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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_018024 Acetomicrobium mobile DSM 13181, complete sequence 4 crisprs csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csa3,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6 0 14 2 0

Results visualization

1. NC_018024
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018024_1 1096374-1098139 TypeIII NA
26 spacers
csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018024_2 1107551-1113295 TypeIII NA
86 spacers
cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018024_3 1180259-1180347 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_018024_4 1604244-1609325 TypeI-B NA
76 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_018024_1 1.5|1096674|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1096674-1096709 36 MT939241 Enterococcus phage 9183, complete genome 78086-78121 6 0.833
NC_018024_4 4.19|1605473|35|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1605473-1605507 35 AJ298298 Bacteriophage P27 complete genome 32043-32077 7 0.8
NC_018024_4 4.19|1605473|35|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1605473-1605507 35 NC_003356 Enterobacteria phage phiP27, complete genome 32043-32077 7 0.8
NC_018024_1 1.23|1097877|35|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1097877-1097911 35 NC_011251 Borrelia duttonii Ly plasmid pl41, complete sequence 15131-15165 8 0.771
NC_018024_2 2.10|1108180|36|NC_018024|CRISPRCasFinder,CRT 1108180-1108215 36 NZ_CP015803 Borrelia mayonii strain MN14-1539 plasmid lp17 3472-3507 9 0.75
NC_018024_2 2.10|1108180|36|NC_018024|CRISPRCasFinder,CRT 1108180-1108215 36 NZ_CP015788 Borrelia mayonii strain MN14-1420 plasmid lp17, complete sequence 3472-3507 9 0.75
NC_018024_2 2.29|1109438|35|NC_018024|CRISPRCasFinder,CRT 1109438-1109472 35 MH572360 Microviridae sp. isolate SD_SC_62, complete genome 957-991 9 0.743
NC_018024_2 2.30|1109503|35|NC_018024|CRISPRCasFinder,CRT 1109503-1109537 35 NZ_CP020040 Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence 214941-214975 9 0.743
NC_018024_2 2.81|1112892|35|NC_018024|CRISPRCasFinder,CRT 1112892-1112926 35 NZ_CP033050 Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence 295615-295649 9 0.743
NC_018024_2 2.96|1108182|36|NC_018024|PILER-CR 1108182-1108217 36 NZ_CP015803 Borrelia mayonii strain MN14-1539 plasmid lp17 3472-3507 9 0.75
NC_018024_2 2.96|1108182|36|NC_018024|PILER-CR 1108182-1108217 36 NZ_CP015788 Borrelia mayonii strain MN14-1420 plasmid lp17, complete sequence 3472-3507 9 0.75
NC_018024_2 2.115|1109440|35|NC_018024|PILER-CR 1109440-1109474 35 MH572360 Microviridae sp. isolate SD_SC_62, complete genome 957-991 9 0.743
NC_018024_2 2.116|1109505|35|NC_018024|PILER-CR 1109505-1109539 35 NZ_CP020040 Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence 214941-214975 9 0.743
NC_018024_2 2.167|1112894|35|NC_018024|PILER-CR 1112894-1112928 35 NZ_CP033050 Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence 295615-295649 9 0.743
NC_018024_4 4.63|1608397|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608397-1608432 36 NC_031121 Bacillus phage Aurora, complete genome 25852-25887 9 0.75
NC_018024_4 4.51|1607602|34|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1607602-1607635 34 NC_014838 Pantoea sp. At-9b plasmid pPAT9B01, complete sequence 599743-599776 10 0.706
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP022775 Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence 610235-610270 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NC_014310 Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence 598586-598621 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP022762 Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence 495793-495828 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP023017 Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence 565165-565200 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP014703 Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence 495793-495828 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP022760 Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence 499667-499702 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP022789 Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence 499657-499692 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP022771 Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence 495805-495840 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP022777 Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence 495825-495860 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP022799 Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence 495778-495813 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP022764 Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence 610282-610317 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP022797 Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence 610282-610317 10 0.722
NC_018024_4 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT 1608797-1608832 36 NZ_CP022758 Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence 610273-610308 10 0.722

1. spacer 1.5|1096674|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to MT939241 (Enterococcus phage 9183, complete genome) position: , mismatch: 6, identity: 0.833

taatcttaaatattccagaatttatgattatatgtt-	CRISPR spacer
aaatctttaacattccagaatttatgatta-gtgctg	Protospacer
 ****** **.******************* .**.* 

2. spacer 4.19|1605473|35|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to AJ298298 (Bacteriophage P27 complete genome) position: , mismatch: 7, identity: 0.8

ccgtgcgccactgtgccatcatctgtcctgcctgc	CRISPR spacer
ctgtgcgccactgtgccatcatctgaccggattct	Protospacer
*.*********************** ** * .* .

3. spacer 4.19|1605473|35|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NC_003356 (Enterobacteria phage phiP27, complete genome) position: , mismatch: 7, identity: 0.8

ccgtgcgccactgtgccatcatctgtcctgcctgc	CRISPR spacer
ctgtgcgccactgtgccatcatctgaccggattct	Protospacer
*.*********************** ** * .* .

4. spacer 1.23|1097877|35|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NC_011251 (Borrelia duttonii Ly plasmid pl41, complete sequence) position: , mismatch: 8, identity: 0.771

aaggttgattttactgtggatgtattgtttaccca	CRISPR spacer
atagttgattttactttggatttattgtatcctaa	Protospacer
* .************ ***** ****** * *. *

5. spacer 2.10|1108180|36|NC_018024|CRISPRCasFinder,CRT matches to NZ_CP015803 (Borrelia mayonii strain MN14-1539 plasmid lp17) position: , mismatch: 9, identity: 0.75

tctctgtttctttagccatttgctctatgaattcgt	CRISPR spacer
tctctttttctttagctatttgctctttttcaacct	Protospacer
***** **********.********* *     * *

6. spacer 2.10|1108180|36|NC_018024|CRISPRCasFinder,CRT matches to NZ_CP015788 (Borrelia mayonii strain MN14-1420 plasmid lp17, complete sequence) position: , mismatch: 9, identity: 0.75

tctctgtttctttagccatttgctctatgaattcgt	CRISPR spacer
tctctttttctttagctatttgctctttttcaacct	Protospacer
***** **********.********* *     * *

7. spacer 2.29|1109438|35|NC_018024|CRISPRCasFinder,CRT matches to MH572360 (Microviridae sp. isolate SD_SC_62, complete genome) position: , mismatch: 9, identity: 0.743

caacgacatagccatcctcgtcgaag----cccaaagtg	CRISPR spacer
aaacgacatagccatgctcttcgaagaatttccga----	Protospacer
 ************** *** ******    .**.*    

8. spacer 2.30|1109503|35|NC_018024|CRISPRCasFinder,CRT matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 9, identity: 0.743

ccgacgaccttggcgacggattgcgccaattcgga	CRISPR spacer
tcgacgaccttcgcgacggactgcgcgtcggtgga	Protospacer
.********** ********.*****     .***

9. spacer 2.81|1112892|35|NC_018024|CRISPRCasFinder,CRT matches to NZ_CP033050 (Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

cgttgccatcttttattcctccctttcaattcttt	CRISPR spacer
ttgttccattttttattccgccctttcaatgattg	Protospacer
.  * ****.********* **********  ** 

10. spacer 2.96|1108182|36|NC_018024|PILER-CR matches to NZ_CP015803 (Borrelia mayonii strain MN14-1539 plasmid lp17) position: , mismatch: 9, identity: 0.75

tctctgtttctttagccatttgctctatgaattcgt	CRISPR spacer
tctctttttctttagctatttgctctttttcaacct	Protospacer
***** **********.********* *     * *

11. spacer 2.96|1108182|36|NC_018024|PILER-CR matches to NZ_CP015788 (Borrelia mayonii strain MN14-1420 plasmid lp17, complete sequence) position: , mismatch: 9, identity: 0.75

tctctgtttctttagccatttgctctatgaattcgt	CRISPR spacer
tctctttttctttagctatttgctctttttcaacct	Protospacer
***** **********.********* *     * *

12. spacer 2.115|1109440|35|NC_018024|PILER-CR matches to MH572360 (Microviridae sp. isolate SD_SC_62, complete genome) position: , mismatch: 9, identity: 0.743

caacgacatagccatcctcgtcgaag----cccaaagtg	CRISPR spacer
aaacgacatagccatgctcttcgaagaatttccga----	Protospacer
 ************** *** ******    .**.*    

13. spacer 2.116|1109505|35|NC_018024|PILER-CR matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 9, identity: 0.743

ccgacgaccttggcgacggattgcgccaattcgga	CRISPR spacer
tcgacgaccttcgcgacggactgcgcgtcggtgga	Protospacer
.********** ********.*****     .***

14. spacer 2.167|1112894|35|NC_018024|PILER-CR matches to NZ_CP033050 (Virgibacillus halodenitrificans strain Bac324 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.743

cgttgccatcttttattcctccctttcaattcttt	CRISPR spacer
ttgttccattttttattccgccctttcaatgattg	Protospacer
.  * ****.********* **********  ** 

15. spacer 4.63|1608397|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NC_031121 (Bacillus phage Aurora, complete genome) position: , mismatch: 9, identity: 0.75

ttttttgaaagatttttattaagattgatataaaaa	CRISPR spacer
aattttgaaatatttttattaatattgacgatataa	Protospacer
  ******** *********** *****..  * **

16. spacer 4.51|1607602|34|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NC_014838 (Pantoea sp. At-9b plasmid pPAT9B01, complete sequence) position: , mismatch: 10, identity: 0.706

gatcaaaaaaggtcacaagcctagccctattcca	CRISPR spacer
cgtcaaaaaaggtcagaatcctagccacatcgac	Protospacer
 .************* ** ******* .**.   

17. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

18. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

19. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

20. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

21. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

22. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

23. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

24. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

25. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

26. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

27. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

28. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

29. spacer 4.69|1608797|36|NC_018024|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

cgatgccgaacttggtgccgcgcagctcgccaacgc	CRISPR spacer
cagcaccgaactcggtaccgcgcagctcgcctatca	Protospacer
*....*******.***.************** *.  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 762690 : 770509 7 Staphylococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_2 1319087 : 1329909 9 Synechococcus_phage(28.57%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage