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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_017219 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088, complete genome 5 crisprs c2c9_V-U4,DEDDh,WYL,cas14j,cas3 0 1 6 0

Results visualization

1. NC_017219
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017219_1 932216-932372 Orphan NA
2 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017219_2 1257332-1257419 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017219_3 1989775-1989857 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017219_4 2438382-2438467 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_017219_5 2555303-2555385 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_017219_3 3.1|1989798|37|NC_017219|CRISPRCasFinder 1989798-1989834 37 NC_047902 Pseudomonas phage PMBT3, complete genome 3867-3903 8 0.784

1. spacer 3.1|1989798|37|NC_017219|CRISPRCasFinder matches to NC_047902 (Pseudomonas phage PMBT3, complete genome) position: , mismatch: 8, identity: 0.784

cgccaactcggtggacgcgagcaagatcgtggccgga---	CRISPR spacer
cgccaactcggtgaccgcgagcaaga---tggctgaggtt	Protospacer
*************. ***********   ****.*..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1163972 : 1212600 42 Staphylococcus_phage(33.33%) tRNA,transposase,integrase attL 1155202:1155219|attR 1201317:1201334
DBSCAN-SWA_2 1296426 : 1309223 15 Bifidobacterium_phage(63.64%) portal,capsid,tail NA
DBSCAN-SWA_3 1491665 : 1527122 47 Mycobacterium_phage(25.0%) transposase,integrase attL 1485601:1485618|attR 1524003:1524020
DBSCAN-SWA_4 1805809 : 1870387 58 Lactococcus_phage(17.65%) transposase,protease,holin,integrase attL 1801401:1801419|attR 1865740:1865758
DBSCAN-SWA_5 1974017 : 1985891 15 Propionibacterium_phage(25.0%) terminase,portal,capsid NA
DBSCAN-SWA_6 2796740 : 2806517 7 Mycobacterium_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage