CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_018019	Corynebacterium pseudotuberculosis Cp162, complete genome	3 crisprs	cas1,cas6e,cas8e,cse2gr11,cas7,cas5,DEDDh,cas3,cas4,WYL,csa3,DinG	0	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_018019_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018019_1

26083-26172

TypeI-E

I-C,I-E,II-B

Consensus_repeat	Method
GGAACTACCTCCGCATACGCGGAGAAAAG	CRISPRCasFinder

1 spacers

cas2,cas1,cas6e,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NC_018019_1

>merge|NC_018019|1|26083-26172|CRISPRCasFinder
GGAACTACCTCCGCATACGCGGAGAAAAGTTTTTAGCGGAGCCTGTGACGGGTTTTGACCAGGAACTACCTCCGCATACGCGGAGAAAAG

>NC_018019|1|1|26083-26172|CRISPRCasFinder
GGAACTACCTCCGCATACGCGGAGAAAAG	TTTTTAGCGGAGCCTGTGACGGGTTTTGACCA
GGAACTACCTCCGCATACGCGGAGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018019.2\|WP_072577703.1\|21084_21345_-\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_014799830.1\|35209_36250_-\|transposase	unknown	unknown	gnl\|CDD\|226202
NC_018019.2\|WP_088238428.1\|21388_22009_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_018019.2\|WP_072577983.1\|30230_30950_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NC_018019.2\|WP_014800849.1\|26190_26562_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NC_018019.2\|WP_014799824.1\|18989_19760_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NC_018019.2\|WP_032802279.1\|25448_25787_-\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_088238427.1\|20703_21051_+\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_088238430.1\|31160_32771_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cls000721_cas8e_CAS-I-E	unknown
NC_018019.2\|WP_072577708.1\|33360_34431_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_018019.2\|WP_088238429.1\|21996_22656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340863
NC_018019.2\|WP_014799823.1\|18391_18928_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NC_018019.2\|WP_014799831.1\|36657_37581_+\|phospholipase-D	unknown	unknown	gnl\|CDD\|176518
NC_018019.2\|WP_014800848.1\|26562_27516_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_018019.2\|WP_014799829.1\|34442_35135_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_018019.2\|WP_014522931.1\|37633_38500_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NC_018019.2\|WP_014366221.1\|17642_18314_-\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_072577707.1\|32767_33361_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NC_018019.2\|WP_072577705.1\|24055_24349_-\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_014366220.1\|16766_17540_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053

Protein	Function_ID	Function_description	E-value
NC_018019.2\|WP_014522931.1\|37633_38500_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.98218e-115
NC_018019.2\|WP_088238428.1\|21388_22009_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.24084e-10
NC_018019.2\|WP_072577983.1\|30230_30950_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	8.73621e-35
NC_018019.2\|WP_014800849.1\|26190_26562_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	2.06968e-20
NC_018019.2\|WP_014799824.1\|18989_19760_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	4.2569e-21
NC_018019.2\|WP_014799830.1\|35209_36250_-\|transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00684081
NC_018019.2\|WP_072577708.1\|33360_34431_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.06996e-79
NC_018019.2\|WP_088238429.1\|21996_22656_-\|hypothetical-protein	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.19801e-15
NC_018019.2\|WP_014799823.1\|18391_18928_+\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	1.3063e-63
NC_018019.2\|WP_014799831.1\|36657_37581_+\|phospholipase-D	gnl\|CDD\|176518	cd08576, GDPD_like_SMaseD_PLD, Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline and lysophosphatidic acid (LPA), which is a multifunctional phospholipid involved in platelet aggregation, endothelial hyperpermeability, and pro-inflammatory responses. Loxosceles spider venoms' SMases D are the principal toxins responsible for dermonecrosis and complement dependent haemolysis induced by spider venom. Due to amino acid substitutions at the entrance to the active-site pocket, some members lack activity. The typical GDPD domain consists of a TIM barrel and a small insertion domain named as the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. Although proteins in this family contain a non-typical GDPD domain which lacks the GDPD-I, their catalytic mechanisms are based on Mg2+-dependent acid-base reactions similar to GDPD proteins. They might be divergent members of the GDPD family. Moreover, this family does not belong to phospholipase D (PLD) superfamily, since it lacks the conserved HKD sequence motif that characterizes the catalytic center of the PLD superfamily. It belongs to the superfamily of PLC-like phosphodiesterases.	1.52349e-88
NC_018019.2\|WP_014800848.1\|26562_27516_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.65845e-72
NC_018019.2\|WP_014799829.1\|34442_35135_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.81819e-27
NC_018019.2\|WP_072577707.1\|32767_33361_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	3.89619e-07
NC_018019.2\|WP_014366220.1\|16766_17540_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	1.35107e-102

>NC_018019.2|WP_032802279.1|25448_25787_-|hypothetical-protein
MTEKYQGPVEGGMMDFYDAITRIEATPSVSVRYGDSGVQDFELEEFLAGLVQEKAVVSDVEAKREFLSWFDEDDEWLDPDWDAPMVEQTVRDLHVFAGLEPKVEIHIPMPPA
>NC_018019.2|WP_072577705.1|24055_24349_-|hypothetical-protein
MLDDYDTVAEFYNSPESFIEKHNLSEGLKKALQADEDRDLADLGIGLRSLHNRHVRTPYDRRILPFDGSGKDARNRDGRLGCNIGRKTQTPHDLILS
>NC_018019.2|WP_088238429.1|21996_22656_-|hypothetical-protein
MTIFKTNPSYRSWFTADMSGEIARQIVFSSMPLLAYSVTHDVKQTGFIAALMALTRFISMLAASWVVDFYPKRRLMVINALCRIVLSASVVVLLITGHMGFISLIAVAIGYGAIGGIFGNLTNAILPFIVDELELKDALSLNETRDSIIQIAAAPLSVFLFSMLRALPFIVEIMGFAIVAIGARYIHGVIDAEHSNELSPGITHTLQEFWGAAPLECDG
>NC_018019.2|WP_088238428.1|21388_22009_-|MFS-transporter
MRWVAHHHGIRAILALMTLNGLSSFLVINTVELNILDSDQPVWHVGAVFACFSAGMVCGGIISGPLRKAFSNHQIIIITSTISTITMACLSIMDHWMIVGTLLAVWTLPVIANNAVLGASQMIATPAKLQGRVGAAFGLIIGLTPILGASSAGLLLDNLGWQFTIMLATGIGIGGLTIAIFSQALREIINEQNSPQHSSGGRASKS
>NC_018019.2|WP_072577703.1|21084_21345_-|hypothetical-protein
MDYSEFRFLQMIMSNPTPPIIKNRAGITRPATEAPVRARRRFAGGLGAASSGLLEAIDGVAGGGTDVLVVVGGTGGISGSSGSSWQ
>NC_018019.2|WP_088238427.1|20703_21051_+|hypothetical-protein
MAERSVVALRSLAPVARGRGSKGGFTIEKIVSGERTSKQFSFAWSCTSQGKEMKSGTIKLTNGDVHHEKQLDKDASCVIKEEDADAASEKKHSLKWSVDSEEKRRGVRNHIHQAA
>NC_018019.2|WP_014799824.1|18989_19760_+|rhomboid-family-intramembrane-serine-protease
MFHENGGMSDPRILHAAYKQAPVTVLLSLSTLIIFLITAFQSQSITDNLYDSWIGTHWILYTPEMHEPLGMLRAIGSMFLHIGPGHLAINIFLLFFLGREIEQCIGSALFCAAYFISGLGASLMIMIMDPLSPTAGASGAIYGLMAIMVAIAVTRKTDIRAPLILVAVNVGYSLIADNVSLWGHIGGLIAGSVVALPLMAFHRKHVIAGGTGGFLVYGTPRNHHAFTKDRLITWSVVAAIVVCEAIGIWIVGMKLL
>NC_018019.2|WP_014799823.1|18391_18928_+|peptidylprolyl-isomerase
MMVRMTLKTATAILHTNRGDVAIELFGNHASKTVENFVTLADGSADYKTENASGTTEGPFYDGAVFHRIIDGFMIQGGDPTGTGRGGPGYMFADEFHPELQFDRPFLLAMANAGPGTNGSQFFITVVPTPHLNNHHTIFGEVTDPASQKVVMDIAQTATDRMDRPVEPVVIESVEITE
>NC_018019.2|WP_014366221.1|17642_18314_-|hypothetical-protein
MNSSTIRGAILVTKAAYDKYANYRDRKTREAYDALLNAADSYDDIHKDVKANVTEFYDQSQERVSSLTEQARKRLDSAIADAAAAKDNTVKTVNKKSKKAQKAARKAAKSAKKSAAPKKQPSFGKRLFNFSVFTTILATIGAVAYYFLSKRDVVSTEPPHVEDFGADSVNTEESRLVYSTQTPVDDEEEHVSSPEEGATERDEKLLGSLEDQLRQHTDSKDTK
>NC_018019.2|WP_014366220.1|16766_17540_+|sugar-ABC-transporter-ATP-binding-protein
MDMSTTPIIELRDITKSYGAFDALRGVNLSVASGEVTCVLGDNGAGKSTLIKILSGLHKQSSGELLIDGQPVTFSGPREALDNGIATVHQNLAVVGQMSVWRNFFLGQELTGFLGRLRESEMRSIAQEQLKTMGIDLPDIDVEVESLSGGQRQVVAIARAVYFGARVIILDEPTAALGVKQSGMVLRFVAAARDKGLGVVLITHNPHHAYLVGDRFTILNLGNQILNASRDQVTLEQLTQQMAGGGELEALSHELSR
>NC_018019.2|WP_014800849.1|26190_26562_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MFAVIQGHNLPNHLNGYLSRFLSEVDAGLYVGVLSRAVMENLWEKCQSVDLAGSLTLIHPQYDAEQGFRIRTTGKQRRPVVNLDGLFLSARGLIEDVRFADPLDEADAIIPDEVLEDFCPESE
>NC_018019.2|WP_014800848.1|26562_27516_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSYSNEALAFSTIPASEQIRLEDRVSFLYLEYCLIRQDRTGVIAVSRGDEKAPAELKDLPIKARIQLPVGGIAVIMLGPGTSISQPAATSCARAGVSVLFTGGGGVQAYSLSTPLTSSARWAIAQARLASNEAKQRTAARILYKRQLGIEEIEADSIAVMRGIEGRTIRNLYKRLSAKYKIKNFKRDTNATDPVNTNLNLGNSILYGCAASACAALGINPALGIIHRGDIRSLLFDLADLYKPTLTIPAAFKCANNDDDGSEFRRLVRSEIVKQDLLKNMIHIMMEILAPYLPERTDDRLIGGRNREVPGHTQYGGK
>NC_018019.2|WP_072577983.1|30230_30950_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MPKATYWTHFPAHIALNKSLILGDFATENSKNKPHWDIDDPVFRHRAVMALFPEHQSDNARADSNILFRLEVLPGQEPYFFIQSSIKPSNHNLDKHIETRQVDLMSPEAGTPIEFRLSINAVRRKTIDAVKDTKDAKRKIKTTCLPLDALSSDPTETSAGQWVKEKLSPALENIDIVRHGRQVLGANRNGKKTSTRTVQVDTIDGFAHVKDPAELQKILIHGIGRAKSYGCGMLTFRPI
>NC_018019.2|WP_088238430.1|31160_32771_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKSNVFKDFPFIKTNKGPMTVEEFFHSSHEKSLHLDLSIPGYEYGAIWRLLTSLTAVLVQRDPLFLRGKETSSELRFDPEFISQILDDLGSKISLTEGKNLFFQRPLLEGENPKDTARYVGPGKDPAWKLSPTAPSEKSQIYWNLEKLKPESLEAVDAIVALMVFSMYSFTGNSKYDGAKCLNGSPGIRFLGGGNTATEFIIEAQTPLLSLLKSIPLEWCEPGGLPAWLDRTGAESRNPNGEMHPLWRATWSSNTAACCWDGETLVGVGIGGIPPEWYALEMGSKPEARKEWWDQRNTEDPFYFYQPDKGGVLKAKRLDLSRDLTELAVEWVAEDLSTALAERVRGRALRVDFKEDSLLFIRHQIGGNASSAMIRESVVSQARKQQWVFDPTGALQKQVRGKADFILSLRNIVLSPFRRENKSDRDRGRRVLDSLASERPKMNETFWREIAPIYEEFILYFTEQVSGDETRKEVRAQAKKTLKELEKDAVSTAQKAFDMVLEPYLLQNPSQAYEVRRRIHSYLASKLSETNEGDKK
>NC_018019.2|WP_072577707.1|32767_33361_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTTSRPKQSWTPLVAEFAQRKKDKEFRAKRSALRAGAGTYTEFRAYSYVLPFLGEKASATQRTALLRCMAALAEYPDVVSSGEKATASSVGQWVNRVAFDGKQGQSEPDSMVASRIKYLHTQDLEEAISSLRRIMAFADRKNVTTKLNPYQFVELFWYWGNGFTDASTKHRLSVLRDFYSTKQKENTDPQSSSEGEK
>NC_018019.2|WP_072577708.1|33360_34431_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRHLTIHVVASVPYSNLNRDDSGTPKNVRRGGVTCALLSSQSIKKGIRTKYEDASLDTSVRSGRIADDVLERAKVLAPEADTKALEKAVKKIIGTLTKVAEANESEGESDRSIWLSAEELEAAAVSVVEQAEKKDFIEDGRTGSLAIAAFGRMFAAAPKKGTEAALSVSPAVTTHGVTIATDYFSTIDDIRERNRDVAGATYLGVAQYTTGVFYRTVTIDKEQLRESWTGLDREDAKENLAALVNAIIYGLPRGKQRSTAPFVQPALILAEEQSYRCAYDFESPVQADAREGGYLKPTMEELKRQYDSARAFDADNFGETQVVSGTYPEVSEFFAGAKYADKNGFIDEVVAWIQR
>NC_018019.2|WP_014799829.1|34442_35135_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTTTSVYLRLAGPLQSWAGPAVTGNFVRTAPIPTHSALVGLIAGAFGYRRDEWPDWLDRLSFRVRVDHPGKFVDDFQTVSAHEEEMLFRERLIFATGKRPSAKTTRLTPDGRGMTSIIQRTYLAEAEFIVEVASDTHGELLRDALRAPKFSTYLGRKAFAPAFPFFLGATADVDVLHRIPACDLSGTKRDTARVQIHHRSAGLQTSAEHINVPAVQERSDWLEKTKALFT
>NC_018019.2|WP_014799830.1|35209_36250_-|transposase
MIMASHPYRNHCNVCGNLLKKNGKTSTGKTRYRCKGCGASSTATRSGTLHQRQMKDFITWLLGPTSRYNNDISRAQRRSMSWCWQVPVPQPEMLDNAYILVMDKGASFRPEHLLVAYNSSHVLGWKWVDKDNKTACMQVHAHFPQPSAAVIDGGQSTAQTIQAIWPGIPVRRCLSHIRKSVDQKTSQTPRTQPAIEIKELTDSLKNVYTSEQAKLWLTRYARWEDRWKELLKHRTNVSKDNCSIDGYEWEWTHKELRTIRFMYRKLIKKEELFFPFSGSDIVAHNVILSRRDSQLGETISTDITNLFSAHRGINHDHGCRMVEWYLNSKTESPFIPERIISHDHWR
>NC_018019.2|WP_014799831.1|36657_37581_+|phospholipase-D
MREKVVLFLSIIMAIMLPVGNAAAAPVAHNPASTANRPVYAIAHRVLTTQGVDDAVAIGANALEIDFTAWGRGWWADHDGIPTSAGATAEEIFKHIADKRKQGANITFTWLDIKNPDYCRDARSVCSINALRDLARKYLEPAGIRVLYGFYKTVGGPAWKTITADLRDGEAVALSGPAQDVLNDFARSENKILTKQKIADYGYYDINQGFGNCYGTWNRTCDQLRKSSEARDQGKLGKTFGWTIATGQDARVNDLLEKANVDGLIFGFKITHFYRHADTENSFKAIKRWVDKHSATHHLATVSDNPW
>NC_018019.2|WP_014522931.1|37633_38500_-|ABC-transporter-ATP-binding-protein
MHTPKTTSTDLPTTAGISTDHMSALRTENVTLSWDKHVVSTDLSVDIPTGKFTAIIGPNGCGKSTLLKSCARILAPDTGSIYLNQHNLTHLHTKEIAKQLALLPQSTITPTDITVEELVRRGRFPHHNWLHQWTAEDTRAVDAALNAASVKELTHKRVTDLSGGQRQRVWLAMVLAQNTPTVLLDEPTTFLDIAHQYQLLELARSLTTQLNRTVVAVLHDLQQAVRYADHLIVMKNGSIVATGSPQEVISAELISEVFNITVRTMLIDDQLIVIPTELPVPNVAMMQG

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Crispr_ID: NC_018019_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018019_2

31001-31072

TypeI-E

Consensus_repeat	Method
TTCCTCGCGTCCTGCGGGGGTAG	CRISPRCasFinder

1 spacers

cas6e,cas1,cas2,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NC_018019_2

>merge|NC_018019|2|31001-31072|CRISPRCasFinder
TTCCTCGCGTCCTGCGGGGGTAGTTCATGTTAGGTTTTCGGGTTGACTTTTCCTCGCGTCCTGCGGGGGTAA

>NC_018019|2|2|31001-31072|CRISPRCasFinder
TTCCTCGCGTCCTGCGGGGGTAG	TTCATGTTAGGTTTTCGGGTTGACTT
TTCCTCGCGTCCTGCGGGGGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_018019.2\|WP_072577703.1\|21084_21345_-\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_014799830.1\|35209_36250_-\|transposase	unknown	unknown	gnl\|CDD\|226202
NC_018019.2\|WP_088238428.1\|21388_22009_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NC_018019.2\|WP_072577983.1\|30230_30950_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NC_018019.2\|WP_014800849.1\|26190_26562_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NC_018019.2\|WP_014799824.1\|18989_19760_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NC_018019.2\|WP_032802279.1\|25448_25787_-\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_088238427.1\|20703_21051_+\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_088238430.1\|31160_32771_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cls000721_cas8e_CAS-I-E	unknown
NC_018019.2\|WP_072577708.1\|33360_34431_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_018019.2\|WP_088238429.1\|21996_22656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340863
NC_018019.2\|WP_014799834.1\|40608_41661_+\|iron-siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NC_018019.2\|WP_014799831.1\|36657_37581_+\|phospholipase-D	unknown	unknown	gnl\|CDD\|176518
NC_018019.2\|WP_041481155.1\|39494_40562_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182464
NC_018019.2\|WP_014800848.1\|26562_27516_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_018019.2\|WP_014799829.1\|34442_35135_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_018019.2\|WP_014799832.1\|38508_39495_-\|membrane-protein	unknown	unknown	gnl\|CDD\|182463
NC_018019.2\|WP_072577707.1\|32767_33361_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NC_018019.2\|WP_072577705.1\|24055_24349_-\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_014522931.1\|37633_38500_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045

Protein	Function_ID	Function_description	E-value
NC_018019.2\|WP_014522931.1\|37633_38500_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.98218e-115
NC_018019.2\|WP_088238428.1\|21388_22009_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.24084e-10
NC_018019.2\|WP_072577983.1\|30230_30950_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	8.73621e-35
NC_018019.2\|WP_014800849.1\|26190_26562_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	2.06968e-20
NC_018019.2\|WP_014799824.1\|18989_19760_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	4.2569e-21
NC_018019.2\|WP_014799830.1\|35209_36250_-\|transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00684081
NC_018019.2\|WP_072577708.1\|33360_34431_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.06996e-79
NC_018019.2\|WP_088238429.1\|21996_22656_-\|hypothetical-protein	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.19801e-15
NC_018019.2\|WP_014799834.1\|40608_41661_+\|iron-siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	3.60372e-81
NC_018019.2\|WP_014799831.1\|36657_37581_+\|phospholipase-D	gnl\|CDD\|176518	cd08576, GDPD_like_SMaseD_PLD, Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline and lysophosphatidic acid (LPA), which is a multifunctional phospholipid involved in platelet aggregation, endothelial hyperpermeability, and pro-inflammatory responses. Loxosceles spider venoms' SMases D are the principal toxins responsible for dermonecrosis and complement dependent haemolysis induced by spider venom. Due to amino acid substitutions at the entrance to the active-site pocket, some members lack activity. The typical GDPD domain consists of a TIM barrel and a small insertion domain named as the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. Although proteins in this family contain a non-typical GDPD domain which lacks the GDPD-I, their catalytic mechanisms are based on Mg2+-dependent acid-base reactions similar to GDPD proteins. They might be divergent members of the GDPD family. Moreover, this family does not belong to phospholipase D (PLD) superfamily, since it lacks the conserved HKD sequence motif that characterizes the catalytic center of the PLD superfamily. It belongs to the superfamily of PLC-like phosphodiesterases.	1.52349e-88
NC_018019.2\|WP_041481155.1\|39494_40562_-\|ABC-transporter-permease	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	5.03309e-86
NC_018019.2\|WP_014800848.1\|26562_27516_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.65845e-72
NC_018019.2\|WP_014799829.1\|34442_35135_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.81819e-27
NC_018019.2\|WP_072577707.1\|32767_33361_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	3.89619e-07
NC_018019.2\|WP_014799832.1\|38508_39495_-\|membrane-protein	gnl\|CDD\|182463	PRK10440, PRK10440, iron-enterobactin ABC transporter permease.	5.68076e-96

>NC_018019.2|WP_072577983.1|30230_30950_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MPKATYWTHFPAHIALNKSLILGDFATENSKNKPHWDIDDPVFRHRAVMALFPEHQSDNARADSNILFRLEVLPGQEPYFFIQSSIKPSNHNLDKHIETRQVDLMSPEAGTPIEFRLSINAVRRKTIDAVKDTKDAKRKIKTTCLPLDALSSDPTETSAGQWVKEKLSPALENIDIVRHGRQVLGANRNGKKTSTRTVQVDTIDGFAHVKDPAELQKILIHGIGRAKSYGCGMLTFRPI
>NC_018019.2|WP_014800848.1|26562_27516_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSYSNEALAFSTIPASEQIRLEDRVSFLYLEYCLIRQDRTGVIAVSRGDEKAPAELKDLPIKARIQLPVGGIAVIMLGPGTSISQPAATSCARAGVSVLFTGGGGVQAYSLSTPLTSSARWAIAQARLASNEAKQRTAARILYKRQLGIEEIEADSIAVMRGIEGRTIRNLYKRLSAKYKIKNFKRDTNATDPVNTNLNLGNSILYGCAASACAALGINPALGIIHRGDIRSLLFDLADLYKPTLTIPAAFKCANNDDDGSEFRRLVRSEIVKQDLLKNMIHIMMEILAPYLPERTDDRLIGGRNREVPGHTQYGGK
>NC_018019.2|WP_014800849.1|26190_26562_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MFAVIQGHNLPNHLNGYLSRFLSEVDAGLYVGVLSRAVMENLWEKCQSVDLAGSLTLIHPQYDAEQGFRIRTTGKQRRPVVNLDGLFLSARGLIEDVRFADPLDEADAIIPDEVLEDFCPESE
>NC_018019.2|WP_032802279.1|25448_25787_-|hypothetical-protein
MTEKYQGPVEGGMMDFYDAITRIEATPSVSVRYGDSGVQDFELEEFLAGLVQEKAVVSDVEAKREFLSWFDEDDEWLDPDWDAPMVEQTVRDLHVFAGLEPKVEIHIPMPPA
>NC_018019.2|WP_072577705.1|24055_24349_-|hypothetical-protein
MLDDYDTVAEFYNSPESFIEKHNLSEGLKKALQADEDRDLADLGIGLRSLHNRHVRTPYDRRILPFDGSGKDARNRDGRLGCNIGRKTQTPHDLILS
>NC_018019.2|WP_088238429.1|21996_22656_-|hypothetical-protein
MTIFKTNPSYRSWFTADMSGEIARQIVFSSMPLLAYSVTHDVKQTGFIAALMALTRFISMLAASWVVDFYPKRRLMVINALCRIVLSASVVVLLITGHMGFISLIAVAIGYGAIGGIFGNLTNAILPFIVDELELKDALSLNETRDSIIQIAAAPLSVFLFSMLRALPFIVEIMGFAIVAIGARYIHGVIDAEHSNELSPGITHTLQEFWGAAPLECDG
>NC_018019.2|WP_088238428.1|21388_22009_-|MFS-transporter
MRWVAHHHGIRAILALMTLNGLSSFLVINTVELNILDSDQPVWHVGAVFACFSAGMVCGGIISGPLRKAFSNHQIIIITSTISTITMACLSIMDHWMIVGTLLAVWTLPVIANNAVLGASQMIATPAKLQGRVGAAFGLIIGLTPILGASSAGLLLDNLGWQFTIMLATGIGIGGLTIAIFSQALREIINEQNSPQHSSGGRASKS
>NC_018019.2|WP_072577703.1|21084_21345_-|hypothetical-protein
MDYSEFRFLQMIMSNPTPPIIKNRAGITRPATEAPVRARRRFAGGLGAASSGLLEAIDGVAGGGTDVLVVVGGTGGISGSSGSSWQ
>NC_018019.2|WP_088238427.1|20703_21051_+|hypothetical-protein
MAERSVVALRSLAPVARGRGSKGGFTIEKIVSGERTSKQFSFAWSCTSQGKEMKSGTIKLTNGDVHHEKQLDKDASCVIKEEDADAASEKKHSLKWSVDSEEKRRGVRNHIHQAA
>NC_018019.2|WP_014799824.1|18989_19760_+|rhomboid-family-intramembrane-serine-protease
MFHENGGMSDPRILHAAYKQAPVTVLLSLSTLIIFLITAFQSQSITDNLYDSWIGTHWILYTPEMHEPLGMLRAIGSMFLHIGPGHLAINIFLLFFLGREIEQCIGSALFCAAYFISGLGASLMIMIMDPLSPTAGASGAIYGLMAIMVAIAVTRKTDIRAPLILVAVNVGYSLIADNVSLWGHIGGLIAGSVVALPLMAFHRKHVIAGGTGGFLVYGTPRNHHAFTKDRLITWSVVAAIVVCEAIGIWIVGMKLL
>NC_018019.2|WP_088238430.1|31160_32771_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKSNVFKDFPFIKTNKGPMTVEEFFHSSHEKSLHLDLSIPGYEYGAIWRLLTSLTAVLVQRDPLFLRGKETSSELRFDPEFISQILDDLGSKISLTEGKNLFFQRPLLEGENPKDTARYVGPGKDPAWKLSPTAPSEKSQIYWNLEKLKPESLEAVDAIVALMVFSMYSFTGNSKYDGAKCLNGSPGIRFLGGGNTATEFIIEAQTPLLSLLKSIPLEWCEPGGLPAWLDRTGAESRNPNGEMHPLWRATWSSNTAACCWDGETLVGVGIGGIPPEWYALEMGSKPEARKEWWDQRNTEDPFYFYQPDKGGVLKAKRLDLSRDLTELAVEWVAEDLSTALAERVRGRALRVDFKEDSLLFIRHQIGGNASSAMIRESVVSQARKQQWVFDPTGALQKQVRGKADFILSLRNIVLSPFRRENKSDRDRGRRVLDSLASERPKMNETFWREIAPIYEEFILYFTEQVSGDETRKEVRAQAKKTLKELEKDAVSTAQKAFDMVLEPYLLQNPSQAYEVRRRIHSYLASKLSETNEGDKK
>NC_018019.2|WP_072577707.1|32767_33361_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTTSRPKQSWTPLVAEFAQRKKDKEFRAKRSALRAGAGTYTEFRAYSYVLPFLGEKASATQRTALLRCMAALAEYPDVVSSGEKATASSVGQWVNRVAFDGKQGQSEPDSMVASRIKYLHTQDLEEAISSLRRIMAFADRKNVTTKLNPYQFVELFWYWGNGFTDASTKHRLSVLRDFYSTKQKENTDPQSSSEGEK
>NC_018019.2|WP_072577708.1|33360_34431_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRHLTIHVVASVPYSNLNRDDSGTPKNVRRGGVTCALLSSQSIKKGIRTKYEDASLDTSVRSGRIADDVLERAKVLAPEADTKALEKAVKKIIGTLTKVAEANESEGESDRSIWLSAEELEAAAVSVVEQAEKKDFIEDGRTGSLAIAAFGRMFAAAPKKGTEAALSVSPAVTTHGVTIATDYFSTIDDIRERNRDVAGATYLGVAQYTTGVFYRTVTIDKEQLRESWTGLDREDAKENLAALVNAIIYGLPRGKQRSTAPFVQPALILAEEQSYRCAYDFESPVQADAREGGYLKPTMEELKRQYDSARAFDADNFGETQVVSGTYPEVSEFFAGAKYADKNGFIDEVVAWIQR
>NC_018019.2|WP_014799829.1|34442_35135_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTTTSVYLRLAGPLQSWAGPAVTGNFVRTAPIPTHSALVGLIAGAFGYRRDEWPDWLDRLSFRVRVDHPGKFVDDFQTVSAHEEEMLFRERLIFATGKRPSAKTTRLTPDGRGMTSIIQRTYLAEAEFIVEVASDTHGELLRDALRAPKFSTYLGRKAFAPAFPFFLGATADVDVLHRIPACDLSGTKRDTARVQIHHRSAGLQTSAEHINVPAVQERSDWLEKTKALFT
>NC_018019.2|WP_014799830.1|35209_36250_-|transposase
MIMASHPYRNHCNVCGNLLKKNGKTSTGKTRYRCKGCGASSTATRSGTLHQRQMKDFITWLLGPTSRYNNDISRAQRRSMSWCWQVPVPQPEMLDNAYILVMDKGASFRPEHLLVAYNSSHVLGWKWVDKDNKTACMQVHAHFPQPSAAVIDGGQSTAQTIQAIWPGIPVRRCLSHIRKSVDQKTSQTPRTQPAIEIKELTDSLKNVYTSEQAKLWLTRYARWEDRWKELLKHRTNVSKDNCSIDGYEWEWTHKELRTIRFMYRKLIKKEELFFPFSGSDIVAHNVILSRRDSQLGETISTDITNLFSAHRGINHDHGCRMVEWYLNSKTESPFIPERIISHDHWR
>NC_018019.2|WP_014799831.1|36657_37581_+|phospholipase-D
MREKVVLFLSIIMAIMLPVGNAAAAPVAHNPASTANRPVYAIAHRVLTTQGVDDAVAIGANALEIDFTAWGRGWWADHDGIPTSAGATAEEIFKHIADKRKQGANITFTWLDIKNPDYCRDARSVCSINALRDLARKYLEPAGIRVLYGFYKTVGGPAWKTITADLRDGEAVALSGPAQDVLNDFARSENKILTKQKIADYGYYDINQGFGNCYGTWNRTCDQLRKSSEARDQGKLGKTFGWTIATGQDARVNDLLEKANVDGLIFGFKITHFYRHADTENSFKAIKRWVDKHSATHHLATVSDNPW
>NC_018019.2|WP_014522931.1|37633_38500_-|ABC-transporter-ATP-binding-protein
MHTPKTTSTDLPTTAGISTDHMSALRTENVTLSWDKHVVSTDLSVDIPTGKFTAIIGPNGCGKSTLLKSCARILAPDTGSIYLNQHNLTHLHTKEIAKQLALLPQSTITPTDITVEELVRRGRFPHHNWLHQWTAEDTRAVDAALNAASVKELTHKRVTDLSGGQRQRVWLAMVLAQNTPTVLLDEPTTFLDIAHQYQLLELARSLTTQLNRTVVAVLHDLQQAVRYADHLIVMKNGSIVATGSPQEVISAELISEVFNITVRTMLIDDQLIVIPTELPVPNVAMMQG
>NC_018019.2|WP_014799832.1|38508_39495_-|membrane-protein
MTHRRSLYTALILTLLLAVSAAVAVSLPGAGITTAKVWSVFQGDDSSLAHTIVFSWRAPRIVTALFVGAALGIAGSLFQALTRNPLGSPDIIGFNTGAYTGVLLTMMAGMTSFASVAFGALAGGLATALAVMAFSVRVRIDGLRIILVGLGVSAMLSAFNRWLITRGDLNTALSAASWGAGTLNGIRWAAATPAVIALGIIVALALLLGSRIDILNLGDDTATALGLPVNPSKFVLLIVGVLLVATTTAIAGPISFIALASPHIAQRITASPRTPLLVSALTGATLLLVADIIAQRAFAPVQLPVGLVTVVIGGIYLLSLIASASRRA
>NC_018019.2|WP_041481155.1|39494_40562_-|ABC-transporter-permease
MVSTASSNPSPIRGFLRKPQPNVQRTRRSLLVVVLLLAVLLVVGSIASVMIGARLIPLPEILNALFHPDPTNVSSTIVWDRRVPRTLLAIVAGMSLGLAGTLSQALTRNPLADTGALGINSGAAFAIVVGIALFGASSPWAFLALALLGACGAAAVVYSVGTHRSATADPVRLVLSGVALSAILSGIGEGLSLVNPQAFDRLKSWMVGSVDVGTLMPLGIAGVGLACGIVLTIACAHGLNALALGDAMAISIGASTARIRFISFIAVVILAASATAAAGVIIFLGLMVPHVARWIVGPDLPRVLITSLLLGPLVLVVADIVGRLIVPGEFPAGVVVSFIGAPFLIAYAQSRKGDM
>NC_018019.2|WP_014799834.1|40608_41661_+|iron-siderophore-ABC-transporter-substrate-binding-protein
MKDTQSLNTWSHRIAVMLALFLSISLIFSLAACSSEEKQSKDAGQGNADVATGGTHFSTADAETAKLGSDAAPGEFPRTVKHALGETEIKEQPKRVVVLDTGELDSVLSLGITPVGMVTTKGSNPVPSYLADKVKDVKSVGTINEINVEEIAALQPDLILGSKLRADKIYAQLAEVAPTVFSIRPGFPWKENFLLIGDALGKEKEAEAKLNEYTEKVETIKASVPADTTVSLLRFMPKRIRLYGNKSLLGVILKDAGLARPENQNIDELATEISPETIDQAEGSVIFYSSYGKPDATGQDAIVNGAAWKNLNAVKNGQAHEVNDDVWFLGLGPTGAMQIVEELKELLPKK

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Crispr_ID: NC_018019_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_018019_3

1838682-1838954

Orphan

I-C,I-E,II-B

Consensus_repeat	Method
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	PILER-CR
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	CRISPRCasFinder
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	CRT

4 spacers

DinG

The CRISPR arrays of NC_018019_3

>merge|NC_018019|3|1838682-1838954|PILER-CR,CRISPRCasFinder,CRT
CTTTTCTCCGCGCACGCGGAGGTAGTTCCGAAATTGCTGCCCTTTCTAAGGCTCTTTCGGGCTTTTCTCCGCGCACGCGGAGGTAGTTCCGGCAAGGTGGTGAGATAAAAAGCTTGCAGCATCTTTTCTCCGCGCACGCGGAGGTAGTTCCCGAAGTGCTCGATGGCTAGGGTGCGTAGCTGGCTTTTCTCCGCGCACGCGGAGGTAGTTCCAGGTTGGTCGATTGGGTAAATTAATTCTTGTCCTTTTCTCCGCGCACGCGGAGGTAGTTCG

>NC_018019|3|1|1838682-1838954|PILER-CR
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	GAAATTGCTGCCCTTTCTAAGGCTCTTTCGGG
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	GGCAAGGTGGTGAGATAAAAAGCTTGCAGCAT
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	CGAAGTGCTCGATGGCTAGGGTGCGTAGCTGG
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	AGGTTGGTCGATTGGGTAAATTAATTCTTGTC
CTTTTCTCCGCGCACGCGGAGGTAGTTCG

>NC_018019|3|3|1838682-1838954|CRISPRCasFinder
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	GAAATTGCTGCCCTTTCTAAGGCTCTTTCGGG
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	GGCAAGGTGGTGAGATAAAAAGCTTGCAGCAT
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	CGAAGTGCTCGATGGCTAGGGTGCGTAGCTGG
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	AGGTTGGTCGATTGGGTAAATTAATTCTTGTC
CTTTTCTCCGCGCACGCGGAGGTAGTTCG

>NC_018019|3|1|1838682-1838954|CRT
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	GAAATTGCTGCCCTTTCTAAGGCTCTTTCGGG
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	GGCAAGGTGGTGAGATAAAAAGCTTGCAGCAT
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	CGAAGTGCTCGATGGCTAGGGTGCGTAGCTGG
CTTTTCTCCGCGCACGCGGAGGTAGTTCC	AGGTTGGTCGATTGGGTAAATTAATTCTTGTC
CTTTTCTCCGCGCACGCGGAGGTAGTTCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_018019.2\|WP_032802527.1\|1843073_1843301_-\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_014800847.1\|1837104_1838388_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NC_018019.2\|WP_013242517.1\|1832675_1833056_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NC_018019.2\|WP_032802528.1\|1844126_1844366_-\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_050926143.1\|1833181_1834540_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NC_018019.2\|WP_041481342.1\|1831139_1831958_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NC_018019.2\|WP_072577910.1\|1842040_1842364_-\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_032802523.1\|1839459_1839651_+\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_014800846.1\|1836610_1837108_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_018019.2\|WP_072577907.1\|1838983_1839268_+\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_041481341.1\|1830172_1831066_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NC_018019.2\|WP_088238496.1\|1842751_1842985_+\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_032802525.1\|1841038_1841878_-\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_014800845.1\|1834592_1836587_+\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NC_018019.2\|WP_013242516.1\|1832044_1832581_-\|DUF2017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378185
NC_018019.2\|WP_032802522.1\|1839245_1839473_+\|hypothetical-protein	unknown	unknown	unknown
NC_018019.2\|WP_072577908.1\|1839720_1840248_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376885
NC_018019.2\|WP_041481548.1\|1828559_1829294_-\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NC_018019.2\|WP_013242513.1\|1829332_1830100_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293802
NC_018019.2\|WP_080562512.1\|1844721_1844874_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309782

Protein	Function_ID	Function_description	E-value
NC_018019.2\|WP_014800847.1\|1837104_1838388_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.53097e-95
NC_018019.2\|WP_013242517.1\|1832675_1833056_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	1.33955e-35
NC_018019.2\|WP_050926143.1\|1833181_1834540_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NC_018019.2\|WP_041481342.1\|1831139_1831958_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	2.73903e-23
NC_018019.2\|WP_014800846.1\|1836610_1837108_+\|N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.50578e-23
NC_018019.2\|WP_041481341.1\|1830172_1831066_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	5.69627e-133
NC_018019.2\|WP_014800845.1\|1834592_1836587_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	1.47012e-152
NC_018019.2\|WP_013242516.1\|1832044_1832581_-\|DUF2017-domain-containing-protein	gnl\|CDD\|378185	pfam09438, DUF2017, Domain of unknown function (DUF2017). This is an alpha-helical domain found in gene neighborhoods that contain genes encoding ubiquitin, cysteine synthases and JAB peptidases.	1.38837e-72
NC_018019.2\|WP_072577908.1\|1839720_1840248_+\|hypothetical-protein	gnl\|CDD\|376885	pfam02661, Fic, Fic/DOC family. This family consists of the Fic (filamentation induced by cAMP) protein and doc (death on curing). The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family. Doc induces a reversible growth arrest of E. coli cells by targetting the protein synthesis machinery. Doc hosts the C-terminal domain of its antitoxin partner Phd (prevents host death) through fold complementation, a domain that is intrinsically disordered in solution but that folds into an alpha-helix on binding to Doc.This domain forms complexes with Phd antitoxins containing pfam02604.	7.35551e-12
NC_018019.2\|WP_041481548.1\|1828559_1829294_-\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	1.93295e-164
NC_018019.2\|WP_013242513.1\|1829332_1830100_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	4.17064e-75
NC_018019.2\|WP_080562512.1\|1844721_1844874_-\|hypothetical-protein	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	0.000159495

>NC_018019.2|WP_014800847.1|1837104_1838388_-|phosphoserine-phosphatase-SerB
MIELDQPQVTVSLRPELTPAVITISGQDRQGASAAAFRVLAANGVQILDVEQSQFRGFLGLAVFAGVEASKVEILEIGLKETLKTYGQNVKIELQEVAQSSRPRSTHEVVILGNPVEAHDLSRVAQTLANFDANIDTIRGISDYPVTGLELKITVAKREPGAAMPLRKALAELTAELGVDIAIERAGLLRRSKRLICFDCDSTLITGEVIEMLAAHAGREKEVAEVTERAMRGELDFEESLRERVKALAGLDASVIGEVADSIELTPGARTTIRTLKRLGYKTAVVSGGFIQVLEELAEDLGLDYVRANTLEVVDGKLTGRVIGRIVDRAAKAEFLEEFARESGIEMHQTVAVGDGANDIDMISAAGLGIAFNAKPALREIADTSVNSPFLDEVLHMLGITRADIDAADDSEGKIRRVPLPQQKNEY
>NC_018019.2|WP_014800846.1|1836610_1837108_+|N-acetyltransferase
MTAHVPTLSNDSVKLRPLLLSDAHDLTATCRDPLTQKYTTVPANYTFAMAEEFIKTEHDNLRWVITVPTSDRFCGQIELRSLATEHNAMNVGYMTAPWARGQGLMTSALLLAVDYAFSRSVRRIELQADSQNKASQRVAEKAGFILMDSSQGTMVYSLLADEYHS
>NC_018019.2|WP_014800845.1|1834592_1836587_+|ATP-dependent-DNA-helicase
MLDATSTLCPMSDSPLALSTDELLDAAVAALGGSRRNGQVSMANAVTKALESERHLAVQAGTGTGKSLAYLVPALRHAQATDSTIIVSTATIALQRQLVERDLPRLADALEPHMSRRPTFAIMKGRANYVCMNKIAAAEEPEDALIDEEDLSWLGKHVARIYEWANETEVGDRDSLDPGVPDLAWRQVSVSAQECIGASRCPHGEECFAELARKKAHDVDVIVANHALLAIDALSDVNVLPEHEVVIVDEAHELDGRITAVATNEIGVTALTMSSRRAGKLGAGEKDQKLIDIAKEWEDAMLAIEPGRLTSLPDSLKQQTVALRDAIWSLREHISRVPEGEAANDPERHAERMSLSNHLNDQHDSVIRVLSVFEEEDAASQEDVVWVLHDERRGVMIKVAPLSIAGLLHTRLFSENTVVLASATLNIGGNFNAMAASWGLPKGSWDSLDAGTPFNPATSGILYTPNSLPDPGRDGLSPEVLDEIYELIMAAGGRTLGLFSSRRAAQQATDAMRTRLPFDVLCQGDDTTGALVEKFSKQENTCLFGTLSLWQGVDVPGRSCSLVIIDRIPFPRPDDPLLQARKDAADADGRNGFMEVAATHAALLIAQGAGRLLRSVTDRGVVAILDRRIVTKRYGAFFIRSLPAFWRTNDPQVVRGALSRLVAR
>NC_018019.2|WP_050926143.1|1833181_1834540_+|nicotinate-phosphoribosyltransferase
MSCASALSVFKAKLVCVTEFESTALLTDMYELTMLQSALADGTASRSCTFEVFSRRLPNERRYGVVAGTARVLEAIKHYRFTEEQLASLTFLDATTIDFLRSYKFQGQIDGYREGELYFPSSPILTIRGTFAECVILETLILSIMNADSAVASAAARMVTAADGRPIFEMGSRRTHEYAAVTAARAAYLAGFVGTSNLEAVHRYGIPGSGTAAHAWTLLHVNDDGTPNESAAFQSQINVLGVGTTLLVDTYDIAKGVKTAIEVAGPQLGAVRIDSGDLGVMTRKVRQELDSLGAHNTGIVVSSDLDEYAIAGLRGNPVDAFGVGTSVVTSSGAPTAGMVYKLVEVDGHPVAKRSRGKAMVGGTKRAIRTHRATGTAVEEIVFPYDHDTPQIGQLNSYELTTPLMRNGIAVDNLPTLEESRAYLSEQLITLPWEGLALSKDEPVLSTRFIGFK
>NC_018019.2|WP_013242517.1|1832675_1833056_-|ATP-dependent-Clp-protease-adapter-ClpS
MQVKQEDVTHSLNELPSVVLAPTMDVVVSSPMATPELDEALSVDVASSENLPWMCIVWDDPVNLMSYVTYVFQTILGYSKRRAIELMMQVHTEGKAVVSSGERDKVEGDVKKLHTAGLWATMQQGG
>NC_018019.2|WP_013242516.1|1832044_1832581_-|DUF2017-domain-containing-protein
MQPWKKKKGLMRGVHFACVFEPMEREVLGNLASTVSEALIHRAQSAPKDELAELTGMPSGHKEAPKDPALARLLPDFEKEGDEEFEGDNSLLRCLHETDITRAKIEHLYVLGQALGPDGGVHVDITETEAHAWVAALNDIRLYVASGEVFGEDAEQDRESLVEWLAYNQESLLNAMMG
>NC_018019.2|WP_041481342.1|1831139_1831958_-|rhomboid-family-intramembrane-serine-protease
MSLRYFFTRLCFIMTNRFNPYAQSDKKTYGGVSTSGGYLPHEYGTQYLPTSDYPVNRAVQRGMKRTSLRSMGRKRLADATVLALGYVVVIWAVHIVNTVFFGGTLAQELGVHPLDGSSIWHIFTSPLVHGSYMHISANTLPGLIFVFLIGLSGRRPFWEVTMITAVVGGMGTWIFGGIGTTHIGASGLIYGWLAYLVVRGIFNKSFSQVVLGMVLAFMYGGLIWGVLPGDVGVSWQAHLFGAIGGLIAGATITSDDPPALKARREQQALHRA
>NC_018019.2|WP_041481341.1|1830172_1831066_-|glutamate-racemase
MAYVKKDLGADSLHPEAPSVKPSVVYEGTIDASSPIGIFDSGVGGLTVARAIMEQLPQESVIYIGDTANSPYGSKPIAQVRELSMRIGDELVARGCKMIVIACNTATSAALRDLRERYSIPVVGVILPAVRRAVAATRNGKIGVLGTQGTITSGAYQELFAASPGVEVYAQACPSFVSFVERGITSGRQILGVAQGYTEGLQSAGVDTLVLGCTHYPLLTGVIQLAVGDNVTLISSSEECVKDVLKVLSRKDMLAEATADKPPSRSFESTGDPALFEQLAMRFLGPHVTYVEKLRQV
>NC_018019.2|WP_013242513.1|1829332_1830100_-|MBL-fold-metallo-hydrolase
MKLTILGSSGSLGAPDNAASGYLIQMDNAPSILMDMGPGVLAQLERAQNPSDAHVVFSHLHADHCVDFPSLLVWRRYHPTAAAKGRNLCFGPTDTPVRLGRLSADSVDNIDDMSDTFAFTPWQNAKEELVGAVSITPYSVVHPIESFALRVEHKRSGKVVAYSGDSSYTENLIECARDADVFLCEATWGETSEGKVPNMHMSGEEAGRIARIAGAKRLILVHIPPWGNAKAALEKARSEFDGPVDISYQGMEIHI
>NC_018019.2|WP_041481548.1|1828559_1829294_-|ribonuclease-PH
MTTSNFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYEEDSRADVDMNVIMQNGRFVEIQGTGEHNTFDRDELARILDFAEKGCAELVAAQKAALGIA
>NC_018019.2|WP_072577907.1|1838983_1839268_+|hypothetical-protein
MALEVIAQQIRDQKILSSAVEEIFLSLSDRQTAEERAGAAMQKILDLGKPHSFLTSSFSLSTKEVSAMLKASKNSDENRFEQAETSTDDHDESH
>NC_018019.2|WP_032802522.1|1839245_1839473_+|hypothetical-protein
MTMMNPTERINKDQLRQIRNDLASAEIEGQSRAPEDEKILAAYYLGEVSEQESFESLLKAAGVHPPYPSINHDFD
>NC_018019.2|WP_032802523.1|1839459_1839651_+|hypothetical-protein
MTSINRDLKKRRWDELLYPGTQVLKNLYGIRDEFLAKKVIRAAALTARKNIPSTGFGKATISE
>NC_018019.2|WP_072577908.1|1839720_1840248_+|hypothetical-protein
MAKDHSRFESWQEIPELLSRVDMLIEWTDWQALSYNDKVDTLADIHTELNRIHPFREGNGRTTRIVMENLAKIHGIAVDWQDAVPALHSASAISMQFPPLSEDSVLPLRLIWDQISAPLPNEQQDQKDFHKAQEMVKDIMGGTGIDFSLESSSQISYELDQNNQVDSFDKHSPEL
>NC_018019.2|WP_032802525.1|1841038_1841878_-|hypothetical-protein
MIEPFPPLENLYKKLKDKDLVAYVDETYASPDGQSHNGFYTICAVLYESCEIKNARNDFVRIAAGNYWHSTQALQTVDGQAKFSAMVNELSRFRDPIVVTVKLNGNFQKESDQLHARSEALEKLAVTLSLAYSHRIKGLIVEKNRRQRLDNLDRTVIAKLYRLGTVPKSLQMLHCSPSSEPLLWTPDITAMAWRRAITHTDASSREFVKLGSQCHIVSIDSERTIHEIPKIPTGNALLDEIYGNSSFLESLRHREMHRLVQNENLPQVIIKEKENQKEL
>NC_018019.2|WP_072577910.1|1842040_1842364_-|hypothetical-protein
MTNPMGCRKAARATTFTRETHITPKPIGIKKLTIRIDSTLHTAQNDGFKKEITMAELVNGLIESYLERGKLLFFVGKVREELAWESKISLLTNYVVRANGCIVNHPV
>NC_018019.2|WP_088238496.1|1842751_1842985_+|hypothetical-protein
MTGKGKEDPSSSAFLRARGGSSALISKLEAEMSEMRAKLDIWRGKYYEAVHYIRQLHLAYPDAVDANPVADELEQDF
>NC_018019.2|WP_032802527.1|1843073_1843301_-|hypothetical-protein
MNPTITDKDTGRELWRVEDCANHCNIGKGTWRTYVADGRAPRHIADFGPRFPLWDAEEVKTWHANRPGSPVKNHP
>NC_018019.2|WP_032802528.1|1844126_1844366_-|hypothetical-protein
MTLSASLVAATASYSAFQHNPSHPLVGKHSTLGGWFFAIAFIIYLASFFLLVTYEAIITAATVAFLGLVVTAFAHVSAK
>NC_018019.2|WP_080562512.1|1844721_1844874_-|hypothetical-protein
MLRPHRRYPIPIDLDILQKLGKPRAMDIYVWITMKKAALHYQNRSSLTLG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_018019_3	3.1\|1838711\|32\|NC_018019\|PILER-CR,CRISPRCasFinder,CRT	1838711-1838742	32	NZ_CP037935	Marinobacter sp. JH2 strain sp. plasmid p36788, complete sequence	12805-12836	9	0.719
NC_018019_3	3.1\|1838711\|32\|NC_018019\|PILER-CR,CRISPRCasFinder,CRT	1838711-1838742	32	MN693235	Marine virus AFVG_25M455, complete genome	25459-25490	10	0.688
NC_018019_3	3.1\|1838711\|32\|NC_018019\|PILER-CR,CRISPRCasFinder,CRT	1838711-1838742	32	MN693491	Marine virus AFVG_25M150, complete genome	25717-25748	10	0.688
NC_018019_3	3.4\|1838894\|32\|NC_018019\|PILER-CR,CRISPRCasFinder,CRT	1838894-1838925	32	CP033573	Acinetobacter nosocomialis strain 2010N17-248 plasmid p2010N17-248, complete sequence	3462-3493	10	0.688
NC_018019_3	3.4\|1838894\|32\|NC_018019\|PILER-CR,CRISPRCasFinder,CRT	1838894-1838925	32	NZ_CP026129	Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence	35874-35905	10	0.688

1. spacer 3.1|1838711|32|NC_018019|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037935 (Marinobacter sp. JH2 strain sp. plasmid p36788, complete sequence) position: , mismatch: 9, identity: 0.719

gaaattgctgccctttctaaggctctttcggg	CRISPR spacer
gggcctctggccctttctacggccctttcggg	Protospacer
*.. .* . ********** ***.********

2. spacer 3.1|1838711|32|NC_018019|PILER-CR,CRISPRCasFinder,CRT matches to MN693235 (Marine virus AFVG_25M455, complete genome) position: , mismatch: 10, identity: 0.688

gaaattgctgccctttctaaggctctttcggg	CRISPR spacer
ccgtttgctgccatttctaagtctcttgaagt	Protospacer
  . ******** ******** *****  .*

3. spacer 3.1|1838711|32|NC_018019|PILER-CR,CRISPRCasFinder,CRT matches to MN693491 (Marine virus AFVG_25M150, complete genome) position: , mismatch: 10, identity: 0.688

gaaattgctgccctttctaaggctctttcggg	CRISPR spacer
ccgtttgctgccatttctaagtctcttgaagt	Protospacer
  . ******** ******** *****  .*

4. spacer 3.4|1838894|32|NC_018019|PILER-CR,CRISPRCasFinder,CRT matches to CP033573 (Acinetobacter nosocomialis strain 2010N17-248 plasmid p2010N17-248, complete sequence) position: , mismatch: 10, identity: 0.688

aggttggtcgattgggtaaattaattcttgtc	CRISPR spacer
ttgttggtctattggggaaattaatcagtaga	Protospacer
  ******* ****** ********.  *.

5. spacer 3.4|1838894|32|NC_018019|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 10, identity: 0.688

aggttggtcgattgggtaaattaattcttgtc	CRISPR spacer
ttgttggtctattggggaaattaatcagtaga	Protospacer
  ******* ****** ********.  *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1758159 : 1833056

Agrobacterium_phage(18.18%)

bacteriocin,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041481317.1\|1758159_1759446_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.5e-131	55.8
WP_072577897.1\|1759606_1762411_-	aminodeoxychorismate synthase, component I	A0A0B5J984	Pandoravirus	7.9e-85	34.7
WP_013242459.1\|1762487_1763117_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.4e-37	43.5
WP_013242460.1\|1763132_1763732_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.3e-42	48.3
WP_041481319.1\|1763942_1765295_-	trigger factor	NA	NA	NA	NA
WP_014300878.1\|1766081_1766324_+	hypothetical protein	A0A1W6JRB8	Corynebacterium_phage	3.9e-09	48.4
WP_072577898.1\|1766460_1767237_+	hypothetical protein	NA	NA	NA	NA
WP_041481321.1\|1767323_1768334_-	pirin family protein	NA	NA	NA	NA
WP_013242465.1\|1768451_1768925_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_041481322.1\|1768991_1769612_-	DSBA oxidoreductase	NA	NA	NA	NA
WP_014800800.1\|1769945_1772561_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.0e-42	29.9
WP_014800801.1\|1772982_1773657_+	mechanosensitive ion channel protein MscS	NA	NA	NA	NA
WP_013242471.1\|1773679_1774072_+	globin	NA	NA	NA	NA
WP_041481323.1\|1774083_1774980_+	EamA-like transporter family protein	NA	NA	NA	NA
WP_013242473.1\|1774983_1775592_-	hypothetical protein	NA	NA	NA	NA
WP_013242474.1\|1775597_1776026_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_014522869.1\|1776231_1777902_-	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	1.3e-47	27.9
WP_041481324.1\|1778091_1778652_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_041481325.1\|1779174_1780929_+	hypothetical protein	NA	NA	NA	NA
WP_014800808.1\|1780925_1782464_+	hypothetical protein	NA	NA	NA	NA
WP_041481326.1\|1782490_1783969_+	nitroreductase	NA	NA	NA	NA
WP_041481327.1\|1783965_1786569_+	lantibiotic dehydratase	NA	NA	NA	NA
WP_041481328.1\|1786568_1787582_+	hypothetical protein	NA	NA	NA	NA
WP_041481329.1\|1787578_1788559_+	hypothetical protein	NA	NA	NA	NA
WP_014300888.1\|1788597_1788774_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_041481330.1\|1788847_1790299_+	hypothetical protein	NA	NA	NA	NA
WP_014367484.1\|1790326_1791085_-	permease	NA	NA	NA	NA
WP_041481331.1\|1791081_1792005_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.5e-19	26.1
WP_014367486.1\|1792095_1794141_-	copper resistance protein	NA	NA	NA	NA
WP_014401336.1\|1797037_1797238_+	DUF466 domain-containing protein	NA	NA	NA	NA
WP_041481333.1\|1797579_1799406_-	peptidase S8	A0A1B0T6A2	Bacillus_phage	5.2e-29	31.8
WP_072577900.1\|1799681_1800677_+	oxidoreductase	NA	NA	NA	NA
WP_041481334.1\|1800803_1801607_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_080577986.1\|1801672_1802332_+	oligoribonuclease	M4M9I5	Vibrio_phage	8.4e-22	35.0
WP_013242493.1\|1802511_1803339_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_041481335.1\|1803392_1804583_-	transpeptidase	NA	NA	NA	NA
WP_072577901.1\|1805154_1805511_+	hypothetical protein	NA	NA	NA	NA
WP_072577903.1\|1806982_1807207_+	hypothetical protein	NA	NA	NA	NA
WP_041481336.1\|1807384_1808383_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_014800824.1\|1808522_1809137_+	amidase	A0A2K9L2K0	Tupanvirus	9.9e-17	32.6
WP_014800825.1\|1809145_1809490_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_013242498.1\|1809611_1809887_-	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_041481337.1\|1809975_1810455_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_013242500.1\|1810492_1811146_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_041481338.1\|1811158_1811548_-	holo-ACP synthase	NA	NA	NA	NA
WP_041481339.1\|1811679_1820778_-	type I polyketide synthase	NA	NA	NA	NA
WP_041481340.1\|1821002_1821308_-	hypothetical protein	NA	NA	NA	NA
WP_014800832.1\|1821468_1822584_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_014800833.1\|1822580_1823207_+	DNA-binding response regulator	NA	NA	NA	NA
WP_014800834.1\|1823250_1824282_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_041481547.1\|1824464_1825223_-	hypothetical protein	NA	NA	NA	NA
WP_014800837.1\|1826976_1827423_+	hypothetical protein	NA	NA	NA	NA
WP_013242510.1\|1827510_1827870_+	DUF3817 domain-containing protein	NA	NA	NA	NA
WP_014800838.1\|1827939_1828563_-	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA
WP_041481548.1\|1828559_1829294_-	ribonuclease PH	NA	NA	NA	NA
WP_013242513.1\|1829332_1830100_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_041481341.1\|1830172_1831066_-	glutamate racemase	NA	NA	NA	NA
WP_041481342.1\|1831139_1831958_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_013242516.1\|1832044_1832581_-	DUF2017 domain-containing protein	NA	NA	NA	NA
WP_013242517.1\|1832675_1833056_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA

DBSCAN-SWA_2

1983879 : 1992340

Pandoravirus(33.33%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041481377.1\|1983879_1985628_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	2.2e-61	31.5
WP_041481378.1\|1985605_1986274_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_041481379.1\|1986281_1986668_-	hypothetical protein	NA	NA	NA	NA
WP_014300953.1\|1986664_1987180_-	hypothetical protein	NA	NA	NA	NA
WP_013242641.1\|1987190_1987637_-	DUF3180 domain-containing protein	NA	NA	NA	NA
WP_014367625.1\|1987633_1988089_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	S4W084	Pandoravirus	1.1e-09	33.8
WP_041481380.1\|1988090_1988432_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_041481381.1\|1988418_1989201_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	6.5e-21	32.2
WP_041481382.1\|1989202_1989766_-	GTP cyclohydrolase I FolE	A0A1W7AF02	Streptococcus_virus	4.5e-48	57.2
WP_087121955.1\|1989758_1991714_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5EQU5	Bathycoccus_sp._RCC1105_virus	7.6e-111	50.3
WP_014300955.1\|1991758_1992340_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	3.0e-15	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_018019

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection