, complete genome	44823-44852	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	MT601274	Bacillus phage vB_BsuS-Goe13, complete genome	45560-45589	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	CP052843	Bacillus phage Hybphi3Ts, partial sequence	21203-21232	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	MT601273	Bacillus phage vB_BsuS-Goe12, complete genome	45560-45589	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	MT366945	Bacillus phage phi3Ts, complete genome	44823-44852	8	0.733
NC_018016_3	3.4\|2221896\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221896-2221925	30	NC_025249	Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence	12075-12104	8	0.733
NC_018016_3	3.4\|2221896\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221896-2221925	30	NZ_CP041350	Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence	24589-24618	8	0.733
NC_018016_3	3.4\|2221896\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221896-2221925	30	NZ_CP004365	Komagataeibacter xylinus E25 plasmid pGX5, complete sequence	76705-76734	8	0.733
NC_018016_3	3.5\|2221973\|29\|NC_018016\|PILER-CR,CRISPRCasFinder	2221973-2222001	29	KF302032	UNVERIFIED: Pseudoalteromonas phage HS5, complete genome	30039-30067	8	0.724
NC_018016_3	3.5\|2221973\|29\|NC_018016\|PILER-CR,CRISPRCasFinder	2221973-2222001	29	HM588722	Pseudoalteromonas phage H105/1, complete genome	19847-19875	8	0.724
NC_018016_3	3.5\|2221973\|29\|NC_018016\|PILER-CR,CRISPRCasFinder	2221973-2222001	29	KF302033	UNVERIFIED: Pseudoalteromonas phage HS1, complete genome	36254-36282	8	0.724
NC_018016_3	3.12\|2222509\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222509-2222538	30	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	9373-9402	8	0.733
NC_018016_3	3.12\|2222509\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222509-2222538	30	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	163006-163035	8	0.733
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	LR214967	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 13	14271-14300	8	0.733
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	LR214967	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 13	34363-34392	8	0.733
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	MF036691	Serratia phage CBH8, complete genome	47464-47493	8	0.733
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	AP013616	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26C-MedDCM-OCT-S40-C87, * SEQUENCING IN PROGRESS *	18925-18954	8	0.733
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	AP013614	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26B-MedDCM-OCT-S33-C167, * SEQUENCING IN PROGRESS *	1969-1998	8	0.733
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	MF036690	Serratia phage CHI14, complete genome	47464-47493	8	0.733
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	AP013553	Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C26B-MedDCM-OCT-S35-C55, * SEQUENCING IN PROGRESS *, 4 ordered pieces	11610-11639	8	0.733
NC_018016_3	3.3\|2221819\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2221819-2221848	30	MN694082	Marine virus AFVG_250M1102, complete genome	38031-38060	9	0.7
NC_018016_3	3.6\|2222049\|29\|NC_018016\|PILER-CR,CRISPRCasFinder	2222049-2222077	29	NC_016571	Pseudomonas phage OBP, complete genome	142827-142855	9	0.69
NC_018016_3	3.7\|2222125\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222125-2222154	30	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	914241-914270	9	0.7
NC_018016_3	3.12\|2222509\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222509-2222538	30	MG878892	Salmonella phage vB_SpuP_Spp16, complete genome	31592-31621	9	0.7
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	KF669663	Bacillus phage Staley, complete genome	11495-11524	9	0.7
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	AP014488	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S45-C60, * SEQUENCING IN PROGRESS *, 7 ordered pieces	25266-25295	9	0.7
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	AP014487	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S34-C76, * SEQUENCING IN PROGRESS *, 2 ordered pieces	20334-20363	9	0.7
NC_018016_3	3.15\|2222739\|30\|NC_018016\|PILER-CR,CRISPRCasFinder	2222739-2222768	30	AP014093	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S29-C126, * SEQUENCING IN PROGRESS *	5305-5334	9	0.7

1. spacer 2.1|1241265|26|NC_018016|CRISPRCasFinder matches to MN856005 (Myoviridae sp. isolate 302, complete genome) position: , mismatch: 4, identity: 0.846

cggcattaagttgcttttaaaatgta	CRISPR spacer
tggcatgaagttgcttttcaaatgtc	Protospacer
.***** *********** ******

2. spacer 2.1|1241265|26|NC_018016|CRISPRCasFinder matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 5, identity: 0.808

cggcattaagttgcttttaaaatgta	CRISPR spacer
tttcatttacttgcttttaaaatgta	Protospacer
.  **** * ****************

3. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to CP041517 (Bacillus aryabhattai strain KNU10 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
ggggaagcactaactaaattaaaagaacag	Protospacer
*.*.****** *.****************.

4. spacer 3.2|2221742|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP010270 (Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence) position: , mismatch: 6, identity: 0.8

cgaagggatcacaggattaaacttaggtta	CRISPR spacer
cgaatggatcaaaggattaaacttactcca	Protospacer
**** ****** *************  ..*

5. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to AP019525 (Tenacibaculum phage PTm5 DNA, complete genome) position: , mismatch: 6, identity: 0.8

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
tgtctagtaattaaaatagattaaaaatga	Protospacer
* * *.  *********************.

6. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to AP019524 (Tenacibaculum phage PTm1 DNA, complete genome) position: , mismatch: 6, identity: 0.8

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
tgtctagtaattaaaatagattaaaaatga	Protospacer
* * *.  *********************.

7. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MG592666 (Vibrio phage 2.096.O._10N.286.48.B5, partial genome) position: , mismatch: 6, identity: 0.8

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
caaattgcagaaactaaattaaaagaacaa	Protospacer
 *.*  *** **.*****************

8. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MN694016 (Marine virus AFVG_250M811, complete genome) position: , mismatch: 6, identity: 0.8

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gaagaagcaaaagctaaattaaatgaaaat	Protospacer
**..***** ************* *** *

9. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MN694190 (Marine virus AFVG_250M608, complete genome) position: , mismatch: 6, identity: 0.8

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gaagaagcaaaagctaaattagaagaaaat	Protospacer
**..***** ***********.***** *

10. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MN693920 (Marine virus AFVG_250M810, complete genome) position: , mismatch: 6, identity: 0.8

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gaagaagcaaaagctaaattaaatgaaaat	Protospacer
**..***** ************* *** *

11. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MN693800 (Marine virus AFVG_250M813, complete genome) position: , mismatch: 6, identity: 0.8

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gaagaagcaaaagctaaattaaatgaaaat	Protospacer
**..***** ************* *** *

12. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MN694453 (Marine virus AFVG_250M327, complete genome) position: , mismatch: 6, identity: 0.8

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gatgaagcaaaagctaaattaaatgaaaat	Protospacer
** .***** ************* *** *

13. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MN694554 (Marine virus AFVG_250M812, complete genome) position: , mismatch: 6, identity: 0.8

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gaagaagcaaaagctaaattaaatgaaaat	Protospacer
**..***** ************* *** *

14. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NC_021772 (Salmonella phage FSL SP-058, complete genome) position: , mismatch: 6, identity: 0.8

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gagaaagtccaagctaaattaaatggtgaa	Protospacer
*******. ************** *.  **

15. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NC_021782 (Salmonella phage FSL SP-076, complete genome) position: , mismatch: 6, identity: 0.8

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gagaaagtccaagctaaattaaatggtgaa	Protospacer
*******. ************** *.  **

16. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MN693456 (Marine virus AFVG_25M411, complete genome) position: , mismatch: 7, identity: 0.767

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
acaaggtaaattaaaagagtttaaaaatgc	Protospacer
 . * *********** ** *********

17. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP014570 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp2, complete sequence) position: , mismatch: 7, identity: 0.767

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
tctccttaaattaaatttgattaaaaatgt	Protospacer
*.* . ********* * ***********

18. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP015177 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence) position: , mismatch: 7, identity: 0.767

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
catctaaaaattaaaacagattaaaagtgg	Protospacer
. * *. *********.*********.***

19. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to CP029291 (Lactococcus lactis subsp. lactis KLDS 4.0325 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
attatataaattaaaagagattaagtaatg	Protospacer
 ****.********** *******. *  *

20. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NC_019349 (Lactococcus lactis subsp. cremoris plasmid pAF12, complete sequence) position: , mismatch: 7, identity: 0.767

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
attatataaattaaaagagattaagtaatg	Protospacer
 ****.********** *******. *  *

21. spacer 3.11|2222432|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 7, identity: 0.767

---aaacttgaaaagattcgtttagactattta	CRISPR spacer
agggaatt---aaaaattcgtttagactatttc	Protospacer
   .**.*   ***.*****************

22. spacer 3.14|2222663|29|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP021658 (Aeromonas salmonicida strain O23A plasmid pO23AP4, complete sequence) position: , mismatch: 7, identity: 0.759

atcttctcgattaattaataacctcatac	CRISPR spacer
gactcagcgatttattaataacctcatag	Protospacer
. **.  ***** ***************

23. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 7, identity: 0.767

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gcatttacacaagctaaattaaaagaaaaa	Protospacer
* .   .******************** **

24. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP004877 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB431, complete sequence) position: , mismatch: 7, identity: 0.767

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
aaaaaagcaaaagctgaattaaaagaaatt	Protospacer
.*.****** *****.***********

25. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 7, identity: 0.767

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
aaaaaagcaaaagctgaattaaaagaaatt	Protospacer
.*.****** *****.***********

26. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP007616 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB400, complete sequence) position: , mismatch: 7, identity: 0.767

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
aaaaaagcaaaagctgaattaaaagaaatt	Protospacer
.*.****** *****.***********

27. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP004860 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB422, complete sequence) position: , mismatch: 7, identity: 0.767

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
aaaaaagcaaaagctgaattaaaagaaatt	Protospacer
.*.****** *****.***********

28. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MF036692 (Serratia phage X20, complete genome) position: , mismatch: 7, identity: 0.767

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
attaaagctcaagcgaaattaaaagaaata	Protospacer
.  ***** ***** ************  *

29. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MN694632 (Marine virus AFVG_250M389, complete genome) position: , mismatch: 7, identity: 0.767

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
aaaaaagcacgagctaaattaaaatcagat	Protospacer
.*.*******.*************  * *

30. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to AP013517 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S30-C51) position: , mismatch: 7, identity: 0.767

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
ggcaaagcacaagctaatttaaacgatgta	Protospacer
*. ************** ***** **   *

31. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP007625 (Bacillus pseudomycoides strain 219298 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
tttatttaaattaatatagattatcatgtt	Protospacer
***** ******** ********  *

32. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP009650 (Bacillus pseudomycoides strain BTZ plasmid pBTZ_1, complete sequence) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
tttatttaaattaatatagattatcatgtt	Protospacer
***** ******** ********  *

33. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MT601272 (Bacillus phage vB_BsuS-Goe11, complete genome) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
atcatgtaaattaaaatacattgaaacaat	Protospacer
 *.*************** ***.***  .

34. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MT366947 (Bacillus phage Hyb2phi3Ts-SPbeta, complete genome) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
atcatgtaaattaaaatacattgaaacaat	Protospacer
 *.*************** ***.***  .

35. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to KY030782 (Bacillus phage phi3T, complete genome) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
atcatgtaaattaaaatacattgaaacaat	Protospacer
 *.*************** ***.***  .

36. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NC_001884 (Bacillus phage SPBc2, complete genome) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
atcatgtaaattaaaatacattgaaacaat	Protospacer
 *.*************** ***.***  .

37. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to AF020713 (Bacteriophage SPBc2 complete genome) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
atcatgtaaattaaaatacattgaaacaat	Protospacer
 *.*************** ***.***  .

38. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MT366946 (Bacillus phage Hyb1phi3Ts-SPbeta, complete genome) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
atcatgtaaattaaaatacattgaaacaat	Protospacer
 *.*************** ***.***  .

39. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MT366948 (Bacillus phage Hyb3phi3Ts-SPbeta, complete genome) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
atcatgtaaattaaaatacattgaaacaat	Protospacer
 *.*************** ***.***  .

40. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MT601274 (Bacillus phage vB_BsuS-Goe13, complete genome) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
atcatgtaaattaaaatacattgaaacaat	Protospacer
 *.*************** ***.***  .

41. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to CP052843 (Bacillus phage Hybphi3Ts, partial sequence) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
atcatgtaaattaaaatacattgaaacaat	Protospacer
 *.*************** ***.***  .

42. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MT601273 (Bacillus phage vB_BsuS-Goe12, complete genome) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
atcatgtaaattaaaatacattgaaacaat	Protospacer
 *.*************** ***.***  .

43. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MT366945 (Bacillus phage phi3Ts, complete genome) position: , mismatch: 8, identity: 0.733

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
atcatgtaaattaaaatacattgaaacaat	Protospacer
 *.*************** ***.***  .

44. spacer 3.4|2221896|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NC_025249 (Lactococcus lactis subsp. cremoris MG1363 plasmid pFI430, complete sequence) position: , mismatch: 8, identity: 0.733

ttatagaatttgaagctgacgaggaatttc	CRISPR spacer
aagaagaatttgaagctgaagagtaattaa	Protospacer
  . *************** *** ****

45. spacer 3.4|2221896|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP041350 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pB, complete sequence) position: , mismatch: 8, identity: 0.733

ttatagaatttgaagctgacgaggaatttc	CRISPR spacer
gcaccaaatttgacgctgacgaggaatctg	Protospacer
 .*. .******* *************.*

46. spacer 3.4|2221896|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP004365 (Komagataeibacter xylinus E25 plasmid pGX5, complete sequence) position: , mismatch: 8, identity: 0.733

ttatagaatttgaagctgacgaggaatttc	CRISPR spacer
gcaccaaatttgacgctgacgaggaatctg	Protospacer
 .*. .******* *************.*

47. spacer 3.5|2221973|29|NC_018016|PILER-CR,CRISPRCasFinder matches to KF302032 (UNVERIFIED: Pseudoalteromonas phage HS5, complete genome) position: , mismatch: 8, identity: 0.724

aaatttcagaagctaagttaacgcacata	CRISPR spacer
caatttcaaacgctaagttaacgcgatcg	Protospacer
 *******.* *************.  ..

48. spacer 3.5|2221973|29|NC_018016|PILER-CR,CRISPRCasFinder matches to HM588722 (Pseudoalteromonas phage H105/1, complete genome) position: , mismatch: 8, identity: 0.724

aaatttcagaagctaagttaacgcacata	CRISPR spacer
caatttcaaaagccaagttaacgcgatcg	Protospacer
 *******.****.**********.  ..

49. spacer 3.5|2221973|29|NC_018016|PILER-CR,CRISPRCasFinder matches to KF302033 (UNVERIFIED: Pseudoalteromonas phage HS1, complete genome) position: , mismatch: 8, identity: 0.724

aaatttcagaagctaagttaacgcacata	CRISPR spacer
caatttcaaacgctaagttaacgcgatcg	Protospacer
 *******.* *************.  ..

50. spacer 3.12|2222509|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 8, identity: 0.733

aatctaaaagagcaaagtgatggaagactg	CRISPR spacer
agcggaaaagagcatagtgctggaagacga	Protospacer
*..  ********* **** ******** .

51. spacer 3.12|2222509|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 8, identity: 0.733

aatctaaaagagcaaagtgatggaagactg	CRISPR spacer
agcggaaaagagcatagtgctggaagacga	Protospacer
*..  ********* **** ******** .

52. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to LR214967 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 13) position: , mismatch: 8, identity: 0.733

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
actaaagcagaagcaaaattaaaagaaatt	Protospacer
.  ****** **** ************

53. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to LR214967 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 13) position: , mismatch: 8, identity: 0.733

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
actaaagcagaagcaaaattaaaagaaatt	Protospacer
.  ****** **** ************

54. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MF036691 (Serratia phage CBH8, complete genome) position: , mismatch: 8, identity: 0.733

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
attaaagctcaagcgaaattaaaagaaatg	Protospacer
.  ***** ***** ************  .

55. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to AP013616 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26C-MedDCM-OCT-S40-C87, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gctgcagcacaagctaaattaacagaattt	Protospacer
*  . ***************** ****.

56. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to AP013614 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C26B-MedDCM-OCT-S33-C167, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gctgcagcacaagctaaattaacagaattt	Protospacer
*  . ***************** ****.

57. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MF036690 (Serratia phage CHI14, complete genome) position: , mismatch: 8, identity: 0.733

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
attaaagctcaagcgaaattaaaagaaatg	Protospacer
.  ***** ***** ************  .

58. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to AP013553 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C26B-MedDCM-OCT-S35-C55, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 8, identity: 0.733

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
gctgcagcacaagctaaattaacagaattt	Protospacer
*  . ***************** ****.

59. spacer 3.3|2221819|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MN694082 (Marine virus AFVG_250M1102, complete genome) position: , mismatch: 9, identity: 0.7

tttatgtaaattaaaatagattaaaaatgg	CRISPR spacer
aggcagtaaattaaaattgattgaaaatac	Protospacer
     ************ ****.*****.

60. spacer 3.6|2222049|29|NC_018016|PILER-CR,CRISPRCasFinder matches to NC_016571 (Pseudomonas phage OBP, complete genome) position: , mismatch: 9, identity: 0.69

caatttcttaattggtgataaccaacacc	CRISPR spacer
ttctttcttaattggtgctaaccattctg	Protospacer
.  ************** ****** . .

61. spacer 3.7|2222125|30|NC_018016|PILER-CR,CRISPRCasFinder matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

aaatggtcagaatgtgacggatgtttatgt	CRISPR spacer
ggtcggtcagcatgtgacggatgttgttac	Protospacer
.. .****** **************  *..

62. spacer 3.12|2222509|30|NC_018016|PILER-CR,CRISPRCasFinder matches to MG878892 (Salmonella phage vB_SpuP_Spp16, complete genome) position: , mismatch: 9, identity: 0.7

aatctaaaagagcaaagtgatggaagactg	CRISPR spacer
gtagtaagagagcaaagtgatagaagagct	Protospacer
.   ***.*************.***** .

63. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to KF669663 (Bacillus phage Staley, complete genome) position: , mismatch: 9, identity: 0.7

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
tgtaatgcacaagctaaattaaaactcgac	Protospacer
 . ** ******************    *

64. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to AP014488 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S45-C60, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 9, identity: 0.7

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
ataaaagaacaagctaaattaaaatctaca	Protospacer
. .**** ****************     *

65. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to AP014487 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S34-C76, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.7

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
ataaaagaacaagctaaattaaaatctaca	Protospacer
. .**** ****************     *

66. spacer 3.15|2222739|30|NC_018016|PILER-CR,CRISPRCasFinder matches to AP014093 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C31A-MedDCM-OCT-S29-C126, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

gagaaagcacaagctaaattaaaagaacaa	CRISPR spacer
ataaaagaacaagctaaattaaaatctaca	Protospacer
. .**** ****************     *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_018016

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection