CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015913	Candidatus Arthromitus sp. SFB-mouse-Japan, complete genome	3 crisprs	csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh	0	5	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_015913_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015913_1

114769-114999

Orphan

I-C

Consensus_repeat	Method
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRT

3 spacers

The CRISPR arrays of NC_015913_1

>merge|NC_015913|1|114769-114999|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATGAGGATAAAGGAGTTGGCAATTTACATAGTGCATCGTCGCACCTCACGCAGGTGCGTGGATTGAAATTACGTAGTTCTATAACTTTACCAATTATGTGTAGTCGCACCTCACGCAGGTGCGTGGATTGAAATATATCTAATATTTTAGCTAACTCTAACTGAGTCAGGTCGCACCTCACGTAGGTGCGTGGATTGAAGG

>NC_015913|1|1|114769-114999|PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GAGGATAAAGGAGTTGGCAATTTACATAGTGCATC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TACGTAGTTCTATAACTTTACCAATTATGTGTA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATATCTAATATTTTAGCTAACTCTAACTGAGTCAG
GTCGCACCTCACGTAGGTGCGTGGATTGAAGG

>NC_015913|1|1|114769-114999|CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GAGGATAAAGGAGTTGGCAATTTACATAGTGCATC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TACGTAGTTCTATAACTTTACCAATTATGTGTA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATATCTAATATTTTAGCTAACTCTAACTGAGTCAG
GTCGCACCTCACGTAGGTGCGTGGATTGAAGG

>NC_015913|1|1|114769-114999|CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GAGGATAAAGGAGTTGGCAATTTACATAGTGCATC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TACGTAGTTCTATAACTTTACCAATTATGTGTA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATATCTAATATTTTAGCTAACTCTAACTGAGTCAG
GTCGCACCTCACGTAGGTGCGTGGATTGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_015913.1\|WP_005807588.1\|103673_107213_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235868
NC_015913.1\|WP_014017800.1\|118930_119551_+\|phage-antirepressor	unknown	unknown	gnl\|CDD\|226144
NC_015913.1\|WP_014017796.1\|117112_117826_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|234688
NC_015913.1\|WP_005807590.1\|101731_103573_+\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|273676
NC_015913.1\|WP_041568914.1\|115046_115298_-\|peptidase-S24	unknown	unknown	gnl\|CDD\|224885
NC_015913.1\|WP_005807586.1\|107241_108201_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NC_015913.1\|WP_007439944.1\|109831_111217_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NC_015913.1\|WP_005807584.1\|108228_109650_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545
NC_015913.1\|WP_005807578.1\|112694_113999_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224031
NC_015913.1\|WP_014017802.1\|119889_120090_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_015913.1\|WP_005807558.1\|120144_120363_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_015913.1\|WP_005807595.1\|99800_100703_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|224398
NC_015913.1\|WP_014017799.1\|118614_118806_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_015913.1\|WP_005807580.1\|111269_112460_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NC_015913.1\|WP_014017795.1\|115640_116375_+\|DUF3644-domain-containing-protein	unknown	unknown	gnl\|CDD\|378842
NC_015913.1\|WP_014017797.1\|117965_118169_+\|DUF739-family-protein	unknown	unknown	unknown
NC_015913.1\|WP_041568926.1\|118287_118503_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_015913.1\|WP_014017801.1\|119553_119772_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NC_015913.1\|WP_005807576.1\|113999_114587_+\|hypothetical-protein	unknown	unknown	unknown
NC_015913.1\|WP_005807592.1\|100737_101619_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015913.1\|WP_005807588.1\|103673_107213_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235868	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.	0
NC_015913.1\|WP_014017800.1\|118930_119551_+\|phage-antirepressor	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	2.32285e-30
NC_015913.1\|WP_014017796.1\|117112_117826_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	2.09571e-29
NC_015913.1\|WP_014017795.1\|115640_116375_+\|DUF3644-domain-containing-protein	gnl\|CDD\|378842	pfam12358, DUF3644, Protein of unknown function (DUF3644). This domain family is found in bacteria, and is typically between 65 and 80 amino acids in length.	2.53758e-16
NC_015913.1\|WP_041568914.1\|115046_115298_-\|peptidase-S24	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	1.77377e-17
NC_015913.1\|WP_005807586.1\|107241_108201_+\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NC_015913.1\|WP_007439944.1\|109831_111217_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	2.65994e-128
NC_015913.1\|WP_005807584.1\|108228_109650_+\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	0
NC_015913.1\|WP_005807578.1\|112694_113999_+\|AAA-family-ATPase	gnl\|CDD\|224031	COG1106, COG1106, Predicted ATPases [General function prediction only].	3.60856e-16
NC_015913.1\|WP_014017802.1\|119889_120090_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.10318e-10
NC_015913.1\|WP_005807558.1\|120144_120363_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	9.08849e-08
NC_015913.1\|WP_005807595.1\|99800_100703_+\|DNA-binding-protein-WhiA	gnl\|CDD\|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	1.08203e-55
NC_015913.1\|WP_014017799.1\|118614_118806_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.63094e-11
NC_015913.1\|WP_005807580.1\|111269_112460_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.23087e-40
NC_015913.1\|WP_041568926.1\|118287_118503_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.12367e-13
NC_015913.1\|WP_014017801.1\|119553_119772_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	5.6844e-16
NC_015913.1\|WP_005807590.1\|101731_103573_+\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|273676	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. [Amino acid biosynthesis, Aspartate family].	6.593e-144

>NC_015913.1|WP_005807576.1|113999_114587_+|hypothetical-protein
MGGKKAQIQYLRCILICHGKSEKEFMETIKQNLRLKIHIESDKKGSKSIQINSLNKTLKNHKYGKRDNFLRYFEDIELIKGKITSEFKIFTLLDTDDKEKEINLIKYLNKEMFKEHHLYDHIVPIYNTPNLESVFEEIGHVFKNKGEARKREYKDLLKPYPTPKLARNYLKDLSGKFEKSKNTNLNHVINFLLNI
>NC_015913.1|WP_005807578.1|112694_113999_+|AAA-family-ATPase
MFTGIKLKNFKSLVDFEVKFPRNRKLVIIYGENGVGKSNFIDAFSILRKLVTGRPFDVDDFLELANLKFNHGLSNIDMDAEVITDLFKTSNLKRIIESCKTINSEGENMVLSFDFTLRGKKGSYIIETDDNRLISERLEYVYNKQIVEFFNVNNDEIYLNEKVIKNKEYYEELINNCEKYWGKNTLTSMIFKDIQSKNDKYMSKSLTKNMIEIIDYFSSLNISVSGQILFPGLHLGEGITQMSNQAELDKNEKILDDIFTRLYPDIKQVYYKKEIIDDGKINYKLYFKKLVGNKILDIDIERESKGTKQVLNITKQILYGLDKQVLIIDEFDTGIHDILAKSMLQSLYDSLDMQIIITTHNTLLIEAKDLCKNAYVLTHNIDGSKDMIAISDFEKRIHSNLNIRDRYLRGMYGGVPIPLDIDFSDYSDANLEDC
>NC_015913.1|WP_005807580.1|111269_112460_-|site-specific-integrase
MTGSVRKRGDKWYYSFEAARVDGKRKRIERVGGRTKKEAEAALRKALEDYENGEQLQKTNISVSDYMDLWFDAYVLLNCRYNTQRSYRLIIDKHIKPSLGILKLTSLTPGKLQDFINSKYLTGISKNHLNNIISLLSGSLNYSVHPMNFLKNNPMQYVKIPKYNNTKTTDKHKIITNDDFNAIIKRFPERSSFYIPLMIGYHTGCRIGEAMGLTWDDIDLDNNTININKLIYKKDTSWYFGEPKTTSSSRIINIGNTLKNALKYHKRYIDIKRLEYGEHYIKQYNINDKITTSSLNLKEHLLNMVCVKSNGMLLTPDSFKYASRVINYELGIPFNFHSLRHTHATLLVENGANIKDVQHRLGHNNIQTTLNTYTHNTDKLAKQSVDIFENIILPTY
>NC_015913.1|WP_007439944.1|109831_111217_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MVDVANKYIVKIEDYDSKGNGVSHIDDLVVFVPNTIVGEIVEICIEKVNKNFLRGRVNEVLSVSESRVLPICEIYEKCGGCNIQHMNYKEQIRFKESKIINTLNKIGDIRNIKMEKFYAMSIPYEYRNKVQVPFGLSDSGVKAGFYEKNTHNIINMDFCHIQFHEGNDIVKETREYIKKNNIKPYDESANYKKGCDYGLVRHLLIRKGYNTNEIMLVIVLTRDDEEFLNGYMDFILEKFKNIKTIIVNVNNEITNVILGKYERVLYGDGYIKDKINDFIFRIHSKSFFQVNTKQSEKLYSAAIEMCDLKFGDILLDAYCGIGTIGICASRKIKQVYGIEEVKESIVDANENKIINNIKNIEFIHGKVEDEIFNLVNSGVNINAVILDPPRKGVKERVLHKIRDINCRKIVYISCDVSTLSRDAKILNSLGYKIDKIRGVDMFCQTYHVETIVRFTLRPSGF
>NC_015913.1|WP_005807584.1|108228_109650_+|pyruvate-kinase
MRKTKIVCTIGPASDKYDILRELIEKGMNVMRLNFSHGDFEEHGNRIKLVRQISEELNKNVGIMLDTKGPEIRTKKFEGKVLLNQGDKFVIYTKEDIVGDSTRCSVTYEDLYKDVEVGGKILIDDGLVALEIEDVEDGKISCIVLNSGEISSNKGVNLPKSKIKLPALTEKDKNDLLFGIKNDVEYVAASFIRKSDDVIQIRKFLDLNGGDFIKIISKIENQEGLDNIDEIIDSSDGIMVARGDLGVEIPIENLPHWQKLIIKKCNDRGKFVITATQMLDSMIRNPRPTRAEASDVANAIHDGSDAVMLSGETANGKYPLEAYEIMDKIIVTTEQSLDYEGKLQKKLSKIEYKDVPNTIALFSCTTANEVGAKAILACTKSGATAKFVSRFRPECPIISITQMKKVARMLSIYWGVYTQTISETIDNTDMLIDLSVDKAKKEYNFKDGDLVVVSASVPANFKGHTNMLKVHEI
>NC_015913.1|WP_005807586.1|107241_108201_+|6-phosphofructokinase
MKKIAILTSGGDAPGMNAAVRSVVRYALSKDIEVLGIHRGYHGLLHGEIESLSRRSVSDIIDRGGTFLKTARCLEFKQEEVRAQAYEILKSHNVDGLVVVGGDGSFTGAHLLSKFGLSTVGIPGTIDNDLPYTDYTIGFDTALNTILDAVRKLRDTSSSHERVSIVEVMGRNCGDLALYSALAGGAEAVIVPEYPFNREGLCKTILESKKNKKLHSLIILAEGAGNAEDLRKYIQQKIGLDTRATVLGHIQRGGIPTGRDRVLASVMGRKAVDTLLSNEVCAKVIGVKENTVFDMDIEEALKIEKKFNKDLYDLVNKLV
>NC_015913.1|WP_005807588.1|103673_107213_+|DNA-polymerase-III-subunit-alpha
MNDFVHLHVHSEFSLLDSSCKIRNLVERAKELGMTSLAITDHGVMYGCLEFYKACKMYGIKPIIGCEIYVANKSMDIKNADKDNFTSHLVLLVKDEIGYRNLLKIVSDSFIRGFYYKPRVDIEYLKEHSEGLIALSACLSGGISKYILRNDIDGAKNLSIIYKEIFKEDFYLEIQDHGIEDQKKVNNLLLEFSSELDIKLVVTNDVHYIKKDDANAHDVLICIQTGSNVDEERRMKYHGDQFYLKSKDEMYEAFPNYMDGLLNTIEIRDKCNFEYKFHENMPPKYIMDNSLEPFEYLKRLCYLGLINKYDEFSHEIEIFKIEDILDDSKFEILKEEIGKNITDTKKKLVDRVKYELNLINSMGFVDYFLIVWDFIKFCMEKSIPTGPGRGSVAGSIVAYVLNITKVDPIKYSLIFERFLNPERISMPDIDSDFCNERREEVISYVRDKYGDQNVSNIITFGTMAAKACIRDVGRAMNYPYGEVDKIAKMVPNMLNITIDLALLYNKELNDLYNNDLRVKKLIDISKRLEGLPRHTSIHAAGVIISPYNLTDLIPVKKDGDMLVTQFPMANLEELGLLKMDFLGLRTLTVINDCIKIIEKNKGIKIDLDNIDFDDQNVFNMIGDGKTCGVFQLESFGMTSFMKELKPNSIEDIIAGISLYRPGPMDEIPNYIKNKNNIGDIKYLTKELEDILNVTYGVIVYQEQVMEIVQKLSGYSLGRSDLVRRAMAKKKHEEMEKERKKFVYGYKDGEEIIKGCVNNGIDEKIAHKIFDQMVDFASYAFNKSHAAAYAIIAYETAYLMRYYKSEYICALLNSVINNMDKVCYYIRFGESMNIKIFPPCVNNSHNKFIVEGEYIYFGLSAIKNLGEGACEKIVYYREKYGKFKNEYDFFKACVKCSINKKGIESIIKSGALDVFNISRSYLLMNFEKIVDGISKEFRENLEGQMNLFGLIGREDDKTFKLNNRDDLYDDSDKNLLFEKEVLGIYISGHPIHKYKEILDKVCTNSISDFYDDDMKINDGYEVVIGGSVREFKKIITKNNSMMCFLYVEDKYSSIECVVFPKVYEKFNYLINDNSIVIIKGVFKKNDDVFKIIVNEIIGIEEYDRFKLYILCKSLKEITNSFNKAKDILISNRGHVNVNLYSLEGKKVFRVNDYGVNLSNSLICELNKVFSQEFVKVIITK
>NC_015913.1|WP_005807590.1|101731_103573_+|asparagine-synthase-(glutamine-hydrolyzing)
MCGITGFSNFNKDIRSEFNNILMMNDSLYHRGPDEFDYYKHKNVVLGHRRLSIVDPNGGKQPMQRIVNFHKYTIVYNGEIYNTDEIRDDLVSKGYSFYTYSDTEVVLINYIHYKEECVSKLNGIFAFCIFDEDRNCLFMARDQLGVKPIFYSFKDGYLIFGSEIKSLLKHPKVSPIVCGDGILDLLGLGPSRSLGEGIFKDVKEIPPAHYLFIYKDRITLKEYWRLESKEHNLTLEDTKEKLSLMLENAIKKQMVSDRGIFSFLSGGIDSSLISAVVSDEFNKEGKILDTFTVDYVDYDKDFEGNEFEVTSDKYFVKVVNESIKSNNRIITIKNEDLFYALEDGLYSSDIPSMADIDTSLYLFCKGIKNYGTVGLSGECADEIFGGYPWYLNEEDLKLNKFPWNRFSGIRKELFNDKIKNLDFDSYIKNKFDETLKDVCILDSDSELDAKIRKMTTLNVKWFMVTLLNRKDRMSMANSLEIRVPFADRELVEFSYNIPAKFKFLNGREKGILREVSRKFLPDSIIDRKKSPYPKTQSAIYTNLVVNELSNILDNKSNPIFEIIDEKSVRKLIESRGNSYTKPWFGQLMRGPQLMAYLIQINMWLKKYNINLSL
>NC_015913.1|WP_005807592.1|100737_101619_+|hypothetical-protein
MEKVNIAEINYKNYNNCLRITNNLVEVIVFMENTIRIVKYGYVNGNNQFEDILIDNDSRDIIGGGHSFSYIPQIDQNVDFIDNQGITYERISSGIRLIQNIEKWTQIRRVIEIIFYENSTKIKVIHKILSLNAFDINIAICSNTVVRNGGIEIIPFSIGNNRDVPNKSLVFWPYSNLKDSRVYLGDKYIAMKVNENICDRFRMGVNTDLRYVLYYNNNEMFVKEFDEIKGCYEYPNMGCKYESLITTNYLEMKSNSPIYKLSTNNYITHIEVWNIYKDINLDFIDKFIDQYNK
>NC_015913.1|WP_005807595.1|99800_100703_+|DNA-binding-protein-WhiA
MTFSYFVKTEILENCFRSYKQAVSELMGVVYGTRYTINNNEITVRIDNHLLVNYLDNMLNIINGFGYSVNEDNVKSNTYIFKSYYMYKLLLYVDNGEFKHNINLIIENKIIDRAYLIRGLFLICGSIINPNNSYHLEFCLYNYDLSYFLDLVLNFFCIKSKMIKRKDRFIIYVKEAESISQFLKVIGVHRSVLEFENIRVLKEYTNNKNRLKNCIQANEDKSIIASVKQVRAIMYIDKYIGLDKLSSKLKEIAMVRLKYKEAPLGELGKYLNPPIGKSGVLHRLKKIEKIASELEDKYGV
>NC_015913.1|WP_041568914.1|115046_115298_-|peptidase-S24
MSPTMDAGDVVIVRKQQDVNSGDIAIVCVNGDEATCKKIIKHKDGISLVSLNPRYEPMYYDKNDIADKPIHIIGKVVELRRRF
>NC_015913.1|WP_014017795.1|115640_116375_+|DUF3644-domain-containing-protein
MEEKEKLLKKSKEIFSLVSCMYCYYSGPYKIETVCILLCNAWELMLKAYIIGKKGKEGIVYKNKQNKGRTIGLNECISKVFTNKHDILRKHLESVIRYRNSVVHYTVDSFDLSLYSKIEYCIVNFKAKMCELHNVNMSDMIVNQANEEILKNDVDLYKYSKKSLCREINNVLKSLGIEFKIDSQSFELFDRVYGIKENKEYCLISNVNNRPSYRYSSRVLNFIVGLIQKNPNNIKEVLKNKIKK
>NC_015913.1|WP_014017796.1|117112_117826_-|helix-turn-helix-domain-containing-protein
MDTNNIEKKKLGDKIKRIRLMRGLSQDELAKRCGYKARSTINKIETGINDIPQSKIKIIAQALGIDESVLLNDQDHIEFINAQQPIQVTSSTKVISYKNGLGLNVQACVKIPILGTVIAGIPISAIEEIIGWEEISPKLASQGEYFALKIKGDSMSPTMDAGDVVIVRKQQDVNSGDIAIVCVNGDEATCKKIIKHKDGISLVSLNPRYEPMYYDKNDIVSKPIHIIGKVVELRRRF
>NC_015913.1|WP_014017797.1|117965_118169_+|DUF739-family-protein
MDNIRLVDCIHKSGLKHKYIAGQLSLSKQGWSNKINNRTEFRLSEIKRLCTLLNLDSKQRDHIFFED
>NC_015913.1|WP_041568926.1|118287_118503_-|helix-turn-helix-transcriptional-regulator
MDFKDRLKTLRLSNNLTQLDIANYLKINDRSYQNLEYGKSKPKYDTLIKLADYYNISIDYLVGRSDDPTRR
>NC_015913.1|WP_014017799.1|118614_118806_+|helix-turn-helix-transcriptional-regulator
MNNLKKIRNKAGLTQMYLSSLININVRSYQSIELGKSLPRVDRALAIAKILNTTVEELFGKDK
>NC_015913.1|WP_014017800.1|118930_119551_+|phage-antirepressor
MNDQTWFVGKDVARALGYANGSRDINRHVEIEDKVLRKLPQYQNGSLVSNTVLINESGLYSLILSSKLPKAKKFKRWVTSDVLPSIRNTGAYIASNRLDELDDRVKKLESKTVIGKAQKPIVGVNTSEIAFSLGISPKALFEFLRSTGVANRKWDKYELHDDYVGFGYIQNARVAYERCYEKRIKFWTLKGVWFVMDLYNKRQANN
>NC_015913.1|WP_014017801.1|119553_119772_-|helix-turn-helix-transcriptional-regulator
MFDFGNHLKGLRLKNNITQKDLAKAIGISERGIQNYELNARKPTFDILIALARFFDVSIDYLVGETTNPTRR
>NC_015913.1|WP_014017802.1|119889_120090_+|helix-turn-helix-transcriptional-regulator
MHNNLKPIRDKLGLTQNQVSDIAEITLRSYQNYEYSKRIPKVNIALDIAKALNTTVEELFSNDKLQ
>NC_015913.1|WP_005807558.1|120144_120363_+|helix-turn-helix-domain-containing-protein
MANDILYTVPEVSKLIKTNPSYVYTLIRLGLLPALKLGSLKVRRTSLLDFLERFEGKDLTDLEHIRDLETGV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_015913_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015913_2

116771-117068

Orphan

I-C

Consensus_repeat	Method
GTCGCACCTCACGCAGGTGCGTGGATTGAAATT	PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAATT	CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAATT	CRT

4 spacers

The CRISPR arrays of NC_015913_2

>merge|NC_015913|2|116771-117068|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATTTATTTGTCCAAATTCTAAGTTGTCAAATATTTTGTCGCACCTCACGCAGGTGCGTGGATTGAAATTAGTAGGCTTGTCCTCCTTACTTTTAAACTCCCGTCGCACCTCATACAGGTGCGTGGATTGAAATTAAGATTTTTTATTGATGTGTACATAATCACCCCTGTCGCACCTCACGCAGGTGCGTGGATTGAAATCTTTATAATGGATTTGCTTTATGAGTTATTTAGATGTCGCACCTCACGCAGGTGCGTGGATTGAAGGT

>NC_015913|2|2|116771-117001|PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAATT	TATTTGTCCAAATTCTAAGTTGTCAAATATTTT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATT	AGTAGGCTTGTCCTCCTTACTTTTAAACTCCC
GTCGCACCTCATACAGGTGCGTGGATTGAAATT	AAGATTTTTTATTGATGTGTACATAATCACCCCT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATC

>NC_015913|2|2|116771-117068|CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAATT	TATTTGTCCAAATTCTAAGTTGTCAAATATTTT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATT	AGTAGGCTTGTCCTCCTTACTTTTAAACTCCC
GTCGCACCTCATACAGGTGCGTGGATTGAAATT	AAGATTTTTTATTGATGTGTACATAATCACCCCT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATC	TTTATAATGGATTTGCTTTATGAGTTATTTAGAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAGGT

>NC_015913|2|2|116771-117068|CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATT	TATTTGTCCAAATTCTAAGTTGTCAAATATTTT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATT	AGTAGGCTTGTCCTCCTTACTTTTAAACTCCC
GTCGCACCTCATACAGGTGCGTGGATTGAAATT	AAGATTTTTTATTGATGTGTACATAATCACCCCT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATC	TTTATAATGGATTTGCTTTATGAGTTATTTAGAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_015913.1\|WP_005807588.1\|103673_107213_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235868
NC_015913.1\|WP_005807558.1\|120144_120363_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_015913.1\|WP_014017796.1\|117112_117826_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|234688
NC_015913.1\|WP_005807590.1\|101731_103573_+\|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|273676
NC_015913.1\|WP_041568914.1\|115046_115298_-\|peptidase-S24	unknown	unknown	gnl\|CDD\|224885
NC_015913.1\|WP_005807586.1\|107241_108201_+\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NC_015913.1\|WP_007439944.1\|109831_111217_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NC_015913.1\|WP_005807584.1\|108228_109650_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545
NC_015913.1\|WP_005807578.1\|112694_113999_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224031
NC_015913.1\|WP_014017802.1\|119889_120090_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_015913.1\|WP_014017800.1\|118930_119551_+\|phage-antirepressor	unknown	unknown	gnl\|CDD\|226144
NC_015913.1\|WP_014017799.1\|118614_118806_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_015913.1\|WP_005807580.1\|111269_112460_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NC_015913.1\|WP_014017795.1\|115640_116375_+\|DUF3644-domain-containing-protein	unknown	unknown	gnl\|CDD\|378842
NC_015913.1\|WP_005807554.1\|120632_120899_+\|hypothetical-protein	unknown	unknown	unknown
NC_015913.1\|WP_014017797.1\|117965_118169_+\|DUF739-family-protein	unknown	unknown	unknown
NC_015913.1\|WP_041568926.1\|118287_118503_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_015913.1\|WP_014017801.1\|119553_119772_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NC_015913.1\|WP_005807556.1\|120367_120547_+\|hypothetical-protein	unknown	unknown	unknown
NC_015913.1\|WP_005807576.1\|113999_114587_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_015913.1\|WP_005807588.1\|103673_107213_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235868	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.	0
NC_015913.1\|WP_005807558.1\|120144_120363_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	9.08849e-08
NC_015913.1\|WP_014017796.1\|117112_117826_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	2.09571e-29
NC_015913.1\|WP_005807590.1\|101731_103573_+\|asparagine-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|273676	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. [Amino acid biosynthesis, Aspartate family].	6.593e-144
NC_015913.1\|WP_041568914.1\|115046_115298_-\|peptidase-S24	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	1.77377e-17
NC_015913.1\|WP_005807586.1\|107241_108201_+\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NC_015913.1\|WP_007439944.1\|109831_111217_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	2.65994e-128
NC_015913.1\|WP_005807584.1\|108228_109650_+\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	0
NC_015913.1\|WP_005807578.1\|112694_113999_+\|AAA-family-ATPase	gnl\|CDD\|224031	COG1106, COG1106, Predicted ATPases [General function prediction only].	3.60856e-16
NC_015913.1\|WP_014017802.1\|119889_120090_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.10318e-10
NC_015913.1\|WP_014017800.1\|118930_119551_+\|phage-antirepressor	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	2.32285e-30
NC_015913.1\|WP_014017799.1\|118614_118806_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.63094e-11
NC_015913.1\|WP_005807580.1\|111269_112460_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.23087e-40
NC_015913.1\|WP_041568926.1\|118287_118503_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.12367e-13
NC_015913.1\|WP_014017801.1\|119553_119772_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	5.6844e-16
NC_015913.1\|WP_014017795.1\|115640_116375_+\|DUF3644-domain-containing-protein	gnl\|CDD\|378842	pfam12358, DUF3644, Protein of unknown function (DUF3644). This domain family is found in bacteria, and is typically between 65 and 80 amino acids in length.	2.53758e-16

>NC_015913.1|WP_014017795.1|115640_116375_+|DUF3644-domain-containing-protein
MEEKEKLLKKSKEIFSLVSCMYCYYSGPYKIETVCILLCNAWELMLKAYIIGKKGKEGIVYKNKQNKGRTIGLNECISKVFTNKHDILRKHLESVIRYRNSVVHYTVDSFDLSLYSKIEYCIVNFKAKMCELHNVNMSDMIVNQANEEILKNDVDLYKYSKKSLCREINNVLKSLGIEFKIDSQSFELFDRVYGIKENKEYCLISNVNNRPSYRYSSRVLNFIVGLIQKNPNNIKEVLKNKIKK
>NC_015913.1|WP_041568914.1|115046_115298_-|peptidase-S24
MSPTMDAGDVVIVRKQQDVNSGDIAIVCVNGDEATCKKIIKHKDGISLVSLNPRYEPMYYDKNDIADKPIHIIGKVVELRRRF
>NC_015913.1|WP_005807576.1|113999_114587_+|hypothetical-protein
MGGKKAQIQYLRCILICHGKSEKEFMETIKQNLRLKIHIESDKKGSKSIQINSLNKTLKNHKYGKRDNFLRYFEDIELIKGKITSEFKIFTLLDTDDKEKEINLIKYLNKEMFKEHHLYDHIVPIYNTPNLESVFEEIGHVFKNKGEARKREYKDLLKPYPTPKLARNYLKDLSGKFEKSKNTNLNHVINFLLNI
>NC_015913.1|WP_005807578.1|112694_113999_+|AAA-family-ATPase
MFTGIKLKNFKSLVDFEVKFPRNRKLVIIYGENGVGKSNFIDAFSILRKLVTGRPFDVDDFLELANLKFNHGLSNIDMDAEVITDLFKTSNLKRIIESCKTINSEGENMVLSFDFTLRGKKGSYIIETDDNRLISERLEYVYNKQIVEFFNVNNDEIYLNEKVIKNKEYYEELINNCEKYWGKNTLTSMIFKDIQSKNDKYMSKSLTKNMIEIIDYFSSLNISVSGQILFPGLHLGEGITQMSNQAELDKNEKILDDIFTRLYPDIKQVYYKKEIIDDGKINYKLYFKKLVGNKILDIDIERESKGTKQVLNITKQILYGLDKQVLIIDEFDTGIHDILAKSMLQSLYDSLDMQIIITTHNTLLIEAKDLCKNAYVLTHNIDGSKDMIAISDFEKRIHSNLNIRDRYLRGMYGGVPIPLDIDFSDYSDANLEDC
>NC_015913.1|WP_005807580.1|111269_112460_-|site-specific-integrase
MTGSVRKRGDKWYYSFEAARVDGKRKRIERVGGRTKKEAEAALRKALEDYENGEQLQKTNISVSDYMDLWFDAYVLLNCRYNTQRSYRLIIDKHIKPSLGILKLTSLTPGKLQDFINSKYLTGISKNHLNNIISLLSGSLNYSVHPMNFLKNNPMQYVKIPKYNNTKTTDKHKIITNDDFNAIIKRFPERSSFYIPLMIGYHTGCRIGEAMGLTWDDIDLDNNTININKLIYKKDTSWYFGEPKTTSSSRIINIGNTLKNALKYHKRYIDIKRLEYGEHYIKQYNINDKITTSSLNLKEHLLNMVCVKSNGMLLTPDSFKYASRVINYELGIPFNFHSLRHTHATLLVENGANIKDVQHRLGHNNIQTTLNTYTHNTDKLAKQSVDIFENIILPTY
>NC_015913.1|WP_007439944.1|109831_111217_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MVDVANKYIVKIEDYDSKGNGVSHIDDLVVFVPNTIVGEIVEICIEKVNKNFLRGRVNEVLSVSESRVLPICEIYEKCGGCNIQHMNYKEQIRFKESKIINTLNKIGDIRNIKMEKFYAMSIPYEYRNKVQVPFGLSDSGVKAGFYEKNTHNIINMDFCHIQFHEGNDIVKETREYIKKNNIKPYDESANYKKGCDYGLVRHLLIRKGYNTNEIMLVIVLTRDDEEFLNGYMDFILEKFKNIKTIIVNVNNEITNVILGKYERVLYGDGYIKDKINDFIFRIHSKSFFQVNTKQSEKLYSAAIEMCDLKFGDILLDAYCGIGTIGICASRKIKQVYGIEEVKESIVDANENKIINNIKNIEFIHGKVEDEIFNLVNSGVNINAVILDPPRKGVKERVLHKIRDINCRKIVYISCDVSTLSRDAKILNSLGYKIDKIRGVDMFCQTYHVETIVRFTLRPSGF
>NC_015913.1|WP_005807584.1|108228_109650_+|pyruvate-kinase
MRKTKIVCTIGPASDKYDILRELIEKGMNVMRLNFSHGDFEEHGNRIKLVRQISEELNKNVGIMLDTKGPEIRTKKFEGKVLLNQGDKFVIYTKEDIVGDSTRCSVTYEDLYKDVEVGGKILIDDGLVALEIEDVEDGKISCIVLNSGEISSNKGVNLPKSKIKLPALTEKDKNDLLFGIKNDVEYVAASFIRKSDDVIQIRKFLDLNGGDFIKIISKIENQEGLDNIDEIIDSSDGIMVARGDLGVEIPIENLPHWQKLIIKKCNDRGKFVITATQMLDSMIRNPRPTRAEASDVANAIHDGSDAVMLSGETANGKYPLEAYEIMDKIIVTTEQSLDYEGKLQKKLSKIEYKDVPNTIALFSCTTANEVGAKAILACTKSGATAKFVSRFRPECPIISITQMKKVARMLSIYWGVYTQTISETIDNTDMLIDLSVDKAKKEYNFKDGDLVVVSASVPANFKGHTNMLKVHEI
>NC_015913.1|WP_005807586.1|107241_108201_+|6-phosphofructokinase
MKKIAILTSGGDAPGMNAAVRSVVRYALSKDIEVLGIHRGYHGLLHGEIESLSRRSVSDIIDRGGTFLKTARCLEFKQEEVRAQAYEILKSHNVDGLVVVGGDGSFTGAHLLSKFGLSTVGIPGTIDNDLPYTDYTIGFDTALNTILDAVRKLRDTSSSHERVSIVEVMGRNCGDLALYSALAGGAEAVIVPEYPFNREGLCKTILESKKNKKLHSLIILAEGAGNAEDLRKYIQQKIGLDTRATVLGHIQRGGIPTGRDRVLASVMGRKAVDTLLSNEVCAKVIGVKENTVFDMDIEEALKIEKKFNKDLYDLVNKLV
>NC_015913.1|WP_005807588.1|103673_107213_+|DNA-polymerase-III-subunit-alpha
MNDFVHLHVHSEFSLLDSSCKIRNLVERAKELGMTSLAITDHGVMYGCLEFYKACKMYGIKPIIGCEIYVANKSMDIKNADKDNFTSHLVLLVKDEIGYRNLLKIVSDSFIRGFYYKPRVDIEYLKEHSEGLIALSACLSGGISKYILRNDIDGAKNLSIIYKEIFKEDFYLEIQDHGIEDQKKVNNLLLEFSSELDIKLVVTNDVHYIKKDDANAHDVLICIQTGSNVDEERRMKYHGDQFYLKSKDEMYEAFPNYMDGLLNTIEIRDKCNFEYKFHENMPPKYIMDNSLEPFEYLKRLCYLGLINKYDEFSHEIEIFKIEDILDDSKFEILKEEIGKNITDTKKKLVDRVKYELNLINSMGFVDYFLIVWDFIKFCMEKSIPTGPGRGSVAGSIVAYVLNITKVDPIKYSLIFERFLNPERISMPDIDSDFCNERREEVISYVRDKYGDQNVSNIITFGTMAAKACIRDVGRAMNYPYGEVDKIAKMVPNMLNITIDLALLYNKELNDLYNNDLRVKKLIDISKRLEGLPRHTSIHAAGVIISPYNLTDLIPVKKDGDMLVTQFPMANLEELGLLKMDFLGLRTLTVINDCIKIIEKNKGIKIDLDNIDFDDQNVFNMIGDGKTCGVFQLESFGMTSFMKELKPNSIEDIIAGISLYRPGPMDEIPNYIKNKNNIGDIKYLTKELEDILNVTYGVIVYQEQVMEIVQKLSGYSLGRSDLVRRAMAKKKHEEMEKERKKFVYGYKDGEEIIKGCVNNGIDEKIAHKIFDQMVDFASYAFNKSHAAAYAIIAYETAYLMRYYKSEYICALLNSVINNMDKVCYYIRFGESMNIKIFPPCVNNSHNKFIVEGEYIYFGLSAIKNLGEGACEKIVYYREKYGKFKNEYDFFKACVKCSINKKGIESIIKSGALDVFNISRSYLLMNFEKIVDGISKEFRENLEGQMNLFGLIGREDDKTFKLNNRDDLYDDSDKNLLFEKEVLGIYISGHPIHKYKEILDKVCTNSISDFYDDDMKINDGYEVVIGGSVREFKKIITKNNSMMCFLYVEDKYSSIECVVFPKVYEKFNYLINDNSIVIIKGVFKKNDDVFKIIVNEIIGIEEYDRFKLYILCKSLKEITNSFNKAKDILISNRGHVNVNLYSLEGKKVFRVNDYGVNLSNSLICELNKVFSQEFVKVIITK
>NC_015913.1|WP_005807590.1|101731_103573_+|asparagine-synthase-(glutamine-hydrolyzing)
MCGITGFSNFNKDIRSEFNNILMMNDSLYHRGPDEFDYYKHKNVVLGHRRLSIVDPNGGKQPMQRIVNFHKYTIVYNGEIYNTDEIRDDLVSKGYSFYTYSDTEVVLINYIHYKEECVSKLNGIFAFCIFDEDRNCLFMARDQLGVKPIFYSFKDGYLIFGSEIKSLLKHPKVSPIVCGDGILDLLGLGPSRSLGEGIFKDVKEIPPAHYLFIYKDRITLKEYWRLESKEHNLTLEDTKEKLSLMLENAIKKQMVSDRGIFSFLSGGIDSSLISAVVSDEFNKEGKILDTFTVDYVDYDKDFEGNEFEVTSDKYFVKVVNESIKSNNRIITIKNEDLFYALEDGLYSSDIPSMADIDTSLYLFCKGIKNYGTVGLSGECADEIFGGYPWYLNEEDLKLNKFPWNRFSGIRKELFNDKIKNLDFDSYIKNKFDETLKDVCILDSDSELDAKIRKMTTLNVKWFMVTLLNRKDRMSMANSLEIRVPFADRELVEFSYNIPAKFKFLNGREKGILREVSRKFLPDSIIDRKKSPYPKTQSAIYTNLVVNELSNILDNKSNPIFEIIDEKSVRKLIESRGNSYTKPWFGQLMRGPQLMAYLIQINMWLKKYNINLSL
>NC_015913.1|WP_014017796.1|117112_117826_-|helix-turn-helix-domain-containing-protein
MDTNNIEKKKLGDKIKRIRLMRGLSQDELAKRCGYKARSTINKIETGINDIPQSKIKIIAQALGIDESVLLNDQDHIEFINAQQPIQVTSSTKVISYKNGLGLNVQACVKIPILGTVIAGIPISAIEEIIGWEEISPKLASQGEYFALKIKGDSMSPTMDAGDVVIVRKQQDVNSGDIAIVCVNGDEATCKKIIKHKDGISLVSLNPRYEPMYYDKNDIVSKPIHIIGKVVELRRRF
>NC_015913.1|WP_014017797.1|117965_118169_+|DUF739-family-protein
MDNIRLVDCIHKSGLKHKYIAGQLSLSKQGWSNKINNRTEFRLSEIKRLCTLLNLDSKQRDHIFFED
>NC_015913.1|WP_041568926.1|118287_118503_-|helix-turn-helix-transcriptional-regulator
MDFKDRLKTLRLSNNLTQLDIANYLKINDRSYQNLEYGKSKPKYDTLIKLADYYNISIDYLVGRSDDPTRR
>NC_015913.1|WP_014017799.1|118614_118806_+|helix-turn-helix-transcriptional-regulator
MNNLKKIRNKAGLTQMYLSSLININVRSYQSIELGKSLPRVDRALAIAKILNTTVEELFGKDK
>NC_015913.1|WP_014017800.1|118930_119551_+|phage-antirepressor
MNDQTWFVGKDVARALGYANGSRDINRHVEIEDKVLRKLPQYQNGSLVSNTVLINESGLYSLILSSKLPKAKKFKRWVTSDVLPSIRNTGAYIASNRLDELDDRVKKLESKTVIGKAQKPIVGVNTSEIAFSLGISPKALFEFLRSTGVANRKWDKYELHDDYVGFGYIQNARVAYERCYEKRIKFWTLKGVWFVMDLYNKRQANN
>NC_015913.1|WP_014017801.1|119553_119772_-|helix-turn-helix-transcriptional-regulator
MFDFGNHLKGLRLKNNITQKDLAKAIGISERGIQNYELNARKPTFDILIALARFFDVSIDYLVGETTNPTRR
>NC_015913.1|WP_014017802.1|119889_120090_+|helix-turn-helix-transcriptional-regulator
MHNNLKPIRDKLGLTQNQVSDIAEITLRSYQNYEYSKRIPKVNIALDIAKALNTTVEELFSNDKLQ
>NC_015913.1|WP_005807558.1|120144_120363_+|helix-turn-helix-domain-containing-protein
MANDILYTVPEVSKLIKTNPSYVYTLIRLGLLPALKLGSLKVRRTSLLDFLERFEGKDLTDLEHIRDLETGV
>NC_015913.1|WP_005807556.1|120367_120547_+|hypothetical-protein
MIRKQIESLIGQVDDRTYAEALKMTEADIKANRLSFNLKTQIEDFILILINSIKIIRRK
>NC_015913.1|WP_005807554.1|120632_120899_+|hypothetical-protein
MDPLTDELVIAYSVQPNDTEVKIVKLKLEEWDKDELKDILAGDFVTFETLEVVTPEELSDVVSDWISFNDDLTDDEFIDSCVKNITKQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_015913_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_015913_3

745286-746183

TypeI

I-C

Consensus_repeat	Method
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CRT

13 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_015913_3

>merge|NC_015913|3|745286-746183|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAATTCAAGTCCAATAAAATTACCATTAGAATCAAAAGGTCGCACCTCACGCAGGTGCGTGGATTGAAATTGGGGAATTGTATTCAGTTGAATCATCTGCATATTGTCGCACCTCACGCAGGTGCGTGGATTGAAATTTTCAATCAATAAATTTTCCAGCTTTTCGAAATGTCGCACCTCACGCAGGTGCGTGGATTGAAATCATCATATATTTACTAGTTTTTCCAACTCTTAAACGTCGCACCTCACGCAGGTGCGTGGATTGAAATAAACTCATATGTATTATCATTAAACGCTCTTATACGTCGCACCTCACGCAGGTGCGTGGATTGAAATTAAGTATATTAGACAACCATTTAATTATACAAAAGGTCGCACCTCACGCAGGTGCGTGGATTGAAATAAAAATATATGTATCGTCATCAAACATCAACAAGTGTCGCACCTCACGCAGGTGCGTGGATTGAAATTTTAGTTTGGATATATGATTTAATAGCTCCTATTGTCGCACCTCACGCAGGTGCGTGGATTGAAATTTCATCTATACAAGATAAAATTTTATTTTCTATTGTCGCACCTCACGCAGGTGCGTGGATTGAAATATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATATGTCGCACCTCACGCAGGTGCGTGGATTGAAATTATGGTGGCTTGATAGGCTCCAACACAAGTAAAAAGTCGCACCTCACGCAGGTGCGTGGATTGAAATAAAGTGTTTTGTAACTATGATATAGATGTTAAAAGTCGCACCTCACGCAGGTGCGTGGATTGAAATGTATAAATCTGCCCTAATTAAAAATCTTATAGTTGGTCGCACCTCACGCAGGTGCGTGGATTGAGAA

>NC_015913|3|3|745286-746116|PILER-CR
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCAAGTCCAATAAAATTACCATTAGAATCAAAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TGGGGAATTGTATTCAGTTGAATCATCTGCATATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTCAATCAATAAATTTTCCAGCTTTTCGAAAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CATCATATATTTACTAGTTTTTCCAACTCTTAAAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAACTCATATGTATTATCATTAAACGCTCTTATAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TAAGTATATTAGACAACCATTTAATTATACAAAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAAATATATGTATCGTCATCAAACATCAACAAGT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTAGTTTGGATATATGATTTAATAGCTCCTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTCATCTATACAAGATAAAATTTTATTTTCTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TATGGTGGCTTGATAGGCTCCAACACAAGTAAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAGTGTTTTGTAACTATGATATAGATGTTAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT

>NC_015913|3|3|745286-746183|CRISPRCasFinder
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCAAGTCCAATAAAATTACCATTAGAATCAAAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TGGGGAATTGTATTCAGTTGAATCATCTGCATATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTCAATCAATAAATTTTCCAGCTTTTCGAAAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CATCATATATTTACTAGTTTTTCCAACTCTTAAAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAACTCATATGTATTATCATTAAACGCTCTTATAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TAAGTATATTAGACAACCATTTAATTATACAAAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAAATATATGTATCGTCATCAAACATCAACAAGT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTAGTTTGGATATATGATTTAATAGCTCCTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTCATCTATACAAGATAAAATTTTATTTTCTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TATGGTGGCTTGATAGGCTCCAACACAAGTAAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAGTGTTTTGTAACTATGATATAGATGTTAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GTATAAATCTGCCCTAATTAAAAATCTTATAGTTG
GTCGCACCTCACGCAGGTGCGTGGATTGAGAA

>NC_015913|3|3|745286-746183|CRT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TCAAGTCCAATAAAATTACCATTAGAATCAAAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TGGGGAATTGTATTCAGTTGAATCATCTGCATATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTCAATCAATAAATTTTCCAGCTTTTCGAAAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	CATCATATATTTACTAGTTTTTCCAACTCTTAAAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAACTCATATGTATTATCATTAAACGCTCTTATAC
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TAAGTATATTAGACAACCATTTAATTATACAAAAG
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAAATATATGTATCGTCATCAAACATCAACAAGT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTTAGTTTGGATATATGATTTAATAGCTCCTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TTCATCTATACAAGATAAAATTTTATTTTCTATT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	ATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATAT
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	TATGGTGGCTTGATAGGCTCCAACACAAGTAAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	AAAGTGTTTTGTAACTATGATATAGATGTTAAAA
GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	GTATAAATCTGCCCTAATTAAAAATCTTATAGTTG
GTCGCACCTCACGCAGGTGCGTGGATTGAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_015913.1\|WP_005806405.1\|736428_737358_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
NC_015913.1\|WP_007440333.1\|733545_734484_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181922
NC_015913.1\|WP_005806381.1\|747806_749726_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|273919
NC_015913.1\|WP_005806403.1\|737500_739732_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_015913.1\|WP_041568929.1\|743141_743783_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NC_015913.1\|WP_014017909.1\|739749_740430_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NC_015913.1\|WP_005806379.1\|749751_751167_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NC_015913.1\|WP_014017911.1\|742264_743128_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_015913.1\|WP_014017915.1\|752021_752447_-\|hypothetical-protein	unknown	unknown	unknown
NC_015913.1\|WP_005806366.1\|755292_755712_+\|DUF2871-domain-containing-protein	unknown	unknown	gnl\|CDD\|378551
NC_015913.1\|WP_005806385.1\|746883_747309_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_015913.1\|WP_005806369.1\|754160_754502_+\|hypothetical-protein	unknown	unknown	unknown
NC_015913.1\|WP_005806371.1\|753516_754122_+\|hypothetical-protein	unknown	unknown	unknown
NC_015913.1\|WP_005806368.1\|754589_755144_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_015913.1\|WP_005806373.1\|752706_753039_+\|DUF898-family-protein	unknown	unknown	gnl\|CDD\|368695
NC_015913.1\|WP_014017914.1\|751228_751963_-\|DUF1624-domain-containing-protein	unknown	unknown	gnl\|CDD\|377915
NC_015913.1\|WP_014017910.1\|740426_742262_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_015913.1\|WP_014017913.1\|743783_744812_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_015913.1\|WP_005806407.1\|736027_736423_-\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NC_015913.1\|WP_005806392.1\|744824_745115_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NC_015913.1\|WP_005806405.1\|736428_737358_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	4.4837e-134
NC_015913.1\|WP_007440333.1\|733545_734484_-\|hypothetical-protein	gnl\|CDD\|181922	PRK09512, rbsC, ribose ABC transporter permease protein; Reviewed.	1.9038e-112
NC_015913.1\|WP_005806381.1\|747806_749726_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NC_015913.1\|WP_005806403.1\|737500_739732_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.64572e-58
NC_015913.1\|WP_041568929.1\|743141_743783_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.28316e-26
NC_015913.1\|WP_014017909.1\|739749_740430_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.10117e-104
NC_015913.1\|WP_005806379.1\|749751_751167_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NC_015913.1\|WP_014017911.1\|742264_743128_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	8.48919e-150
NC_015913.1\|WP_005806366.1\|755292_755712_+\|DUF2871-domain-containing-protein	gnl\|CDD\|378551	pfam11070, DUF2871, Protein of unknown function (DUF2871). This family of proteins has no known function.	4.18873e-49
NC_015913.1\|WP_005806385.1\|746883_747309_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.71808e-11
NC_015913.1\|WP_005806368.1\|754589_755144_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.05416e-11
NC_015913.1\|WP_005806373.1\|752706_753039_+\|DUF898-family-protein	gnl\|CDD\|368695	pfam05987, DUF898, Bacterial protein of unknown function (DUF898). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative membrane proteins.	1.01089e-08
NC_015913.1\|WP_014017914.1\|751228_751963_-\|DUF1624-domain-containing-protein	gnl\|CDD\|377915	pfam07786, DUF1624, Protein of unknown function (DUF1624). These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.	1.35887e-32
NC_015913.1\|WP_014017910.1\|740426_742262_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	3.56052e-178
NC_015913.1\|WP_014017913.1\|743783_744812_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	2.04799e-175
NC_015913.1\|WP_005806407.1\|736027_736423_-\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	5.43277e-72
NC_015913.1\|WP_005806392.1\|744824_745115_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.23161e-25

>NC_015913.1|WP_005806392.1|744824_745115_+|CRISPR-associated-endonuclease-Cas2
MLILVTYDVGLNFDDGAKRLRKVSKICENYGIRVQNSVFECVVDNLQFEMLKSDIDKVIDKERDSVRYYNLGNSGRKKVIHIGNKHSIDVEDVIII
>NC_015913.1|WP_014017913.1|743783_744812_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNVLYVTNEDAYLSKDGEDISIRISDQKPIKIPSHNLEGIVCFGYQGASTKLMAMCAEKNIGMSFHTPFGKFLCRVQGRVSGNILLRKKQYKISDDENKSCLIAKNFIIGKLVNYKNVLNRFKRDYRDKFDENMRRSIEYLSDTIKSVSKSEDLNSLRGLEGIGSKYYFDVFDNLILVDNKSFRFDSRNKRPPLDRVNALLSFVYVILSHDIESSLESVGLDPQAGFLHRDRPGRSGLALDMMEELRSYLCDRFVLKLINTRVIKENDFIVKENGSVFILEEARKNILTAWQKRKKDFIIHPFLNEKIEVGLIPYVQSLLLARYLRGDLEEYPPYLMK
>NC_015913.1|WP_041568929.1|743141_743783_+|CRISPR-associated-protein-Cas4
MISGIQHFIFCPRQWALIHIEQIWEDNVRTFNGHKFHKKVDDPYIFEKRGEIIISRSLPLISHKLSVKGISDCVEFHMRNDNLGAKLVGRNGSYDVIPIEYKVGDIKKDDSDISQLCIQAICLEEMFDTTIEKGYLYYGKLRRRVEVNFTNELRENIKELVEKMRYYFDNGVTPKARYKKQCINCSLYDICLPKLNCSYSKVKNYIDSYVEDI
>NC_015913.1|WP_014017911.1|742264_743128_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MLLSKRYEFVILFDVENGNPNGDPDSGNMPRIDPETGHGIVTDVCIKRKIRNYIEVVEGERQGFDIYVKNGAVLNEQHRKAYEAFELKPENKKLPKDEKLAKELTGYMCKNFYDIRSFGAVMSNEVNCGQVRGPIQLNFGRSIDPIFSQDLTITRCAVTNMKDLEKGQTMGRKQIVPYALYRMEGYVSAHLAQKVTGFNEEDLNILWQSIINMFEYDRSASHGKMATRKLYVFEHETALGNAPSHKLFDLIEVERKDKSKPSRHFNDYEISIDRDSLPKGVDLIEKL
>NC_015913.1|WP_014017910.1|740426_742262_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILKELVDCYDLMVNSDKFEVSDSNFSNEKVSFKITIDEDGLITKIIDLREGSGAKKKTILVNVPYQSGRTSGIKPYFLCDNAKYFFGYEIDSKSLELKRCDQHIEASKNLHMEILENSYSKYKLILERFFDNHDKNLEIIKEKDPEVLKGGSIILRLKDDMKCIHEQGEVKKAFALYRQNKFENVEEVRGTCLINGDSNAPIAKIHKTIKGVSGSSISGAMIVSFNASSFESYGKSQGYNASISTENEFKYTTALNKLLSTDDNNMYLSGNTIVFWSSKLGAEEEQIIPAFMKDDDEVEDDNGETGGAKYNQEGIDKIESIIKLIKQGKTVNVDRINLDDSVNMYVLGLYGSRSRIFVRFWFKNSLEDFIKLTNKHFEDTKLKKKRKFSKKDFIYEEVGVKLSSILKTITPYGKSQNTPKTLINSLFKSILTGGVYPISIYNKILERIRAESGEDFAINHTRISFIKGYLKRYYRLNNLKDKEEEVTVSLNKESTNIAYNLGRIFAILEKIQMDSSNGATNIREKYLSSASSTPKSIFPNLLNLAQYHIAKINKENNTKFNYYDKVIGEILLNVNEFPAVFSSDEQGMFILGYYHQREDIYIAKKDKEEN
>NC_015913.1|WP_014017909.1|739749_740430_+|type-I-C-CRISPR-associated-protein-Cas5
MGFTLRVWGDYACFTRPEMKVERVSYDVITPSAARAIFEAIHWKPAIRWVIDEINVIKPIKFQTIMRNEVESVMSTQSIKKSINNKEEQFYIDSNKVRQQRNSMVLKDVEYIIKAHFEMTKHAGGSDDEKKHYNIFLRRARNGECFSQPYFGCREFSCNFELLENEDLPLNIQETRDLGWMLYDIDFMKKGDSYKGVKEYNPKFFRAKMIKGKVTIPKNLQMEVNK
>NC_015913.1|WP_005806403.1|737500_739732_+|CRISPR-associated-helicase/endonuclease-Cas3
MKYTEKLARRIEKEDGKIEYQKLIDHICGVSEFSEEFVSKFFLKNSGKILSILHDLGKYSDEFQDRIRGANIRVDHSTAGAIICDDLEKEFKGRGEYVIYKIFKYIIIGHHSGLLNYGTEMDDEGTISSRLNKRDILCDFSDWENEISIDDIKQINFSEEVLGFFKNNFSVQMLIRFLFSSLVDSDRLDAQRFVEGENSIVNSKKLMSLEEMLNVFNDFMKSKRLQESDNPINLIRNEIFNDCINKSRGDRGFYSLCVPTGGGKTLSSLGFALNHAKQNGHDRIIYSLPFTSIIEQNARVYSEIFGEENVLEHHCNFSFSNEIGEDEYSENQLKYKLAIENWDMPLIVTTNVQLFESMYSNKPSSARKLHNIYNSIIILDEAQVIPNEYLKPCIKALEELVRNYSCTVLFCTATQPEFKKNGLIENFDVVEIIDDTYKLFDDLKRVSGKFIGKKSVEDICNEMNSHKQVLTIVNTKKHAKEIFENLGESEGNFHLSTNMYPNHRKEVIKIIRERLKNGEECRVVSTQLIEAGVDVDFPVVFRSIAGIDSIVQAAGRCNREGKQKNSTVYVFKPEEESHLGLGYLKLTSQIGEGIIDDFEDFLSIDAISKYFFELFIDTDHRQDKHKILKMINKHKKLEINYDFREINDEFRFIENLGAQVIVPINEGEKFLNILKYSNRGVKSVLRKLSGCSINIPNYILRELLRDGCVEQFSDDIFILKNIGMYDLKIGFDKDNLKNYEYII
>NC_015913.1|WP_005806405.1|736428_737358_-|ribokinase
MNKVCVLGSLNMDLVLKVNDIPKIGETILSNSYEKIAGGKGANQAIAAKRCGADVSMIAKIGKDENGRILKGKLKEDGIDVSCIFEDEQNPTGLALIMVNKNGNNSIIVVPGSNMKINDSEINKSISKIKESDILIAQFETNEEMTLKSFQKAKEFNKITILNPAPAKKIDIELLKLTDIIIPNETEAEVLTRIKITSIDDAKRAGKFFINQGVKFAIITLGENGALIIGNDFYELVKSFKVNAVDTTAAGDSFIGALSSKLNFKNLTRETLKESVYFGNKVSSITVQRKGAQPSIPYLEEVKKIYKEN
>NC_015913.1|WP_005806407.1|736027_736423_-|D-ribose-pyranase
MKKTCLLNNSISSVISKMGHTDMIAIGDCGLPIPKETKRIDLALTKGIPSFLDTLKTTLTELEIEEIIIAKETEETSPKIFNEIKNLIGNAKITFVSHEIFKTNLKECKAVIRTGEQTPYANIILKSGVVF
>NC_015913.1|WP_007440333.1|733545_734484_-|hypothetical-protein
MNNNFKEILDKYKSLIGLIVLCVVITIVSPAFMTLSNITNIFTQVSTNAIIAIGMTFVILTGGIDLSVGSTVAISGALAASILKSTNNIPLAILVAAITGIVIGLINGILISKGKLQAFIVTLATMTIFRGATLVFTNGTPISKLSETFVKIGNGKIGFIPIPVIITIVILIISIYLLTQTRFGRYLYALGGNEDSAKLSGINTNKIKTLVYVISGFASSIAGIIITSRIGSASPNAGTSFELDAIAAVVIGGTSLSGGEGKITGTIIGALIIGVLNNGLNLMNVSPFYQSIVKGLVILIAVLLDKKSRKKA
>NC_015913.1|WP_005806385.1|746883_747309_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MIVSYPAVFYKYQEGNYGVSLPDFDVATCGEDLEDAIKMAIECLAGEIKWCKEQGEEIPKPTLDLDLVEVDERDEENNYVEFIKQIITVDADEYAKKYFNKSVKKNLTIPKWLNDEAVALNINFSKVLQKALLDEINRLKD
>NC_015913.1|WP_005806381.1|747806_749726_+|PTS-glucose-transporter-subunit-IIA
MDYKKIAGDIIQNVGGKENIKGMTYCFTRLRFVLKDSKKVDKAVIERLEGVISVVIAGGQFQVVLGNKVTKIHDAAVELLGGEVGESGDTSHVSAEKQSIGNVIIQKLGEIFTPLVPAIAAAGLIKGLLAAAAKIPGFDSTASTYVIMNTASNIIFYFMPIFLAFTTAKALKCNTIIAMMLGGFICHPTIDAIVQDVATKSNIFGLPVIKMAFTVGESSRVFAYTESVIPIILGVIVLSFLEKFLKKYVPEILQLILVPGISLIVMVPVMLVVVGPVGIYVGYIVQFLYTALYGFSPILGGIIVGGLWGICVIFGAHRALLPIGLNDVALTGTNTLMCFAGSANFAQAGAALGVMFKTKSANLKQVSASAALSAWLVGVTEPAVYGCNLRLKKPMICAVIAGAVGGAIMGIGHAVNTGFANNGILTIMSYWGEGTSFGQFVAYILGICVAFFGSAVLTYIVGFEDDPIATPVVQSAIDTPTDNVTEVSGDTVLVSPVKGSAVALSQVDDKVFSTGMLGQGYGVIPTEGKIVAPADCQIQVIHNTNHAVGLLTDDGVELLIHVGIDTVKLNGTHFTRVSKDGTHVAKGTTLLTFDIDKIKAAGYDTTVVIIVTNSDDYSEIRTITTGQADSSKNAIAVVR
>NC_015913.1|WP_005806379.1|749751_751167_+|glycoside-hydrolase-family-1-protein
MKQKFPENFLWGASSSAFQIEGGWDEDGKGKTVADFNSFKRSDKQADTKVASDFYHHWKEDIAMMKELGMQIYRFSLSWARIVPDGDGDINAAGIDFYNKVIDELIANGIQPFVTLYHFDLPYALVEKYNGWECRNCAFAFERYARVCFKEFGDRVKYWQVINEQNLMIRVNERMNIYVDDLWEADRIRAQMDYHMFLGHALAVNSCHELVEGGKVGPAVSSTCTYPLTNKPEDVWAAKMNDWLKTNYCLEMHINGEYPGYYMRYLRERNIVPKMEPEDVAILKSAKIDYIALNYYRTLCASYLPASEEHPIGERVYRDNEVDFDQYGYCRNEKNANLSASEYGAQIDPMGLRIVLNEYYRRYHLPMIITENGLGMADVLTEDGKVHDSYRIDYIRSHIQACANAIEDGVELIGYSPWSVMDLLSSHQGFRKRYGFIYVDRDDFDVKQLRRIKKDSFYWYKHVIETNGEEL
>NC_015913.1|WP_014017914.1|751228_751963_-|DUF1624-domain-containing-protein
MNEKRYFILDGIRGFAVINMIIYHFIWDLVYIFRFDIPWFESEISYIWQQFICYTFIFISGFCEPLGTRKLKRGIIILGLGILIEIVTMIATPENRVRFGILTLLGSCAILIIPAKKFLEKFPSIFGLILSIALFLLTKNINDGYLGFNNLNLIKLPSNLYKNSITTYLGFPMPNFYSTDYFSLMPWIFLYISGYFSYQIFKRQGFLKYLKISKIKSLEWIGRNSLALYVIHQPLIYFLIILFL
>NC_015913.1|WP_014017915.1|752021_752447_-|hypothetical-protein
MNTLRKIIKNTIIACIPFTILSTINANSSPLRRSKSLPNITFNNMFNENFRKFFEFGQPIMTTRTSASVSNLNDTDDFQKLRNEMVFSNNARAMQNGIFPRPMWKLYLDGSDFVDTYTGLKMPRVNNANISNATKVQYFFE
>NC_015913.1|WP_005806373.1|752706_753039_+|DUF898-family-protein
MRPWYFEESEFDGKLAELLGINILSFLLIIVTLGIGFSWAMCMKEKYRINHTIINGQRLSFVGRGGDLFVNWLKWILLTIITLGIYGFLLSIKLRQWKVRNTIFDSYKVG
>NC_015913.1|WP_005806371.1|753516_754122_+|hypothetical-protein
MLIKLLIMMFIVAGIGVSTVSCGSNNNTNSTSNVMNNQDSTNVEDKVSEPKKEDKKDMTSAELDEALNNQPVKIIRTEYISQEDQFLRPDLLSAVFQNDSGVDIKNAVLGYVAWDSNNLPVKIQSQYDFTDGEYFKKVNYSDVNLVNGASYGENGGLSIGNDNIAKFKAIVVSYTDFDGNIWDNPLLEEFQKLYEDKKLAE
>NC_015913.1|WP_005806369.1|754160_754502_+|hypothetical-protein
MKRSKLLLVSAILSTLYLIYIFIYFFNGISSSSNGAEALGVGLAGVLVAPHILFVGLGVLFNWIGWGMNKRWAALVSGILYFVSIFLMILYAIFVIVQVILCFVGYAKMKKEG
>NC_015913.1|WP_005806368.1|754589_755144_+|TetR/AcrR-family-transcriptional-regulator
MNTVVTSKEDILKASRELIRKQVCSVINIRSVAAACGVSVGSIYNYFDSKAELEGATIESIWYEIFQCKGSEVFKDTQDYIRWMYNQMEYGCQQYPGFFTFHSLSFMYEDKSSAKWRMQRVWQYIIDRLCCVLKQDKRIRIDAFTKQFTVEKFADVLFSLILSNLLKKDYNPATVLEIINRTIY
>NC_015913.1|WP_005806366.1|755292_755712_+|DUF2871-domain-containing-protein
MKRYINMAILYSILAMVGGVFYREFTKFNVYTEKTVLSVIHTHYFFLGMAFFLLLLLLEKSFSFTNAKTVRILTVYHIGLNLTVAMFVVRGIIQVFSYVLSAGINAAISGIAGIGHILLGVSIVLLLLQIRDSVLRVQA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015913_1	1.2\|114868\|33\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	114868-114900	33	AY682195	Lactobacillus plantarum bacteriophage LP65, complete genome	97454-97486	7	0.788
NC_015913_1	1.2\|114868\|33\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	114868-114900	33	NC_006565	Lactobacillus phage LP65, complete genome	97454-97486	7	0.788
NC_015913_3	3.1\|745318\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745318-745351	34	MT773556	Myoviridae sp. isolate BML_4 genomic sequence	92365-92398	7	0.794
NC_015913_3	3.1\|745318\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745318-745351	34	MT773556	Myoviridae sp. isolate BML_4 genomic sequence	99224-99257	7	0.794
NC_015913_3	3.3\|745451\|33\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745451-745483	33	JQ660954	Clostridium phage PhiS63, complete genome	5127-5159	7	0.788
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	MT074137	Bacteroides phage DAC16, complete genome	110915-110948	7	0.794
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	MT074142	Bacteroides phage DAC23, complete genome	114749-114782	7	0.794
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	MT074141	Bacteroides phage DAC22, complete genome	115010-115043	7	0.794
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	MT074146	Bacteroides phage SJC03, complete genome	103948-103981	7	0.794
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	MT074139	Bacteroides phage DAC19, complete genome	114812-114845	7	0.794
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	MT074140	Bacteroides phage DAC20, complete genome	114811-114844	7	0.794
NC_015913_3	3.1\|745318\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745318-745351	34	KP211958	Cyanophage P-TIM40, complete genome	77839-77872	8	0.765
NC_015913_3	3.8\|745784\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745784-745817	34	MT774389	CrAssphage cr116_1, complete genome	47795-47828	9	0.735
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	MT774393	CrAssphage cr127_1, complete genome	20422-20455	9	0.735
NC_015913_3	3.1\|745318\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745318-745351	34	NC_020292	Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence	109594-109627	10	0.706
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	158653-158686	11	0.676
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	158693-158726	11	0.676
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	479175-479208	11	0.676
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	248488-248521	11	0.676
NC_015913_3	3.9\|745850\|34\|NC_015913\|PILER-CR,CRISPRCasFinder,CRT	745850-745883	34	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	342173-342206	11	0.676

1. spacer 1.2|114868|33|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to AY682195 (Lactobacillus plantarum bacteriophage LP65, complete genome) position: , mismatch: 7, identity: 0.788

tacgtagttctataactttaccaattatgtgta	CRISPR spacer
ttccttcatctataactttaccaattaggtcta	Protospacer
* * *   ******************* ** **

2. spacer 1.2|114868|33|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to NC_006565 (Lactobacillus phage LP65, complete genome) position: , mismatch: 7, identity: 0.788

tacgtagttctataactttaccaattatgtgta	CRISPR spacer
ttccttcatctataactttaccaattaggtcta	Protospacer
* * *   ******************* ** **

3. spacer 3.1|745318|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to MT773556 (Myoviridae sp. isolate BML_4 genomic sequence) position: , mismatch: 7, identity: 0.794

tcaagtccaataaaattaccattagaatcaaaag	CRISPR spacer
cgatttacaataaaattaccatttgtatcaaaag	Protospacer
. *  * **************** * ********

4. spacer 3.1|745318|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to MT773556 (Myoviridae sp. isolate BML_4 genomic sequence) position: , mismatch: 7, identity: 0.794

tcaagtccaataaaattaccattagaatcaaaag	CRISPR spacer
cgatttacaataaaattaccatttgtatcaaaag	Protospacer
. *  * **************** * ********

5. spacer 3.3|745451|33|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to JQ660954 (Clostridium phage PhiS63, complete genome) position: , mismatch: 7, identity: 0.788

tttcaatcaataaattttccagcttttcgaaat	CRISPR spacer
tttctatcaataaattttacagcttccttaaag	Protospacer
**** ************* ******... ***

6. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to MT074137 (Bacteroides phage DAC16, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taactgtatacaagataaaatattattttccttt	Protospacer
*   * *************** ********. **

7. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to MT074142 (Bacteroides phage DAC23, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taactgtatacaagataaaatattattttccttt	Protospacer
*   * *************** ********. **

8. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to MT074141 (Bacteroides phage DAC22, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taattgtatacaagataaaatattattttccttt	Protospacer
*   * *************** ********. **

9. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to MT074146 (Bacteroides phage SJC03, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taattttatacaagataaaatattattttccttt	Protospacer
*   *.*************** ********. **

10. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to MT074139 (Bacteroides phage DAC19, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taactgtatacaagataaaatattattttccttt	Protospacer
*   * *************** ********. **

11. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to MT074140 (Bacteroides phage DAC20, complete genome) position: , mismatch: 7, identity: 0.794

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
taactgtatacaagataaaatattattttccttt	Protospacer
*   * *************** ********. **

12. spacer 3.1|745318|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to KP211958 (Cyanophage P-TIM40, complete genome) position: , mismatch: 8, identity: 0.765

---tcaagtccaataaaattaccattagaatcaaaag	CRISPR spacer
ccattaag---gataaagttaccagtagaatcaaaat	Protospacer
   *.***   .*****.****** ***********

13. spacer 3.8|745784|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to MT774389 (CrAssphage cr116_1, complete genome) position: , mismatch: 9, identity: 0.735

tttagtttggatatatgatttaatagctcctatt	CRISPR spacer
tttagtttttatatatgatttaattccattattt	Protospacer
********  **************  * ..  **

14. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to MT774393 (CrAssphage cr127_1, complete genome) position: , mismatch: 9, identity: 0.735

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
aaaatctataaaagataagattttatttgataga	Protospacer
   ******* *******.*********  **

15. spacer 3.1|745318|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to NC_020292 (Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence) position: , mismatch: 10, identity: 0.706

tcaagtccaataaaattaccattagaatcaaaag	CRISPR spacer
atttctccaactaaattaccattagaatcatact	Protospacer
 .   *****. ****************** *

16. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 11, identity: 0.676

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
gtcatcaattcaagataaaattttaggaaggaga	Protospacer
 ***** ** ***************      *

17. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 11, identity: 0.676

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
gtcatcaattcaagataaaattttaggaaggaga	Protospacer
 ***** ** ***************      *

18. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 11, identity: 0.676

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
gtcatcaattcaagataaaattttaggaaggaga	Protospacer
 ***** ** ***************      *

19. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 11, identity: 0.676

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
gtcatcaattcaagataaaattttaggaaggaga	Protospacer
 ***** ** ***************      *

20. spacer 3.9|745850|34|NC_015913|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 11, identity: 0.676

ttcatctatacaagataaaattttattttctatt	CRISPR spacer
gtcatcaattcaagataaaattttaggaaggaga	Protospacer
 ***** ** ***************      *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

109831 : 154328

Clostridium_phage(50.0%)

tail,capsid,terminase,portal,plate,integrase

attL 111154:111198|attR 157133:157177

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007439944.1\|109831_111217_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	E4ZFI6	Streptococcus_phage	1.7e-80	35.3
111154:111198	attL	NA	NA	NA	NA
WP_005807580.1\|111269_112460_-\|integrase	site-specific integrase	A0A0A8WIE1	Clostridium_phage	2.1e-100	49.9
WP_005807578.1\|112694_113999_+	AAA family ATPase	V9QJ85	Oenococcus_phage	9.4e-49	32.2
WP_005807576.1\|113999_114587_+	hypothetical protein	V9QKG0	Oenococcus_phage	6.8e-07	32.7
WP_041568914.1\|115046_115298_-	peptidase S24	A0A142LP05	Marinitoga_camini_virus	8.2e-10	42.9
WP_014017795.1\|115640_116375_+	DUF3644 domain-containing protein	A0A220NQR4	Corynebacterium_phage	1.1e-17	35.8
WP_014017796.1\|117112_117826_-	helix-turn-helix domain-containing protein	A0A1Q1PVX8	Staphylococcus_phage	7.7e-21	31.1
WP_014017797.1\|117965_118169_+	DUF739 family protein	NA	NA	NA	NA
WP_041568926.1\|118287_118503_-	helix-turn-helix transcriptional regulator	G3MBD2	Bacillus_virus	2.0e-09	52.3
WP_014017799.1\|118614_118806_+	helix-turn-helix transcriptional regulator	J9QEC3	Clostridium_phage	4.9e-07	50.0
WP_014017800.1\|118930_119551_+	phage antirepressor	B2ZYU5	Staphylococcus_phage	1.5e-25	35.0
WP_014017801.1\|119553_119772_-	helix-turn-helix transcriptional regulator	A0A139ZPK3	Marinitoga_camini_virus	3.0e-08	46.7
WP_014017802.1\|119889_120090_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005807558.1\|120144_120363_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005807556.1\|120367_120547_+	hypothetical protein	NA	NA	NA	NA
WP_005807554.1\|120632_120899_+	hypothetical protein	NA	NA	NA	NA
WP_005807552.1\|120915_121215_+	hypothetical protein	NA	NA	NA	NA
WP_005807550.1\|121214_122351_+	DUF2800 domain-containing protein	A0A0A7S066	Clostridium_phage	1.2e-97	48.2
WP_014017803.1\|122366_122927_+	DUF2815 family protein	A0A0A7RVM4	Clostridium_phage	3.1e-57	58.6
WP_014017804.1\|122926_124846_+	DNA polymerase	S5M5X4	Brevibacillus_phage	1.0e-192	55.1
WP_014017805.1\|127658_127967_+	VRR-NUC domain-containing protein	A0A1W6JQA8	Corynebacterium_phage	9.7e-13	40.4
WP_014017806.1\|127918_129259_+	DEAD/DEAH box helicase family protein	A0A1S7FYY5	Listeria_phage	1.1e-134	53.6
WP_014017807.1\|129271_129697_+	hypothetical protein	NA	NA	NA	NA
WP_005807536.1\|129683_129896_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_007440106.1\|129973_130690_+	SHOCT domain-containing protein	X5JB37	Clostridium_phage	5.2e-33	37.5
WP_005807533.1\|130853_131276_+\|terminase	terminase small subunit	A7J290	Streptococcus_phage	5.8e-24	45.6
WP_005807531.1\|131272_131704_+	hypothetical protein	NA	NA	NA	NA
WP_005807529.1\|131718_132966_+\|terminase	PBSX family phage terminase large subunit	A0A0M4R5F3	Bacillus_phage	3.4e-141	57.7
WP_007440341.1\|133006_133486_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_007440342.1\|133526_133781_-	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_007440343.1\|133876_135265_+\|portal	phage portal protein	A0A0A7S074	Clostridium_phage	1.6e-107	42.7
WP_005807521.1\|135257_136841_+\|capsid	minor capsid protein	A0A0A8WIE7	Clostridium_phage	6.6e-105	51.9
WP_005807519.1\|136844_137051_+	hypothetical protein	NA	NA	NA	NA
WP_007440347.1\|137083_137425_+	hypothetical protein	NA	NA	NA	NA
WP_005807517.1\|137510_138188_+	DUF4065 domain-containing protein	I6R0L8	Salmonella_phage	9.3e-08	29.4
WP_005807516.1\|138384_138984_+	phage scaffolding protein	A0A1Z1LZK8	Bacillus_phage	3.0e-10	31.0
WP_014017808.1\|138992_140051_+	hypothetical protein	A0A0A7RTH8	Clostridium_phage	2.3e-93	51.5
WP_005807512.1\|140057_140438_+	hypothetical protein	X5JAJ0	Clostridium_phage	6.3e-14	39.5
WP_005807509.1\|140413_140788_+	hypothetical protein	X5JAV9	Clostridium_phage	2.3e-16	44.7
WP_005807507.1\|140787_141195_+	HK97 gp10 family phage protein	A0A0A7RVN8	Clostridium_phage	4.7e-15	33.1
WP_005807505.1\|141191_141620_+	hypothetical protein	A0A0A8WJT3	Clostridium_phage	1.3e-20	36.8
WP_005807504.1\|141624_141813_+	hypothetical protein	A0A0A7RTG1	Clostridium_phage	2.0e-05	61.5
WP_005807500.1\|141814_143116_+\|tail	phage tail sheath subtilisin-like domain-containing protein	X5JAJ1	Clostridium_phage	5.5e-150	59.0
WP_005807498.1\|143127_143604_+\|tail	phage tail tube protein	A0A0A8WJ62	Clostridium_phage	3.4e-57	69.1
WP_005807496.1\|143605_144037_+	hypothetical protein	X5JAB6	Clostridium_phage	2.2e-18	35.4
WP_100181642.1\|144036_144225_+	hypothetical protein	NA	NA	NA	NA
WP_014017810.1\|144231_146892_+	tape measure protein	H7BVH2	unidentified_phage	9.8e-178	47.8
WP_005807488.1\|146891_147593_+	hypothetical protein	X5J9Z8	Clostridium_phage	1.0e-33	47.9
WP_005807486.1\|147595_148555_+	hypothetical protein	H7BVH4	unidentified_phage	4.2e-115	61.0
WP_005807484.1\|148547_148868_+	DUF2577 domain-containing protein	A0A0A7RTJ2	Clostridium_phage	1.2e-13	39.4
WP_005807482.1\|148864_149272_+	DUF2634 domain-containing protein	A0A0A8WJV8	Clostridium_phage	8.8e-30	48.6
WP_005807480.1\|149271_150342_+\|plate	baseplate J/gp47 family protein	X5JAB8	Clostridium_phage	9.0e-90	48.1
WP_005807479.1\|150328_151018_+	DUF2313 domain-containing protein	H7BVG1	unidentified_phage	8.5e-25	39.2
WP_005807478.1\|151004_151769_+	hypothetical protein	NA	NA	NA	NA
WP_007441037.1\|151773_152619_+	hypothetical protein	NA	NA	NA	NA
WP_014017811.1\|152618_154328_+\|tail	phage tail protein	A0A0C5AEQ0	Bacteriophage	4.0e-15	36.6
157133:157177	attR	NA	NA	NA	NA

DBSCAN-SWA_2

413865 : 421106

Clostridium_phage(50.0%)

capsid,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005806970.1\|413865_414288_+\|terminase	terminase small subunit	A7J290	Streptococcus_phage	1.3e-23	45.6
WP_005806968.1\|414284_414716_+	hypothetical protein	NA	NA	NA	NA
WP_005806966.1\|414731_414992_+	DUF4160 domain-containing protein	NA	NA	NA	NA
WP_005806964.1\|415005_415308_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_007440545.1\|415304_416546_+\|terminase	PBSX family phage terminase large subunit	A0A0M4R5F3	Bacillus_phage	2.6e-141	57.5
WP_014017855.1\|416604_417816_+\|portal	phage portal protein	A0A0A7S074	Clostridium_phage	7.5e-93	43.4
WP_014017856.1\|417893_418778_+\|capsid	minor capsid protein	A0A0A8WIE7	Clostridium_phage	5.2e-27	49.6
WP_005807519.1\|418781_418988_+	hypothetical protein	NA	NA	NA	NA
WP_007440347.1\|419020_419362_+	hypothetical protein	NA	NA	NA	NA
WP_005806950.1\|419511_420111_+	phage scaffolding protein	S5M9M5	Brevibacillus_phage	2.5e-12	31.6
WP_005806949.1\|420119_421106_+	ATP-binding protein	A0A0A7RTH8	Clostridium_phage	5.8e-35	44.9

DBSCAN-SWA_3

1256299 : 1270698

Erysipelothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014018025.1\|1256299_1257193_-	FAD-dependent oxidoreductase	A0A2I2L5E1	Orpheovirus	1.5e-29	32.9
WP_014018027.1\|1258716_1259151_-	DUF4406 domain-containing protein	A0A2K5B270	Erysipelothrix_phage	1.3e-68	85.4
WP_014018028.1\|1259152_1259932_-	phage antirepressor KilAC domain-containing protein	A0A1Q1PVU2	Staphylococcus_phage	1.6e-67	50.4
WP_014018029.1\|1259995_1260538_-	sigma-70 family RNA polymerase sigma factor	A0A2K5B267	Erysipelothrix_phage	1.3e-60	64.2
WP_014018030.1\|1260841_1260985_-	hypothetical protein	A0A0A8WJA8	Clostridium_phage	1.4e-06	72.7
WP_014018031.1\|1261343_1262177_+	hypothetical protein	A0A2K5B265	Erysipelothrix_phage	3.8e-112	72.2
WP_014018032.1\|1262197_1265008_+	AAA family ATPase	A0A2K5B264	Erysipelothrix_phage	0.0e+00	88.8
WP_014018033.1\|1264991_1265204_+	helix-turn-helix domain-containing protein	A0A2K5B263	Erysipelothrix_phage	4.4e-25	75.7
WP_014018034.1\|1265336_1266380_+	NgoFVII family restriction endonuclease	NA	NA	NA	NA
WP_014018035.1\|1266401_1267640_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	1.5e-27	30.4
WP_014018036.1\|1267617_1268745_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	1.8e-56	38.9
WP_014018037.1\|1268737_1268959_-	helix-turn-helix transcriptional regulator	A0A1P8BML9	Lactococcus_phage	3.7e-14	55.9
WP_014018038.1\|1269357_1270698_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	5.5e-52	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_015913

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection