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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_018020 Turneriella parva DSM 21527, complete sequence 5 crisprs csa3,DinG,DEDDh,RT,PD-DExK 0 2 1 0
NC_018021 Turneriella parva DSM 21527 plasmid pTURPA.01, complete sequence 0 crisprs DEDDh 0 0 0 0

Results visualization

1. NC_018020
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018020_1 743350-743431 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018020_2 1993423-1993552 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018020_3 2846479-2846605 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018020_4 3819026-3819152 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018020_5 3922136-3922261 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_018020_2 2.1|1993472|32|NC_018020|CRISPRCasFinder 1993472-1993503 32 NC_015724 Cupriavidus necator N-1 plasmid pBB2, complete sequence 393583-393614 7 0.781
NC_018020_5 5.1|3922182|34|NC_018020|CRISPRCasFinder 3922182-3922215 34 NC_015854 Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence 4654-4687 9 0.735
NC_018020_2 2.1|1993472|32|NC_018020|CRISPRCasFinder 1993472-1993503 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 571613-571644 10 0.688

1. spacer 2.1|1993472|32|NC_018020|CRISPRCasFinder matches to NC_015724 (Cupriavidus necator N-1 plasmid pBB2, complete sequence) position: , mismatch: 7, identity: 0.781

gccgccacgcctgccctgagcgccgtcgaagg	CRISPR spacer
gtgggcacgcctgccctgcgcgccggcgaccg	Protospacer
*. * ************* ****** ***  *

2. spacer 5.1|3922182|34|NC_018020|CRISPRCasFinder matches to NC_015854 (Acidithiobacillus caldus SM-1 plasmid pLAtc3, complete sequence) position: , mismatch: 9, identity: 0.735

tgaccgcaggtgcagggatgcgcccaggtcggcg	CRISPR spacer
tccccgcaggggcagggctgcgcccagcgagggc	Protospacer
*  ******* ****** *********   **  

3. spacer 2.1|1993472|32|NC_018020|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gccgccacgcctgccctgagcgccgtcgaagg	CRISPR spacer
tgcgccacgcctgccctgaacgacgcgtcgag	Protospacer
  *****************.** **.   ..*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 542124 : 597828 48 Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage(20.0%) protease,integrase,transposase attL 546787:546846|attR 570951:572085
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage