CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_015738	Eggerthella sp. YY7918, complete genome	8 crisprs	WYL,csa3,PD-DExK,cas2,cas7,cas8c,cas5,cas3,cas3HD,csn2,cas1,cas9,DinG	2	38	1	0

1. NC_015738

CRISPR-Cas detection and classification

Crispr_ID: NC_015738_1

• CRISPR_ID: NC_015738_1
• CRISPR_location: 312566-312639
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015738_1

Consensus_repeat	Method
GAAGAAGCGCCGCTTCCTGTGGA	CRISPRCasFinder

spacers of NC_015738_1

>1.1|312589|28|NC_015738|CRISPRCasFinder
AGCTGTGCCCGAGGTTGGGGAAGCACCG

CRISPR arrays and Neighbor proteins around NC_015738_1

CRISPR arrays

The CRISPR arrays of NC_015738_1

>merge|NC_015738|1|312566-312639|CRISPRCasFinder
GAAGAAGCGCCGCTTCCTGTGGAAGCTGTGCCCGAGGTTGGGGAAGCACCGGAAGAAGCGCCGCTTCCTGTCGA

>NC_015738|1|1|312566-312639|CRISPRCasFinder
GAAGAAGCGCCGCTTCCTGTGGA	AGCTGTGCCCGAGGTTGGGGAAGCACCG
GAAGAAGCGCCGCTTCCTGTCGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015738.1|WP_013978799.1|343185_344448_+|MFS-transporter	unknown	unknown	gnl|CDD|340913
NC_015738.1|WP_013978795.1|337936_339184_+|CoA-transferase	unknown	unknown	gnl|CDD|179589
NC_015738.1|WP_013978798.1|341762_343004_+|CoA-transferase	unknown	unknown	gnl|CDD|179589
NC_015738.1|WP_013978780.1|298556_299864_+|dihydropteroate-synthase	unknown	unknown	gnl|CDD|238380
NC_015738.1|WP_013978796.1|339344_340616_+|MFS-transporter	unknown	unknown	gnl|CDD|340913
NC_015738.1|WP_013978792.1|315220_325693_+|DUF11-domain-containing-protein	unknown	unknown	gnl|CDD|307488
NC_015738.1|WP_041690613.1|326154_336714_+|DUF11-domain-containing-protein	unknown	unknown	gnl|CDD|307488
NC_015738.1|WP_151197512.1|300933_302586_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|273816
NC_015738.1|WP_013978788.1|310072_311185_-|ketoacyl-ACP-synthase-III	unknown	unknown	gnl|CDD|236475
NC_015738.1|WP_013978794.1|336836_337682_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl|CDD|224982
NC_015738.1|WP_173363545.1|304518_305919_+|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240548
NC_015738.1|WP_151197402.1|299924_300737_+|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl|CDD|223417
NC_015738.1|WP_013978797.1|340805_341573_-|Hsp70-family-protein	unknown	unknown	gnl|CDD|274091
NC_015738.1|WP_013978791.1|314054_315053_+|hypothetical-protein	unknown	unknown	gnl|CDD|236766
NC_015738.1|WP_041690611.1|306649_308344_-|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|273816
NC_015738.1|WP_013978785.1|305957_306572_+|biotin-transporter-BioY	unknown	unknown	gnl|CDD|376871
NC_015738.1|WP_013978779.1|296256_298557_+|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl|CDD|273520
NC_015738.1|WP_013978790.1|312996_313926_+|VanW-family-protein	unknown	unknown	gnl|CDD|377286
NC_015738.1|WP_013978787.1|308540_310055_+|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|225107
NC_015738.1|WP_013978783.1|302667_304149_-|LuxR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197715

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015738.1|WP_013978799.1|343185_344448_+|MFS-transporter	gnl|CDD|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.47098e-37
NC_015738.1|WP_013978795.1|337936_339184_+|CoA-transferase	gnl|CDD|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	9.15146e-116
NC_015738.1|WP_013978798.1|341762_343004_+|CoA-transferase	gnl|CDD|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	6.59027e-119
NC_015738.1|WP_013978780.1|298556_299864_+|dihydropteroate-synthase	gnl|CDD|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	7.60189e-118
NC_015738.1|WP_013978796.1|339344_340616_+|MFS-transporter	gnl|CDD|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.18299e-33
NC_015738.1|WP_013978792.1|315220_325693_+|DUF11-domain-containing-protein	gnl|CDD|307488	pfam01345, DUF11, Domain of unknown function DUF11. A domain of unknown function found in multiple copies in several archaebacterial proteins. Conserved N-terminal lysine and C-terminal asparagine with central asp/glu suggests that many of these domain may contain an isopeptide bond.	1.90316e-12
NC_015738.1|WP_041690613.1|326154_336714_+|DUF11-domain-containing-protein	gnl|CDD|307488	pfam01345, DUF11, Domain of unknown function DUF11. A domain of unknown function found in multiple copies in several archaebacterial proteins. Conserved N-terminal lysine and C-terminal asparagine with central asp/glu suggests that many of these domain may contain an isopeptide bond.	7.92981e-12
NC_015738.1|WP_151197512.1|300933_302586_+|FAD-dependent-oxidoreductase	gnl|CDD|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	1.10804e-36
NC_015738.1|WP_013978788.1|310072_311185_-|ketoacyl-ACP-synthase-III	gnl|CDD|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	1.88636e-129
NC_015738.1|WP_013978794.1|336836_337682_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl|CDD|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	4.22669e-79
NC_015738.1|WP_173363545.1|304518_305919_+|MATE-family-efflux-transporter	gnl|CDD|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	3.6513e-110
NC_015738.1|WP_151197402.1|299924_300737_+|biotin--[acetyl-CoA-carboxylase]-ligase	gnl|CDD|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	1.30871e-52
NC_015738.1|WP_013978797.1|340805_341573_-|Hsp70-family-protein	gnl|CDD|274091	TIGR02350, Chaperone_protein_DnaK, chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. [Protein fate, Protein folding and stabilization].	7.85798e-25
NC_015738.1|WP_013978791.1|314054_315053_+|hypothetical-protein	gnl|CDD|236766	PRK10811, rne, ribonuclease E; Reviewed.	2.1916e-12
NC_015738.1|WP_041690611.1|306649_308344_-|FAD-dependent-oxidoreductase	gnl|CDD|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	3.20477e-44
NC_015738.1|WP_013978785.1|305957_306572_+|biotin-transporter-BioY	gnl|CDD|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	2.51227e-29
NC_015738.1|WP_013978779.1|296256_298557_+|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl|CDD|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NC_015738.1|WP_013978790.1|312996_313926_+|VanW-family-protein	gnl|CDD|377286	pfam04294, VanW, VanW like protein. Family members include vancomycin resistance protein W (VanW). Genes encoding members of this family have been found in vancomycin resistance gene clusters vanB and vanG. The function of VanW is unknown.	6.06797e-52
NC_015738.1|WP_013978787.1|308540_310055_+|response-regulator-transcription-factor	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.01387e-12
NC_015738.1|WP_013978783.1|302667_304149_-|LuxR-family-transcriptional-regulator	gnl|CDD|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.81043e-11

Protein sequences

>NC_015738.1|WP_013978788.1|310072_311185_-|ketoacyl-ACP-synthase-III
MGSTIIGCGKSLPALEVENDELKALVDTNDEWITTRTGIKSRRIAVDETNADLGEEAARQALGWTEGGYAERRIEAGEIDLVICATVTPDVVVPSAAGLLRRRLGLDNAIAFDVNAACSGFIYGLTVAETMIAASASNVAGAAGRNPIKRALVVGAERLTRLTNWSDRNTCVLFGDGAGAAVLEWNEERAGILSSFIVNEDDITNALTCANAFDAPQPFDKDGISLEAAAAGDPALPRTDEEIGTHALVEAGRPRQVLYMDGPKVFKFAAEAMTTAVRQAVERAGITLDDVACIVPHQANERIIKYAAKKLGRPMDFFQLSIAHTGNSSAASVPMALADAYEQGRIQRGDKVIVVAFGGGFTSGAVVFEA
>NC_015738.1|WP_013978787.1|308540_310055_+|response-regulator-transcription-factor
MPMMRAELTNRPFLSVLKDVAKILRDDPLLFLGFGMFWIWVWYVFQSPAIGALNEDSFPFGILPWVLPLSSYAAGFFVLGAIFYFKRIIPKSRVYKTSIPCLMTVGLVLCSLFPGLSLAAFSLESVMYACGSIMMGLSSAFLHVEWGRLSGTLGPRRTIVHGACGTVFASMVIVVIANLPLLVCAAILIAFSWIGSMVVFGATEKRKGIYTQGSHAELRISAKFIMTAFTQGCSLGVLQIIMFKSHTQVDSIMISAVGFSLGAILIAATALVYKMDFNRLLYHVGFPLMALGCLLVALLAPYVVAGGFVHAVGYRFVDILIWALMAYVMKYKDMPANWVSSITTSWLILGQFVGTFGGWMAVTLFGLPQGMVVPSMVIVFVLMLCALIATSTHNLRTGWGMISPGENETELSRFDKHCLMIAKEYLLTTREAEVFSYIAQGFPRKYICEKLVVADGTVKAHTRSVYQKLGIHSRQDAMKLVEAHMADFALEEDEEQPDKPLPVI
>NC_015738.1|WP_041690611.1|306649_308344_-|FAD-dependent-oxidoreductase
MGNVSRRTFLTTAGIAGLGIAGMGIAGCSPSSSTDSTSKGNAPAEESGKTWSWQTPPEEIPESEIAETVETEVLIVGAGMSGLCTGLRARECGADVIILEKMEKVLGRGGSIFAMNSRFLKEKGYSIDIGQTYKKMMGYHSYRIDEAKWMLHANKSGEAMDWLEDKMIHASSVGGNDLFPIMEQWYIDPENVNGEYPGTHEFLGGPNGKSPRDNPQQDVVDNLAAYCADAGVDIRYETEAIYLVKDDSGRVVGVVAKTGKDYTKFIGKNGVVLSTGDFGTNEEMISCYCPWAADAGPGGVFDGYGHQMAMWAGAAWQKNGSSAPMIFCFQWINITNQVRAFQGLLVNELGKRYTNEDNVLSHGSLAMMQQPNHRSFAIWDTAYATDADWGVQYVDGPPVFATPEDCLAHWDSLVTSGTIDQNGSGSMSLNMFKCDTLEELIDSLGLPKEETLQEIERYNSFCETGVDEDWHKRSNLLFPIKQGPFYGAMCTPWQLTMTGGIRCNVDMQVLNEQDEVIPGLYCTGIMVGDMYTNCYSTHFPGHNLGCTCLTFGYLTGERLAKGPE
>NC_015738.1|WP_013978785.1|305957_306572_+|biotin-transporter-BioY
MEKAKTVKTAGISRTRSIAFVGLTIALMAVSAWVSIPLGPVPFTLQTFVVVFAFLVLTPRECVAALAGYLALGAIGVPVFSSMRGGIGVLAGPTGGFLWGFLLGAAAAIVLRFAFAKLADRGTAHTANAARAVRVRHMAIDLAAGFLFLAVSYICGWAQLMAVAAMSPLAAFATGIAPFILIDAAKLVAAVICAQAVNRALPKR
>NC_015738.1|WP_173363545.1|304518_305919_+|MATE-family-efflux-transporter
MGTASIPRLIVEFAVPSILGMLVNGAYNVIDSIFLGQAMGEIGLATATVAMPIMTVFMAISMLVGNGGNALAALRMGEGNRDEADRSLGNTVTLSIILAVIVAVVAHIPACIDGLLGVSGATPEDWDYARSFIQIISLGFIFQCIGMGVNNFIRTAGAPNRALGTMIVGAVACTIFNFLFVMVLGWGVQGSALATVFGQAISCGCVLWYFIVTKNVPLKLHWHSMPLHARTVGLILSLGLASFAVQAGMAVVNFVLNNLLNMYGTASPIGAEGALASIGVVQRVAMFSVLPLIGVSIAIQPLLGFNYGAHLFMRVKKTLLYGIVGATGIAVLLWGLVHLFPTQIVGFFGIVDDELRDFTVFALKVQLFMLPFVGFQIVGSNYFQATGQPAKSIFLSLTRQILFLIPLYIGLPMVLPGWFPGYTGLDALYFAVPVADFLAIFTTVVFILIELRRLKKLERGEIVAKF
>NC_015738.1|WP_013978783.1|302667_304149_-|LuxR-family-transcriptional-regulator
MESTSNTTVNRPECSSTALKYAIPIVGATFLWLPELFILNSTRADIASFFFTNAAYPWFLLFGTVAVGCLLFSRVADIKGTTWLLVLSAFVYAFGIALHYLALLAPSLASFFWIGAALAGMGFGVLMMKWGSFFIDIPLRAIKIIMLCVAALTALASLVPAALPLSPSVLLAASLLPLASAWLLQQSERFVPTFGREMSRLPRKSVRIKSTFIIGIASVSIGFGIMKTLSLTGSFSFPLGGDVLLSLITVSLLAFILLNRKESGYSVSWKIIVTIMILGFLLLMMRGQESIGQAYAVSSIGYDLFEYVLWIASVDAAKYSKQPPLRFVAYTFVFTIGGQFFGSIVAGTLLEIVDLSQAAFLLGALSIVAMVAAIIWFFPADVVRSIFTDQAGELKQQNGSDAMPSKTHLLDNAAKQEDLKRQLRLSYNLTERETEVAALLSNGRSAKFIQQELVISESTAWTHIRHIYRKMEVATRQEYLTKIEELGQSEYAE
>NC_015738.1|WP_151197512.1|300933_302586_+|FAD-dependent-oxidoreductase
MNRRDFLKGAAVTGGAAALMGLAGCSPQGSKASKETSDTATASNAHPWETTPEPIADIAETKDYDIVIVGAGIAGLSAAEAAARSGAKTVVLDRAGQCSGRGQDFGGIGARVQIENGVNVDPEEAARLLHQSSMQMANYNLIYTWASRSGKVFDHIEEIAKDQGYQIIPADGSSGTAKFGWNVLEERFRVLQTGMNVLTAEGENLYPTPMCTILETAASSAGAEFVYNTHAEQLVGNASEGITGVIVTAEDGKHVQYNAAKGVILATGDIGGSEEMLKAWCPIALRADANGYMPEGCNTGDGLLMGLWAGAALSRSTPAHMVHQFAFDNYDFPLTSFYMAWLNVDRRGIRYGADLPFEPYLTNARMCTPGNVAWSIFDSDYDIYVKRQQPDTYDSVLSWAPEAIEEFQGTEFLYKADTIEELAGLISVPADALQNTIDHYNELFESGEDPDFGVPAQFLSQVKTPPFYATPNLCSTLVVPYGLHVNDDSQVCTEEDEPIAGLFAIGNVQGDFFSFEYPVHCPGVSHGRCITFGQLVGEALAHDTVITQTV
>NC_015738.1|WP_151197402.1|299924_300737_+|biotin--[acetyl-CoA-carboxylase]-ligase
MRTERWGSMSDLGLFHVRALEETSSTNDEVKRALEEGEPEGMVVRARRQTGGYGRQGRIWASPEGGLYCSFLLRPTVAPDALPTLSLVVGLAVRRAVVELVGEHDAEAVQIKWPNDVVVVRSRQEHASVAKLCGISVEVHAGGVCVGVGVNVLPPAERPLVGGKNEPAYLAELAPKLNRMASDDALDGVLDGLLKAFAVLYDIWQQQGFAALLDEYNAHASLTGRDVTIVDREGVPLASGTVLRVDFLGRLVLRTPQGETPITSGEAHIA
>NC_015738.1|WP_013978780.1|298556_299864_+|dihydropteroate-synthase
MIWRCSTHEFDTRMPIVMGILNVTPDSFSDGGEHDTPDAALAHAERMLEEGARIIDVGGESTRPGATPVSVEDECARVLPVVCALAERDVCVSIDTRHAEVARACLEAGASIVNDVSGFRDPAMVEVVRESDCGVVVMHMQGEPSTMQDAPTYGDVVADVRDWLAAQAASLEAAGIAHERICIDPGPGFGKTPRQTLELVRNFQEFARLGYPVMAALSRKSYLGFAYGIENPADRDRVSAAEALMACELGASIVRTHNVAATVKALEELRPYVFLGMGCNVPLVAEPGEEREGKIAMLNQAITELCSLPDSQIVDISSFYESEPAYYEDQDTFINAVVLLRSGIAPKELLGYLHAIENSLGRVREIENGPRTCDLDILDYQLYVVDTDVLTLPHPRIMERDFVVKPLLELRPHHVLANDVPVTTEAVKVGKAVRL
>NC_015738.1|WP_013978779.1|296256_298557_+|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MAQQNKQPNKQTQLQQPNPRTTIISIILFALVAFFVGQQFMNMSSAGAKPTDKLITSEFVQAVEQDRVTKVVYSAGDYTVSGSYFPAVTAGSTAAEGFNDAFQALNARMATLKNPDTGKALGGVGTTDIAVSELGVERNFTSTYYGGSLDTLLAAHPDTSYEVTLPSPFMDILAMLLPIGLITLVLLFFFSKMQQANNSQMSFGKAKTKKSVEERPDVKFSDVAGVDEAVEEMQEIKDFLANPAKYQSMGAKIPRGCLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFQQAKDASPAIIFIDEIDAVGRQRGTGLGGGHDEREQTLNQLLVEMDGFESNDSVVLIAATNRADVLDPALLRPGRFDRQIVVDAPDVKGREKILQVHSKDKPIGSDVDLSKVAKLTPGFTGADLANLMNESALLTARRGKKIITQQEVSESMERVIAGPERKGRVLDEKTKHTIAYHESGHALVGHLLPHADPVHKISIISRGRALGYTLSIPKEDKVLNSLGEMRDELAVFMGGRVAEEIFCDDITTGASNDLERATKMARAIVTQYGMSAELGTQVFGQPNHEVFLGRDYGNTQDYSEETAKRIDDEVARIMKDAHDRAHEILASHREQMDLMASVLLERETVEGEACLALLDNTWDEYLKHEDEIIARKEAEEAAARARDEHLADPNWKEEPVEPGDQDPNPPYREAAQGEAGADAEAPATPSDATVEPIQPVVPEGGLIDPAPNATEPKQEGDEKK
>NC_015738.1|WP_013978790.1|312996_313926_+|VanW-family-protein
MKHRATARHRGQPANPVGWGAVAAGACSVLVAAVMAFGNPALWATAQQVSAQRYAPGIDVDDYDFIDQAAGDYIETSQLACLGSYKAISQVDDEARATNIALAASALDGFEIKPGETLSVNEVLGDTMLDDRYLEAPVVYGVSMQRERGGGVCQVSTALYIASLESGMDVVERHPHTIVVDYAPLGLDATLSYGQKDLCIKNPTDASVFVHAEALGQTVEVKLFGADVRNDVELDATSRVVERLEEPAKDVYDDPAAEGFDPEDVVTRYRTEAQLVTYREGIKESSELLSEDIYLVVIPSAEEAAHQAA
>NC_015738.1|WP_013978791.1|314054_315053_+|hypothetical-protein
MSTETNESILTKGVVAIDDRKLIGKVKDVIIDCDACGVSHYIVSSSSTNSALVLPFEKSLAVGDTFMTIQSRADFLPTTDLTARGALDDNFDLVGLDVYSRAGSHLGVIKGFDIDTTFGGVTKIDLEDGTAFERDTFVFFAPEFVFVDDGAVMDADLRAAVQPLSADQEDDAAPLTEPASVEDAAPEIAEVEAVQVENVEAEVIEEVDEEPEAEEPADEPVEAEEAETDETEVKAEAEVEAQDEESEVEAEAEPETVPEAPEPADEEAPAEEAKADPDAELKDFLRGKKLIERVESQDGAFVAERGDELTDEILAEAQKHDALLLLTMSVDE
>NC_015738.1|WP_013978792.1|315220_325693_+|DUF11-domain-containing-protein
MSNGTSKRDRDAIRGRSSVLRRFLCVALSGLIAVPFGSTALLSSQAAAEPVDDAASSETAPGELSASATIEVADTAAANALEAAEAAHMPTLEEYLGGGLASSASRASTLSIEDSDQQSNTLSTLEVASLYANVQDLEPGTPEYYNARWQDCLDKFSYKETGLPEWDGSDAGTKPTEGSGTTGDPYKIYTAEQFRWALKNQTSCILMNNLDLGGRNNRNWTGISYTRAAVVDGNGFTVYNLYSSAAQRAGLFEWAGADGYGFVLKNLTVSNSRVYVSQRFAAPLIAGFDGGVVDNCAVIDSIAWQDKESGIEPPLVSGAVTFGWGYAGINYSGDARWHGYKSTITNTYTCNVSIRGKACSSGFTEVPYNALIENCASMDGTIVVSGGHSGGFASCDYGPITYRNCFTNNNVYGNATTGVFQGALHNDEHSFENCWASGKIEGTSIIGGFMPFVDGASKITLKNCYSTSMVGMSSGGTNMGGFVGVAAANTTFTNCYAAGEVGTLKSNDNGVALDDSGNPVTSVGGFAGSNQGATFVNCYYDKQTTGSRENALGTTQDSAVPGVTGLLTKSLTTTSPDDSAYKLSKGTYPQIKVFSEGDAAQWGNNQLLADYAKAYSQASASTVFLYPSMNDDSKYDASTTDYDTVRRIRYAFPLTNDTMVGDAALDTVWKYYDDGDRFPNKSPVNPDAKIITLSTETNDDTMNDVSVTSVATGIGWLRTESVFNGVTGSRNLRLVPTTSVAIGKDGKAIVGSDDTVYYQDDANPPTGNIAYQKLSDDLTKADHREGITFIVASSKNLDDYMNDNGSYTTNADKLKAHNIVALDFKSLSGTTSEAVADSTTGKKTNLDYTVTLKNSSGHDEKQVVRLSVAKVIPADPENPDAPGIMSAPLEWDSADNWQQLFEGERTATQDELGKYVLSYQWMDTAKKTVQAQGTKYLTVVSPLSLVYRTGYGDNTTLYTDPGAYQNSDPAAADRMPTDPTRHGYQFSGWVYERENASGGHDAFAADTLITAVTDSRGNTNSVIGIQATWTPNKHDLIIKDKKGGTEQKRLSTDYDTNLRTALESHVPSRTGEGEFLGWRIESGFDGRTDQYVSASDTMPDNAVVVYPVFGTEVSASLTAHNETRGTIDGTQHNRVGDIITYEIAIVNNQPDLIWRNATITDPLIVGQDFVKGSAKLIKPEVGDPLPLDDACFDSATNAVVYTVPEDVQTDETYVLMFQVKLNENAPFVGQGTDKVITNSATVDGEDANGGDVNANTNEVKLPGSAYVEFTPADKWVSKNAQNLTDPDATKSQVGDRIRYTLEMGNKSDDPHSRWQNGWFYDAVPKGLQVDSSTITLTYPSEASPNGTSTSVFPTAYNDATGEISVAAGTLKAGEKATLTFEAIVTADAVGQSVKNTAWAVTDEPAKPNDPPVTPGKTEPAPAPDPDNPDPDPTDPVGPGTDTINLSVAKTAGVTQASPGSVVPYTITVTNSGNTHAKNVVVSDTLPTGLEYVSSVPAAQVSDGTVTWTCTVPAGMTVTRTVMARVTADATGPLVNDVVVTSPDVDGPITPPSKPTVDVVPSPDEPVVAVSKVATTDTAVTGGQLTYYITVTNSGAQEAKDVVVTDALPPGLVYASATDGGTYRNGLMSWTVDLPAQSSKQLSVTANVTAKTGELVNTATAVHDGVANVSNYVTTSVSDGTKPKNEPQLSLKKTSSVSQAAVGSEIPYTITVTNTGAGDAKNVTLTDTLPEGLEYVDGSASPAPESAADGVITWKVDVSAGQSVTRTLKAKVATTASTGAKLENAVEASNPSGGDPIVPSELPSIEVVDGSTGGNQPILGISKKADVDTVTSGSDLTYTITVTNTGTAEAKGVTVSDTLPAGLSYQSGGTYDAKTGAVSWTVDVPASGSTDCTLVAKVDAKAGALSNTATATFGDTQVKSEAVSTSVTSSGGAAKAQLSIKKTTSVTEASVGASIPYVITVTNTGDADARGVTITDTLPAGLTYESSEPAGAVSADGKSVTWSVDVPAGGEVKRQITAKVDAGVSTGSQLANNVSVSDPEGGSPIEPSVDPPTVDVIDPTNKANIAISKVASADTVVSGSQITYTIMVTNSGSADATDVKVSDALPTGMTLAAATDGGALEGGAVTWTVDVAAGASKQLKVTADVTAATGTLVNAAQATLGDKTVTSESVSTQVKASETGGTPEAVLSVQKTTNVDEVVQGATIDYAIVVSNTGDADAKGATVSDTLPSGLMYLSSDPAGQLSADRKTVTWTVDVAAGSSVTRTITVLVTGSQGQSIENSVVVTNPDKPDAPPIDPPDKPVIEVTDAADMSAALAVDRSVANKSDNLVYTVSITNSGTVDAKGVVVTNKLPKGISFTSASDGGTYVPEQAGTTPAAASFDLFASVASFFGLGDPTGEGETEKPEAGSVTWTVDVPAGATITRTVQADVLIESGLLVATGNLKHLETAVPINNVQTKVLPESTGTGEPNISVEKTTTATQVKPGYEIPYTIMVRNTGTADARGVSVVDALPAGLIYQSSSPAGQLSNGDKTVSWMADIPAGGVASFTVLAKVADDAAGSVMNDVMVTPDGGDPITPPNPPDTPVVGPDDPGDGRPHIGIAKSVDAISSAKGDTVTYTITVSNTGAAAATDVLVSDAVPEGLDSVVASDGGSYDAATRAATWTIPTLDAGATKTFTLQAEVTAAAGSLVNMAQATHEGITVQSEPVVTDVETNSDPGHVPAPSLVMSKTTSVQQAAQGATVPYIITVRNIGDAAADNVTVSDVLPEGLTYVDSLPQAASSEGGAITWNTSIPAGGSSTFALYAKITSDVGTTISNTAQAQLPDGTTVEPGSDPSITVSPSTPKASVHIAKHAGRDQAVANGKLVYKLSLTNTGNGDATGVVVSDALPMGTSFMEASDGGTYDQATGRVTWTVDVPALGRKEVTLTVKVDALAGSLKNMASSTHEGKTETTPIVITPVSDAPTEADPEPSIDKAVANLTAQKEGRSDPDDQSTWRDGDELEFTITAQNTKTDSLWTDVVITDALPAGLTLVEGSVQFAAPGQTASTNDGAYDSIARSLRVEAGDIAGGQSAQLTYRTVIQAGLDWSVDATLRNIAQGAGYDPDGVNPLVEEDAVAIPTPEPHSRKELTKTAENLTDPQASIVQVGDRVRYVITLKNAEPNPRAQWKGAYVYDEVPEGLDVDTTTLKLIDANGISHDISDCYDPATRQLVVSTGVIKGGTQAVVSFEAVVPIGAVGKDLSNVGMVGELLPDPNNPTTPPDPGKPDDSVLPNPVKPDGNTDPKPTDPASPNEDSLVKPSDPDSSIQKTVKSLAGNEDYVNGEEVLYTVVAENTRLGSLWSSVIITDVLPAGVNLDPRSIRLIGPDGVPSDVDPSSYNATTRILAVPLGDVEGGQRYVLNYTARLDFAAGQGDAVNHVVANGASPSGPAMNEANASVTPPLVPWNGTVARSGDALGANAVTLALAALASLVVLLVSARARMSSLRSARAAARTCRRP
>NC_015738.1|WP_041690613.1|326154_336714_+|DUF11-domain-containing-protein
MKVQHALVSRRAAQTCAVMVAVVMVAGTAFPAGLPSAAAVEPEEGAEAPTGSFTADASASATVEVAGDDEADEPTTYDASALESQHMPTLDEFLENGGGSLSATPFMLSSEGEQEANSAQVAALYESRATDLQPGTPAYYDARWNDAVAKVYATGVNNTPWVDTSTKGNGGSALIPWDGNMGGTQPSQGAGTDGDPYRVSTANELRWALVNQKSCKLTQDIDLGGMQDKRWKAVDVSTAFTIDGDGHTIWNMNAYQEYVTNPDGTHAGTLPCGFLGNVMPEAFLMKNLKMSNVLVRSECQSEQNMAAVIAKFQGGTVRDCEFNNILVSSIDKDTKQYVNFGSCAAIFDTSQWNEAGSGCINIYNTVTRNAHVRGGGCTGHFYEGGWNRGTEDVRITIEGCASMDGTVVSTGHSGGFISCTGLTTVKNCFANIDVYGDDMAGVFVGVVHYPVTIENCWASGKVEGTRNVGGFVGGLGRHDYNVDSTSTFTNCYSTSMVGMSSTGLCMGGFIGTTWDYNASTVPQKLLFKNCYAAGEVGTLQSKPDGTAVNASGSDVPTVGGFVGETTSNATFENCFYDKQATGSMEIEAGAAATDLANHATIAVKPNVSGLQGLLTKSLTGQNLGTGWTTSNGSAYPQVSSFVDGSWTTNDAFKAFGKAYSQASVSTTFLFPSMNGDNYNPDATDYDTVRRIRYAFPLTNNVAVNNSAIKTSWEYDKDNEAYYPNASPVNTDSKIITLSATDPNDASMDDVSVTSVSTGIGWLRVYSTVDGVTGTRNLRLVPTTAVVIGTDGHAIVGSDATVYSQIPQNEYPDGYKPLADSLTKSDHRDGITFVSATSVALDKYMTSTDLDKANHLKDYGIYTEAFKDLSSTSTIGSDGKGSYIQYAVTIGGSQQTVRLRVNKTIEDPTNLDGAGILSPVTLDEDMQKLLEGQRAPLKTELGKYALSYQWLGTDGSVQAEGTKYLTVVSPLSLQYLQGYADNAKYAEDPGAYMNDQSINERSADEPTATTKALPSKPTRFGYDFVKWVYQRDWDKQGASADEFSANTKITAVTDSKGKTDSVIALRAVWTPHMNNLVVKESKDGAVKETLSIAFDTRLLADALAGHEPTPPTGQDFLGWRVESGLDDESGLGDERVGTYLLSTDKMPDKKVVVYPAFGSSVSASITAKNETQGVLSGDANNRVGDVIAYSVAIQNNLSGSIWNAPLITDKLEDGQDFVEDSIKLFAPDGQPVSLENVSHGFHAETRTVSCAVPANLKPDDVYTLEFKVTLNQDAPYVGQGTNNVIKNAAEAVGTDANNLEVRAVTDEVALPGSTYVEFKPAEKHVSKNAQNLTDPDATKAQVGDRVKYTLELGNSSTDPDSRWVNAWFYDEVPAGLVVDTSTIALTDNAGQEYNVPSAYNEATRVVSVAAGSIGPSEGATLTFEVVISADAVGQSIKNTAWAVSNPSDPPNSEPEVPGKTDENPPAPNPDNPEPEPTDPVGPGTDTVNLFVTKSAGASTASPGSVVPYTIKITNTGNAHAKNVTVTDTLPAGLEYVSSVPAASVFDQTVQWTCTVPAGMTVTRTVMARVTADASGTLGNKAVVEAPGKDPIESSTTEVSIEPSPDTPMVSVSKVSTTDSAVTGGQLTYYLTVTNSGAQDANGVVVTDPLPAGLVYASATDGGVHRNGVMTWTLDLPKQSSKQIAVTANVTSKSGELVNAATAVHEGVATTSNVVTTSVSTGEKPKDQPQLSVKKTGSVSQAVPGAQIPYTITVSNTGKADAKDVVVTDTLPEGMEYVAGSAAPADAQVNGQSIAWTVDVPAGKEVSLSLTAKLADDAVAGNSLQNTVEVTNPVGGDPIAPPDLPSIEVLDPTGDAKPVLGITKKASAATLESGNDITYTITVVNTGTADASGVKISDALPAGLTFKSANESGAYSQATGAVSWGVDVPAGGSVERTVTATVSAKEGTLRNTAIAQLGDTSVESEAAAVSVTPGAGDGNDPKAVLSIKKTTSVTEASAGSLVPYTITVTNTGNAAAENVVVTDTLPTGLEYVSSNPEGAVQDGGKQIVWTVTVPAGGEVKRQLVARVAADVTAGNSLTNNISAVDPSNPDVPIDPSVNPPTVPVVDPDPDKPASLVVTKAASSDAAVTGSQLTYTITVLNSGGAAAKNVTVSDTLPVGTTFAAATEGGKLEGGAVVWTVDELAAGESKSFNATVDVTAASGELVNTAHAALGDAKVSSEPVTTPVTSGSSGDTAAPALSVTKTTNASSVAQGALVDYLITVSNTGDADATDVVVTDALPSGLKYVSSDPEGTVSADGKTVTWKVNVAAGSQVTRSLTVLVTGGKGQIENSVTVTDPNDPDNPVTPPDKPVVDVTDMADVSALLAVDRSQAIKGDALAYTLAITNSGTVDAKGVDVAEQLPNGTTFTSADNDGACDEKGVVTWTVDVPAGKTILLKVNAEVGIDNGTMIAGGTYSYLDSAKAINDVQTVVKTENDPGETGKANLSVEKSTAATQVKPGYEIPYTITVKNTGTAAAEGVAVVDTLPDSLEYVSSTPNGVHDQTNGTVTWEADVPAGGEVTYTLICRVAQDATGDVQNSVQVIPDPNNPDDPDNPPVTPPDVPVTPVKPDDPDNPDTGEPQIGLAKSSDAGASAKKGDTITYTLTASNTGTAEARDVQVTDALPEGLSVADSSALPAGVTYDAGSRTVSWTIDSIAAGSTASVSFGTSVSAGAGTLTNTAVAQWDSKEARSNSVSVAVEGSSDPSATKTPLLTASKVVGSTQAAQGSTVPFVVTIKNIGDGAAQGVKVTDLLPEGLDYVGADPAPTSFDPSTNDPMWTIDVQPGASAMFTVRAKATADTGVKLRNKVQAAIPDGQSVQAESGAIEVTSPAPAPTAQVSISKRGSADKASAGGLFTYKITVSNTGTVDAKDVVVTDALPEGTSFSSASDGGTYDEGIGRVTWTIDVPALSRTELTLVTKVEALAGSLKNQAVSLFDGKNSVTPLVITPVSDAPTEADPVASITKSVRNLTAESDERTASADDQTVWRDGDELLFTIEAKNAKDAQVESVWKDVSVVDKLPVGLDLVDGSMSFTSPDAGASAASWDEQARTISAKAGDIATGKSAVLEYKVTINAGDGPTEDPATVTNFAQAAGFDPDGVTSFSADAKVDVAVPEPASIKKIAKTAENLTDPGASVAQTGDRVRYTITLNNAQENPRAQWKGAYFYDEVPEGLNVDVTTIRLVDAAGASYELADCYDPATRLLVVSAGTINGGKQASLSFEADIAEDAVGKNIANVGMAGSLVVTPGDPDPAPGKPDDGLLPSPVRPDGVDPAPTDPVAPGNDIVEYADPDPSVNKTVKNLSGTEDYHSGDEVLYTIVVENKKANSMWYDVAVSDVLPAGVELDARSVRLMGPDGVTQDVPASCYNAAARTINVSVGDVAGGERYTLSYTADLDFAFAQGDAVNLVRVEGVVPGGGSVASGEGSASVTPPLAPWNGSVAKSGDRLGSSTATLVLMAGLALVVIAVSARRRQAGIKAARASHHPFNN
>NC_015738.1|WP_013978794.1|336836_337682_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MIVGITTTRVEEDMPDERVLVERTTVEYLWRVAASGAVPVLLPPVPGDRAANEEAARALLDRIDGLVLSGGGDIDPSWYGESERLPETTHVFEDRDALELELARRAHERNMPVLGICRGMQVMNVALGGTLYQDVNACKITRIAHQQKPPYETAKQRIDVVPGSVLDQTLFGDVSTCRQRMIEGAAEAAGDALPACAFREGATTKAEETQTRPLLVNTMHHQAVASLAPGLRVSATSDDGLIEAIEDPTRRFFLGVQWHPEYLNDNTPLFDALIRAIRATQ
>NC_015738.1|WP_013978795.1|337936_339184_+|CoA-transferase
MKSTERPKFGNLQNLKVLNAGAVIAAPFVCELFAEQGADVIELESTVAPDMYRMYGDAWSVDRRNQRMMTLNIPSPEGKEILLQMVKWADVLVESSKGGTWAKWGLTDEVLWESNPALVILHISGFGNWGDPSYVNRASFDPIGQAFSGYSNINGFPDSPPSVTKPFTGDFMTGLMGAWATLAAVIRARETGEGESIDCCQFEALVRLQGATLSDGINHGIQPPRLGNEDLVGACAGSQKCKDGYCQVAVGGAGPVKKLVEFFGFADDPDFQPLGSYPSITRKPGCKSLDEPLPDRAAKFRRAIDTWCAEHTVEEVNKTFGEMGVAVSPHMTYEMMLEDPHYQAREVFVDCYDEITDKTIKQVNMIPRFKNHPGQIVRGGAKYDADTRDILEEFGYSEQEIELLYERGVLKKGDQ
>NC_015738.1|WP_013978796.1|339344_340616_+|MFS-transporter
MGTQTKGSNYAWAVAIACVAFYAVPLGFAANHAGLFITPVMDQFGWSRTDATLFMSLQPWVAAICTPIAGKLISKYNPRWIMTAAVLAFGLANLACAWFTEPWQWHIYGIIYGASAAFWMYIATPTFVNRWFAKSNGTVIGTIGVMVSLLGAIMSPVIQGWITSMGWQTARIICSVIVIVLGAGVTALLLRESPEKMGVLPWGYSEAEAEASKSETKATIDVANDEGATAAQARRSPALWLLIVMAGFFVISASFVQQLASYASVTEGLGAAVGAMAVSVAMVTSMAGKFGLGWISDHFGARAAGITAGVLGAAGAFICFIGGANVMMFYVGVGLFGIGYSALNVVPPMTCRQAFGQKDYANVFSIVATGLNVFSGFSALIYAQIFDITGSFAGAFWMIIVFYVVIVFLSLVIVPMGRKIWAK
>NC_015738.1|WP_013978797.1|340805_341573_-|Hsp70-family-protein
MAHKTGSSRSSNQTVKEGSNAVSISIAAPDGVMPLSLGIEIPGGRSQHVIERGVRLPHQRRELYSTAQSYQTAAEFHLVLGERPLVQDNISLCRIRVRNVKWSGAGVPKIELVFDLDKQGRLSVSTDNKDRKRDEILVHNLKEQVSAEEVQTALDDAHQHAEKDDETRAAIQDMLDAYKLLDTAYEHYSLAKRKMSFFEQRGYKKIRGRVEAALRVMPPDITPASMRALHDAVEQLKVKDERLEQLSIEVAKWWR
>NC_015738.1|WP_013978798.1|341762_343004_+|CoA-transferase
MKSSECPKFGPLQGVKVVNLTMAIAGPFACSLLADLGAEVIGVESPRGRDTSRPTNQALQGWGTQMERRNTRSLCMNVKDGAGREWFFELLKQADILMDGFRGGQMAKWGMTDEALWEINPKLTIAHISGFGQTGDPAYIERASFDGIGQAFGCFMEMNGYPDRLPVLAFPQVSDYYAGFMASVGALAGYINAQRTGKGDSVDVAQYEAMLRCEGFYAVNYLNTGALPVREGSHSTSSAGYGTYICKDGVPIYTLILGPGVVRAALPLFGLEYGSELFPEGTPVISFGSEAGNVLEEAMERFFSEHTAEEAEQLMLKAGVPCSRIYTYEMAEQDPHYLARESFTEWKNSYDDGTIRGVNIVPRMKNNPGQIWRGMPLVGADNEDILEELGASAEQIEGLYGEGLLKKEEGPFG
>NC_015738.1|WP_013978799.1|343185_344448_+|MFS-transporter
MSTARTKGAVWAWLVVLGCIGFYSIPTGVIGNTSGIFVAPVMDQFGWSQTDTTMYRTIQPLVSAICAPIAGKLMEKYNPRWILAVVSAAFGLASLASAYATELWQWNLYGVVYGITAAFYMYLAAPVLINVWFKKSAGLAISITAAVLSILAAIASPVGQELINQYGWQTSRAILSIFTTVLSVVMTIAFVRKSPSVMGLLPFGADEEGDEEEEAVAIEQEGATVAQAIKSPGLYLLILVACIFVMCAAFFQQIPAFAAHGALGAGAGAMAVSIIMVGGVVFKLVLGALNDKIGVKYTGIIAASCGALGIFLAFIAGENVALFYAGMVIFGGGYAGLTVIAPMLARASFGSLNYSQIYSWVSTGIFIATAVSFLVYGSIYDTTGSFDLCFILVIALYLLAVVLVPLTIVLSQRAWKKKNK

Crispr_ID: NC_015738_2

• CRISPR_ID: NC_015738_2
• CRISPR_location: 596817-596915
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: WYL

Consensus repeat of NC_015738_2

Consensus_repeat	Method
GCCGGTAGCGGAGGCGGCATCTAT	CRISPRCasFinder

spacers of NC_015738_2

>2.1|596841|51|NC_015738|CRISPRCasFinder
GCAAGTAAAGGCGCGCTCAACGTTTTCGGCGGCTCCGTGTCGAACAACACT

CRISPR arrays and Neighbor proteins around NC_015738_2

CRISPR arrays

The CRISPR arrays of NC_015738_2

>merge|NC_015738|2|596817-596915|CRISPRCasFinder
GCCGGTAGCGGAGGCGGCATCTATGCAAGTAAAGGCGCGCTCAACGTTTTCGGCGGCTCCGTGTCGAACAACACTGCCGGTAGCGGAGGCGGCGTCTAT

>NC_015738|2|2|596817-596915|CRISPRCasFinder
GCCGGTAGCGGAGGCGGCATCTAT	GCAAGTAAAGGCGCGCTCAACGTTTTCGGCGGCTCCGTGTCGAACAACACT
GCCGGTAGCGGAGGCGGCGTCTAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015738.1|WP_013979023.1|606932_608828_+|MFS-transporter	unknown	unknown	gnl|CDD|129794
NC_015738.1|WP_013979017.1|601560_602547_+|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl|CDD|379100
NC_015738.1|WP_013979022.1|605832_606738_+|Fic-family-protein	unknown	unknown	gnl|CDD|225095
NC_015738.1|WP_013979018.1|602571_603117_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013979021.1|605156_605633_+|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_083833036.1|589500_591540_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|237198
NC_015738.1|WP_013979003.1|584006_584900_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl|CDD|234708
NC_015738.1|WP_013979005.1|586767_587124_+|Veg-family-protein	unknown	unknown	gnl|CDD|377636
NC_015738.1|WP_013979008.1|588502_589456_-|L-lactate-dehydrogenase	unknown	unknown	gnl|CDD|133428
NC_015738.1|WP_013979024.1|608824_609244_-|peptide-deformylase	unknown	unknown	gnl|CDD|181704
NC_015738.1|WP_013979002.1|583386_584007_+|flavodoxin-family-protein	unknown	unknown	gnl|CDD|223728
NC_015738.1|WP_013979025.1|609461_610742_+|aspartate-kinase	unknown	unknown	gnl|CDD|235843
NC_015738.1|WP_013979015.1|598350_599775_-|amidophosphoribosyltransferase	unknown	unknown	gnl|CDD|223112
NC_015738.1|WP_013979001.1|582688_583381_+|TatD-family-hydrolase	unknown	unknown	gnl|CDD|238635
NC_015738.1|WP_050978563.1|584884_586453_-|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl|CDD|225420
NC_015738.1|WP_013979020.1|604681_605005_-|HIRAN-domain-containing-protein	unknown	unknown	gnl|CDD|370129
NC_015738.1|WP_013979019.1|603339_604653_+|citrate-transporter	unknown	unknown	gnl|CDD|238537
NC_015738.1|WP_013979013.1|594386_595373_+|diaminopimelate-dehydrogenase	unknown	unknown	gnl|CDD|273877
NC_015738.1|WP_013979007.1|587842_588451_+|bifunctional-phosphoserine-phosphatase/homoserine-phosphotransferase-ThrH	unknown	unknown	gnl|CDD|237437
NC_015738.1|WP_013979006.1|587229_587421_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015738.1|WP_013979017.1|601560_602547_+|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	2.4e-38	126.6	0.7

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015738.1|WP_013979023.1|606932_608828_+|MFS-transporter	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.57045e-55
NC_015738.1|WP_013979017.1|601560_602547_+|WYL-domain-containing-protein	gnl|CDD|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.08597e-33
NC_015738.1|WP_013979022.1|605832_606738_+|Fic-family-protein	gnl|CDD|225095	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning].	3.04331e-14
NC_015738.1|WP_083833036.1|589500_591540_+|FAD-dependent-oxidoreductase	gnl|CDD|237198	PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional.	0
NC_015738.1|WP_013979003.1|584006_584900_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl|CDD|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	5.73246e-108
NC_015738.1|WP_013979005.1|586767_587124_+|Veg-family-protein	gnl|CDD|377636	pfam06257, VEG, Biofilm formation stimulator VEG. VEG is a family that is highly conserved among Gram-positive bacteria. It stimulates biofilm formation through inducing transcription of the tapA-sipW-tasA operon. The products of this operon are resposible for production of the amyloid fibre (TasA) component of the biofilm. Veg or a Veg-induced protein acts as an antirepressor of SinR - part of the major overall biofilm transcriptional control system - to regulate and stimulate biofilm formation. Veg is transcribed at high levels during both exponential growth and sporulation.	4.44147e-27
NC_015738.1|WP_013979008.1|588502_589456_-|L-lactate-dehydrogenase	gnl|CDD|133428	cd05292, LDH_2, A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NC_015738.1|WP_013979024.1|608824_609244_-|peptide-deformylase	gnl|CDD|181704	PRK09218, PRK09218, peptide deformylase; Validated.	1.58267e-41
NC_015738.1|WP_013979002.1|583386_584007_+|flavodoxin-family-protein	gnl|CDD|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	7.52897e-24
NC_015738.1|WP_013979025.1|609461_610742_+|aspartate-kinase	gnl|CDD|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NC_015738.1|WP_013979015.1|598350_599775_-|amidophosphoribosyltransferase	gnl|CDD|223112	COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism].	3.69143e-75
NC_015738.1|WP_013979001.1|582688_583381_+|TatD-family-hydrolase	gnl|CDD|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	8.95201e-78
NC_015738.1|WP_050978563.1|584884_586453_-|putative-DNA-binding-domain-containing-protein	gnl|CDD|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	3.92549e-73
NC_015738.1|WP_013979020.1|604681_605005_-|HIRAN-domain-containing-protein	gnl|CDD|370129	pfam08797, HIRAN, HIRAN domain. The HIRAN domain (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. The HIRAN domain is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this domain functions as a DNA-binding domain that probably recognizes features associated with damaged DNA or stalled replication forks.	1.10941e-10
NC_015738.1|WP_013979019.1|603339_604653_+|citrate-transporter	gnl|CDD|238537	cd01117, YbiR_permease, Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains.	1.56271e-39
NC_015738.1|WP_013979013.1|594386_595373_+|diaminopimelate-dehydrogenase	gnl|CDD|273877	TIGR01921, Meso-diaminopimelate_D-dehydrogenase, diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.	1.12949e-141
NC_015738.1|WP_013979007.1|587842_588451_+|bifunctional-phosphoserine-phosphatase/homoserine-phosphotransferase-ThrH	gnl|CDD|237437	PRK13582, thrH, bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH.	1.83706e-121

Protein sequences

>NC_015738.1|WP_013979013.1|594386_595373_+|diaminopimelate-dehydrogenase
MKTRIGIMGYGNLGRGVELACRQNDDMELVALFTRRDPASVRPLTEGVTVYSTGDLAAHTDDVDVLVICGGSATDLPEQTPACARLFNVVDSFDTHANIPVHFAQVDEVAKAAGKVAIISAGWDPGMFSIARLYANCVLPDGADYTFWGRGVSQGHSDAIRRIEGVVDARQYTVPVPAALEAVRAGENPQLTTRQKHTRECYVVAEEGADTAAIERAIVEMPNYFDEYDTTVTFISQEELDRDHAGIPHGGSVIRSGATGENGESHHVIEYSLKLDSNPEFTGSVLVACARAAHRLASEGQTGCRTLFDIAPAYLSPKNGDELRATML
>NC_015738.1|WP_083833036.1|589500_591540_+|FAD-dependent-oxidoreductase
MPAARQENHVRIDSNRTEDTGVSTDFVLTVSQHPDRLETCLHLRRSRAFPAHDECGKRGLTEYRGGSLAKLSIAPRARDDRRIDISIDNFTRRVKAVPPGTCPLVVQLTLLQTSAAQTCGKCVPCRDGLPQLVALLERVVACEADADVLDSMRALAQMVCDTSDCAIGYEAARALLESMDTFADEYQSHVGAHSCQEGIGQTVPCETFCPAHVDVPAYIALTAAGDYAGAVNMIRKDNPFPTACAFVCEHPCELRCRRTLIDAPINIRGIKRFAVDQISSDKVLPPAHGVDTARKVAVIGGGPSGLTCAYFLALMGHRVTVFEAREQLGGMMRYGIPAYRFPRERLDEDIRGILSAGTITAQCNTPVGALEMAEIIEEFTAVYVAVGAQAGKTLRMEGADAAGVMSAVELLSAIGDGNYPDFTGKKVVVVGGGNVAMDCARTAVRAGAAEVSVAYRRRKEDMTALPAEVESAVAEGVEMLVLEAPVRVETNEAGQCVALITQPQMIGPVRGGRPAPVAANKPERRIEADVVLIAVGQDIVADPFEKVGMKTTRGTFNADEYLAAEGLEGVFVGGDCQTGPATVIKAIAAGKVAARNIDEYMGYHHKLDPGVNAPRAQGNDRTPKGRVDLVERPARERAHDFEGVEYGMSREEVLQECGRCLRCDQYGCGTLEEGRVQYA
>NC_015738.1|WP_013979008.1|588502_589456_-|L-lactate-dehydrogenase
MAGILNNRKVAIVGCGFVGAATAFALMQSKLFAEMVLIDVDRERAEGEALDIAHGMPFADPMNIYAGDYDDAADAAIIIVTAGANQQPGETRLDLVHKNVRIFKSIIPEIARRDYQGILLVVSNPVDILTYVALKLSGMPDNRVIGSGTVLDTARFKYILGEHLGVDPRNVHARIIGEHGDSEIAVWSTANVSGIPVNDFCELRGHFQHDEAMRRIAEDVKNSAYEIIAKKKATYYGIAMSVKRICEAIIRDEKPILPVSNYQHGIHGLSEVVLSMPAVVGKDGIEYQVPAPLSDDELTRLHASADALKAVIAELDL
>NC_015738.1|WP_013979007.1|587842_588451_+|bifunctional-phosphoserine-phosphatase/homoserine-phosphotransferase-ThrH
MYVTCLDLEGVLVPEIWIAFSEASGIPELTRTTRDEPDYDKLMAFRLGILREHGLGLADVQRTIATIDPLPGAKEFLDELRELTQVIIISDTFTQFAKPLMEKLGWPTIFCNELDVAADGEITGFRMRCPESKLTTVRALQSCGFDTIAAGDSHNDLGMIKASAAGFLFKSTDAIKADNPTIPAYEEYGDLMAAIKRAMGNA
>NC_015738.1|WP_013979006.1|587229_587421_-|hypothetical-protein
MTVTESPAFSEQFTELSQAINSLLQHASTTDDIEMLREEALRVVADCSHTASSQLPSLKGKGC
>NC_015738.1|WP_013979005.1|586767_587124_+|Veg-family-protein
MDLAKQAKIVDSIHDTLHDFVGQRLKVRANMGRSKIVESEGVLMQVHPQLFIMEVDRKRGRTARQSYQYVDVLTGMVELSQNGEPLFEPFIPDAPQNEGAPTETASLVGDFDEETMLS
>NC_015738.1|WP_050978563.1|584884_586453_-|putative-DNA-binding-domain-containing-protein
MSDEALIYAIAHMKTTGTDSQFYEVKTCRKELTRDIGRTISGFANGSGGTILCGLDENANFSPVEGFDAARIQDALANYCGQKMTPPIRAEIQVRVLDGAPIVAAYIPELRPKQKPCYITTSGCYNGSYVRVGDGDRRLSSYEIDRLISEHEQPRYDDVIVPDATIEDLDPTLLAGLLEREKTMHPRNLGELDDETVLCKLHVVKADEKGNLRPTLAGLLALGSYPQEFFPRLVIAFTCYPGLTKTEALPDGRRFVDSFTCVGPIPQMIEDAVAAATRNMRIGSRFEGAFRYDVPDYPPLALREAITNAVMHRDYSPDAQGSAVYLDMYADRLEIINAGGLFGAVTLDDLGSDHVAGSCRNQHLASILESTPRGLSHPSSTSGYVAENRGTGYLVIKQELERIGKPAPLARASLAQFSLTFFKEQLPYEQKLQETVSYPGKMNNSTESIEYAIIQIAEAKESVSMKELMDALKRSRPTVRKRVANLVARGVLVPTQAKNSPQQRYRLSARFATREASSYANF
>NC_015738.1|WP_013979003.1|584006_584900_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MAKLSPLASVAETRSVLEAHGLTTKYSLGQNFLINDGILQKIVALADLTNADQVLEVGPGIGTLTVALLKCAGRVVSVERDADLPAVLTQTLAPWTDRFTLIEKDALDLQADDLPFAPTKLVANLPYAVAATVVLDYFERFPSLESATVMVQKEVADRMAATPGTKNYGAYTVKLRLYAEPAGRFAVGPGNFFPPPRVESAVLRLNRRIVCDDAGVPLNAAAIKASCTMAEASFTNRRKTLANSCKTYFASRGQEGACVVAALLCIFEQAGIDSKRRGETLTLNEFINLGRAYQKFA
>NC_015738.1|WP_013979002.1|583386_584007_+|flavodoxin-family-protein
MNRLIISGSPRARGRSAGLAEALRFAFDEEGAGKTDLVLLSDVHIAPCTGCEACAANIGRNELYCIIADDMVRVRTLLNACDELVLVSPVYFAGAPAQLKSFLDRLQPYFYANWRAKPKRPASLYVVGEGGDPHGFVPLVGEVRSALAVAGFALKDVHDWVELISPDGALPEGADPVHDGRVHPASTYTCTSPDGTWPRSVQQGEV
>NC_015738.1|WP_013979001.1|582688_583381_+|TatD-family-hydrolase
MPRVRIIVGCHPHNAKYYDKSLEVELRERLADPRVSALGEIGLDYHYDFSPRDVQREVFRRQVRIAHECGLPVVLHVREAHDDALALMREEGWPEAGTLLHCFNLDGEVLKPWVEAGCYVAFGGPLTFKNADEVREAAKQVPLDRLLTETDAPYMTPEPMRGMTCGPEHVIFTAARLAEVRGCAPGDERKQLLDQLMENARALLDRPATSWQKGEAAAFYTKAFDAHEGE
>NC_015738.1|WP_013979015.1|598350_599775_-|amidophosphoribosyltransferase
MGGFFGAAAHQDVVLDVFFGVDYHSHLGTRCAGMIFHDSEDGFQREIHSIENTPFRTRFEADLAGFHGCSGIGCISDTDPQPLLVRSHLGTFGITTVGIINNAEDLVEENFASGGRQFMAMSSGKVNTTELVAALINQKDDFVSGIKYAQEVVEGSLTLLIIKDDGQIIAARDKMGRLPVLIGKSDDGHCISFESFAYHKLGFRDEYELGPGEIVLINADEYRTISPAGPQMKICAFLWVYYGYPNSNYEGVNVEVMRYRNGAIMARNEAAADGVPNVDYVAGVPDSGVPHAIGYSTECNIPFARPFIKYTPTWARSFMPSNQEVRNRVAKMKQIHIPELIKDKKLLFVDDSIVRGTQLRETVDFLYKCGADEVHMRSACPPIMFSCKYLSFSSSHSDMELISRRVVQELEGDEGQNHLEEYADGSTERGKCMLKSICEQMGFDSLGYQTLDGMLEAIGIDPEKVCTYCWNGKE
>NC_015738.1|WP_013979017.1|601560_602547_+|WYL-domain-containing-protein
MSINRQKLKLLYLMKMLTEETDSEQGLTMTQILEKLEEQGIAAERKSIYRDIEALREFGLDIRTYQRAPVEYAVEDRDFAFPELVLLVDAVQSSRFLTQRKSDALVRSVKQLASVRQRKLLDKRLHVEGRIKSQNESVFNNVDRIQEALAQRRKLSFLYFQYDAKKNKIKQHEGERYVETPVQLVYSDGYYYLVAYNEKHESFPHYRVDRMDKIEVLDEPACRNERIATYDVTELESHAFGMYSGQPVPVVLLVTDEAMGGVIDRFGRDVESKPVGEGQARVYVTVMKSPVFFGWLAQFGDRVRIEKPTWLVDEYRAYLADILDAYGK
>NC_015738.1|WP_013979018.1|602571_603117_-|hypothetical-protein
MPLNTAEVFTHLSRTWCVDAHRLTTDSAQQAHLLEGSFVADILSLWDGRTESWLTGSPIIIRLEECDVALFTMREPYLAPYFGCVETESPVASLPTQGEAEACGEGHTPTKTERHSIFWKTLRPCSYAIGRQLKELAFETDVEGNILAAVAHLDDEATLRITSFGAECAIDTGMPLLAQAV
>NC_015738.1|WP_013979019.1|603339_604653_+|citrate-transporter
MVKTGLIFVREHVVLCASAAVALLTMFFVPPDAAYAEYIDVKTLACLFGILAVVGALRTVGALEVAARVLSSRLATRRLAVLSLVGTTLVLSLLATNDMALVVMLPLSAAALLRAGWDDLIPFTFIMQNLAANLGGMILPFGNPQNLYLYECFDITLSDFLTTMAMPFVLSMALIVVCCTVFVRGNKSDGSHFGRRADARPRVSARAHGGEHRPQSAGKIGAARVSTRGEEGVFVDEANGVSSSAATGDERSSVDPVRTTVYVALFLLVVGSVLRLVPWPAALAAVVGVLAVLDRRALRCVDWGLLLTFVCFFVFAGNMARIPAVEELLAHGMEASPLMVSAGVSQVISNVPAAVLLSQVTASWQALLVGVNVGGAGTLVASLASLITFSHFRTFKKSFPRRSGLASCTTARFVALFSAFNFAFLAILLVSLEAVGF
>NC_015738.1|WP_013979020.1|604681_605005_-|HIRAN-domain-containing-protein
MYEPSKHIATYHIAGFQHWDGALILDQLKPGTPLTLAIEPDNPYDPEAVALFFDSVKLGYIPASESSLPFLMSYFGHDVFELRVLQIDSQATPWKQVRVGLYIKDKR
>NC_015738.1|WP_013979021.1|605156_605633_+|hypothetical-protein
MVVFGNKTKDGKTVANFSTVSVPGIDAGWAVEAVLGDRELVIRPRVTKVPEVILAYERIFRCTLETKEQIIKKRKSFYGRAIIGGLIFGPVGAVVGGLDGSTMKRKKSMRTYFSIEYGAFDNSKVFVLEVVGATMGLSKWLKVFKSYAPWVVLEPKSK
>NC_015738.1|WP_013979022.1|605832_606738_+|Fic-family-protein
MDDEYRRVEETESYETKAAYWAAAKGLQAVDGLTTTKYLDQVAENHIVGRYTSTEAAQLVKNYYEKRAAHGESLEGREADLVSARIVELLESRAFSYRPTMLSFIHGRLFKGLIDHPYDAKWRDYNFTKSEPILAGETVVYADFGIISDNLTYDFQEFDHSGFTLSAEDKSQRFESFITFISNIWQTHPFVEGNTRTVAVFAELFLRAKGARIDNDVFAQHSLYFRNALVRANYSSLALGIPEDKTYLKLFFENVLFGAHHELKNRTLYCDALFVAKGLEVPSDAFQAREKKTSIPEETSL
>NC_015738.1|WP_013979023.1|606932_608828_+|MFS-transporter
MQGKSLVLLLGVLYGSAFIAGFNENLVNMALMSIMADYGVDSVTAQWLVTGYMIVATVVVTCMAFLYRRFRLRTLFFCAAGLSIVGSVMGLVSVSFEMLFVARLVQAVGTGIFIPLMMNTILVVTPKNKLGAYMSIGSCMITFGPAFAPVVCGALVTGFGWHSIFVVPIAAMAVLAVMGFFFVKNLETSEAHLDVLSVVLSALVLIALSYGLAQLTIEPLVAGVSLVVCLVLAAVFVVRQLRCAHPLIDLTPVKSRSFWPALLLATVAMMSTFSMSVLLPLYFEGGAGMTALVAGLVILVPVLANAGTSLWGGRIMDKRGEWPLLPLGFGAIAVGFAALALVSPTLSMPAVFAGALVVYVGVGFIFSPSQTAGLRTLPPQQNPFGVALMTTFVQIAACIGPSLYIGIMSTAQMDSMAQGAAVTQATANGFALAMVVAAVIAALGCALAFAYARAARTRAAAQAAERAADPQSVLASLMETNPYTLPTSATVGQVMRSFVDLKVGGLPLVDEAGHPAGFVSDGDVMRYLADKHPVITGAYSLMEAARSQTFDERLRELMALPVNVIATEKLVSLDAGATLEDACALLATHRLKKVPVVREGVIVGTVNRSDVLRYAMDTCLQTVPDVSEATI
>NC_015738.1|WP_013979024.1|608824_609244_-|peptide-deformylase
MIKEIVKDEAVLSQPCRPATAEDASVAEDLVDTLLSLDNAACLAANQIGATICAFVYLDDSEQPHVMYNPVLQRALYPTKTVESCLSREGDSKVTRFEKITVLFEELNDDKLVSRKREFEGWTAQLIQHMIDHCKGKLV
>NC_015738.1|WP_013979025.1|609461_610742_+|aspartate-kinase
MSLIVCKFGGTSVASPERIQMVAKKLIAKKQQGHDVVAVVSAMGKTTDELVGLAAALNTNPPAREMDRLLSTGEQVSMTLLAMAIEARGYKAMSFTGRQAGIETDGTHAKAKIVKVHNERIMEALDKGMIAVVAGFQGIDANGDITTLGRGGSDTTAVAVAWGIGADVCEIYSDVDGVYTADPRVCPRAKKLDVISYDDMLELSSSGAGVLQMRAVEFARKYNVVIHSRSAFSEAEGTYIKEETDMMEEAVITGIAHDTSEVKFTIRGVPDMTGVAAKVFSALAGNAVSVDMIIQNISEDGITDISFTCPGADMGRAKETVERVLPDISARDYDIDEDIAKVSLVGTGMKSSPGVAARAFQTLGENQINILAISTSPIRLSVVVDGAQAAEAVRCLHHAFDLDSDSVFEETQLSAEEIAAKMNKGR

Crispr_ID: NC_015738_3

• CRISPR_ID: NC_015738_3
• CRISPR_location: 1375730-1375804
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_015738_3

Consensus_repeat	Method
CAGGACTGTTTGAGCATGGCATGT	CRISPRCasFinder

spacers of NC_015738_3

>3.1|1375754|27|NC_015738|CRISPRCasFinder
ATCTACCCACAATCATCCGACGTTTCT

CRISPR arrays and Neighbor proteins around NC_015738_3

CRISPR arrays

The CRISPR arrays of NC_015738_3

>merge|NC_015738|3|1375730-1375804|CRISPRCasFinder
CAGGACTGTTTGAGCATGGCATGTATCTACCCACAATCATCCGACGTTTCTCAGGACTGTTTGAGCATGGCATAT

>NC_015738|3|3|1375730-1375804|CRISPRCasFinder
CAGGACTGTTTGAGCATGGCATGT	ATCTACCCACAATCATCCGACGTTTCT
CAGGACTGTTTGAGCATGGCATAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015738.1|WP_050978525.1|1371879_1372917_-|hypothetical-protein	unknown	unknown	gnl|CDD|236669
NC_015738.1|WP_013979661.1|1370033_1371365_+|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240548
NC_015738.1|WP_013979659.1|1368449_1369448_+|membrane-dipeptidase	unknown	unknown	gnl|CDD|366534
NC_015738.1|WP_013979675.1|1387711_1388758_+|tryptophan--tRNA-ligase	unknown	unknown	gnl|CDD|234866
NC_015738.1|WP_173363552.1|1374112_1375594_-|glutamate--tRNA-ligase	unknown	unknown	gnl|CDD|234953
NC_015738.1|WP_013979671.1|1382051_1383311_+|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl|CDD|235640
NC_015738.1|WP_013979676.1|1389031_1389502_+|ribosome-maturation-factor-RimP	unknown	unknown	gnl|CDD|234627
NC_015738.1|WP_013979668.1|1376636_1378007_-|carboxylate--amine-ligase	unknown	unknown	unknown
NC_015738.1|WP_151197440.1|1385763_1386477_-|YitT-family-protein	unknown	unknown	gnl|CDD|225239
NC_015738.1|WP_013979667.1|1375807_1376545_-|DUF1461-domain-containing-protein	unknown	unknown	gnl|CDD|377811
NC_015738.1|WP_013979674.1|1387044_1387560_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013979672.1|1383481_1385785_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl|CDD|236981
NC_015738.1|WP_013979670.1|1379592_1381923_+|primosomal-protein-N'	unknown	unknown	gnl|CDD|235514
NC_015738.1|WP_173363542.1|1378221_1379535_+|methionine-adenosyltransferase	unknown	unknown	gnl|CDD|235374
NC_015738.1|WP_151197550.1|1372944_1374069_-|4Fe-4S-binding-protein	unknown	unknown	gnl|CDD|319871
NC_015738.1|WP_013979662.1|1371405_1371807_-|PaaI-family-thioesterase	unknown	unknown	gnl|CDD|239527
NC_015738.1|WP_013979658.1|1367472_1368450_+|EamA-family-transporter	unknown	unknown	gnl|CDD|273359
NC_015738.1|WP_013979660.1|1369575_1370034_+|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
NC_015738.1|WP_013979657.1|1363897_1367476_+|transcription-repair-coupling-factor	unknown	unknown	gnl|CDD|224118
NC_015738.1|WP_013979656.1|1362963_1363626_-|endonuclease-III	unknown	unknown	gnl|CDD|223255

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015738.1|WP_050978525.1|1371879_1372917_-|hypothetical-protein	gnl|CDD|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	2.36051e-08
NC_015738.1|WP_013979661.1|1370033_1371365_+|MATE-family-efflux-transporter	gnl|CDD|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	1.11582e-93
NC_015738.1|WP_013979659.1|1368449_1369448_+|membrane-dipeptidase	gnl|CDD|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	1.84218e-75
NC_015738.1|WP_013979675.1|1387711_1388758_+|tryptophan--tRNA-ligase	gnl|CDD|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	1.14318e-122
NC_015738.1|WP_173363552.1|1374112_1375594_-|glutamate--tRNA-ligase	gnl|CDD|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_015738.1|WP_013979671.1|1382051_1383311_+|RNA-polymerase-sigma-factor-RpoD	gnl|CDD|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	0
NC_015738.1|WP_013979676.1|1389031_1389502_+|ribosome-maturation-factor-RimP	gnl|CDD|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.22726e-47
NC_015738.1|WP_151197440.1|1385763_1386477_-|YitT-family-protein	gnl|CDD|225239	COG2364, COG2364, Predicted membrane protein [Function unknown].	5.15735e-23
NC_015738.1|WP_013979667.1|1375807_1376545_-|DUF1461-domain-containing-protein	gnl|CDD|377811	pfam07314, DUF1461, Protein of unknown function (DUF1461). This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long. These are possibly integral membrane proteins.	1.745e-09
NC_015738.1|WP_013979672.1|1383481_1385785_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl|CDD|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NC_015738.1|WP_013979670.1|1379592_1381923_+|primosomal-protein-N'	gnl|CDD|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NC_015738.1|WP_173363542.1|1378221_1379535_+|methionine-adenosyltransferase	gnl|CDD|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NC_015738.1|WP_151197550.1|1372944_1374069_-|4Fe-4S-binding-protein	gnl|CDD|319871	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein. This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.	7.14989e-10
NC_015738.1|WP_013979662.1|1371405_1371807_-|PaaI-family-thioesterase	gnl|CDD|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	8.83535e-26
NC_015738.1|WP_013979658.1|1367472_1368450_+|EamA-family-transporter	gnl|CDD|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.06172e-18
NC_015738.1|WP_013979660.1|1369575_1370034_+|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.84523e-12
NC_015738.1|WP_013979657.1|1363897_1367476_+|transcription-repair-coupling-factor	gnl|CDD|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NC_015738.1|WP_013979656.1|1362963_1363626_-|endonuclease-III	gnl|CDD|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	9.00716e-101

Protein sequences

>NC_015738.1|WP_173363552.1|1374112_1375594_-|glutamate--tRNA-ligase
MNVRVRFAPSPTGRLHVGGARTAIYNWAFARATGGDFILRIEDTDPERSTEENVQVILNAMKWLGLDWDEGPEVGGASGPYFQTQRMDTYTAALELMKERGSVYPCFCTKEELDVKRAQAEATEGGYSGYDRTCRNLDPAEAAARIEAGEPHVWRLRVPENHGPIEFDDAVYGHVSFPAEVMDDMIVVRTDGSPTYNFAVVCDDANMGITHVIRGDDHLSNTPRQILIYEALGFDVPTFAHLSMILGPDGKKLSKRHGAASVEEFAERGYLPDAMVNFLALLGWSLDGETTLIDRETLCHEFSLERVTKKDAVFDETKLDWMNGQYIKDMGAAAWVQASLPWLFELGATADDVAARPEFYLGLYPLVAERLQRLDEIPGKLAFMFWGPEVRELDEKSVNKVLKKEGARADEALVACRSILADESRAWEAKSLEEACRALGEELELKPKLLFQPLRVAVCGNMVSPPLFESIELLPREDVLARIDYVTKEVFGG
>NC_015738.1|WP_151197550.1|1372944_1374069_-|4Fe-4S-binding-protein
MEGPHATSPEDPSTQPLSAQNDDKDTVARQNRIVVLRDFCVRTAGAECERCALACPHDAISFNEDGLPVIDADACTYCGICLGICDAFSSSRVTMEDLHERFRRIAQRGEDVVLTCKENIFPGLEPAANVVVLPCLATLSPEFWTLVLTENIPIKIAADLAYCADCDRAGAMGETLYTHAIETAEHYSGNNVGYIDLIPEKENLVKDLANPVGVDRRSAFSNLVGDVGDIASGKRRLRNSEVLHEFLDRRERARAQARLQLSDGITFADFAPEGQARKTMWPKRKMLLEALEVDPAIASRIPLVVSETACDLCTNIHACTQVCPTGARFVNPANELLGYDIRYCIGCGLCVDACPEGAVSLIETTAEALRAPKE
>NC_015738.1|WP_050978525.1|1371879_1372917_-|hypothetical-protein
MSEPERPPIMPDGSTPPPPPPSASPQQPNGYGAQPYGQPQSYGQPQQPYGQPQQPQQPYGYAGQQPPYPPYPVQPPYPMPAQPAPKKKVWPWVLIACLLVFLLGIGGCVGCVSCALYFDSDYNGSFDPRHSDRYGYDYNYDYDSGSSDSSISGGFTIDDIKAAIGTDLPNTIEDGRASSGVYEVGVGKDLEPGLYFIEGSQTEEGKFHVFDDYENGVYEIEKTISYFGNYFTELEEGDAIVFLGGDTARMYLANRADFHPSADPYRSGLYRVGTDLPAGTYNITVDKEAAVNTDQTCAAYVMKDIRFDEDSIIEEKYVIAGGTQTVTVKDGQWLELYATIATPVS
>NC_015738.1|WP_013979662.1|1371405_1371807_-|PaaI-family-thioesterase
MLPDNPTIDQIEAVFAKDRFATEAAGCRVVSGKRGHAVAEMELSDIHRNALGSVMGGAIFTLADFALAICCNIGEEPTVGLDSTISFLRSTKGTKLTATATCDKPGRHVSFYTILVEDDLGKPIAKVNATCYR
>NC_015738.1|WP_013979661.1|1370033_1371365_+|MATE-family-efflux-transporter
MAIKLSDHFTYGRLVRFALPSIAMMIFTSIYSVVDGLFVSNFAGKEALAAVNLVFPLAMGLGSVGFMLGTGGAALVAKTMGEGDAVRANRLFSFISLAAVTAGIVLAFVGVVALEPVLALLGAQGSLMEQSLLYGRILVVALPLFIVQNVFLSFFIAAEKPQMGLIVTVAAGVTNIVLDFVFIVVFGWGIAGAALATAAGQALAAVAAALFFARSKTSRLRFTRPLVDFRALGATCVNGSSELMTEVAASVVSMLYNYQLMMIAGADGVAAYGVIMYVNFIFTAVFFGFAMGTGPVVSFHYGARNENELKGLFRKSMILVGGTGAAMVAASQLLAGPLVNVFVGYDPALAAMTLHGFRIYAVSFLVCGFNIYGSAFFTALNNGKVSALISFMRTLVFETSTVMLLPLVWGIDGVWSAIIVAEACALVLTTFFLVYLRKPYGYA
>NC_015738.1|WP_013979660.1|1369575_1370034_+|MarR-family-transcriptional-regulator
MDRKSQEKALREYNGLYRFSNEIYHDAALAAGLSDSAFDILYCLYDMGDGCSQKDICEAWYLTKQTVNSSVHKLVREGVVYLDTEGGRGTRLYLTKSGRALVEARIAPIIEIEKSAFAAMSEEECDELLRLMRLYLGRLREQVDVFKQEGVR
>NC_015738.1|WP_013979659.1|1368449_1369448_+|membrane-dipeptidase
MTLRVFDLHCDTLDRLAFYGDASVPGGFAEHDAAIPADRMATLADNDAHISLARMAGFAWCQCFAAFIPDVVHGDVAWDLFERVQRVWERELECCTDRLVRAHTMADVETAHAAGKTAGIFTVEGASFLEDNAAAEVRLDALAEAGVRMVTLTWNGPNALGSGNDTTDGLTAFGRVTVRELERRGIVVDVSHLNDEGFKDVCAVAERPFVASHSNARVLCGHPRNLADWQLCELADRGGIVGLNFCRDFLSEVHPDPTPDDVLRHVDHVLEVAGEDVPALGSDYDGCDVPTWLDPCDHIGTLHDLLTHQFGRTVADKLFFENARTFFTRLEG
>NC_015738.1|WP_013979658.1|1367472_1368450_+|EamA-family-transporter
MRQGIAEGAALLRRRHAKGVACALVGAGLWGFSGACAQFLLANYDITPSFITAVRMLGAGVIFLLVLAVRNREQLAAMLSERRTVGQLAVFGGVGLFLCQITYTIVIGYTNAGTATVLQTTGIAFVMLFTCLIVRCLPQTREIVGLVAAVVATWLIATQGDLGALVLPPLGLAWGIANGLSVAFYIMYPKKLFARWGSFAVTGIGMLMGGVVATAVYVAGVAFGEPLVLPALDVAGVLVFTAFVVVGTFAAFALYLHGVSVVGSVQGSLLGAIEPVSATLFSALWLATAFTGADLAGCALMIAMVFLVTTENRVCTPAAFDEGKA
>NC_015738.1|WP_013979657.1|1363897_1367476_+|transcription-repair-coupling-factor
MLIDSLTFTLEKSGCLDTFWGKLDAGEDGTLGVANSARPFLVAARFAHRPQATLVVVAGEDAAVAFARSLAAYLGEERVMRFPERADYPFAQKASDPAQVARRMEAVHALATGREVVVVASARALVRALPPVGSDVFMPVSLEAGCELADTPGAQRASVTEFSDLARALEERGYVNTGELDGPGTFAVRGGTVDVFPGNLVYPVRLDFFGDELDEIRRIVPTTGQTISSLDRVDIYPVVEFSCSKSGLARARKKLERPAETNPVLREVLEKLDGGLRFDGADVLLPYLYQATATLGDYVRPSALTTLIEPRSLFDDMTHAYEDICGRAKGSGVPVAGLYVPPANVSFGEGQRATYVSIMRVGGQIDDELPVKRVEVAGHPDKLFGRLRSLVDGDYTVVFSAPNFRARQDMKLAFVDNGLPIQEVLDVLESPSGSGVSTAGLREETSADAARDPSTSTLRVSAQDDKGHAKRRLRRGVVNVVDVDVPLGMIIPKAKLALVSVSDTQGASSSARPTRRIDVTEITFPYEPGDYVVHAAHGVAYFKELVRRDVDGTARDYLLLEYAEGDKLYVPVEQLDRVTRYVGPEGASPRLTRLNTADWSRALARARKATKKLAFDLVDVYARRASTQGYRFGPDTAAQREMEEAFPYQETPDQLAAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDAKQVMVLCPTTILAQQHFTNFEDRFEPFGVRVEVLSRFRTPAQQAAALRGFQEGEVDVLVGTHRLLSRDVNPHDLGLVIIDEEQRFGVGHKEQFKNLRESIDVLTLSATPIPRTMQMSLSGVRDMSLILTPPDERRPVDVHVGEWDPDLVSAAIRRELARGGQVYYVSNRVRSIDDAVARVAAAAGEARVGVAHGQMSKDELERVMEDFSAGELDVLVATTIIESGIDNPHTNTLIIEDAQRYGLAQMYQLKGRVGRSSTQAYAYFMFPERVNLTEEAQARLTALGEHTDLGSGMRIAMRDLEIRGAGSLLGAEQSGNMSAVGFDLFAQMLAQAVNATREGDLKAMDALPPALSDITVNVPGHTYLPDEYVPDADERVLWYRKIAGAATEQAVEDVRQDLLAKRPDMPQAVKNLLEKARIKAFANEHHIKTVSVTGGRLVVEPIDIPRDKMTGLRRSGGRYLADKRKLQLPLRHFKLDEGDNLLGPVAEFLEELA
>NC_015738.1|WP_013979656.1|1362963_1363626_-|endonuclease-III
MPRETMIAKRERALVVARRMNEHYPAAECALHYWGDPFRLTIAVLLSAQTTDKGVNKVTPALWERYPTPADLAAADVHDVENIIRTIGFYHTKASNVIKCAQMVVADYAGEIPRDIDELQKLPGVGRKTANVVLNEAFGIVEGIAVDTHVFRIAHRLKFAGPSSDTPAKTETALLKLYPREYWGPINHQWVLFGRETCTARNPKCAECFLCDLCPSCCKA
>NC_015738.1|WP_013979667.1|1375807_1376545_-|DUF1461-domain-containing-protein
MKRYIDKAAAIVAAISLAITFVAAGFAACAAFPQTTEMLADAFSGMDNPDTPFSHDELVQAAVATRDYTVGSNDRDVIFSELHAINKSAETPYAEASPDELASAPEAYTLDADALSHLDDVYGVVVVARIALIIIALLAVAACAHVGVRVGRRALGGVCMVAGIGVLTVFALLAIWVLVDFYSFFAAFHSLFFADGTWTFSYESLLITLYPPAFWMGMGGVWLATTALLSILGIVIGAILRRRLG
>NC_015738.1|WP_013979668.1|1376636_1378007_-|carboxylate--amine-ligase
MPTNADYTREYFEIMDSLDGDIVGRRAAYDYMQHSTAIVHHEVVACSYVPRLFNAETYRAMKYTAETAHRILCKVIEHYLADPEYRRAFDFNPRLEELILLPRGYESVLPFARVDTFMNEDDYRMKFCEFNGDGSSGMNENREITNSILTTATFQEFANRHQVEGCELFERWVDTFLEIYATYEHRVENPRIAICDYLENGVVDEFHIYAELFRDRGVACIVADVRDLQFDGEVLRDVEGNPINAIWRRCVTNDVIDYWDDSQQLIEAVRAEKVALIGSFAGHIVHDKQIFKVLFDERTTAFLDGDEISFIEETVPMTAFLDDNYINVEQIRANKDEWIIKPSDHYGADEVYAGCAQPQERWEELVDRFANSRAGYPFIVQRYIRPFKTETLPPDAGIDQVTDAEVSCEPELYNNLNGLYLYDGEFAGVFSRLGPLPTISKDMQGMTAATIWVDRE
>NC_015738.1|WP_173363542.1|1378221_1379535_+|methionine-adenosyltransferase
MSQGGPADIDEGGTAVSNATSSYLFTSESVTEGHPDKVCDQISDAILDAILAKEIELAAQGYIAPDGHPADPAQVRVACETMAMTGMVIVTGEIRTQAYVDVPAIVREVLREIGYDRAKYGFDCDTCGVLNAIHDQSPDIAQGVDESWEAQHGLAAEDDPYERVGAGDQGMMFGYACDETPTLMPLPIYLAHRLAERLTEVRKDETMPALRPDGKTQVSVRYENDRPVHVEKVVVSTQHAEDIEHEALRAQIIANVVEPVLAREGVSLAPDAEIHVNPTGRFVIGGPMGDAGLTGRKIIVDTYGGMGRHGGGAFSGKDCTKVDRSAAYAARWVAKNVVAAGLAHRCEVQVAYAIGMAKPVSVMIDTFGTNAVPETDIQAAIDAVFDLRPGAIIDELDLRRPIYQKTAAYGHFGRELPEFTWEQTNKADALRKACGLV
>NC_015738.1|WP_013979670.1|1379592_1381923_+|primosomal-protein-N'
MKLASVILDIPTQALDAPYTYAVPVDDGEGDLSIEVGCAVLVPFGGRRAIGFVIGIGEHAEGDWPEGLDPAKLKGIVRAVSRPYFDEEGAACARWLSERYIAPLSSCVRLFTPPGGVPRMVRAREGYWRLEEPAVGEVDDRWVVPGPALAQFEPRKNAVKQASIVAAVRRGELRVAELAAEFGAVSGPLKTLEKQGVVRIEHRRRMRGMQPGEPLSEQAGGFTPSPKPPLTSGQAKALAAIDAARQRAAGEVVLVDGVTGSGKTEVYLQAIEAALDAGRTACVLVPEISLTPQTVGRFRGRFGDTVAVMHSRMSQGERFDQWDFIRSGQARVVVGARSALFTPLTNLGLIVIDEEHEGSYKQDSAPRYHARDVAVWMARRAGAAVVLGSATPSIETLYACAKDPTWHQVALPERANGKPLPEVRVVDMAKEFSAGSRSMFSGALSRALAEELSAGRKAVLLLNQRGFAKFLLCRECGFVPECPSCSTSLTYHERGNFLICHHCGYRVPAPSVCPECGSPYLKKFGAGTQRVEADLRVLLDETPGVGPDVPIVRMDADTTSGKGAHQRLLEEFAAADAAVLLGTQMIAKGLDFEDVTLVGVINADTMLKLPDYRAAERTFDLIEQVAGRAGRAELPGRVLVQTYEADAAPIRAAAAYDRALFLRDELPKRRLLGYPPYVSLANVLVWGKDEPEVRRVASGLQDELEKAVRDFGGEGWSVLPATPCVLAKLRGTYRWHIVVKAPIHADISSVLLPLFRHRKPEKDVNVAVDVDPDDLL
>NC_015738.1|WP_013979671.1|1382051_1383311_+|RNA-polymerase-sigma-factor-RpoD
MAQSSKNKAAEPEKNNEKAPIENEEVLDDMSDDIDGDEIDSPVDVTGVIDDTDTIEDKLTDGLAEDAEDEDLLEGIPEEELKATVDVQLPKVSSKSKVRSARKRSADAGITVLTGDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAATEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPSPEEIGKEMGLPAERVREIQKISQEPVSLETPIGEEEDSQLGDFIEDDAAVVPPDAASFSMLQEQLSKVLDGLAERERKVIALRFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKLKDYLED
>NC_015738.1|WP_013979672.1|1383481_1385785_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MENKNLELFASCLAGLEAPLAEELKRLGIKRVRPLGGGVAFYGDVRQALSACLWSRLASRILVVVGRVDARDAQSLYQGVRALRWEDVIVAGASIALRAHGMNNELRNTKFTALKVKDAVCDQLLETRGVRPDVDTATPDALIDVRVHEGKATVSLDLAGESLYRRSYLSDDDTQDASLSCALAAGVLALADWRDRFAGGAALVDPACGDGMLVVEAASMACDQAPGLVRDHWGFFGWALSEPEVFNELISEADERFERGLLRVVGEEALEPAASTPPDIARVRIAGASTSSPAIARARMHAKRAGLRQVVSVEQADAQSVGELVERVSSVAEQAAPDGTPRCVVACELPGAERMQSEARAQAEAAAFIAAASSAPAASLFAVAGEKGIEARFGVEPVVRTEIGRERLATEVLVFDEAPRGTVTVVVPDSAGGAEHRVDVLESSSEQFAARLRKVAKERRKWARREGVSCYRVYDADLPDYAVAIDVYPGAGEASGNLYLHIAEYAAPSSIDPGKAQRRYDDVLALAPVVLGVRPDHVFSKVRRRDKGGGQYREARRRSYVTQVQEDGYIFEVDLAGYLDTGLFLDHRLTRELVGAKAKGKRFLNLFAYTGTASVHAAGGGAQSTTTVDLSQTYLDWAARNMAANGFAGDTHTFERGDTMAWITEARRAGRRFDLVFVDPPTFSNSKAMGKRTWDVQRDHVELLIGVSRLLSEEGEVIFSCNLRTFKPDEEALAKYGVVLEDITAQTIPHDFERNPRIHKCYLARRS
>NC_015738.1|WP_151197440.1|1385763_1386477_-|YitT-family-protein
MATTKTIVMRACLLSVGILIMSAGIALITKTYLGTSPISSFGYVLSIAFPQISYGVFMTAWNIVLLLGQVVILRRNFRASALLQLPISVLFSIGLDGFSYLFSFVRPETYPGLLVMLFCGIAMLAFGVSCTVVANIVMSSGEAFVWAITSTTGWNFGHTKIGFDLFSVALAAVASWFLLGSIQGIREGTLAAAIFTGLFANVFIRLMGGAREPLPKRSSSDQKHDTNQELSQERLAK
>NC_015738.1|WP_013979674.1|1387044_1387560_-|hypothetical-protein
MNDTIRNLSKDQLIDLVEIYAKNLVALDGTWFQSIEHDEGMDEALHHDREAWRRFSVSEARRIKKFLDLEEHPGLEGLAHALALRCQSASNVDEIILENDAVICRVVDCRVQNARERKGMGFHPCKSVGIIEYSVFAANIDDRIETECLSCYPEITDTTCNCAWKFTLKAE
>NC_015738.1|WP_013979675.1|1387711_1388758_+|tryptophan--tRNA-ligase
MSIDSFEASKKRSDEIRADLPVHPEKYTMLTGDRPTGRLHLGHYFGTIRERVALQDLGITTRIIIADYQVITDRDTTEHIQDNVFNMVVDYLACGIDPAKTIIFTHSAVPALNQLMLPFLSLVTESELMRNPTVKSEMEASGHALTGLLLTYPVHQACDILFCKGNIVPVGKDQLPHIEQTRLIARRFNERYGHVFPEPEGVLNDAVEIPGLDGRKMSKSYGNAIALSLTAEETAKLIKKSKTDPERMITYDKENRPGVSALLTTAALCTGRTEVEIAEEIGEAGAGALKKYVTESVNGYLAPIRERRVELAQDADYIWDVLHEGNRRANEIANATLDEVRECMHMVY
>NC_015738.1|WP_013979676.1|1389031_1389502_+|ribosome-maturation-factor-RimP
MLSKKEQQLLDALTPRAEAEGVEVVTVQVVGARKAPTIRVFIDTPDGVSFDELSSAQAWINDIMDELDPFPGAYMLEVSSPGIDRPLRTIEHFARFVGETAVVKTSEPCEGRSSWTGTIASAQNGIVELEVDGSSVQIPLTTIKRANLKGTIDFGS

Crispr_ID: NC_015738_4

• CRISPR_ID: NC_015738_4
• CRISPR_location: 1618228-1618323
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: csa3

Consensus repeat of NC_015738_4

Consensus_repeat	Method
ATGTTTCACGTGAAACATTTGTA	CRISPRCasFinder

spacers of NC_015738_4

>4.1|1618251|50|NC_015738|CRISPRCasFinder
CGCTATACAATCTTCCTCTAAGCTTTTGGCATAAGAAAAGGCCCCAAGTG

CRISPR arrays and Neighbor proteins around NC_015738_4

CRISPR arrays

The CRISPR arrays of NC_015738_4

>merge|NC_015738|4|1618228-1618323|CRISPRCasFinder
ATGTTTCACGTGAAACATTTGTACGCTATACAATCTTCCTCTAAGCTTTTGGCATAAGAAAAGGCCCCAAGTGATGTTTCACGTGAAACATTTGTA

>NC_015738|4|4|1618228-1618323|CRISPRCasFinder
ATGTTTCACGTGAAACATTTGTA	CGCTATACAATCTTCCTCTAAGCTTTTGGCATAAGAAAAGGCCCCAAGTG
ATGTTTCACGTGAAACATTTGTA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015738.1|WP_013979894.1|1622276_1624205_+|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl|CDD|319847
NC_015738.1|WP_013979884.1|1611694_1612822_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|273466
NC_015738.1|WP_013979897.1|1626041_1627151_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|224919
NC_015738.1|WP_013979896.1|1625574_1625973_+|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013979888.1|1617157_1617907_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379530
NC_015738.1|WP_151197445.1|1618416_1619367_-|EamA-family-transporter	unknown	unknown	gnl|CDD|307170
NC_015738.1|WP_013979895.1|1624486_1625413_+|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|378820
NC_015738.1|WP_013979898.1|1627229_1628621_-|uracil-xanthine-permease	unknown	unknown	gnl|CDD|225142
NC_015738.1|WP_013979883.1|1610187_1611513_-|DNA-polymerase-IV	unknown	unknown	gnl|CDD|176459
NC_015738.1|WP_013979879.1|1604434_1605460_-|RluA-family-pseudouridine-synthase	unknown	unknown	gnl|CDD|223638
NC_015738.1|WP_013979891.1|1620607_1621117_-|flavin-reductase-family-protein	unknown	unknown	gnl|CDD|224766
NC_015738.1|WP_013979892.1|1621288_1621669_+|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl|CDD|238042
NC_015738.1|WP_013979893.1|1621753_1621972_+|cation-transporter	unknown	unknown	gnl|CDD|236827
NC_015738.1|WP_013979885.1|1612866_1615515_-|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl|CDD|319783
NC_015738.1|WP_013979887.1|1616436_1617126_+|SOS-response-associated-peptidase-family-protein	unknown	unknown	gnl|CDD|376837
NC_015738.1|WP_013979881.1|1606067_1608920_-|isoleucine--tRNA-ligase	unknown	unknown	gnl|CDD|235588
NC_015738.1|WP_041691006.1|1615775_1616093_-|metal-sensing-transcriptional-repressor	unknown	unknown	gnl|CDD|197391
NC_015738.1|WP_013979890.1|1619354_1620332_-|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NC_015738.1|WP_083833060.1|1605456_1606122_-|signal-peptidase-II	unknown	unknown	gnl|CDD|376504
NC_015738.1|WP_013979882.1|1609145_1610030_+|DegV-family-protein	unknown	unknown	gnl|CDD|273257

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015738.1|WP_013979892.1|1621288_1621669_+|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	2.2e-17	58.3	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015738.1|WP_013979894.1|1622276_1624205_+|cadmium-translocating-P-type-ATPase	gnl|CDD|319847	cd07548, P-type_ATPase-Cd_Zn_Co_like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis CadA which appears to transport cadmium, zinc and cobalt but not copper out of the cell. Bacillus subtilis CadA/YvgW appears to transport cadmium, zinc and cobalt but not copper, out of the cell. Functions in metal ion resistance and cellular metal ion homeostasis. CadA/YvgW is also important for sporulation in B. subtilis, the significant specific expression of the cadA/yvgW gene during the late stage of sporulation, is controlled by forespore-specific sigma factor, sigma G, and mother cell-specific sigma factor, sigma E. This subfamily also includes Helicobacter pylori CadA an essential resistance pump with ion specificity towards Cd(2+), Zn(2+) and Co(2+), and Zn-transporting ATPase, ZiaA(N) in Synechocystis PCC 6803. Transcription of ziaA is induced by Zn under the control of the Zn responsive repressor ZiaR. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_015738.1|WP_013979884.1|1611694_1612822_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|273466	TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see pfamAM:pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	5.5403e-57
NC_015738.1|WP_013979897.1|1626041_1627151_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	2.55664e-84
NC_015738.1|WP_013979888.1|1617157_1617907_+|GNAT-family-N-acetyltransferase	gnl|CDD|379530	pfam14268, YoaP, YoaP-like. The YoaP-like domain is found at the C-terminus of the B. subtilis YoaP protein. It is found in bacteria and archaea, and is approximately 40 amino acids in length. The family is found in association with pfam00583. There is a single completely conserved residue A that may be functionally important.	3.174e-13
NC_015738.1|WP_151197445.1|1618416_1619367_-|EamA-family-transporter	gnl|CDD|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	5.71196e-13
NC_015738.1|WP_013979895.1|1624486_1625413_+|alpha/beta-fold-hydrolase	gnl|CDD|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	3.35688e-37
NC_015738.1|WP_013979898.1|1627229_1628621_-|uracil-xanthine-permease	gnl|CDD|225142	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism].	5.41577e-110
NC_015738.1|WP_013979883.1|1610187_1611513_-|DNA-polymerase-IV	gnl|CDD|176459	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases.	1.22389e-150
NC_015738.1|WP_013979879.1|1604434_1605460_-|RluA-family-pseudouridine-synthase	gnl|CDD|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	8.28555e-107
NC_015738.1|WP_013979891.1|1620607_1621117_-|flavin-reductase-family-protein	gnl|CDD|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	9.39297e-20
NC_015738.1|WP_013979892.1|1621288_1621669_+|winged-helix-turn-helix-transcriptional-regulator	gnl|CDD|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.3219e-18
NC_015738.1|WP_013979893.1|1621753_1621972_+|cation-transporter	gnl|CDD|236827	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional.	3.63846e-13
NC_015738.1|WP_013979885.1|1612866_1615515_-|heavy-metal-translocating-P-type-ATPase	gnl|CDD|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_015738.1|WP_013979887.1|1616436_1617126_+|SOS-response-associated-peptidase-family-protein	gnl|CDD|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	1.66366e-25
NC_015738.1|WP_013979881.1|1606067_1608920_-|isoleucine--tRNA-ligase	gnl|CDD|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_015738.1|WP_041691006.1|1615775_1616093_-|metal-sensing-transcriptional-repressor	gnl|CDD|197391	cd10156, FpFrmR-Cterm-like_DUF156, C-terminal domain of Faecalibacterium prausnitzii A2-165 FrmR , and related domains; this domain family was previously known as part of DUF156. This domain family contains the C-terminal domain of the functionally uncharacterized protein Faecalibacterium prausnitzii A2-165 FrmR, and related domains. This family is part of a larger superfamily that contains various transcriptional regulators that respond to different stressors such as Cu(I), Ni(I), sulfite, and formaldehyde, and includes CsoRs (copper-sensitive operon repressors). CsoRs form homotetramers (dimer of dimers). In Mycobacterium tuberculosis CsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily, including this family, and a conserved Tyr and a Glu residue that facilitate allosteric regulation of DNA binding for CsoRs are also conserved.	3.41225e-39
NC_015738.1|WP_013979890.1|1619354_1620332_-|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.56205e-30
NC_015738.1|WP_083833060.1|1605456_1606122_-|signal-peptidase-II	gnl|CDD|376504	pfam01252, Peptidase_A8, Signal peptidase (SPase) II.	3.36594e-39
NC_015738.1|WP_013979882.1|1609145_1610030_+|DegV-family-protein	gnl|CDD|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	6.28942e-98

Protein sequences

>NC_015738.1|WP_013979888.1|1617157_1617907_+|GNAT-family-N-acetyltransferase
MEPDFINLTADNLAQEHLCCIIRTKKQHPGVEAKRQWLADRLGEGHVFRKLDVKGQVFIEYAPLETAWVPLVGENYIYLYCLWVVGEFRGKGYAKNLMDYCIADAKAQGKSGICMLGSTKQKSWLSDQSFAKRYGFEVVDTTDYGYDLLALSFDGSVPAFAPNAKQGQIERSELVVYYDLQCPYIKGSIEMVRRHCDENDIPVSLICVGTLQKAKELPCVFNNYAVFYKGVFQTVNLLDLATLKRILKK
>NC_015738.1|WP_013979887.1|1616436_1617126_+|SOS-response-associated-peptidase-family-protein
MCKRFIVVERTEVARIAAEIAEDLAAHAGELGTLDPLASFRPFLSSPVPDAPGTQREVFPQAVVPLIAPTGLEAQLALADMIWGFEVSWKRGPVFNTRIETALSNPECLWAESFARRRCIVPAWAFYESHATETVCSLRSGKPVKRQYAFERRDHAPLLLAAIHDHGRFSLVTTEPNAAVSPVHDRMPLVLNVYEATPWLCGDYRRLLDRSSVKLSATPEDLYTADTLY
>NC_015738.1|WP_041691006.1|1615775_1616093_-|metal-sensing-transcriptional-repressor
MTAEATEKAACCHHKDTPRSAELQADLQKRLNRAIGQLNGVKAMIEDNRYCGDVLTQLAAAESAIHRVSALMLQDHLETCVVEQIQQGNVEVVDEVMQLLQKFSR
>NC_015738.1|WP_013979885.1|1612866_1615515_-|heavy-metal-translocating-P-type-ATPase
MKQTFDITGMTCAACSARVEKATRGVDGVKSVAVNLLKNSMEVETDGSPTTIAAIESAVDKAGYGAFARPLKDSGAAAGGSSTASRAAQARPVADAAAEAKRVRMRLIVSTVFTVPLFYISMGHMFGWPLPSFLTGDANIMPFALTQFLLLLPVIFVNFKFFRVGFKTLVHGAPNMDSLIALGSTASTVYGVYALYKIGYALGAGDGASAHMAAMDLYFESAAMILTLITLGKYFEARAKGKTTDAIAKLMDLAPKEATRVRDGQEERIPADDVRMGDILVVRAGEGVPVDGTVLEGSGTLDESVITGESVPVEKAPGDTVTGATVNRMGWFTMRADRVGDDTTLAGIIRLVDEATSTKAPIEKIADKISGVFVPAVIVIALGTFAAWMLGGSTLEVALSHAISVLVISCPCALGLATPTAIMVGTGRGAQNGILVKSAEALEVAHGIRTVVLDKTGTITQGTPSVTDVIAAFGVDNARLLEAAVSIEGRSEHPLARAICEYAREQKAYPLLVENFKQIPGEGVEALVDDRLTFAGNLRMMEARGIATSEVAATAQRLADEGKTPLFFAQEGALLGIIAVADTVKPTSAAALHELSAMGIRTVMLTGDNERTAAAIQHEVGADEVIADVLPQGKEREIRRLASEGAVAMVGDGINDAPALARADVGIAIGAGTDIAIESADIVLMKSDLMDVPAAIQLSRATLRNIKQNLFWALFYNAICIPVAAGALSMWGVNLNPMIAAAAMSASSVCVVANALRLRGWKPKFTVPVLRQATAATDTPSAHAAPSASEGTTDALTSVDPILIDSADAPKQKEITMEKMLHVEGMMCQHCVAHVKKALEGIEGVEEAVVDLDAGTATAKMTQEVPDDVLKAAIVEAGYEVK
>NC_015738.1|WP_013979884.1|1611694_1612822_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MAQETGTLFGVRDCVTALPEQLLSPPYELRTEMNWIDFSGTANPLGTPPSFLQAMKNALEAGELNYTPDREAHALRSVLARRFGLPVNSFLVGSTVCDMIRAVAQTYQPCTVGVTVPGPAEYALAAGNAGHRVVDIASPGGFVLPDPATAERNGIFFDAAVLANPSYPTSRLLPEPTLLAYLQACTWVVVDERSIELTLGGQSMIPLVHEYRNLVVVRSLCEPFAMPGIPISYCVAHPDTIAQITRFYDSSGVPMFAEVLGELTLAEKEHLERTRDFLDTEIPWMQCMLNLIPGISIFPAEANYVMCTFDHSPDMTLGVSSTEELASRLQLAGFLIRKLEGTPGLDDGRYFCVAVRTREDNEKLITALREIIVGR
>NC_015738.1|WP_013979883.1|1610187_1611513_-|DNA-polymerase-IV
MIDDSQQTNAFKAADDGPALPLEPWEGPAILLVDLDAFFASVEQLDHPAWRGKPVIVGGDPDKHGVVSTASYEARPFGVRSAMPSSTAHKLCPHAIWTHGHFDRYREMSNKIMDILHAETPHVQQVSIDEAFLDVTPTTVNREHPVYVAQRIQRRVEELGVTCSIGVGTSKTIAKIASDMDKPRGLTVVYPGGERDFLAPLPVRTMSGIGAAAEEKLRSRGIRTLGQLADADLNMLVRVFGKNGRVMHLRANGGDDAPVEDDDTVKSVSNEMTFAVDLTERTDVEAAIATMAAKVGRRLRRKGLAGRTISLRVKFDDLSVRSVQRQLSTPSNDELAYTPLLYQMVDEVWRPGMPLRLIGVGMSGFDDTGAVQEALFDVTEVVPTDDDVEPVVKDDRKRRGLIEATDLVKNRFGETAVRFGHELRNDENTTGSAAKNPADYK
>NC_015738.1|WP_013979882.1|1609145_1610030_+|DegV-family-protein
MPMNFEIITDSSSNLIEDMIDDFELHILPLTFMVEGEETVYQSYLKGEHTDLAQFYTMMRDGKVIKTSLPNLAESEALMRGLLEQGRDILYVGFSSGLSGTFEATELLMRDLAREFPERKMYAVDTLAASGGEGLLVWHAVQRARGGASIEEVRDWLEENKLHLAHWFTVDDLMFLFRGGRVSKTTAWAGTMLNIKPVMHVDDEGHLIPLEKVRGRKKSLNALVDHMEKSAIAPIDEQMVFITHGDCLEEAEYVAEQVKSRFGVKEVVINYVDPVIGAHSGPGTMALFFLADQR
>NC_015738.1|WP_013979881.1|1606067_1608920_-|isoleucine--tRNA-ligase
MGNTYKETMNLPKTDFAMRANLPENEPKRLAKWEEERIYERVLEKNKDGKPFVLHDGPPYANGPIHIGHAFNKILKDFVNKSHAQRGYFTPYVPGWDCHGQPIEHMVEKTLGPEKMAKIDQPTLRRLCREWAEKYIDIQRDGFKRLGVNGDWEHPYLTFTPNYEAGNVEVFKKMYLDGSVYRGRKPIHWCKRCHTALAEAEIEYSDETSPSIFVKFKLDTVPGMFETAGVTGDAYILIWTTTPWTLPANTAVSLAPDADYVMVQADGSNMIMARELVEQVAEIAGWEDWSLVEEATGTLVSLKGRELTGLTYTCPVRQDLKGTIIYGDHVTLDTGTGCVHTAPGHGQDDYLVALEFDVPLLMPVDDNGCFTDEAGPFSGLDVDEANPVIINWLRERGTLVAEKSILHSYPHCWRCHEPVIFRATDQWFVSMDKNSLREDALSAIENDVEWIPAWAANRIGSMVADRPDWCISRQRSWGVPIPVFKCAKCGSTVANEATFDAVIDLFYREGADAWFTRKPSEYLPRGTKCEVCGSMELVPEKDILDVWWESGVSHTSVLRHREAEGLHFPAEMYLEGSDQHRGWFQSSLLTSMGAYGVPPYKSVMHCGFTVDGEGRKMSKSLGNGVDPAEVMEKSGADVLRLWVASVDYSQDVSISDEILQRTSEAYRRIRNTFRFLLGSLDDFDDATDMVEDFDELEPMDQWMLVRLSHLLADVEAAYNDYKFHLVYRAVYDYIVNDLSAVYMDATKDRLYSEAPDSPRRRAVQTVLMDILEVLVRVLAPVLSFTTDEVWEHYPQAIREREGRPTNVQLAGWPTLRDFVPTLPERAVADKVAEDFGVVLGVREVVTKALEDARAEKTVNKSQEAAVVVCAPRSVLEVTEKFDQEVFEELFIVASVAFEEADELAVSIEPAAGEKCPRCWNYRELGGNANHPDVCERCGDVLDALGFSEGE
>NC_015738.1|WP_083833060.1|1605456_1606122_-|signal-peptidase-II
MRTLRRRAGCAWLLGRGVGPLDGRTRVTAAIGAEEASRQEKRTSRSRNLAILLAVGLVWFGLDMLTKSWINGSYEVGQTVVGPILGLVQFTLVHNTGMAWGMFGDSTTALGVMSLVVCCVLIVYLLALSPRASVAEAVGIALVVAGGLGNALDRFTLGYVVDFIEPVFIDFPVFNVADIGVTCGFVLFLGGLLLRERREAARERALMNGDASQDSQGPDLP
>NC_015738.1|WP_013979879.1|1604434_1605460_-|RluA-family-pseudouridine-synthase
MSRLLSHTVAAEDAGQRLDTLLATRGLYPSRSAAARAVDEGAVYVNGAAVPKKQTLCAGDTIVYEVEDTMAPGPLSGQAIDLDIRFEDDHLIVLSKQAGLVCHPSVDHDDGTLVNALIYHCGADRLCNVQGQDDRLGIVHRLDRDTTGLMLAAKDDETGYALMADIRDRAVDRRYLALVHGVIAHDTGMIDAPIARAVNERTRMAVREAPSAREAITTFRVLERFDHEGDDNGYTLVDCKLFTGRTHQIRVHMEYAKHPLVGDPVYTVHAPKTSSADLGLTRQFLHSFQLAFTHPVTGEELRFYDGLPEDLQSVLDSLSPRSQGRTEAGEEVFAQLREARG
>NC_015738.1|WP_151197445.1|1618416_1619367_-|EamA-family-transporter
MPLMSARSTVDVQPAVRGHVFALLTVLVWAVTFVSTKVLLVHLTPIEILFFRFIIGFVALALLRPRRLHLSGFAQEKWFIFAGITGVTLYYLLENIALTFTTASIVGVVVAAAPLFTGLISAIALKERLRAPFFVGFVVAMAGVCLVSFAGGVAASGGVEGTAEIIGGLGEAGLLGVGLALAAAATWAVYSVVTKKISTFGYDSILVTRRTFAWGLLFMVPTLPFLGFSPDWASLAAPEMWGNLVFLGLGASALCFVTWNLAVKELGPVKTSLYIYLVPALTVLASAAILGDPLTPPVIIGVLLTIGGLLLSERGK
>NC_015738.1|WP_013979890.1|1619354_1620332_-|AraC-family-transcriptional-regulator
METLEEWLARPEVAGARRADPNKEVESRHVVALSSCPGVELITLEGVVQPFPLHFHDFWTIGEIVRGHRRTTCRGEIRVLGPGDLVLFGPGEVHGCEPVNNEPFFYRSIILPDELFSSLGLNASRRFDCFTVQDDRLKNVLEKIYTLAGDSLSDPLEQEEGLAALVHHAMHYCPTEESKNGDGANTSNKNGGEVNTSRSKKASDEPAARGRVSSDTAGAVDRARMLLETHAASGVTLAELSEAAGLSRYHLVRVFAAHTGLTPHRYLQTLRANRARNLLAQGVEPAEAAVHAGFSDQSHMTRVFKALFGVTPARYRATAGEGCRL
>NC_015738.1|WP_013979891.1|1620607_1621117_-|flavin-reductase-family-protein
MAFREVDIESLQFNPFEKIGKEWMLITAGDEQKSNTMTASWGGLGILWGKNVATVYIRPQRYTKEFVDANDLFTVSFLSEEYRGALAFCGKVSGRDVANKIAEAGLTPHYMDGTTAIAEADLVLVCRKLYADTMPLDNFIAKENDERWYPEHDYHTMYIAEIVHMLVRE
>NC_015738.1|WP_013979892.1|1621288_1621669_+|winged-helix-turn-helix-transcriptional-regulator
MTEEIQDNASTHDDGCSCGSAEHAAPGQSTESMPDEELLYDLADLFKTFGDTTRIKILYALMGTELRVADIAELIGATQSAVSHQLRTLKQARLVKFQRDGKNVIYSLADDHVYTMLAQGMTHICE
>NC_015738.1|WP_013979893.1|1621753_1621972_+|cation-transporter
MRKAFKLQDLDCANCAAKMENGIKNIEGVKSATVSFMTQKLVLEADDDRFDEIVEEAARICKKIEPDCVIVR
>NC_015738.1|WP_013979894.1|1622276_1624205_+|cadmium-translocating-P-type-ATPase
MNKKQKRTRNRILIAIVLFVVAYIIAELMPLATWLGTETAALWAEFALFLIPYLIAGYDVLLRAAKNIGHGQVFDENFLMSVATIGAFALVLFPDSDPHMAEGAAVMLFYQVGELFQSYAVGKSRASIAEMMDIAPDFANVERDGELVQVDPYEVAVGDEIIVKPGERVPIDGIVLAGSSQLDTAALTGESMPREVREGDEIISGCVNLTGLITVRTTKPFGESTVSRILELVENAAEKKARTENFITRFARYYTPAVVGIAVLLAVIPPLLLGQSWSDWVQRGLIFLVVSCPCALVISVPLSFFGGIGGASRLGILVKGSNYLETLAHTETVVFDKTGTLTDGSFNVVAVHAEADIDADRLLSVAAHAEAFSNHPIALSVQKAYAGPIDKQRIADVEEQSGHGVRATVDERVVYVGNDKLMRECGVDYHDCELTGTILHVSLDGAYVGHIVIADVVKPDATAAIEALRAAGVKKTVMLTGDRTDVAAAVADELGLDEFRAQLLPQDKVAEVEKLLGETHAHGTGKGKLAFVGDGINDAPVLTRADIGIAMGAMGSDAAIEAADVVLMDDKPSNIAKAIRIARTTMRIVWQNIVFALGVKLLVLVLAAVGIANMWLAVFADVGVAVIAILNAMRAMNVRNMK
>NC_015738.1|WP_013979895.1|1624486_1625413_+|alpha/beta-fold-hydrolase
MLHEVSFPSYNKRDEVQGWIYVPACEPMGIVQLVHGFGEHSRRYLHMIVALMDAGFIVAADDHVGHGKTAIANDTWGDWGDAGCHTMMEDEHSLMELTREKYPDLPYFMFGHSMGSMIARDFAATYGDELTGLIICGTPGIFRMTDEVAPKLQAAIDEGKAHESDPAFVGELMGWMFARCEEGAQLGNEWICHDPYVQKDHAEDPFDAFTHPTHNISLLNFIEMMKVIEGPEWAAKVPADLPILNIAGDQDPVGEWGAGVYQVANWLVDTGHDVITRLYSGYRHEIHNYDDLKDEVENTIVDFLYLNV
>NC_015738.1|WP_013979896.1|1625574_1625973_+|hypothetical-protein
MSTKRHTSTSHPHADFPARGPVVIGRWALVAAGVVAILFGFMASSALVRGIAFAGLTFLLANALFQHMPLSRACIMAGVMALIFGAGVSLYRLFTWHMGLDSWFPDALGTLIGAAIAYPVLKRINHAIDGTS
>NC_015738.1|WP_013979897.1|1626041_1627151_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MRRFNNDYNCGAHPRILQALATTNAERYPGYGLDAWCERGAQAIRDYAQAPDAAVHFVVGGTQANFLVIAAALRPYESVLSADTGHINGHETGAVEHVGHKIEALPSTDGKITAAQVEAAARAFETSTVPEHITQPKMVYLSFSTEFGTLYTKHELEDMSSVCREHGLFLFIDGARMAYGLAAPEADVSLADIARVADAFTVGGTKCGALFGEAVVLTNPALHEGFRSNMKQNGAMLAKGWLLGLQFATLFESSAEAGVSAEGSANAPDEPLYLAIARRADDQALRIKTAFEQARVPLFIDSPTNQQFVIMADEVLEDLAQSYVFEYEQRIDEAHSCVRFCTSWSTRDEDVDALVADVTALAQAGRFDA
>NC_015738.1|WP_013979898.1|1627229_1628621_-|uracil-xanthine-permease
MSDRPTPTMGAKDSPDDIYDARKLGAPKMAVFGLQHMFAMFGATILVPTLTGLSVSATLLFAGLGTLLFHLISKGKVPAFLGSSFAFIAGYAAIAPNGEPELLPYACLGVACAGLLYLVLSALFKVFGPSRVMRFFPPVVTGPIVIAIGLILASSAISNASTNWLVAVVAIAIIVIANIWGKGMIKIVPILLGVIGAYIVAALLGEVDFAAVAEAPWIGLPVIWDDTVFSLFGANFDAGLAITAIITIMPLALASMIEHIGDMSAISSTCNRNYIAEPGLHRTLLGDGLATIAASLFGAPANTTYGENTGVLALTRVFDPRVIRIAALFAIVFSFCPKFAAVIAVMPACVIGGVSLVLYGMISAVGIRNLVENHVDFLKSRNVLITALILVLSLGIAYSTAGAIAIPVGGIVISLSGLAVGSVVGIVMNVILPGQEEAAAARREPDEVPDVPMPLEDIRPLNG

Crispr_ID: NC_015738_5

• CRISPR_ID: NC_015738_5
• CRISPR_location: 2085666-2087297
• CRISPR_type: TypeI
• Repeat_type: NA
• Spacer_info: 24 spacers
• Cas_protein_info: cas2,cas7,cas8c,cas5,cas3,cas3HD

Consensus repeat of NC_015738_5

Consensus_repeat	Method
GTTTCAACCCGCGCGTCCGCGAGG	CRT
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	CRISPRCasFinder
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	PILER-CR

spacers of NC_015738_5

>5.1|2085690|46|NC_015738|CRT
GGGAGTGACTTGAATCGGCGTACACGTAGACCAGGCCGGTAAAAAT
>5.2|2085760|44|NC_015738|CRT
GGACGCGACGTGCGCCAGTGCCCGTCGGCGTCGGTGGCCATGGT
>5.3|2085828|43|NC_015738|CRT
AACGCGACCACTCCCAAGTTCCTGAAACGCCGAAGGCCCCCTG
>5.4|2085895|43|NC_015738|CRT
GACGCGACCCCTGTAAGGTGCTTTCGTCTTCTACGATTGCAGG
>5.5|2085962|43|NC_015738|CRT
GACGCGACAACATCGAGAAGGTAGTCCAAGAAATTATCCACAT
>5.6|2086029|42|NC_015738|CRT
AACGCGACGCACCGCAGCACGCAAACTTGCACGCAGCGATAA
>5.7|2086095|42|NC_015738|CRT
GACGCGACTGCGGCCATTACTTGTCCTCCTTTCTTGGTTGGC
>5.8|2086161|42|NC_015738|CRT
GACGCGACGATCCCAAGCGGCTTTGTCCTCGGCGCGATCGAC
>5.9|2086227|43|NC_015738|CRT
GACGCGACCAATCTAGCCCATCCACAACAGCCATTGCGTCGGT
>5.10|2086294|41|NC_015738|CRT
GACGCGACAACGATGTGCCGACCGAGCTTTTGCCGCTCGTT
>5.11|2086359|43|NC_015738|CRT
GACGCGACACACCACCGACCTGACGGCGGCGTGCCTGCTCATG
>5.12|2086426|43|NC_015738|CRT
GACGCGACCTAACGATTCCGCTTATCGCGCTTCGTAAAGTACC
>5.13|2086493|42|NC_015738|CRT
GACGCGACAGCGGATGGCGCGCAGAACATCCGAGCCGGTCGT
>5.14|2086559|42|NC_015738|CRT
GACGCGACGGCGCTTGAGAATGTTTTCGAGCCGGACGTGCTT
>5.15|2086625|44|NC_015738|CRT
GACGCGACCGACTGGGCAAAACGGCCGAGCGCCGTGCCTTTGCT
>5.16|2086693|42|NC_015738|CRT
GACGCGACACATCAAAAACGATAACGGGACACCCAAGCCCAT
>5.17|2086759|43|NC_015738|CRT
GACGCGACGAGATCGGCCGCGAGAACGCCGCCAAACAGCGCAA
>5.18|2086826|43|NC_015738|CRT
GACGCGACCGCGGGATACCCGTTAGGTAATCCTCGTTGTCGTC
>5.19|2086893|42|NC_015738|CRT
GACGCGACAATGATCCATTTCGTAAGGCCGGGAGAGTATGTG
>5.20|2086959|42|NC_015738|CRT
GACGCGACCGCGCAAGAAGCGTGGGATTCTGTATCCCCGGTC
>5.21|2087025|44|NC_015738|CRT
GACGTGACCACGGTGGACGTCGGCACCGTCGACGATCCCTCGGC
>5.22|2087093|42|NC_015738|CRT
GACGCGACTGGCTAACAAGGCTGGCGTTTCTGCGGACGAGAT
>5.23|2087159|42|NC_015738|CRT
GACGCGACTGTGCGTTTCGTCGTCCTGGTTCACGTCGGGGGA
>5.24|2087225|41|NC_015738|CRT
GACGTGACGAACCACCTAATGAAAGAAGCGGCGCTTGGGAG
>5.25|2085836|35|NC_015738|CRISPRCasFinder
CACTCCCAAGTTCCTGAAACGCCGAAGGCCCCCTG
>5.26|2085903|35|NC_015738|CRISPRCasFinder
CCCTGTAAGGTGCTTTCGTCTTCTACGATTGCAGG
>5.27|2085970|35|NC_015738|CRISPRCasFinder
AACATCGAGAAGGTAGTCCAAGAAATTATCCACAT
>5.28|2086037|34|NC_015738|CRISPRCasFinder
GCACCGCAGCACGCAAACTTGCACGCAGCGATAA
>5.29|2086103|34|NC_015738|CRISPRCasFinder,PILER-CR
TGCGGCCATTACTTGTCCTCCTTTCTTGGTTGGC
>5.30|2086169|34|NC_015738|CRISPRCasFinder,PILER-CR
GATCCCAAGCGGCTTTGTCCTCGGCGCGATCGAC
>5.31|2086235|35|NC_015738|CRISPRCasFinder,PILER-CR
CAATCTAGCCCATCCACAACAGCCATTGCGTCGGT
>5.32|2086302|33|NC_015738|CRISPRCasFinder,PILER-CR
AACGATGTGCCGACCGAGCTTTTGCCGCTCGTT
>5.33|2086367|35|NC_015738|CRISPRCasFinder,PILER-CR
ACACCACCGACCTGACGGCGGCGTGCCTGCTCATG
>5.34|2086434|35|NC_015738|CRISPRCasFinder,PILER-CR
CTAACGATTCCGCTTATCGCGCTTCGTAAAGTACC
>5.35|2086501|34|NC_015738|CRISPRCasFinder,PILER-CR
AGCGGATGGCGCGCAGAACATCCGAGCCGGTCGT
>5.36|2086567|34|NC_015738|CRISPRCasFinder,PILER-CR
GGCGCTTGAGAATGTTTTCGAGCCGGACGTGCTT
>5.37|2086633|36|NC_015738|CRISPRCasFinder,PILER-CR
CGACTGGGCAAAACGGCCGAGCGCCGTGCCTTTGCT
>5.38|2086701|34|NC_015738|CRISPRCasFinder,PILER-CR
ACATCAAAAACGATAACGGGACACCCAAGCCCAT
>5.39|2086767|35|NC_015738|CRISPRCasFinder,PILER-CR
GAGATCGGCCGCGAGAACGCCGCCAAACAGCGCAA
>5.40|2086834|35|NC_015738|CRISPRCasFinder,PILER-CR
CGCGGGATACCCGTTAGGTAATCCTCGTTGTCGTC
>5.41|2086901|34|NC_015738|CRISPRCasFinder,PILER-CR
AATGATCCATTTCGTAAGGCCGGGAGAGTATGTG
>5.42|2086967|34|NC_015738|CRISPRCasFinder,PILER-CR
CGCGCAAGAAGCGTGGGATTCTGTATCCCCGGTC
>5.43|2087033|36|NC_015738|CRISPRCasFinder,PILER-CR
CACGGTGGACGTCGGCACCGTCGACGATCCCTCGGC
>5.44|2087101|34|NC_015738|CRISPRCasFinder,PILER-CR
TGGCTAACAAGGCTGGCGTTTCTGCGGACGAGAT
>5.45|2087167|34|NC_015738|CRISPRCasFinder,PILER-CR
TGTGCGTTTCGTCGTCCTGGTTCACGTCGGGGGA
>5.46|2087233|33|NC_015738|CRISPRCasFinder
GAACCACCTAATGAAAGAAGCGGCGCTTGGGAG

CRISPR arrays and Neighbor proteins around NC_015738_5

CRISPR arrays

The CRISPR arrays of NC_015738_5

>merge|NC_015738|5|2085666-2087297|CRT,CRISPRCasFinder,PILER-CR
GTTTCAACCCGCACTCCCCGTGTGGGGAGTGACTTGAATCGGCGTACACGTAGACCAGGCCGGTAAAAATATTTCAACCCGCACTCCCCGCGAGGGACGCGACGTGCGCCAGTGCCCGTCGGCGTCGGTGGCCATGGTGTTTCAACCCGCGCGTCCGCGAGGAACGCGACCACTCCCAAGTTCCTGAAACGCCGAAGGCCCCCTGGTTTCAACCCGCGCGTCTGCGAGGGACGCGACCCCTGTAAGGTGCTTTCGTCTTCTACGATTGCAGGGTTTCAACCCGCGCGTCCACGAGAGACGCGACAACATCGAGAAGGTAGTCCAAGAAATTATCCACATGTTTCAACCCGCACGTCCGCAAGGAACGCGACGCACCGCAGCACGCAAACTTGCACGCAGCGATAAGTTTCAACCCGCGCGTCCGCGAGGGACGCGACTGCGGCCATTACTTGTCCTCCTTTCTTGGTTGGCGTTTCAGCCCGCGCGTCCGCGAGGGACGCGACGATCCCAAGCGGCTTTGTCCTCGGCGCGATCGACGTTTCAACCCGCGCGTCCGCGAGGGACGCGACCAATCTAGCCCATCCACAACAGCCATTGCGTCGGTGTTTCAACCCGCGCGTCCGCGAGGGACGCGACAACGATGTGCCGACCGAGCTTTTGCCGCTCGTTGTTTCAACCCGCGCGTCCACGAGGGACGCGACACACCACCGACCTGACGGCGGCGTGCCTGCTCATGGTTTCAACCCGCGCGTCCGCGAGGGACGCGACCTAACGATTCCGCTTATCGCGCTTCGTAAAGTACCGTTTCAACCCGCGCGTCCGCGAGGGACGCGACAGCGGATGGCGCGCAGAACATCCGAGCCGGTCGTGTTTCAACCCGCGCGTCCGCGAGGGACGCGACGGCGCTTGAGAATGTTTTCGAGCCGGACGTGCTTGTTTCAACCCGCGCGTCCGCGAGGGACGCGACCGACTGGGCAAAACGGCCGAGCGCCGTGCCTTTGCTGTTTCAACCCGCGCGTCCGCGAGGGACGCGACACATCAAAAACGATAACGGGACACCCAAGCCCATGTTTTAACCCGCGCGTCCGCGAGGGACGCGACGAGATCGGCCGCGAGAACGCCGCCAAACAGCGCAAGTTTCAACCCGCGCGTCCGCGAGGGACGCGACCGCGGGATACCCGTTAGGTAATCCTCGTTGTCGTCGTTTCAACCCGCGCGTCCGCGAGGGACGCGACAATGATCCATTTCGTAAGGCCGGGAGAGTATGTGGTTTCAACCCGCGCGTCCGCGAGGGACGCGACCGCGCAAGAAGCGTGGGATTCTGTATCCCCGGTCGTTTCAACCCGCGCGTCCGCGAGGGACGTGACCACGGTGGACGTCGGCACCGTCGACGATCCCTCGGCGTTTCAACCCGCGTGTCCGCGAGGGACGCGACTGGCTAACAAGGCTGGCGTTTCTGCGGACGAGATGTTTCAACCCGCGCGTCCGCGAGGGACGCGACTGTGCGTTTCGTCGTCCTGGTTCACGTCGGGGGAGTTTCAACCCGCGCGTCCGCGAGGGACGTGACGAACCACCTAATGAAAGAAGCGGCGCTTGGGAGGTTTCAACCCGCACGTCCGTAAGGGATGCGAC

>NC_015738|5|1|2085666-2087289|CRT
GTTTCAACCCGCACTCCCCGTGTG	GGGAGTGACTTGAATCGGCGTACACGTAGACCAGGCCGGTAAAAAT
ATTTCAACCCGCACTCCCCGCGAG	GGACGCGACGTGCGCCAGTGCCCGTCGGCGTCGGTGGCCATGGT
GTTTCAACCCGCGCGTCCGCGAGG	AACGCGACCACTCCCAAGTTCCTGAAACGCCGAAGGCCCCCTG
GTTTCAACCCGCGCGTCTGCGAGG	GACGCGACCCCTGTAAGGTGCTTTCGTCTTCTACGATTGCAGG
GTTTCAACCCGCGCGTCCACGAGA	GACGCGACAACATCGAGAAGGTAGTCCAAGAAATTATCCACAT
GTTTCAACCCGCACGTCCGCAAGG	AACGCGACGCACCGCAGCACGCAAACTTGCACGCAGCGATAA
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACTGCGGCCATTACTTGTCCTCCTTTCTTGGTTGGC
GTTTCAGCCCGCGCGTCCGCGAGG	GACGCGACGATCCCAAGCGGCTTTGTCCTCGGCGCGATCGAC
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACCAATCTAGCCCATCCACAACAGCCATTGCGTCGGT
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACAACGATGTGCCGACCGAGCTTTTGCCGCTCGTT
GTTTCAACCCGCGCGTCCACGAGG	GACGCGACACACCACCGACCTGACGGCGGCGTGCCTGCTCATG
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACCTAACGATTCCGCTTATCGCGCTTCGTAAAGTACC
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACAGCGGATGGCGCGCAGAACATCCGAGCCGGTCGT
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACGGCGCTTGAGAATGTTTTCGAGCCGGACGTGCTT
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACCGACTGGGCAAAACGGCCGAGCGCCGTGCCTTTGCT
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACACATCAAAAACGATAACGGGACACCCAAGCCCAT
GTTTTAACCCGCGCGTCCGCGAGG	GACGCGACGAGATCGGCCGCGAGAACGCCGCCAAACAGCGCAA
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACCGCGGGATACCCGTTAGGTAATCCTCGTTGTCGTC
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACAATGATCCATTTCGTAAGGCCGGGAGAGTATGTG
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACCGCGCAAGAAGCGTGGGATTCTGTATCCCCGGTC
GTTTCAACCCGCGCGTCCGCGAGG	GACGTGACCACGGTGGACGTCGGCACCGTCGACGATCCCTCGGC
GTTTCAACCCGCGTGTCCGCGAGG	GACGCGACTGGCTAACAAGGCTGGCGTTTCTGCGGACGAGAT
GTTTCAACCCGCGCGTCCGCGAGG	GACGCGACTGTGCGTTTCGTCGTCCTGGTTCACGTCGGGGGA
GTTTCAACCCGCGCGTCCGCGAGG	GACGTGACGAACCACCTAATGAAAGAAGCGGCGCTTGGGAG
GTTTCAACCCGCACGTCCGTAAGG

>NC_015738|5|5|2085804-2087297|CRISPRCasFinder
GTTTCAACCCGCGCGTCCGCGAGGAACGCGAC	CACTCCCAAGTTCCTGAAACGCCGAAGGCCCCCTG
GTTTCAACCCGCGCGTCTGCGAGGGACGCGAC	CCCTGTAAGGTGCTTTCGTCTTCTACGATTGCAGG
GTTTCAACCCGCGCGTCCACGAGAGACGCGAC	AACATCGAGAAGGTAGTCCAAGAAATTATCCACAT
GTTTCAACCCGCACGTCCGCAAGGAACGCGAC	GCACCGCAGCACGCAAACTTGCACGCAGCGATAA
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	TGCGGCCATTACTTGTCCTCCTTTCTTGGTTGGC
GTTTCAGCCCGCGCGTCCGCGAGGGACGCGAC	GATCCCAAGCGGCTTTGTCCTCGGCGCGATCGAC
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	CAATCTAGCCCATCCACAACAGCCATTGCGTCGGT
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	AACGATGTGCCGACCGAGCTTTTGCCGCTCGTT
GTTTCAACCCGCGCGTCCACGAGGGACGCGAC	ACACCACCGACCTGACGGCGGCGTGCCTGCTCATG
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	CTAACGATTCCGCTTATCGCGCTTCGTAAAGTACC
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	AGCGGATGGCGCGCAGAACATCCGAGCCGGTCGT
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	GGCGCTTGAGAATGTTTTCGAGCCGGACGTGCTT
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	CGACTGGGCAAAACGGCCGAGCGCCGTGCCTTTGCT
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	ACATCAAAAACGATAACGGGACACCCAAGCCCAT
GTTTTAACCCGCGCGTCCGCGAGGGACGCGAC	GAGATCGGCCGCGAGAACGCCGCCAAACAGCGCAA
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	CGCGGGATACCCGTTAGGTAATCCTCGTTGTCGTC
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	AATGATCCATTTCGTAAGGCCGGGAGAGTATGTG
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	CGCGCAAGAAGCGTGGGATTCTGTATCCCCGGTC
GTTTCAACCCGCGCGTCCGCGAGGGACGTGAC	CACGGTGGACGTCGGCACCGTCGACGATCCCTCGGC
GTTTCAACCCGCGTGTCCGCGAGGGACGCGAC	TGGCTAACAAGGCTGGCGTTTCTGCGGACGAGAT
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	TGTGCGTTTCGTCGTCCTGGTTCACGTCGGGGGA
GTTTCAACCCGCGCGTCCGCGAGGGACGTGAC	GAACCACCTAATGAAAGAAGCGGCGCTTGGGAG
GTTTCAACCCGCACGTCCGTAAGGGATGCGAC

>NC_015738|5|1|2086071-2087232|PILER-CR
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	TGCGGCCATTACTTGTCCTCCTTTCTTGGTTGGC
GTTTCAGCCCGCGCGTCCGCGAGGGACGCGAC	GATCCCAAGCGGCTTTGTCCTCGGCGCGATCGAC
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	CAATCTAGCCCATCCACAACAGCCATTGCGTCGGT
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	AACGATGTGCCGACCGAGCTTTTGCCGCTCGTT
GTTTCAACCCGCGCGTCCACGAGGGACGCGAC	ACACCACCGACCTGACGGCGGCGTGCCTGCTCATG
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	CTAACGATTCCGCTTATCGCGCTTCGTAAAGTACC
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	AGCGGATGGCGCGCAGAACATCCGAGCCGGTCGT
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	GGCGCTTGAGAATGTTTTCGAGCCGGACGTGCTT
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	CGACTGGGCAAAACGGCCGAGCGCCGTGCCTTTGCT
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	ACATCAAAAACGATAACGGGACACCCAAGCCCAT
GTTTTAACCCGCGCGTCCGCGAGGGACGCGAC	GAGATCGGCCGCGAGAACGCCGCCAAACAGCGCAA
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	CGCGGGATACCCGTTAGGTAATCCTCGTTGTCGTC
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	AATGATCCATTTCGTAAGGCCGGGAGAGTATGTG
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	CGCGCAAGAAGCGTGGGATTCTGTATCCCCGGTC
GTTTCAACCCGCGCGTCCGCGAGGGACGTGAC	CACGGTGGACGTCGGCACCGTCGACGATCCCTCGGC
GTTTCAACCCGCGTGTCCGCGAGGGACGCGAC	TGGCTAACAAGGCTGGCGTTTCTGCGGACGAGAT
GTTTCAACCCGCGCGTCCGCGAGGGACGCGAC	TGTGCGTTTCGTCGTCCTGGTTCACGTCGGGGGA
GTTTCAACCCGCGCGTCCGCGAGGGACGTGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015738.1|WP_041691084.1|2082038_2082320_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980293.1|2091384_2092737_-|putative-helicase	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NC_015738.1|WP_013980282.1|2079493_2080159_-|hypothetical-protein	unknown	unknown	gnl|CDD|273344
NC_015738.1|WP_013980284.1|2080699_2081881_-|M42-family-metallopeptidase	unknown	unknown	gnl|CDD|349906
NC_015738.1|WP_013980290.1|2087929_2088835_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
NC_015738.1|WP_013980292.1|2090667_2091333_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl|CDD|187534
NC_015738.1|WP_050978536.1|2082500_2084750_+|bifunctional-alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)/trehalose-phosphatase	unknown	unknown	gnl|CDD|184712
NC_015738.1|WP_013980298.1|2100173_2100755_+|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239646
NC_015738.1|WP_151197563.1|2077045_2078599_-|peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|377115
NC_015738.1|WP_041691085.1|2084746_2085100_-|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl|CDD|198403
NC_015738.1|WP_013980280.1|2076502_2076988_+|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl|CDD|237976
NC_015738.1|WP_013980288.1|2087448_2087739_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_015738.1|WP_013980279.1|2075497_2076394_-|glutamate-racemase	unknown	unknown	gnl|CDD|234851
NC_015738.1|WP_013980291.1|2088844_2090671_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl|CDD|378245
NC_015738.1|WP_013980283.1|2080218_2080686_-|SsrA-binding-protein-SmpB	unknown	unknown	gnl|CDD|376590
NC_015738.1|WP_013980295.1|2094790_2096440_-|FAD-binding-protein	unknown	unknown	gnl|CDD|273816
NC_015738.1|WP_013980278.1|2074844_2075441_-|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl|CDD|234648
NC_015738.1|WP_013980294.1|2092779_2093676_-|CRISPR-associated-endonuclease-Cas3''	cas3HD	cd09641_cas3HD_CAS-I	gnl|CDD|193608
NC_015738.1|WP_013980297.1|2098286_2100098_+|adenine-deaminase	unknown	unknown	gnl|CDD|223933
NC_015738.1|WP_158309938.1|2096912_2098103_+|DNA-binding-response-regulator	unknown	unknown	gnl|CDD|197715

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015738.1|WP_013980290.1|2087929_2088835_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	1.1e-117	386.9	0.2
NC_015738.1|WP_013980293.1|2091384_2092737_-|putative-helicase	cas3	COG1203_cas3_CAS-I	2e-38	126.8	0.1
NC_015738.1|WP_013980288.1|2087448_2087739_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	8.8e-28	91.1	0.0
NC_015738.1|WP_013980291.1|2088844_2090671_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	6.7e-146	481.7	0.0
NC_015738.1|WP_013980292.1|2090667_2091333_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	2.3e-80	263.8	0.0
NC_015738.1|WP_013980294.1|2092779_2093676_-|CRISPR-associated-endonuclease-Cas3''	cas3HD	cd09641_cas3HD_CAS-I	1.5e-33	111.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015738.1|WP_013980290.1|2087929_2088835_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.58903e-145
NC_015738.1|WP_013980293.1|2091384_2092737_-|putative-helicase	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	8.96241e-36
NC_015738.1|WP_013980282.1|2079493_2080159_-|hypothetical-protein	gnl|CDD|273344	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger. [Transport and binding proteins, Cations and iron carrying compounds].	9.20813e-05
NC_015738.1|WP_013980284.1|2080699_2081881_-|M42-family-metallopeptidase	gnl|CDD|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	5.99854e-129
NC_015738.1|WP_013980295.1|2094790_2096440_-|FAD-binding-protein	gnl|CDD|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	6.95356e-52
NC_015738.1|WP_013980292.1|2090667_2091333_-|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.94266e-100
NC_015738.1|WP_050978536.1|2082500_2084750_+|bifunctional-alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)/trehalose-phosphatase	gnl|CDD|184712	PRK14501, PRK14501, putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional.	0
NC_015738.1|WP_013980298.1|2100173_2100755_+|NUDIX-hydrolase	gnl|CDD|239646	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.33168e-40
NC_015738.1|WP_151197563.1|2077045_2078599_-|peptidoglycan-binding-domain-containing-protein	gnl|CDD|377115	pfam03734, YkuD, L,D-transpeptidase catalytic domain. This family of proteins are found in a range of bacteria. It has been shown that this domain can act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. This gives bacteria resistance to beta-lactam antibiotics that inhibit PBPs which usually carry out the cross-linking reaction. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue. Several members of this family contain peptidoglycan binding domains. The molecular structure of YkuD protein shows this domain has a novel tertiary fold consisting of a beta-sandwich with two mixed sheets, one containing five strands and the other, six strands. The two beta-sheets form a cradle capped by an alpha-helix. This family was formerly called the ErfK/YbiS/YcfS/YnhG family, but is now named after the first protein of known structure.	4.77553e-20
NC_015738.1|WP_041691085.1|2084746_2085100_-|GIY-YIG-nuclease-family-protein	gnl|CDD|198403	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1. This family contains a group of uncharacterized proteins found mainly in bacteria and several in dsDNA viruses. Although their function roles have not been recognized, these proteins show significant sequence similarities with the N-terminal GIY-YIG endonuclease domain of structure-specific endonuclease subunit SLX1, which binds another structure-specific endonuclease subunit SLX4 to form an active heterodimeric SLX1-SLX4 complex. This complex functions as a 5' flap endonuclease in yeast, and has also been identified as a Holliday junction resolvase in human.	3.24955e-36
NC_015738.1|WP_013980280.1|2076502_2076988_+|Cys-tRNA(Pro)-deacylase	gnl|CDD|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	1.91243e-70
NC_015738.1|WP_013980288.1|2087448_2087739_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.65348e-32
NC_015738.1|WP_013980279.1|2075497_2076394_-|glutamate-racemase	gnl|CDD|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.42214e-114
NC_015738.1|WP_013980291.1|2088844_2090671_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_015738.1|WP_013980283.1|2080218_2080686_-|SsrA-binding-protein-SmpB	gnl|CDD|376590	pfam01668, SmpB, SmpB protein.	1.4348e-84
NC_015738.1|WP_013980278.1|2074844_2075441_-|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl|CDD|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	1.55119e-90
NC_015738.1|WP_013980294.1|2092779_2093676_-|CRISPR-associated-endonuclease-Cas3''	gnl|CDD|193608	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; HD-like nuclease, specifically digesting double-stranded oligonucleotides and preferably cleaving at G:C pairs; signature gene for Type I.	4.37717e-28
NC_015738.1|WP_013980297.1|2098286_2100098_+|adenine-deaminase	gnl|CDD|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	0
NC_015738.1|WP_158309938.1|2096912_2098103_+|DNA-binding-response-regulator	gnl|CDD|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.30764e-14

Protein sequences

>NC_015738.1|WP_041691085.1|2084746_2085100_-|GIY-YIG-nuclease-family-protein
MPHEQDNPSFYLYVLECADGTWYTGYTVDVAERIKAHNAGTGAKYTRSRVPVRLIAQATFATKHEAMSAEYHFKQLSRRQKERLVRRAATEPFEDVLRSLMTLDATSPETPEPSPEP
>NC_015738.1|WP_050978536.1|2082500_2084750_+|bifunctional-alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)/trehalose-phosphatase
MAKRSKKANTMDTDTNLGAPARLLIISNRLPYSIEPDGDCNFTFARSVGGLASGLAPLHEQGDNLWIGWADAANVWEEDTRQRLTEALAERRCCPVFVEAEDAEAYYEGLSNSTLWPLFHGFPQFTRFNEAEWEAYCRVNERFCEAVLAVARPGDVLWVQDYHLMLLPSLLRAQLPDATIGFFLHIPFPDFEAFRMLPWRDQIVRGVLGADLIGFHAYDYVRHFLSSCRRIAGIENTSGALMVEGRLVQADAFPLGIDYELYRQTAQELPVRQEAKALFEEKGREGCKVMLSVERLDYSKGIPERLHAFDTFLDRHPEWCGRVVLVLVTVPSRENVASYRALKKQIDELVGLVNGKHSTMDWTPVDYYYRSLPFEQLVSLYAASDVMLVTPLRDGMNLVCKEYLACHDGEGGALVLSEMAGASYELHEAITVNPFDLEGIVDAMERALTMPWDEQRRRNAPMQERLKRYTSQKWAHDFLEATRDAKARQERLHARLLGPTSALRLIEAFRSSRHRVLLLDYDGTLMPFSNDPSRVAPDVELLALLAQLGSSTETEVVVVSGRDRATLDTWLGNLPIDLVAEHGVWFRRRTDRSWMLEGSLDDGWKTEMRAVLASFVDRTPGSFLEEKDFSLVWHYRACSQELADRRVIEIKNMLGDGLADQGLSLLDGNKVIEIKPRGIDKGHAAHRWFCDPSFDFLFAAGDDRTDEDVFDSAPEQAWTIHVGDGPTHARFALKDSFEMRELLGALAKG
>NC_015738.1|WP_041691084.1|2082038_2082320_-|hypothetical-protein
MQTYLAHYRSPAASDARATGVFEFESDARAGSKGNLRDARLKMLELYGKDAVSWNIDKVERKCASKPVQDGQLALDFRPPKVERKRAKRKEWW
>NC_015738.1|WP_013980284.1|2080699_2081881_-|M42-family-metallopeptidase
MKHKQVKFLKRLLETPSPTGTEAAVAEVVRTRLADVADEIQTDVMGSVHARLAGRASGPSFMLSAHMDEIGLMVTYISDEGFLSVAAVGGVDAAILPGLRVDVHASGCEEPLRGVVGRKPIHLISPDDRKSVTPIDQLVIDLGLPAKKVKKVVQIGDVITFGVGFERFGKNMAVSRAFDDKAGVWVAVRVLEELAKAGRAPGDFIAAATVQEEIGTRGATTSAYGVAPDVAVAFDVTHATDYPGIDKTKHGKFVCGEGPVIARGPNINPEVFDRLVAAAEAEGLPYQVEAEPGVTGTDARAIQITRSGIPTGLVSVPLRYMHTPTEVVCLDDLDATVCMLVRFALDLDENACFVPGMGVMYDDLAGDSDASATFEAAEASSDSQAGVTETAEK
>NC_015738.1|WP_013980283.1|2080218_2080686_-|SsrA-binding-protein-SmpB
MKREATTIAKNKKAFHEYEIVETIEAGIELTGTEVRSLRENHCQLTDCFALVRNGEVWLHNVHIPPYVNGNIANPDPDRKRKLLLHKKQIRELQAQTKEKGMALVPLKMYFKENSLVKVELALARGKKLYDKRASMAERDSRREVERALKERNRY
>NC_015738.1|WP_013980282.1|2079493_2080159_-|hypothetical-protein
MDLDEELDIMEDGAETDAEQVDEESEIEDVAEFQDDEEFDPDAEEEDLEEAYEGFFSEEGPEGEGNVDDEGNDGGLASAVSEIEGIDLSEEGFHIVDEDDATDEIDEIDEALDEEDKEYEIVELELDEDDIVRYLEDEEGNRIGFVLMEDGKEAEYLYVESDEEGDEDDNEFDFGITKEGVAQATNDMNAIYKDGIAVAAELKGAFDDIKSAFDFGSVLKK
>NC_015738.1|WP_151197563.1|2077045_2078599_-|peptidoglycan-binding-domain-containing-protein
MPAVPHPADSPKGATPARTAPEAGQNGFPPAGPMRPVDAVQPFVTKKRKKPLKVLGIVFGVLLGLLVVCYVGVAIFFSGRLMPNTTIGNLDVSMMTEADAAQALTKAAEGYTLTISGQGFSAKLSSADASLSLDEKKVVEAMLDDVNPWAWPLEITKQRDETDKLVAVSNGTGLEDTLRTAVEEFNAEATQPVNATIAYSSDAHAFVVEPEAIGTALDPEAVIKAADAALAELNPKVALTTEQLLQPTVIATDERLISAQTAANKMIAADMTLSMAGDTAAVVNADLISQWVRLGDDLTATLDEGALTAWVEQLAADCNTIGTERTYTRPDGKVVTVSGGSYGWTVDNEALLGIVRDGVANGTVDTVEVPCSTYGTAYNGVGQRDWGNRYCDIDLSEQYVRFYDDSGALVWESSCISGTPDGQHDTPTGVYWLNQKASPSKLIGYENGKKIYETTVQYWMPFVGNSVGLHDADWQPSFGGSMYANGYGSHGCVNLPVGMAAELYNIIQYSDVVVCHW
>NC_015738.1|WP_013980280.1|2076502_2076988_+|Cys-tRNA(Pro)-deacylase
MTKERDRKTNALRELDASGLPYEARFFECPKALSGVDVARLLGLEEDRVFKTLVTQGKSGEHYVFMIPVACELDLKKAATVVGEKSIQMVKSRELLELTGYIHGGCSPIGMKKLFPTVIDETAVLHERIAFSGGRIGCQIEMAPEDLGHIVPLAQADITVV
>NC_015738.1|WP_013980279.1|2075497_2076394_-|glutamate-racemase
MDQDSTQLEDMPCVFDNAPIGVFDSGFGGLTVAREIAKALPHESIVYVGDSARCPYGPRSLDEVGGYVQQIGSWLVDHGVKLIVIACNTATAAGLAEAQRTFPVPVIGVVEPGARAAAHATKNRRVGVIATKATVESDAYTKAIRHIDAGITVFSTATPRFVEIAEQGIRMAEGPIENYTSLASKVYIRPAFQEIAREYLEPLRRCDIDTLVLGCTHFPLLKALIGGVVGREVTLISSAKEAARDVAEALGRRNALAGIDREPRYDFFTTGEDIDEFRSFGSRVFRTPIDNVAHVDLS
>NC_015738.1|WP_013980278.1|2074844_2075441_-|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MKTVVIASNNAHKAQEIAEALDFPGWEFRTLRQMGIESDPAEDAETFLGNARIKAYAAHEASGGKAVLADDSGLEVDALDGAPGVFSARYAGEDADDARNNAKLLEALADVPDDRRTARFVCTLVFVDEDGTETIAKGTIEGRIAHEERGGGGFGYDPLFLPDVFADGRTLAEASSQEKNSVSHRGNALRALREALKK
>NC_015738.1|WP_013980288.1|2087448_2087739_-|CRISPR-associated-endonuclease-Cas2
MYVLVTYDVATSDIGGARWLRRVAKVCLQHGQRVQNSVFECSVDPGQFDQMKHELLERIDSEKDSLRFYHLGKGWRSKVEHVGVKPSYDPEGFLCI
>NC_015738.1|WP_013980290.1|2087929_2088835_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MAEPIKNRYDFVFFFDVKNGNPNGDPDAGNMPRIDPDTSHGIVSDVCLKRKVRNYVDLVKGEAVDDPDVEAGELGYKIYVQEAAVLNDRNRKAYVHYNMKPTSKKLPKSKEEQLKVTKFMCDNFFDIRAFGAVMTTEVNCGQVRGPIQMCFAESVDPVLPMEMSITRMAVTNEKDVEKEKTMGRKQYVPYGLYRAEGFISAALAEKTGFSQEDLDLFFEALMNMFEHDRSAARGLMASRKLFAFKHESKLGNTPAYKLFDAVSVKRLVEDGVETRAFSDYAIEVDEKAIPGDVELLEFPQE
>NC_015738.1|WP_013980291.1|2088844_2090671_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQELNNYYERLLADPERDVPARHWSIEKAAWELVLSHDGKLLGAYPLTDGEGREMRRFISLRVPEHATRSGTGMLPFFLCDNAAYMLGYDEKRGPEKLAAARTLHESVLGGCEDEGAHAVLRFFERDDRDADLDEDARTELTEGGGFAVFRLDGDRCRLHERPAVASAWTAHCDAKAVGEVVGQCAVTGEEGPLARLFPQVTGVPGAQSAGASLVSFNLQSFESYGKSQAYNASISERVAFNAGSALRQLCADRTHRVRVGETTVVFWADRPAPLEDEIVLMMFDPDELDRRAEDAAVVERVHNAFESMERGLPLQGVETETRYFVLGLAPNAARLAVRFFETSTLGRMAENFGAYLRDVSMADVRARSLRTLLLQTAPMGAADQLPSTLVNGCMDAMLTGRAFPQALYYAVLSRLRSDHARRNSWDMGQRAALLKACLVRRARLGAERANEQDGAVRVDDERGLKVYLDKERANRGYVLGRLFAVMEHTQRSALGEVNATIRDRYIGAASTTPARVFPHLLHNTQNHLAKLRKFNPGLNVKFEKANDEIMGLLEGPELFPKTLDAEDQGEFFVGYYQQRVDLWKSNKDDSEADADATADDNNETN
>NC_015738.1|WP_013980292.1|2090667_2091333_-|type-I-C-CRISPR-associated-protein-Cas5
MGYGIRILARGPRACFTRPEMKAERVSYDVITPSAARGLIEAVYWKPAIRWHIDRIEVLNEIRFDTFRRNELGGKLSYRNAKAAMERGEEVYEAASDDRQQRATMHLKDVAYVIDAHFTLTDQAGEDDTVEKHYNIALRRLRKGQCFNQPYFGCREFPADVALVEGDRELPPSFYAHDGERDLGFMLYDIDFDHNMEPLFFRAKMHDGVIDVARAWEAVVR
>NC_015738.1|WP_013980293.1|2091384_2092737_-|putative-helicase
MEHHSNYDFNDLDDEEKAKQRLAVQNWDAPIVVTTNVQLFESLFSNKPGKSRKVHNITNSVIILDEAQTLPDSLLKPSLAMLEELVAGYGASVVLCTATQPALEGLWPFGSEPREIVVHRKTFDEAFGNRVHYEMLGVIDEPDLVERLVSHHEVLCVVGTRRLARTIFDDVVARAVEQSDLIDAEHASAEGFFHLSAFMVPAHRSAVIDDIRTRLDNHERCVVISTQLVEAGVDVDFPQVYRELAGLDSIVQAAGRCNREGGLPNGGTVRVFECAIDGERQKTNVWLEKMKSIARNTIRQNGGEVDEALIPPFFDTRYSTENLDAKGIFKSTTAPDLVQSGFKTMPYEQCAVDYRIIDDDSVPVFVPWGDEGRKMLHELLASENPASLAMRLQRFSVGVPVWQIGAFEKADALEELEPFRILKEDSCRSFYREDVGLVAPGEEVLNNLIS
>NC_015738.1|WP_013980294.1|2092779_2093676_-|CRISPR-associated-endonuclease-Cas3''
MIEYYAHTGSDMEDKATWQLLSEHSNEVARRTEEFAGKFGMGAWGRTLGLLHDAGKVSCGFQKRLEGGPSIDHSTAGAKIAVDLYKSAGRFMGYELAGHHGGLPNGIAKTRSSAGIRLRTPLEDRLNGQIESYDAFFELIDAGEIVLPDPKELGAPMRPHRAFSGTANKVFSTFVLGHFLYSSLVDADYLDTERFMTPEAYEARDARELASMEELLSKLEEHMAKLMERVDDTPVNQARRAVYEDCLAAALESPGLFTMTVPTGGGKTLSSMAFALCHAVEHGMERVIAAIPFTSIVE
>NC_015738.1|WP_013980295.1|2094790_2096440_-|FAD-binding-protein
MAKKELTRRGFLTGAAAAGALTAFGAMTGCAANSGTTDSGQKVEQGGEAKTGWSWDTPPEPVADGDIVETVEADIVIVGAGISGVTAACRASELGASVAVVEKMSFPSSRGGHYAAYQSKAMTAAGMMNDPKDQIVADWLRFSGDRNKEELAWLFINRSSEVMDWLDDLSGDELSIIPIYTHYAGPQYYEHIGTHVIRGEFADNENKINAPVYFMWKKAEENGATFYFDAPAQQLLVEDGKVTGVIAEASDGYKKFAARKAVILATGDISGDTEMIEAYGDPLGLKPAVNAYTPAGANTGDGQKMGMWAGGHMQEYPVPTMIHLIRYCGLCFGFMYVNTEGKRFMNEDTWIQAKSIRVMEQPGGEYAWSVFDANWQKDVAASIPIAGGQFWDDMSRTTAEWTPDSATKVIEGALESGNAVKADTLEELAAAMGVDEKTFLAEVENYNALYAAGEDTQFHKRAELLTEIKQPPFYALKFGPSLLAMPGGLDVNERLQVLGEDDEPIEGLYAVGNASGGRYAVDYPVFINGNSHGSAMTWGYVAAENIVNG
>NC_015738.1|WP_158309938.1|2096912_2098103_+|DNA-binding-response-regulator
MAGGLAAAGSLGLSSFTIVTYPGGAPLLFIACAVMFSAGNALLLIMWGELWSMLATGRVGRYLYASYAFAFVLYFALLALPHVAASIIASLFPIVSTVILRSSQHEPRRSPSQVDFEIESFSPAKIALALVSLGAVHGFVQRFLNVSGTVPSGTIEQSLAIAGIAIAALAVYMVVVQPAAEPFALYKPIMPAFVIGLVLLTLLPPENAFVGNGLMLLAIYSLDMLVMLVSTDIAFRTREPVALCFGLALLGMRTGTTIASAAVYAFTSSELLDAQTSHVAYLVCIVIVVLIGCVVFTQVDLMKLYRPKPTETTIDGTAARCAHIAEICGLTPRETEVLQLLAAGRSAPYISGELYIAESTVKHHISSIYRKIGVYDRQSLMDVVLQGAAGKGALAD
>NC_015738.1|WP_013980297.1|2098286_2100098_+|adenine-deaminase
MINTFCKKPLWECSQTLSAVAQGREPADLVIKGAKLVNVCTAEIQENIDVAISSGRIAYLGQADHCIGENTQVIDAQGQYIAPGFLDGHIHVESSMMGAGEYARAVVPHGTTGIYWDPHEVCNVLGLDGVKVMAEDAARTPLKAMITTPSCVPAVPGFEDTGSFVGPDDIAETMEWPSVVGLGEMMNFPGILAGTDHAHGEVAETLKAGKIVTGHYSLPETDQGLNAYIASGVRCCHESTRAEDALAKMRLGMYAQLRYGSAWKDLPVLAEALLAKDIDTRFAMLVSDDTHPHTLVADGHLDHIVRTAVELGIDPITAIQMVTINCAQCFHMDHDLGSITPGKCADIVFLDNLESLQVTRVLIDGEVVAENGQTTFDLPPYQFPAWVTHSMHLGREITPDAFAIPAPEGAADGDMVRIRTIEVIPGKVGTFETHVDLPVTNGRLESDINQDVLKTFVFERHHETGKFGYGFTKGFGIKRGAMASTVAHDAHNLLVVGTNDEDMALAANTLATCGGGMVVVADGEVLGLVELPIAGLMDALPAEEMSEKVHALEQTWAEIGCTMPSPFMTMALIPLACLPELRLTNRGLVDCTTFQFADLVVQD
>NC_015738.1|WP_013980298.1|2100173_2100755_+|NUDIX-hydrolase
MSLIDDIRAYVPFNEQEAADKQVILRQLETDPHVFERSSLAHMACSIWTVDPSATHTLLVYHNIYNSWSWIGGHADGEHDLACVALRELEEETGVANARLVTSCGPGGIFSLEVLTVDGHEKRGSYVSSHLHLNVTYLAVASPNEPLRVKPDENSGVRWVPLDDAIALSTEPWIRDRVYRKLIDKLATIDLGI

Crispr_ID: NC_015738_6

• CRISPR_ID: NC_015738_6
• CRISPR_location: 2676128-2676227
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: csn2,cas2,cas1,cas9

Consensus repeat of NC_015738_6

Consensus_repeat	Method
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CRISPRCasFinder

spacers of NC_015738_6

>6.1|2676164|27|NC_015738|CRISPRCasFinder
GACTATATTTGCAGTCGCAGAAGCGAC

CRISPR arrays and Neighbor proteins around NC_015738_6

CRISPR arrays

The CRISPR arrays of NC_015738_6

>merge|NC_015738|6|2676128-2676227|CRISPRCasFinder
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACGACTATATTTGCAGTCGCAGAAGCGACTCTGTTTGACCAGTCAGAATTCCACTGCTCCAAAACG

>NC_015738|6|6|2676128-2676227|CRISPRCasFinder
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GACTATATTTGCAGTCGCAGAAGCGAC
TCTGTTTGACCAGTCAGAATTCCACTGCTCCAAAACG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015738.1|WP_013980830.1|2688864_2689803_-|TfoX/Sxy-family-DNA-transformation-protein	unknown	unknown	gnl|CDD|375901
NC_015738.1|WP_070097587.1|2677987_2678719_+|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980833.1|2691357_2692584_+|hypothetical-protein	unknown	unknown	gnl|CDD|226109
NC_015738.1|WP_013980832.1|2690318_2691365_+|hypothetical-protein	unknown	unknown	gnl|CDD|378341
NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|374653
NC_015738.1|WP_013980807.1|2669949_2670285_+|hypothetical-protein	unknown	unknown	gnl|CDD|286689
NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|274694
NC_015738.1|WP_013980812.1|2671919_2672129_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980811.1|2671578_2671869_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980825.1|2679000_2679378_+|DUF2513-domain-containing-protein	unknown	unknown	gnl|CDD|378481
NC_015738.1|WP_151197491.1|2676780_2677023_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_151197485.1|2670997_2671207_+|hypothetical-protein	unknown	unknown	gnl|CDD|379665
NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NC_015738.1|WP_013980817.1|2674512_2675472_+|HipA-domain-containing-protein	unknown	unknown	gnl|CDD|341491
NC_015738.1|WP_151197487.1|2673839_2674049_+|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980814.1|2672810_2673560_-|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|372640
NC_015738.1|WP_013980813.1|2672192_2672522_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980808.1|2670298_2670802_+|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980819.1|2675666_2676002_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl|CDD|374224
NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	gnl|CDD|213407

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	2.5e-37	122.4	0.4
NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	2.2e-86	284.1	0.0
NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	1.4e-271	899.1	0.0
NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	1.8e-76	251.2	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015738.1|WP_013980830.1|2688864_2689803_-|TfoX/Sxy-family-DNA-transformation-protein	gnl|CDD|375901	pfam18475, PIN7, PIN domain. This is a bacterial PIN-like domain of unknown function.	1.34654e-14
NC_015738.1|WP_013980832.1|2690318_2691365_+|hypothetical-protein	gnl|CDD|378341	pfam09989, DUF2229, CoA enzyme activase uncharacterized domain (DUF2229). Members of this family include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.	1.5735e-57
NC_015738.1|WP_013980833.1|2691357_2692584_+|hypothetical-protein	gnl|CDD|226109	COG3581, COG3581, Uncharacterized protein conserved in bacteria [Function unknown].	2.32096e-18
NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	3.1354e-119
NC_015738.1|WP_013980807.1|2669949_2670285_+|hypothetical-protein	gnl|CDD|286689	pfam09639, YjcQ, YjcQ protein. YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is expressed in bacteria and also in viruses. It appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown. However, it is thought to be a prophage head protein in viruses.	1.84374e-36
NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.51966e-97
NC_015738.1|WP_013980825.1|2679000_2679378_+|DUF2513-domain-containing-protein	gnl|CDD|378481	pfam10711, DUF2513, Hypothetical protein (DUF2513). This family is found in bacteria. The function is not known.	3.92783e-28
NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2	gnl|CDD|213407	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.00671e-81
NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.01255e-32
NC_015738.1|WP_013980817.1|2674512_2675472_+|HipA-domain-containing-protein	gnl|CDD|341491	cd17792, CtkA, serine/threonine-protein kinase CtkA and similar proteins. The Helicobacter pylori serine/threonine-protein kinase CtkA (proinflammatory kinase), encoded by the jhp940 gene, has been shown to be secreted by the bacterium and to induce cytokines in gastric epithelial cells. It may play a role in chronic gastric inflammation. CtkA autophosphorylates itself at a threonine residue near the N-terminus and it translocates into cultured human cells. It also enhances phosphorylation of the NF-kappaB p65 subunit at Ser276 in human epithelial cancer cells; phosphorylation at this position is known to activate the transcriptional activity of NF-kappaB.	3.69855e-129
NC_015738.1|WP_151197485.1|2670997_2671207_+|hypothetical-protein	gnl|CDD|379665	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain. This domain is found in a variety of phage integrase proteins.	7.51911e-05
NC_015738.1|WP_013980814.1|2672810_2673560_-|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	gnl|CDD|372640	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	4.52022e-08
NC_015738.1|WP_013980819.1|2675666_2676002_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl|CDD|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.72237e-10

Protein sequences

>NC_015738.1|WP_013980819.1|2675666_2676002_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MDYIYEGKIEQVESDWLVTFPAFPGCFGGGETLGKACENAAEALRLFIADAIDNGKRLPLPKFSKPPQAVFVVEVADEYIAKTKCTTVSEAAQETRCVARSHQSDAHQRSA
>NC_015738.1|WP_013980817.1|2674512_2675472_+|HipA-domain-containing-protein
MDTSVEADIKDLSAYNRAYGSGAYYRGNAGQKYGIIIDGELWLVKFPQSTKEFAGKHLPSYTSSPVSEYIGSKIYESLGIPVHETMLGYRDGKIVVACKDFDPQREFIDFHQIKNTVDEALLASGSRSSSRGSNLEDVLTVLREAKEFTKAEGSLERFWDMFVVDALIRNNDRNDTNWGVLAGQYGTFRLAPVFDNGNCLFNKRNTSLAQLRLENDALLEQDAIGTGVSFFLDNDGNHIHPFDFMLATDNADCKAAVVRVAERLDLNKVREIVESVPEQAFSREVLSREQKDFYKELLETAANKGLYPAADKISSVSLV
>NC_015738.1|WP_151197487.1|2673839_2674049_+|hypothetical-protein
MKVAKTDTLPYGKYGSTIVFLDGKKPHTGWKQVKIGGKEYTPVFMSGFHEDKIALQGIHDLAGMEVEFI
>NC_015738.1|WP_013980814.1|2672810_2673560_-|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein
MAVYQDKAKERIKKNVAKVRSHCNKGKKIHMGEADTRAIVREVLIDCLGWDEFEDVTQEECIKGGYCDYLIRYEGKPYAVVEVKKVSGGLTQDHMRQAKHYAQDKGLDWIILTNGDEWEVYNLYYRKKRGENPEPLTFHLFTTSFTDTENVKPSERIEMLYLLSKEARRKDELAVYHGMLKALSPQELTKRIMQKDVIDRLRISIKNDIGYRIDNDELAFRIAEIIKDEAIPSNISYYIKRLSEPPKRN
>NC_015738.1|WP_013980813.1|2672192_2672522_-|hypothetical-protein
MKFDYDWYKSNRNNREGVWIATACMVVKTFQSDGELYLVATIANDDATLSNHDVLLQATEEVSFDEVIDGDVLAILGTTEEMNQVTIGKSYSEWLPTINVAEMEVAPRQ
>NC_015738.1|WP_013980812.1|2671919_2672129_-|hypothetical-protein
MKIQFVQREDEKIVGRGNIVDVVSTECGWYRIVDDMGDECLVPPSVVEVVEKLPTPPETQPLGIETDEE
>NC_015738.1|WP_013980811.1|2671578_2671869_-|hypothetical-protein
MYISIADGTSEDGNVPEIAADNTALLQISVNTDGMDGSVCTVYVDGIETGQSTQERDRSRRSVFKAMRFPREPIPSNLWDGETPAIYKKAEYSVAG
>NC_015738.1|WP_151197485.1|2670997_2671207_+|hypothetical-protein
MEPRWAVTLKCLIDMWLPSLEVEAITYASYESATRMHILPALGGMLLPKITEFVLEEFFRRLPEGFVRV
>NC_015738.1|WP_013980808.1|2670298_2670802_+|hypothetical-protein
MTIFGNKMKDGRIVANFSTVSVPGIDAGWAVEAILGDRELVIRPRVTKTPEVVVGYDRILGCTLGTEEQIIEKQKSFYGRAILGSLIFGPAGAVVGGLDGLTKKRKKSMHTYLSIEYGSIMDPKAVVLEVVGATLGLSKWLEEFEDHAPWIVDESPKAPEPPKRIEL
>NC_015738.1|WP_013980807.1|2669949_2670285_+|hypothetical-protein
MANDDMHVIMYKILAYLYDCMKKGEEPQNSMISYDSDLLGIPAAYWNQIMAQMVELGLVKGIAVRYYDNSPTVLISKPYVTLEGVQFMQENSMMSKALKFLKESKAALPFI
>NC_015738.1|WP_151197491.1|2676780_2677023_-|hypothetical-protein
MEHVTGFSISKDSLYRLETGKQTPSVNFMIAMNIMLNLSPTDCSMVEMCIPKEWNDLSRLNNSHDFDTEKWNIGLESIPL
>NC_015738.1|WP_070097587.1|2677987_2678719_+|hypothetical-protein
MPDFTGKTVVEGYDAEALLDQYKSARKAVEAMFSEKDWTYLDSKLKTKLIVRELKRQMDDSAMREISGGLGGGIGNRWFKNYQNEVFSVTKNGETLFEKEGDQKSVDLTDIELAKIKDCDISHTHTTPVGGTFSSEDIEVTVVGWVLSHTVTATVTHESYRLERTDKATKDTGNRFFKAFSSYERSKREDIRYKIWQSEYESRGIESPLVESDLIRAELELKIALHQWLEEHAEDYGYLYKKL
>NC_015738.1|WP_013980825.1|2679000_2679378_+|DUF2513-domain-containing-protein
MKRDMNLVRTLLIEIEGADSQIIFTDASIDGYTLNDIAFHIELMDSHGLLFGANTQYTSSGRAVNATVEGLSWDGFDYLDAIRSPKVWSKASNAIRDTVGETSLGVIKDVCSTLAASLIKANLGI
>NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2
MKLVFSGLEKPQYLEPGRVSVLEVENQRLFTRICQSIVSGEGAQAVEPYTLWNNQGKEVKPKTALLPIVNPFELPWTERELLGGLYQRYETMLLEDYEMRDKLSQLTREISSSISLLGFQLASNCEFEIEWDMRRYLKAFGFGVDFDSRDSLLDNVIKFIHLAMDVSLQRALVFVNLKTFLTKNELETLYEQVIFSQIPLLLLENRKDCYCSDYEIKRCVDQYFLET
>NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2
MSDSIRVRYMRMLVFFDLPVETASQRKEYRLFRKYLIKDGYLMLQESVYAKLVTNEGAASAEIMRLRKHRPPEGLVQVLKVTEKQFATMTYITGNRMPYDELDTMEEFVVL
>NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1
MSFRTVFVESPCRCSYQSGYMVVRKEDDTAKIHLSEISSIVLQTQQVFISAYLMAELAKSKISLVISDEKCNPVGQYLPLYGAHNTSKRIGEQLEWGEPIKKRVWQRVVKDKIEQQAQFLDERDYSTEAKILYSIVPEVRSGDTTNREAQAARIYFQALFGTNFSREIDCPLNAALNYGYAVLLSMVNREVVSRGYLTQCGICHRNEYNQFNLTCDFMEPFRVAIDRLVVDCLEGEFDAETRRILGDVSNKGMSYRGGSYRLGSVVSLYVQDCLNALNKKLSPDDIESFRIL
>NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNLRHVGNYNIGLDMGTASVGWAAIDEQGELLHFKGKPTWGSRLFDSANTAATARMPRGQRRRYIRRRWRLDLLQKFFSEEMAEKDPEFFIRLRQSSLWPEDREGGHTAYHWPLFNDSDFNEKEYYEKFPTIFHLRQWLMETDEKADIRLIYLAFHNIVKHRGNFLQENNDSLSAQNANMRESLESFCIALEEWCDEKELTCSCDPQKLEHLFKEVKYRSDIRDGFAALLGLACSGENEVDVKAMAKEMGKAIVGYKADFSKIFTECDKEGSSFRLSDDEGPEAFLDICPDDGIALFEAIQMVYSSFILTGMLTEKGLSLSKISAYNQYGQDLESLKALVKEYVPNEYSSFFRGPTYSGSTEYDPSKAQGYTRYNLGPSKKGSGAKPMAYEDFKKSVEQLFANTNAINDERYKEMMGRFAEEKFLRRLRTSDNGRIPFQLNLEEMTAIIINQGKYYPFLLEQQEKLESLVRFRIPYYVGPLTRINARLDSKGNACFAWSKRKDGMDSASIKPWNWDEVIDKHASAQAFIERMTGTCTYLRGEPVLPRCSLLYEEYCVLNELNGARWTQDGDKFIRFDYKDRSDIIEELFKKRRGRIQYAAVADWMKQERSHANVHVSGGQGENAFESRLSSYHFFCNDVFGVDELPGSYVDMVEEIILWSTLFEDRSILREEIQRKYGDVLNEEQIKTICKKRFSGWGRLSRKLLCSLKAQTDNGPKSIMDILQEGDQNNGRVGRAMVFQEILHDEQLGFEQKIEEENTQSMLEGENLLIEDLPGSPAIRRSINQAVRIVDEIVGIAGHAPDNIFIEVTREDDTKKKGKRTTTRYSNIQKALEALKEEGAEALRELKTYKHNELDKRLSLYFMQNGKSLYSGIPLDIRRLSEYQIDHIIPQSYIKDDSYENMALVLPGENQSKADNLLISQDIRIKMKATWTALHKAGLMGDKKYNNLMNSSISDAKMKGFINRQLVETSQSVKLTQMMLSQKYPGAKVRPIKASISSQLRDACDLVKCREANDYHHAHDAYLACQVGRFVLKRHSSMFDNPIGMTKVIRDFVKRQGQEFKRNGKLPAYASRSGFIVQSFMRSGFDAETGELLRDDWNAPFEIARIKRCLNYRDCYISRMPMEDSGAFWDATIYSPKAGKKGALPVKQGLPVEKYGSYSREQFAYFFVYKAYNPKKKAYRLEFEAVPVRVASAVETRENALEEYAKSVAKQAGLEFVEVARPKVYKYQLIELGEDRLYITGKREVRNASQLAFSLDEIDLLKRLAEGEETSSEERERLFDVLIEKYARYAPRLARQLSVDSMSATFETLNAEEQLGILLSLVEIANGKRNMIDLSSAGGSKNAGCMNPTFSSELSSPGSNFTFIDQSVTGMFERRQRLEL
>NC_015738.1|WP_013980830.1|2688864_2689803_-|TfoX/Sxy-family-DNA-transformation-protein
MIDVTADKHPGKPIRAFFIDSENGAEKLLEGMEFLTRSDTVIVFHRDNFPAELKNRLELGPSAVEWIKCVDRGVKNSMDVQIIAELSMRLVEGGFENGYIVSEDKGYLPAVHYLQRTPKGREHEVALVKDIAHAVMRTIFSSMTKLKHAESVENVEETFAPLYGEGEARVLTGKLEKIFAQLHADSQKDVGAVQCDEGAMSKSLTEGVDQLVDEPTEQKSKSVSFIDMPGIGRALAGKLESAGIASPAELEQIGAVEAWKRIYYLDASFPPKWVYSFEAAIRGVSIRSLDPKRKRRLKSDIRALLIKQKCAA
>NC_015738.1|WP_013980832.1|2690318_2691365_+|hypothetical-protein
MSTLGLRSRAEYRGLQRIGMPRALLYYRYGTMWTTFLQEIGCEVITSDKTDKAIATAGDQLSIDECCLASKVYLGHVESLLDRCDAVFVPSVANLGNHLGFCTKFQALPDLVYNTFRDRNPSLVTYLVDVNAEKAKPHDSLIDLGQRFGVSPREAKRAFKTAYKAQLAADDARARAQDQMLATLHTAPASKTPAASTQGTSSAVSAEQPLAILLVAHPYVAHDAYVGGRVVELLRNLGTTVLFADETDRDRALKASFDFSETMPWIINRELIGSMTLLRPHIDGFVLVSSFPCGPDSMTDDAIMRCIQGRPILNLTIDAQSGTAGLETRVESFVDILRFQKRGGYFHG
>NC_015738.1|WP_013980833.1|2691357_2692584_+|hypothetical-protein
MDDQRKPIDPVTTFLQKVEDVRDARVTMQLDEKHPFALLSKRPKKPERIKRDRHARTRVAFFRYSYYDIAFKYFVEQVLDADYVPLPAPTKRTIELGSANSNDFVCAPFKHILGDYIEALERGANVLVQFAGPCRLGYYGELQESILRDLGYEFDMLNFATCTGKPLQEYVEICKKKINPNVSVPKGVRHMLATFKMIEHLDQLNDFYLENAGFEIEHGSFARTLADTHARLRTATNEREIEDAFTAGISALRALPLRKPADPLRVGIVGEYFTAADPHSNLELERKLLSMGVELHRELNMTNRNLRYNEKNLRASASDYVKFNMGPTSSLTIATALKYAQAGFDGVVHLKSSGCTPEIDCIPVLQRVSRDTGVPMLYLSYDSQTSDTGLDTRLEAFYDMIAMKKVKG

Crispr_ID: NC_015738_7

• CRISPR_ID: NC_015738_7
• CRISPR_location: 2677116-2677941
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 12 spacers
• Cas_protein_info: csn2,cas2,cas1,cas9

Consensus repeat of NC_015738_7

Consensus_repeat	Method
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	PILER-CR
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CRISPRCasFinder
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CRT

spacers of NC_015738_7

>7.1|2677152|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT
TAGGCGGTGACCGGTGATGCGCCTGGAAGA
>7.2|2677218|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT
GGTGATCGAAATCTGAACCATACAGAGCAT
>7.3|2677284|29|NC_015738|PILER-CR,CRISPRCasFinder,CRT
CTCTTGTCTGTTATGCCGCCGCCGGCGTG
>7.4|2677349|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT
AGCTTCTTTAATACCCAATCTTTCGCCTCT
>7.5|2677415|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT
TCACCGTACGGCGGCTGAACACCTGTCAAA
>7.6|2677481|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT
CGAACCCCGCGCCGTCCGCCAAGATGTAGC
>7.7|2677547|29|NC_015738|PILER-CR,CRISPRCasFinder,CRT
CGGGCGATCGGGGACGTGGCCCTCTCGAT
>7.8|2677612|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT
GTATTGATGGCCCTGTCCAAAAACTCGTCC
>7.9|2677678|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT
CACTCCGTCAGATCAAGCGGCTTGCCCTCA
>7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT
CAGGCTGTTCTCGCTCAGGCTGACGCGGCT
>7.11|2677810|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT
ATCTTGCTCCAAAGGTACGTCAACCTAGTG
>7.12|2677876|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT
CCATCATCGCATATCAAGAACTAAAGGACG

CRISPR arrays and Neighbor proteins around NC_015738_7

CRISPR arrays

The CRISPR arrays of NC_015738_7

>merge|NC_015738|7|2677116-2677941|PILER-CR,CRISPRCasFinder,CRT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTAGGCGGTGACCGGTGATGCGCCTGGAAGAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACGGTGATCGAAATCTGAACCATACAGAGCATGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCTCTTGTCTGTTATGCCGCCGCCGGCGTGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACAGCTTCTTTAATACCCAATCTTTCGCCTCTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTCACCGTACGGCGGCTGAACACCTGTCAAAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCGAACCCCGCGCCGTCCGCCAAGATGTAGCGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCGGGCGATCGGGGACGTGGCCCTCTCGATGTTTGTCTACCAGTCAGAATTCCACTGCTCCAAAACGTATTGATGGCCCTGTCCAAAAACTCGTCCGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCACTCCGTCAGATCAAGCGGCTTGCCCTCAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCAGGCTGTTCTCGCTCAGGCTGACGCGGCTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACATCTTGCTCCAAAGGTACGTCAACCTAGTGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCCATCATCGCATATCAAGAACTAAAGGACGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC

>NC_015738|7|2|2677116-2677941|PILER-CR
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TAGGCGGTGACCGGTGATGCGCCTGGAAGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GGTGATCGAAATCTGAACCATACAGAGCAT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTCTTGTCTGTTATGCCGCCGCCGGCGTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGCTTCTTTAATACCCAATCTTTCGCCTCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCACCGTACGGCGGCTGAACACCTGTCAAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGAACCCCGCGCCGTCCGCCAAGATGTAGC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGGCGATCGGGGACGTGGCCCTCTCGAT
GTTTGTCTACCAGTCAGAATTCCACTGCTCCAAAAC	GTATTGATGGCCCTGTCCAAAAACTCGTCC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CACTCCGTCAGATCAAGCGGCTTGCCCTCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CAGGCTGTTCTCGCTCAGGCTGACGCGGCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	ATCTTGCTCCAAAGGTACGTCAACCTAGTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CCATCATCGCATATCAAGAACTAAAGGACG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC

>NC_015738|7|7|2677116-2677941|CRISPRCasFinder
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TAGGCGGTGACCGGTGATGCGCCTGGAAGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GGTGATCGAAATCTGAACCATACAGAGCAT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTCTTGTCTGTTATGCCGCCGCCGGCGTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGCTTCTTTAATACCCAATCTTTCGCCTCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCACCGTACGGCGGCTGAACACCTGTCAAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGAACCCCGCGCCGTCCGCCAAGATGTAGC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGGCGATCGGGGACGTGGCCCTCTCGAT
GTTTGTCTACCAGTCAGAATTCCACTGCTCCAAAAC	GTATTGATGGCCCTGTCCAAAAACTCGTCC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CACTCCGTCAGATCAAGCGGCTTGCCCTCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CAGGCTGTTCTCGCTCAGGCTGACGCGGCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	ATCTTGCTCCAAAGGTACGTCAACCTAGTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CCATCATCGCATATCAAGAACTAAAGGACG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC

>NC_015738|7|2|2677116-2677941|CRT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TAGGCGGTGACCGGTGATGCGCCTGGAAGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GGTGATCGAAATCTGAACCATACAGAGCAT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTCTTGTCTGTTATGCCGCCGCCGGCGTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGCTTCTTTAATACCCAATCTTTCGCCTCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCACCGTACGGCGGCTGAACACCTGTCAAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGAACCCCGCGCCGTCCGCCAAGATGTAGC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGGCGATCGGGGACGTGGCCCTCTCGAT
GTTTGTCTACCAGTCAGAATTCCACTGCTCCAAAAC	GTATTGATGGCCCTGTCCAAAAACTCGTCC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CACTCCGTCAGATCAAGCGGCTTGCCCTCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CAGGCTGTTCTCGCTCAGGCTGACGCGGCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	ATCTTGCTCCAAAGGTACGTCAACCTAGTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CCATCATCGCATATCAAGAACTAAAGGACG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015738.1|WP_013980830.1|2688864_2689803_-|TfoX/Sxy-family-DNA-transformation-protein	unknown	unknown	gnl|CDD|375901
NC_015738.1|WP_070097587.1|2677987_2678719_+|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_151197489.1|2676038_2676521_+|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|374653
NC_015738.1|WP_013980832.1|2690318_2691365_+|hypothetical-protein	unknown	unknown	gnl|CDD|378341
NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|274694
NC_015738.1|WP_013980812.1|2671919_2672129_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980811.1|2671578_2671869_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980825.1|2679000_2679378_+|DUF2513-domain-containing-protein	unknown	unknown	gnl|CDD|378481
NC_015738.1|WP_151197491.1|2676780_2677023_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_151197485.1|2670997_2671207_+|hypothetical-protein	unknown	unknown	gnl|CDD|379665
NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NC_015738.1|WP_013980817.1|2674512_2675472_+|HipA-domain-containing-protein	unknown	unknown	gnl|CDD|341491
NC_015738.1|WP_151197487.1|2673839_2674049_+|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980814.1|2672810_2673560_-|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|372640
NC_015738.1|WP_013980813.1|2672192_2672522_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980819.1|2675666_2676002_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl|CDD|374224
NC_015738.1|WP_013980834.1|2692583_2693540_+|2-hydroxyglutaryl-CoA-dehydratase	unknown	unknown	gnl|CDD|224835
NC_015738.1|WP_013980833.1|2691357_2692584_+|hypothetical-protein	unknown	unknown	gnl|CDD|226109
NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	gnl|CDD|213407

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	2.5e-37	122.4	0.4
NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	2.2e-86	284.1	0.0
NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	1.4e-271	899.1	0.0
NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	1.8e-76	251.2	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015738.1|WP_013980830.1|2688864_2689803_-|TfoX/Sxy-family-DNA-transformation-protein	gnl|CDD|375901	pfam18475, PIN7, PIN domain. This is a bacterial PIN-like domain of unknown function.	1.34654e-14
NC_015738.1|WP_013980832.1|2690318_2691365_+|hypothetical-protein	gnl|CDD|378341	pfam09989, DUF2229, CoA enzyme activase uncharacterized domain (DUF2229). Members of this family include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.	1.5735e-57
NC_015738.1|WP_013980833.1|2691357_2692584_+|hypothetical-protein	gnl|CDD|226109	COG3581, COG3581, Uncharacterized protein conserved in bacteria [Function unknown].	2.32096e-18
NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	3.1354e-119
NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.51966e-97
NC_015738.1|WP_013980825.1|2679000_2679378_+|DUF2513-domain-containing-protein	gnl|CDD|378481	pfam10711, DUF2513, Hypothetical protein (DUF2513). This family is found in bacteria. The function is not known.	3.92783e-28
NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2	gnl|CDD|213407	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.00671e-81
NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.01255e-32
NC_015738.1|WP_013980817.1|2674512_2675472_+|HipA-domain-containing-protein	gnl|CDD|341491	cd17792, CtkA, serine/threonine-protein kinase CtkA and similar proteins. The Helicobacter pylori serine/threonine-protein kinase CtkA (proinflammatory kinase), encoded by the jhp940 gene, has been shown to be secreted by the bacterium and to induce cytokines in gastric epithelial cells. It may play a role in chronic gastric inflammation. CtkA autophosphorylates itself at a threonine residue near the N-terminus and it translocates into cultured human cells. It also enhances phosphorylation of the NF-kappaB p65 subunit at Ser276 in human epithelial cancer cells; phosphorylation at this position is known to activate the transcriptional activity of NF-kappaB.	3.69855e-129
NC_015738.1|WP_151197485.1|2670997_2671207_+|hypothetical-protein	gnl|CDD|379665	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain. This domain is found in a variety of phage integrase proteins.	7.51911e-05
NC_015738.1|WP_013980814.1|2672810_2673560_-|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	gnl|CDD|372640	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	4.52022e-08
NC_015738.1|WP_013980819.1|2675666_2676002_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl|CDD|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.72237e-10
NC_015738.1|WP_013980834.1|2692583_2693540_+|2-hydroxyglutaryl-CoA-dehydratase	gnl|CDD|224835	COG1924, COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism].	1.63788e-96

Protein sequences

>NC_015738.1|WP_151197491.1|2676780_2677023_-|hypothetical-protein
MEHVTGFSISKDSLYRLETGKQTPSVNFMIAMNIMLNLSPTDCSMVEMCIPKEWNDLSRLNNSHDFDTEKWNIGLESIPL
>NC_015738.1|WP_151197489.1|2676038_2676521_+|hypothetical-protein
MTKSLNASESLSPSRTASSIAFEHVFFNCLFDYQSEFHCSKTTIFAVAEATLFDQSEFHCSKTQSRKDAAKAFMEAKDAKLVLTAALRKMNANTGRKTTLDKAIDSLSSYPAREAIARRDPSAKYSEGLAVAIEMAYNGEAKNKTFARYILDELKGRLSE
>NC_015738.1|WP_013980819.1|2675666_2676002_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MDYIYEGKIEQVESDWLVTFPAFPGCFGGGETLGKACENAAEALRLFIADAIDNGKRLPLPKFSKPPQAVFVVEVADEYIAKTKCTTVSEAAQETRCVARSHQSDAHQRSA
>NC_015738.1|WP_013980817.1|2674512_2675472_+|HipA-domain-containing-protein
MDTSVEADIKDLSAYNRAYGSGAYYRGNAGQKYGIIIDGELWLVKFPQSTKEFAGKHLPSYTSSPVSEYIGSKIYESLGIPVHETMLGYRDGKIVVACKDFDPQREFIDFHQIKNTVDEALLASGSRSSSRGSNLEDVLTVLREAKEFTKAEGSLERFWDMFVVDALIRNNDRNDTNWGVLAGQYGTFRLAPVFDNGNCLFNKRNTSLAQLRLENDALLEQDAIGTGVSFFLDNDGNHIHPFDFMLATDNADCKAAVVRVAERLDLNKVREIVESVPEQAFSREVLSREQKDFYKELLETAANKGLYPAADKISSVSLV
>NC_015738.1|WP_151197487.1|2673839_2674049_+|hypothetical-protein
MKVAKTDTLPYGKYGSTIVFLDGKKPHTGWKQVKIGGKEYTPVFMSGFHEDKIALQGIHDLAGMEVEFI
>NC_015738.1|WP_013980814.1|2672810_2673560_-|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein
MAVYQDKAKERIKKNVAKVRSHCNKGKKIHMGEADTRAIVREVLIDCLGWDEFEDVTQEECIKGGYCDYLIRYEGKPYAVVEVKKVSGGLTQDHMRQAKHYAQDKGLDWIILTNGDEWEVYNLYYRKKRGENPEPLTFHLFTTSFTDTENVKPSERIEMLYLLSKEARRKDELAVYHGMLKALSPQELTKRIMQKDVIDRLRISIKNDIGYRIDNDELAFRIAEIIKDEAIPSNISYYIKRLSEPPKRN
>NC_015738.1|WP_013980813.1|2672192_2672522_-|hypothetical-protein
MKFDYDWYKSNRNNREGVWIATACMVVKTFQSDGELYLVATIANDDATLSNHDVLLQATEEVSFDEVIDGDVLAILGTTEEMNQVTIGKSYSEWLPTINVAEMEVAPRQ
>NC_015738.1|WP_013980812.1|2671919_2672129_-|hypothetical-protein
MKIQFVQREDEKIVGRGNIVDVVSTECGWYRIVDDMGDECLVPPSVVEVVEKLPTPPETQPLGIETDEE
>NC_015738.1|WP_013980811.1|2671578_2671869_-|hypothetical-protein
MYISIADGTSEDGNVPEIAADNTALLQISVNTDGMDGSVCTVYVDGIETGQSTQERDRSRRSVFKAMRFPREPIPSNLWDGETPAIYKKAEYSVAG
>NC_015738.1|WP_151197485.1|2670997_2671207_+|hypothetical-protein
MEPRWAVTLKCLIDMWLPSLEVEAITYASYESATRMHILPALGGMLLPKITEFVLEEFFRRLPEGFVRV
>NC_015738.1|WP_070097587.1|2677987_2678719_+|hypothetical-protein
MPDFTGKTVVEGYDAEALLDQYKSARKAVEAMFSEKDWTYLDSKLKTKLIVRELKRQMDDSAMREISGGLGGGIGNRWFKNYQNEVFSVTKNGETLFEKEGDQKSVDLTDIELAKIKDCDISHTHTTPVGGTFSSEDIEVTVVGWVLSHTVTATVTHESYRLERTDKATKDTGNRFFKAFSSYERSKREDIRYKIWQSEYESRGIESPLVESDLIRAELELKIALHQWLEEHAEDYGYLYKKL
>NC_015738.1|WP_013980825.1|2679000_2679378_+|DUF2513-domain-containing-protein
MKRDMNLVRTLLIEIEGADSQIIFTDASIDGYTLNDIAFHIELMDSHGLLFGANTQYTSSGRAVNATVEGLSWDGFDYLDAIRSPKVWSKASNAIRDTVGETSLGVIKDVCSTLAASLIKANLGI
>NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2
MKLVFSGLEKPQYLEPGRVSVLEVENQRLFTRICQSIVSGEGAQAVEPYTLWNNQGKEVKPKTALLPIVNPFELPWTERELLGGLYQRYETMLLEDYEMRDKLSQLTREISSSISLLGFQLASNCEFEIEWDMRRYLKAFGFGVDFDSRDSLLDNVIKFIHLAMDVSLQRALVFVNLKTFLTKNELETLYEQVIFSQIPLLLLENRKDCYCSDYEIKRCVDQYFLET
>NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2
MSDSIRVRYMRMLVFFDLPVETASQRKEYRLFRKYLIKDGYLMLQESVYAKLVTNEGAASAEIMRLRKHRPPEGLVQVLKVTEKQFATMTYITGNRMPYDELDTMEEFVVL
>NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1
MSFRTVFVESPCRCSYQSGYMVVRKEDDTAKIHLSEISSIVLQTQQVFISAYLMAELAKSKISLVISDEKCNPVGQYLPLYGAHNTSKRIGEQLEWGEPIKKRVWQRVVKDKIEQQAQFLDERDYSTEAKILYSIVPEVRSGDTTNREAQAARIYFQALFGTNFSREIDCPLNAALNYGYAVLLSMVNREVVSRGYLTQCGICHRNEYNQFNLTCDFMEPFRVAIDRLVVDCLEGEFDAETRRILGDVSNKGMSYRGGSYRLGSVVSLYVQDCLNALNKKLSPDDIESFRIL
>NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNLRHVGNYNIGLDMGTASVGWAAIDEQGELLHFKGKPTWGSRLFDSANTAATARMPRGQRRRYIRRRWRLDLLQKFFSEEMAEKDPEFFIRLRQSSLWPEDREGGHTAYHWPLFNDSDFNEKEYYEKFPTIFHLRQWLMETDEKADIRLIYLAFHNIVKHRGNFLQENNDSLSAQNANMRESLESFCIALEEWCDEKELTCSCDPQKLEHLFKEVKYRSDIRDGFAALLGLACSGENEVDVKAMAKEMGKAIVGYKADFSKIFTECDKEGSSFRLSDDEGPEAFLDICPDDGIALFEAIQMVYSSFILTGMLTEKGLSLSKISAYNQYGQDLESLKALVKEYVPNEYSSFFRGPTYSGSTEYDPSKAQGYTRYNLGPSKKGSGAKPMAYEDFKKSVEQLFANTNAINDERYKEMMGRFAEEKFLRRLRTSDNGRIPFQLNLEEMTAIIINQGKYYPFLLEQQEKLESLVRFRIPYYVGPLTRINARLDSKGNACFAWSKRKDGMDSASIKPWNWDEVIDKHASAQAFIERMTGTCTYLRGEPVLPRCSLLYEEYCVLNELNGARWTQDGDKFIRFDYKDRSDIIEELFKKRRGRIQYAAVADWMKQERSHANVHVSGGQGENAFESRLSSYHFFCNDVFGVDELPGSYVDMVEEIILWSTLFEDRSILREEIQRKYGDVLNEEQIKTICKKRFSGWGRLSRKLLCSLKAQTDNGPKSIMDILQEGDQNNGRVGRAMVFQEILHDEQLGFEQKIEEENTQSMLEGENLLIEDLPGSPAIRRSINQAVRIVDEIVGIAGHAPDNIFIEVTREDDTKKKGKRTTTRYSNIQKALEALKEEGAEALRELKTYKHNELDKRLSLYFMQNGKSLYSGIPLDIRRLSEYQIDHIIPQSYIKDDSYENMALVLPGENQSKADNLLISQDIRIKMKATWTALHKAGLMGDKKYNNLMNSSISDAKMKGFINRQLVETSQSVKLTQMMLSQKYPGAKVRPIKASISSQLRDACDLVKCREANDYHHAHDAYLACQVGRFVLKRHSSMFDNPIGMTKVIRDFVKRQGQEFKRNGKLPAYASRSGFIVQSFMRSGFDAETGELLRDDWNAPFEIARIKRCLNYRDCYISRMPMEDSGAFWDATIYSPKAGKKGALPVKQGLPVEKYGSYSREQFAYFFVYKAYNPKKKAYRLEFEAVPVRVASAVETRENALEEYAKSVAKQAGLEFVEVARPKVYKYQLIELGEDRLYITGKREVRNASQLAFSLDEIDLLKRLAEGEETSSEERERLFDVLIEKYARYAPRLARQLSVDSMSATFETLNAEEQLGILLSLVEIANGKRNMIDLSSAGGSKNAGCMNPTFSSELSSPGSNFTFIDQSVTGMFERRQRLEL
>NC_015738.1|WP_013980830.1|2688864_2689803_-|TfoX/Sxy-family-DNA-transformation-protein
MIDVTADKHPGKPIRAFFIDSENGAEKLLEGMEFLTRSDTVIVFHRDNFPAELKNRLELGPSAVEWIKCVDRGVKNSMDVQIIAELSMRLVEGGFENGYIVSEDKGYLPAVHYLQRTPKGREHEVALVKDIAHAVMRTIFSSMTKLKHAESVENVEETFAPLYGEGEARVLTGKLEKIFAQLHADSQKDVGAVQCDEGAMSKSLTEGVDQLVDEPTEQKSKSVSFIDMPGIGRALAGKLESAGIASPAELEQIGAVEAWKRIYYLDASFPPKWVYSFEAAIRGVSIRSLDPKRKRRLKSDIRALLIKQKCAA
>NC_015738.1|WP_013980832.1|2690318_2691365_+|hypothetical-protein
MSTLGLRSRAEYRGLQRIGMPRALLYYRYGTMWTTFLQEIGCEVITSDKTDKAIATAGDQLSIDECCLASKVYLGHVESLLDRCDAVFVPSVANLGNHLGFCTKFQALPDLVYNTFRDRNPSLVTYLVDVNAEKAKPHDSLIDLGQRFGVSPREAKRAFKTAYKAQLAADDARARAQDQMLATLHTAPASKTPAASTQGTSSAVSAEQPLAILLVAHPYVAHDAYVGGRVVELLRNLGTTVLFADETDRDRALKASFDFSETMPWIINRELIGSMTLLRPHIDGFVLVSSFPCGPDSMTDDAIMRCIQGRPILNLTIDAQSGTAGLETRVESFVDILRFQKRGGYFHG
>NC_015738.1|WP_013980833.1|2691357_2692584_+|hypothetical-protein
MDDQRKPIDPVTTFLQKVEDVRDARVTMQLDEKHPFALLSKRPKKPERIKRDRHARTRVAFFRYSYYDIAFKYFVEQVLDADYVPLPAPTKRTIELGSANSNDFVCAPFKHILGDYIEALERGANVLVQFAGPCRLGYYGELQESILRDLGYEFDMLNFATCTGKPLQEYVEICKKKINPNVSVPKGVRHMLATFKMIEHLDQLNDFYLENAGFEIEHGSFARTLADTHARLRTATNEREIEDAFTAGISALRALPLRKPADPLRVGIVGEYFTAADPHSNLELERKLLSMGVELHRELNMTNRNLRYNEKNLRASASDYVKFNMGPTSSLTIATALKYAQAGFDGVVHLKSSGCTPEIDCIPVLQRVSRDTGVPMLYLSYDSQTSDTGLDTRLEAFYDMIAMKKVKG
>NC_015738.1|WP_013980834.1|2692583_2693540_+|2-hydroxyglutaryl-CoA-dehydratase
MENAFLGIDTGSISTKGVIIDANRHIIARSYLWTEGDPAHAARRVIDDLAGQIDRSAVQVVGVGTTGSARRLIGAMTGASVVKNEITAHAVGTTYLHPDVRTILEIGGQDSKIICVDGGIAVDYAMNTLCAAGTGAFLSSQAHRLGVEVEEFGDIAATSQKPANIAARCTVFAESDLVHKIQVGYAREDIIAGLCNAVASNYLNNVGKGKRITAPVVFQGGVSKNTGVVRAFERMLGMDVLVDPDGHLMGAFGAALLAADTPTAAEPFDFEAMEHFEFKTREIECSKCANHCEIICVYRDETLIDSWGNRCEKGEVRV

Crispr_ID: NC_015738_8

• CRISPR_ID: NC_015738_8
• CRISPR_location: 2679629-2682490
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 43 spacers
• Cas_protein_info: csn2,cas2,cas1,cas9

Consensus repeat of NC_015738_8

Consensus_repeat	Method
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CRISPRCasFinder
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CRT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	PILER-CR
AGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	PILER-CR

spacers of NC_015738_8

>8.1|2679665|30|NC_015738|CRISPRCasFinder,CRT
TGTCAGCACGTCCTACAAGGACTGGGAAGG
>8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT
CAGGCTGTTCTCGCTCAGGCTGACGCGGCT
>8.3|2679797|30|NC_015738|CRISPRCasFinder,CRT
TTCGAAGCGAGCATGGCTCACTTATGTTCA
>8.4|2679863|30|NC_015738|CRISPRCasFinder,CRT
AGTTGCAAGCATGGTATGTGATCTTCCTTA
>8.5|2679929|30|NC_015738|CRISPRCasFinder,CRT
ACCTGCTTGGGGGTAAGGTGCGGCTGCTCT
>8.6|2679995|30|NC_015738|CRISPRCasFinder,CRT
GGTAGTTTCTCGAGGCGGCATGCCTGGGAA
>8.7|2680061|29|NC_015738|CRISPRCasFinder,CRT
CGTGGATTGATACGTGCCATCATGCACTC
>8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT
CGACCCTCGGCGGTCTTGGCCGATTCCTCG
>8.9|2680192|30|NC_015738|CRISPRCasFinder,CRT
ACGATATCGGCATCACGGAGCGCAACGGCA
>8.10|2680258|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
TCTGCTGCCGTCTTCCGGGCTATTCGATTA
>8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
TCTCCAACGCCTGATGCAAACTTCGATCCG
>8.12|2680390|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
TGAGAGGATCTGCTGCGGAACGACATTCAT
>8.13|2680456|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR
AGGAGTAGATTCATGAACTATAAAGAGTT
>8.14|2680521|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
GAAACCACCGCTTTTTGGTGCTTTTCGCTA
>8.15|2680587|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
GCAACACTGCGGTGCGATTTGACTTGGCCG
>8.16|2680653|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CTGCCGGTGCTTTTATCACGTCATATGCA
>8.17|2680718|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
GAGCTCGACGGTGCTGGCGTGTTCATCGGA
>8.18|2680784|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CACGCGCGGTAGATGAGCTAGTGGTAGTT
>8.19|2680849|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CTGACTTGTTCGTTGGATACGCCGAACAA
>8.20|2680914|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CCACACTATCACGACTAGAAAGTTCGCGAA
>8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR
TAAAGATAATCCGTTTATTGCTGTAGTGA
>8.22|2681045|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CGGTATCGCATACTCTGGGCGCTTCCTCA
>8.23|2681110|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
GCTGACTGAATTTGTTCGATCAATTGCACG
>8.24|2681176|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR
TCCGGTTCGTACACCAAGAATATTGTCAG
>8.25|2681241|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
GATAACTGCTTTTTACATAGACCAAGACCA
>8.26|2681307|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
TCAATGAGCGCGCGGGCTGCTACGACGTTG
>8.27|2681373|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
GGCTCGTCATCGCTCCACCACCTTCGCCCG
>8.28|2681439|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CGGGGCTCGGCGACACCGTTCGTGGTGTGT
>8.29|2681505|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
AGCTTGTCAGCCCACGCATTCATCGACTCT
>8.30|2681571|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
GATCCAACGCCCCGGAGTAGACGCGCGTGC
>8.31|2681637|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR
TTGTCAGTCAACAATACAAGCACGTAGAG
>8.32|2681702|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CATGGCGTACTTGCAAGGCATGCAATGGCG
>8.33|2681768|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
TGCGTCTAGTATTCCTATCACAGTTACACT
>8.34|2681834|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CGTTGATTACAGATGCGGTGCGCTGCATCA
>8.35|2681900|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CGCCGAGTGCTACGGCAAGTTTAAAGCGCT
>8.36|2681966|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CTTCGCAGGCTTTTATGGCACTCTTTCCG
>8.37|2682031|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR
TCGGCGTAACCGATAAGTACGTTTTACTT
>8.38|2682096|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CTGGCTCATTCGGGTTGCAACGAATGTCTG
>8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
CGGGCGAGGAGATCAAGAAGACCGTCAAGA
>8.40|2682228|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR
TAAAGTCCGCCCTGCCACGTCGTGAACGAC
>8.41|2682294|29|NC_015738|CRISPRCasFinder,CRT
TCGTCCATGTACACGTCCGCATACACCTT
>8.42|2682359|30|NC_015738|CRISPRCasFinder,CRT
CCGGCACCACGACTGACCTTCCGGTCACCA
>8.43|2682425|30|NC_015738|CRISPRCasFinder,CRT
ACTTTTCATGCACATCGAGCAGAATCGAAA
>8.44|2682294|161|NC_015738|PILER-CR
TCGTCCATGTACACGTCCGCATACACCTTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCCGGCACCACGACTGACCTTCCGGTCACCAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACACTTTTCATGCACATCGAGCAGAATCGAAA
>8.45|2682360|29|NC_015738|PILER-CR
CCGGCACCACGACTGACCTTCCGGTCACC
>8.46|2682426|29|NC_015738|PILER-CR
ACTTTTCATGCACATCGAGCAGAATCGAA

CRISPR arrays and Neighbor proteins around NC_015738_8

CRISPR arrays

The CRISPR arrays of NC_015738_8

>merge|NC_015738|8|2679629-2682490|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTGTCAGCACGTCCTACAAGGACTGGGAAGGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCAGGCTGTTCTCGCTCAGGCTGACGCGGCTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTTCGAAGCGAGCATGGCTCACTTATGTTCAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACAGTTGCAAGCATGGTATGTGATCTTCCTTAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACACCTGCTTGGGGGTAAGGTGCGGCTGCTCTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACGGTAGTTTCTCGAGGCGGCATGCCTGGGAAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCGTGGATTGATACGTGCCATCATGCACTCGTTTGACTACCAGTCAGAATTCCACTACTCCAAAACCGACCCTCGGCGGTCTTGGCCGATTCCTCGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACACGATATCGGCATCACGGAGCGCAACGGCAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTCTGCTGCCGTCTTCCGGGCTATTCGATTAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTCTCCAACGCCTGATGCAAACTTCGATCCGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTGAGAGGATCTGCTGCGGAACGACATTCATGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACAGGAGTAGATTCATGAACTATAAAGAGTTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACGAAACCACCGCTTTTTGGTGCTTTTCGCTAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACGCAACACTGCGGTGCGATTTGACTTGGCCGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCTGCCGGTGCTTTTATCACGTCATATGCAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACGAGCTCGACGGTGCTGGCGTGTTCATCGGAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCACGCGCGGTAGATGAGCTAGTGGTAGTTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCTGACTTGTTCGTTGGATACGCCGAACAAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCCACACTATCACGACTAGAAAGTTCGCGAAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTAAAGATAATCCGTTTATTGCTGTAGTGAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCGGTATCGCATACTCTGGGCGCTTCCTCAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACGCTGACTGAATTTGTTCGATCAATTGCACGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTCCGGTTCGTACACCAAGAATATTGTCAGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACGATAACTGCTTTTTACATAGACCAAGACCAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTCAATGAGCGCGCGGGCTGCTACGACGTTGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACGGCTCGTCATCGCTCCACCACCTTCGCCCGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCGGGGCTCGGCGACACCGTTCGTGGTGTGTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACAGCTTGTCAGCCCACGCATTCATCGACTCTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACGATCCAACGCCCCGGAGTAGACGCGCGTGCGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTTGTCAGTCAACAATACAAGCACGTAGAGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCATGGCGTACTTGCAAGGCATGCAATGGCGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTGCGTCTAGTATTCCTATCACAGTTACACTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCGTTGATTACAGATGCGGTGCGCTGCATCAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCGCCGAGTGCTACGGCAAGTTTAAAGCGCTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCTTCGCAGGCTTTTATGGCACTCTTTCCGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTCGGCGTAACCGATAAGTACGTTTTACTTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCTGGCTCATTCGGGTTGCAACGAATGTCTGGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCGGGCGAGGAGATCAAGAAGACCGTCAAGAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTAAAGTCCGCCCTGCCACGTCGTGAACGACGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACTCGTCCATGTACACGTCCGCATACACCTTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCCGGCACCACGACTGACCTTCCGGTCACCAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACACTTTTCATGCACATCGAGCAGAATCGAAAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC

>NC_015738|8|8|2679629-2682490|CRISPRCasFinder
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TGTCAGCACGTCCTACAAGGACTGGGAAGG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CAGGCTGTTCTCGCTCAGGCTGACGCGGCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TTCGAAGCGAGCATGGCTCACTTATGTTCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGTTGCAAGCATGGTATGTGATCTTCCTTA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	ACCTGCTTGGGGGTAAGGTGCGGCTGCTCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GGTAGTTTCTCGAGGCGGCATGCCTGGGAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGTGGATTGATACGTGCCATCATGCACTC
GTTTGACTACCAGTCAGAATTCCACTACTCCAAAAC	CGACCCTCGGCGGTCTTGGCCGATTCCTCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	ACGATATCGGCATCACGGAGCGCAACGGCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCTGCTGCCGTCTTCCGGGCTATTCGATTA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCTCCAACGCCTGATGCAAACTTCGATCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TGAGAGGATCTGCTGCGGAACGACATTCAT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGGAGTAGATTCATGAACTATAAAGAGTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GAAACCACCGCTTTTTGGTGCTTTTCGCTA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GCAACACTGCGGTGCGATTTGACTTGGCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGCCGGTGCTTTTATCACGTCATATGCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GAGCTCGACGGTGCTGGCGTGTTCATCGGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CACGCGCGGTAGATGAGCTAGTGGTAGTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGACTTGTTCGTTGGATACGCCGAACAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CCACACTATCACGACTAGAAAGTTCGCGAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TAAAGATAATCCGTTTATTGCTGTAGTGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGTATCGCATACTCTGGGCGCTTCCTCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GCTGACTGAATTTGTTCGATCAATTGCACG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCCGGTTCGTACACCAAGAATATTGTCAG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GATAACTGCTTTTTACATAGACCAAGACCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCAATGAGCGCGCGGGCTGCTACGACGTTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GGCTCGTCATCGCTCCACCACCTTCGCCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGGGCTCGGCGACACCGTTCGTGGTGTGT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGCTTGTCAGCCCACGCATTCATCGACTCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GATCCAACGCCCCGGAGTAGACGCGCGTGC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TTGTCAGTCAACAATACAAGCACGTAGAG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CATGGCGTACTTGCAAGGCATGCAATGGCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TGCGTCTAGTATTCCTATCACAGTTACACT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGTTGATTACAGATGCGGTGCGCTGCATCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGCCGAGTGCTACGGCAAGTTTAAAGCGCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTTCGCAGGCTTTTATGGCACTCTTTCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCGGCGTAACCGATAAGTACGTTTTACTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGGCTCATTCGGGTTGCAACGAATGTCTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGGCGAGGAGATCAAGAAGACCGTCAAGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TAAAGTCCGCCCTGCCACGTCGTGAACGAC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCGTCCATGTACACGTCCGCATACACCTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CCGGCACCACGACTGACCTTCCGGTCACCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	ACTTTTCATGCACATCGAGCAGAATCGAAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC

>NC_015738|8|3|2679629-2682490|CRT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TGTCAGCACGTCCTACAAGGACTGGGAAGG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CAGGCTGTTCTCGCTCAGGCTGACGCGGCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TTCGAAGCGAGCATGGCTCACTTATGTTCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGTTGCAAGCATGGTATGTGATCTTCCTTA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	ACCTGCTTGGGGGTAAGGTGCGGCTGCTCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GGTAGTTTCTCGAGGCGGCATGCCTGGGAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGTGGATTGATACGTGCCATCATGCACTC
GTTTGACTACCAGTCAGAATTCCACTACTCCAAAAC	CGACCCTCGGCGGTCTTGGCCGATTCCTCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	ACGATATCGGCATCACGGAGCGCAACGGCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCTGCTGCCGTCTTCCGGGCTATTCGATTA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCTCCAACGCCTGATGCAAACTTCGATCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TGAGAGGATCTGCTGCGGAACGACATTCAT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGGAGTAGATTCATGAACTATAAAGAGTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GAAACCACCGCTTTTTGGTGCTTTTCGCTA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GCAACACTGCGGTGCGATTTGACTTGGCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGCCGGTGCTTTTATCACGTCATATGCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GAGCTCGACGGTGCTGGCGTGTTCATCGGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CACGCGCGGTAGATGAGCTAGTGGTAGTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGACTTGTTCGTTGGATACGCCGAACAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CCACACTATCACGACTAGAAAGTTCGCGAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TAAAGATAATCCGTTTATTGCTGTAGTGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGTATCGCATACTCTGGGCGCTTCCTCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GCTGACTGAATTTGTTCGATCAATTGCACG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCCGGTTCGTACACCAAGAATATTGTCAG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GATAACTGCTTTTTACATAGACCAAGACCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCAATGAGCGCGCGGGCTGCTACGACGTTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GGCTCGTCATCGCTCCACCACCTTCGCCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGGGCTCGGCGACACCGTTCGTGGTGTGT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGCTTGTCAGCCCACGCATTCATCGACTCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GATCCAACGCCCCGGAGTAGACGCGCGTGC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TTGTCAGTCAACAATACAAGCACGTAGAG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CATGGCGTACTTGCAAGGCATGCAATGGCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TGCGTCTAGTATTCCTATCACAGTTACACT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGTTGATTACAGATGCGGTGCGCTGCATCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGCCGAGTGCTACGGCAAGTTTAAAGCGCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTTCGCAGGCTTTTATGGCACTCTTTCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCGGCGTAACCGATAAGTACGTTTTACTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGGCTCATTCGGGTTGCAACGAATGTCTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGGCGAGGAGATCAAGAAGACCGTCAAGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TAAAGTCCGCCCTGCCACGTCGTGAACGAC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCGTCCATGTACACGTCCGCATACACCTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CCGGCACCACGACTGACCTTCCGGTCACCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	ACTTTTCATGCACATCGAGCAGAATCGAAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC

>NC_015738|8|3|2680222-2682490|PILER-CR
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCTGCTGCCGTCTTCCGGGCTATTCGATTA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCTCCAACGCCTGATGCAAACTTCGATCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TGAGAGGATCTGCTGCGGAACGACATTCAT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGGAGTAGATTCATGAACTATAAAGAGTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GAAACCACCGCTTTTTGGTGCTTTTCGCTA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GCAACACTGCGGTGCGATTTGACTTGGCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGCCGGTGCTTTTATCACGTCATATGCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GAGCTCGACGGTGCTGGCGTGTTCATCGGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CACGCGCGGTAGATGAGCTAGTGGTAGTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGACTTGTTCGTTGGATACGCCGAACAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CCACACTATCACGACTAGAAAGTTCGCGAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TAAAGATAATCCGTTTATTGCTGTAGTGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGTATCGCATACTCTGGGCGCTTCCTCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GCTGACTGAATTTGTTCGATCAATTGCACG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCCGGTTCGTACACCAAGAATATTGTCAG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GATAACTGCTTTTTACATAGACCAAGACCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCAATGAGCGCGCGGGCTGCTACGACGTTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GGCTCGTCATCGCTCCACCACCTTCGCCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGGGCTCGGCGACACCGTTCGTGGTGTGT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGCTTGTCAGCCCACGCATTCATCGACTCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GATCCAACGCCCCGGAGTAGACGCGCGTGC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TTGTCAGTCAACAATACAAGCACGTAGAG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CATGGCGTACTTGCAAGGCATGCAATGGCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TGCGTCTAGTATTCCTATCACAGTTACACT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGTTGATTACAGATGCGGTGCGCTGCATCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGCCGAGTGCTACGGCAAGTTTAAAGCGCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTTCGCAGGCTTTTATGGCACTCTTTCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCGGCGTAACCGATAAGTACGTTTTACTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGGCTCATTCGGGTTGCAACGAATGTCTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGGCGAGGAGATCAAGAAGACCGTCAAGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TAAAGTCCGCCCTGCCACGTCGTGAACGAC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCGTCCATGTACACGTCCGCATACACCTTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCCGGCACCACGACTGACCTTCCGGTCACCAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACACTTTTCATGCACATCGAGCAGAATCGAAA
	CGGCACCACGACTGACCTTCCGGTCACCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACA	CTTTTCATGCACATCGAGCAGAATCGAAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC

>NC_015738|8|4|2682323-2682490|PILER-CR
	TCTGCTGCCGTCTTCCGGGCTATTCGATTA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCTCCAACGCCTGATGCAAACTTCGATCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TGAGAGGATCTGCTGCGGAACGACATTCAT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGGAGTAGATTCATGAACTATAAAGAGTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GAAACCACCGCTTTTTGGTGCTTTTCGCTA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GCAACACTGCGGTGCGATTTGACTTGGCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGCCGGTGCTTTTATCACGTCATATGCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GAGCTCGACGGTGCTGGCGTGTTCATCGGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CACGCGCGGTAGATGAGCTAGTGGTAGTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGACTTGTTCGTTGGATACGCCGAACAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CCACACTATCACGACTAGAAAGTTCGCGAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TAAAGATAATCCGTTTATTGCTGTAGTGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGTATCGCATACTCTGGGCGCTTCCTCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GCTGACTGAATTTGTTCGATCAATTGCACG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCCGGTTCGTACACCAAGAATATTGTCAG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GATAACTGCTTTTTACATAGACCAAGACCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCAATGAGCGCGCGGGCTGCTACGACGTTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GGCTCGTCATCGCTCCACCACCTTCGCCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGGGCTCGGCGACACCGTTCGTGGTGTGT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	AGCTTGTCAGCCCACGCATTCATCGACTCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	GATCCAACGCCCCGGAGTAGACGCGCGTGC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TTGTCAGTCAACAATACAAGCACGTAGAG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CATGGCGTACTTGCAAGGCATGCAATGGCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TGCGTCTAGTATTCCTATCACAGTTACACT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGTTGATTACAGATGCGGTGCGCTGCATCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGCCGAGTGCTACGGCAAGTTTAAAGCGCT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTTCGCAGGCTTTTATGGCACTCTTTCCG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCGGCGTAACCGATAAGTACGTTTTACTT
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CTGGCTCATTCGGGTTGCAACGAATGTCTG
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	CGGGCGAGGAGATCAAGAAGACCGTCAAGA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TAAAGTCCGCCCTGCCACGTCGTGAACGAC
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC	TCGTCCATGTACACGTCCGCATACACCTTGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACCCGGCACCACGACTGACCTTCCGGTCACCAGTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACACTTTTCATGCACATCGAGCAGAATCGAAA
	CGGCACCACGACTGACCTTCCGGTCACCA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAACA	CTTTTCATGCACATCGAGCAGAATCGAAA
GTTTGACTACCAGTCAGAATTCCACTGCTCCAAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_015738.1|WP_013980830.1|2688864_2689803_-|TfoX/Sxy-family-DNA-transformation-protein	unknown	unknown	gnl|CDD|375901
NC_015738.1|WP_070097587.1|2677987_2678719_+|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_151197489.1|2676038_2676521_+|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|374653
NC_015738.1|WP_013980832.1|2690318_2691365_+|hypothetical-protein	unknown	unknown	gnl|CDD|378341
NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|274694
NC_015738.1|WP_013980812.1|2671919_2672129_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980825.1|2679000_2679378_+|DUF2513-domain-containing-protein	unknown	unknown	gnl|CDD|378481
NC_015738.1|WP_151197491.1|2676780_2677023_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	gnl|CDD|213407
NC_015738.1|WP_013980836.1|2696001_2697225_-|MFS-transporter	unknown	unknown	gnl|CDD|341035
NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NC_015738.1|WP_013980819.1|2675666_2676002_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl|CDD|374224
NC_015738.1|WP_151197487.1|2673839_2674049_+|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980814.1|2672810_2673560_-|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|372640
NC_015738.1|WP_013980813.1|2672192_2672522_-|hypothetical-protein	unknown	unknown	unknown
NC_015738.1|WP_013980817.1|2674512_2675472_+|HipA-domain-containing-protein	unknown	unknown	gnl|CDD|341491
NC_015738.1|WP_013980834.1|2692583_2693540_+|2-hydroxyglutaryl-CoA-dehydratase	unknown	unknown	gnl|CDD|224835
NC_015738.1|WP_013980833.1|2691357_2692584_+|hypothetical-protein	unknown	unknown	gnl|CDD|226109
NC_015738.1|WP_083833141.1|2693914_2695936_+|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl|CDD|226482

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	2.5e-37	122.4	0.4
NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	2.2e-86	284.1	0.0
NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	1.4e-271	899.1	0.0
NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	1.8e-76	251.2	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_015738.1|WP_013980830.1|2688864_2689803_-|TfoX/Sxy-family-DNA-transformation-protein	gnl|CDD|375901	pfam18475, PIN7, PIN domain. This is a bacterial PIN-like domain of unknown function.	1.34654e-14
NC_015738.1|WP_013980832.1|2690318_2691365_+|hypothetical-protein	gnl|CDD|378341	pfam09989, DUF2229, CoA enzyme activase uncharacterized domain (DUF2229). Members of this family include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.	1.5735e-57
NC_015738.1|WP_013980833.1|2691357_2692584_+|hypothetical-protein	gnl|CDD|226109	COG3581, COG3581, Uncharacterized protein conserved in bacteria [Function unknown].	2.32096e-18
NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	3.1354e-119
NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.51966e-97
NC_015738.1|WP_013980825.1|2679000_2679378_+|DUF2513-domain-containing-protein	gnl|CDD|378481	pfam10711, DUF2513, Hypothetical protein (DUF2513). This family is found in bacteria. The function is not known.	3.92783e-28
NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2	gnl|CDD|213407	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.00671e-81
NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.01255e-32
NC_015738.1|WP_013980817.1|2674512_2675472_+|HipA-domain-containing-protein	gnl|CDD|341491	cd17792, CtkA, serine/threonine-protein kinase CtkA and similar proteins. The Helicobacter pylori serine/threonine-protein kinase CtkA (proinflammatory kinase), encoded by the jhp940 gene, has been shown to be secreted by the bacterium and to induce cytokines in gastric epithelial cells. It may play a role in chronic gastric inflammation. CtkA autophosphorylates itself at a threonine residue near the N-terminus and it translocates into cultured human cells. It also enhances phosphorylation of the NF-kappaB p65 subunit at Ser276 in human epithelial cancer cells; phosphorylation at this position is known to activate the transcriptional activity of NF-kappaB.	3.69855e-129
NC_015738.1|WP_083833141.1|2693914_2695936_+|UvrD-helicase-domain-containing-protein	gnl|CDD|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	6.77045e-73
NC_015738.1|WP_013980814.1|2672810_2673560_-|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	gnl|CDD|372640	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	4.52022e-08
NC_015738.1|WP_013980819.1|2675666_2676002_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl|CDD|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.72237e-10
NC_015738.1|WP_013980834.1|2692583_2693540_+|2-hydroxyglutaryl-CoA-dehydratase	gnl|CDD|224835	COG1924, COG1924, Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism].	1.63788e-96
NC_015738.1|WP_013980836.1|2696001_2697225_-|MFS-transporter	gnl|CDD|341035	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis MFS-type transporter YxiO, and similar proteins including Listeria monocytogenes BtlA. The function of B. subtilis YxiO is still unknown, and L. monocytogenes BtlA is a putative secondary transporter involved in bile tolerance and general stress resistance. This family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.25233e-126

Protein sequences

>NC_015738.1|WP_013980825.1|2679000_2679378_+|DUF2513-domain-containing-protein
MKRDMNLVRTLLIEIEGADSQIIFTDASIDGYTLNDIAFHIELMDSHGLLFGANTQYTSSGRAVNATVEGLSWDGFDYLDAIRSPKVWSKASNAIRDTVGETSLGVIKDVCSTLAASLIKANLGI
>NC_015738.1|WP_070097587.1|2677987_2678719_+|hypothetical-protein
MPDFTGKTVVEGYDAEALLDQYKSARKAVEAMFSEKDWTYLDSKLKTKLIVRELKRQMDDSAMREISGGLGGGIGNRWFKNYQNEVFSVTKNGETLFEKEGDQKSVDLTDIELAKIKDCDISHTHTTPVGGTFSSEDIEVTVVGWVLSHTVTATVTHESYRLERTDKATKDTGNRFFKAFSSYERSKREDIRYKIWQSEYESRGIESPLVESDLIRAELELKIALHQWLEEHAEDYGYLYKKL
>NC_015738.1|WP_151197491.1|2676780_2677023_-|hypothetical-protein
MEHVTGFSISKDSLYRLETGKQTPSVNFMIAMNIMLNLSPTDCSMVEMCIPKEWNDLSRLNNSHDFDTEKWNIGLESIPL
>NC_015738.1|WP_151197489.1|2676038_2676521_+|hypothetical-protein
MTKSLNASESLSPSRTASSIAFEHVFFNCLFDYQSEFHCSKTTIFAVAEATLFDQSEFHCSKTQSRKDAAKAFMEAKDAKLVLTAALRKMNANTGRKTTLDKAIDSLSSYPAREAIARRDPSAKYSEGLAVAIEMAYNGEAKNKTFARYILDELKGRLSE
>NC_015738.1|WP_013980819.1|2675666_2676002_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MDYIYEGKIEQVESDWLVTFPAFPGCFGGGETLGKACENAAEALRLFIADAIDNGKRLPLPKFSKPPQAVFVVEVADEYIAKTKCTTVSEAAQETRCVARSHQSDAHQRSA
>NC_015738.1|WP_013980817.1|2674512_2675472_+|HipA-domain-containing-protein
MDTSVEADIKDLSAYNRAYGSGAYYRGNAGQKYGIIIDGELWLVKFPQSTKEFAGKHLPSYTSSPVSEYIGSKIYESLGIPVHETMLGYRDGKIVVACKDFDPQREFIDFHQIKNTVDEALLASGSRSSSRGSNLEDVLTVLREAKEFTKAEGSLERFWDMFVVDALIRNNDRNDTNWGVLAGQYGTFRLAPVFDNGNCLFNKRNTSLAQLRLENDALLEQDAIGTGVSFFLDNDGNHIHPFDFMLATDNADCKAAVVRVAERLDLNKVREIVESVPEQAFSREVLSREQKDFYKELLETAANKGLYPAADKISSVSLV
>NC_015738.1|WP_151197487.1|2673839_2674049_+|hypothetical-protein
MKVAKTDTLPYGKYGSTIVFLDGKKPHTGWKQVKIGGKEYTPVFMSGFHEDKIALQGIHDLAGMEVEFI
>NC_015738.1|WP_013980814.1|2672810_2673560_-|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein
MAVYQDKAKERIKKNVAKVRSHCNKGKKIHMGEADTRAIVREVLIDCLGWDEFEDVTQEECIKGGYCDYLIRYEGKPYAVVEVKKVSGGLTQDHMRQAKHYAQDKGLDWIILTNGDEWEVYNLYYRKKRGENPEPLTFHLFTTSFTDTENVKPSERIEMLYLLSKEARRKDELAVYHGMLKALSPQELTKRIMQKDVIDRLRISIKNDIGYRIDNDELAFRIAEIIKDEAIPSNISYYIKRLSEPPKRN
>NC_015738.1|WP_013980813.1|2672192_2672522_-|hypothetical-protein
MKFDYDWYKSNRNNREGVWIATACMVVKTFQSDGELYLVATIANDDATLSNHDVLLQATEEVSFDEVIDGDVLAILGTTEEMNQVTIGKSYSEWLPTINVAEMEVAPRQ
>NC_015738.1|WP_013980812.1|2671919_2672129_-|hypothetical-protein
MKIQFVQREDEKIVGRGNIVDVVSTECGWYRIVDDMGDECLVPPSVVEVVEKLPTPPETQPLGIETDEE
>NC_015738.1|WP_013980826.1|2682544_2683228_-|type-II-A-CRISPR-associated-protein-Csn2
MKLVFSGLEKPQYLEPGRVSVLEVENQRLFTRICQSIVSGEGAQAVEPYTLWNNQGKEVKPKTALLPIVNPFELPWTERELLGGLYQRYETMLLEDYEMRDKLSQLTREISSSISLLGFQLASNCEFEIEWDMRRYLKAFGFGVDFDSRDSLLDNVIKFIHLAMDVSLQRALVFVNLKTFLTKNELETLYEQVIFSQIPLLLLENRKDCYCSDYEIKRCVDQYFLET
>NC_015738.1|WP_013980827.1|2683224_2683560_-|CRISPR-associated-endonuclease-Cas2
MSDSIRVRYMRMLVFFDLPVETASQRKEYRLFRKYLIKDGYLMLQESVYAKLVTNEGAASAEIMRLRKHRPPEGLVQVLKVTEKQFATMTYITGNRMPYDELDTMEEFVVL
>NC_015738.1|WP_013980828.1|2683556_2684435_-|type-II-CRISPR-associated-endonuclease-Cas1
MSFRTVFVESPCRCSYQSGYMVVRKEDDTAKIHLSEISSIVLQTQQVFISAYLMAELAKSKISLVISDEKCNPVGQYLPLYGAHNTSKRIGEQLEWGEPIKKRVWQRVVKDKIEQQAQFLDERDYSTEAKILYSIVPEVRSGDTTNREAQAARIYFQALFGTNFSREIDCPLNAALNYGYAVLLSMVNREVVSRGYLTQCGICHRNEYNQFNLTCDFMEPFRVAIDRLVVDCLEGEFDAETRRILGDVSNKGMSYRGGSYRLGSVVSLYVQDCLNALNKKLSPDDIESFRIL
>NC_015738.1|WP_013980829.1|2684424_2688567_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNLRHVGNYNIGLDMGTASVGWAAIDEQGELLHFKGKPTWGSRLFDSANTAATARMPRGQRRRYIRRRWRLDLLQKFFSEEMAEKDPEFFIRLRQSSLWPEDREGGHTAYHWPLFNDSDFNEKEYYEKFPTIFHLRQWLMETDEKADIRLIYLAFHNIVKHRGNFLQENNDSLSAQNANMRESLESFCIALEEWCDEKELTCSCDPQKLEHLFKEVKYRSDIRDGFAALLGLACSGENEVDVKAMAKEMGKAIVGYKADFSKIFTECDKEGSSFRLSDDEGPEAFLDICPDDGIALFEAIQMVYSSFILTGMLTEKGLSLSKISAYNQYGQDLESLKALVKEYVPNEYSSFFRGPTYSGSTEYDPSKAQGYTRYNLGPSKKGSGAKPMAYEDFKKSVEQLFANTNAINDERYKEMMGRFAEEKFLRRLRTSDNGRIPFQLNLEEMTAIIINQGKYYPFLLEQQEKLESLVRFRIPYYVGPLTRINARLDSKGNACFAWSKRKDGMDSASIKPWNWDEVIDKHASAQAFIERMTGTCTYLRGEPVLPRCSLLYEEYCVLNELNGARWTQDGDKFIRFDYKDRSDIIEELFKKRRGRIQYAAVADWMKQERSHANVHVSGGQGENAFESRLSSYHFFCNDVFGVDELPGSYVDMVEEIILWSTLFEDRSILREEIQRKYGDVLNEEQIKTICKKRFSGWGRLSRKLLCSLKAQTDNGPKSIMDILQEGDQNNGRVGRAMVFQEILHDEQLGFEQKIEEENTQSMLEGENLLIEDLPGSPAIRRSINQAVRIVDEIVGIAGHAPDNIFIEVTREDDTKKKGKRTTTRYSNIQKALEALKEEGAEALRELKTYKHNELDKRLSLYFMQNGKSLYSGIPLDIRRLSEYQIDHIIPQSYIKDDSYENMALVLPGENQSKADNLLISQDIRIKMKATWTALHKAGLMGDKKYNNLMNSSISDAKMKGFINRQLVETSQSVKLTQMMLSQKYPGAKVRPIKASISSQLRDACDLVKCREANDYHHAHDAYLACQVGRFVLKRHSSMFDNPIGMTKVIRDFVKRQGQEFKRNGKLPAYASRSGFIVQSFMRSGFDAETGELLRDDWNAPFEIARIKRCLNYRDCYISRMPMEDSGAFWDATIYSPKAGKKGALPVKQGLPVEKYGSYSREQFAYFFVYKAYNPKKKAYRLEFEAVPVRVASAVETRENALEEYAKSVAKQAGLEFVEVARPKVYKYQLIELGEDRLYITGKREVRNASQLAFSLDEIDLLKRLAEGEETSSEERERLFDVLIEKYARYAPRLARQLSVDSMSATFETLNAEEQLGILLSLVEIANGKRNMIDLSSAGGSKNAGCMNPTFSSELSSPGSNFTFIDQSVTGMFERRQRLEL
>NC_015738.1|WP_013980830.1|2688864_2689803_-|TfoX/Sxy-family-DNA-transformation-protein
MIDVTADKHPGKPIRAFFIDSENGAEKLLEGMEFLTRSDTVIVFHRDNFPAELKNRLELGPSAVEWIKCVDRGVKNSMDVQIIAELSMRLVEGGFENGYIVSEDKGYLPAVHYLQRTPKGREHEVALVKDIAHAVMRTIFSSMTKLKHAESVENVEETFAPLYGEGEARVLTGKLEKIFAQLHADSQKDVGAVQCDEGAMSKSLTEGVDQLVDEPTEQKSKSVSFIDMPGIGRALAGKLESAGIASPAELEQIGAVEAWKRIYYLDASFPPKWVYSFEAAIRGVSIRSLDPKRKRRLKSDIRALLIKQKCAA
>NC_015738.1|WP_013980832.1|2690318_2691365_+|hypothetical-protein
MSTLGLRSRAEYRGLQRIGMPRALLYYRYGTMWTTFLQEIGCEVITSDKTDKAIATAGDQLSIDECCLASKVYLGHVESLLDRCDAVFVPSVANLGNHLGFCTKFQALPDLVYNTFRDRNPSLVTYLVDVNAEKAKPHDSLIDLGQRFGVSPREAKRAFKTAYKAQLAADDARARAQDQMLATLHTAPASKTPAASTQGTSSAVSAEQPLAILLVAHPYVAHDAYVGGRVVELLRNLGTTVLFADETDRDRALKASFDFSETMPWIINRELIGSMTLLRPHIDGFVLVSSFPCGPDSMTDDAIMRCIQGRPILNLTIDAQSGTAGLETRVESFVDILRFQKRGGYFHG
>NC_015738.1|WP_013980833.1|2691357_2692584_+|hypothetical-protein
MDDQRKPIDPVTTFLQKVEDVRDARVTMQLDEKHPFALLSKRPKKPERIKRDRHARTRVAFFRYSYYDIAFKYFVEQVLDADYVPLPAPTKRTIELGSANSNDFVCAPFKHILGDYIEALERGANVLVQFAGPCRLGYYGELQESILRDLGYEFDMLNFATCTGKPLQEYVEICKKKINPNVSVPKGVRHMLATFKMIEHLDQLNDFYLENAGFEIEHGSFARTLADTHARLRTATNEREIEDAFTAGISALRALPLRKPADPLRVGIVGEYFTAADPHSNLELERKLLSMGVELHRELNMTNRNLRYNEKNLRASASDYVKFNMGPTSSLTIATALKYAQAGFDGVVHLKSSGCTPEIDCIPVLQRVSRDTGVPMLYLSYDSQTSDTGLDTRLEAFYDMIAMKKVKG
>NC_015738.1|WP_013980834.1|2692583_2693540_+|2-hydroxyglutaryl-CoA-dehydratase
MENAFLGIDTGSISTKGVIIDANRHIIARSYLWTEGDPAHAARRVIDDLAGQIDRSAVQVVGVGTTGSARRLIGAMTGASVVKNEITAHAVGTTYLHPDVRTILEIGGQDSKIICVDGGIAVDYAMNTLCAAGTGAFLSSQAHRLGVEVEEFGDIAATSQKPANIAARCTVFAESDLVHKIQVGYAREDIIAGLCNAVASNYLNNVGKGKRITAPVVFQGGVSKNTGVVRAFERMLGMDVLVDPDGHLMGAFGAALLAADTPTAAEPFDFEAMEHFEFKTREIECSKCANHCEIICVYRDETLIDSWGNRCEKGEVRV
>NC_015738.1|WP_083833141.1|2693914_2695936_+|UvrD-helicase-domain-containing-protein
MEKTSAAAAADKQSMSEELSPDFATYADAMETYADFAAMNRIIDAYNLAQTVDAEKLASIQLLLKQPYFAKVVLQFAPDQDPKELYIGNAGVSDESYKRLVVDWRSPVAEVYYNQDNGPTTYVADGRTIHTDLLLRRQFDVEEDRLNAYFDTTVAIQDALLLASLSKRRTAQMQAITATIQKEQNLVVRHADVPVLLVSGIAGSGKTSVLLQRIAYLFYQQRGTLDPREVFLVTPNPVFRHYIENVLPDLGERNPETLTWDEFASPLLPHGTGSGDANVELDALARIDKAAASFEFDPNDFKDIRIEDVRLISADQVRKVATKFKRIPAGPHRVTLMREELHERLNTRLAQMAGTESVQDEIAALPLEDQLHLFNSPFDPQNEEEARSLALIYVRDRYAAAFQAVEHDDWLRVDRVGMRLLGTDGLTPLEWLYLKMALTGLGNPDAKYVMIDEVQDYTAAQLAVLARYFRRAHFLLLGDLNQAIAENTATFDDVRTVFSAARGSVEECHLMTSYRSTPEITALFARLLSPEERLRISSIQRDDTAPALIACADEHAYETELRRAIEHARNAESLTAVVVPWKHEARRLQTLLGDDAPPLVDTNNTLPERGVILITLKLAKGLEFDQVIVPDASERVFPDTPLARRRLYTTISRATRTITILANGKLTPLLAQR
>NC_015738.1|WP_013980836.1|2696001_2697225_-|MFS-transporter
MAGKLTKQEKSWVMYDVGNSAFVLLATALIPVYFASLAEEGSSVVVAWGYAETVASLLLALLMPVLGSLADLKGNKKKFFIGTVGTGAIALAALGIPSAALAFLVLYVLASIMLNGSMVFYDAFLVDATNDERYDEVSSQGYAWGYIGSCVPFILCLVVVLAGPSVGIPMDIGMKIAFLITAVWWVAFSIPLIRNVHQTHYKERAEHLMRDTFEGLWRTLKRIWKDKRLRLFMLAFFCYIDGVHTIIKMSTSYGTDLGIDATQLVLALLVTQFVAFPSAIAYGRLSSKFGTKRMLLVAIFAYFCITLFAAFFLREAIEFWILAICVGLFQGGIQALSRSEFGKLIPKEHANEYYGFFDIFGKYAAVMGTFLVSIFTQMTGNSSIGVLSIAVLFIIGFVLLARMPEKG

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_015738_8	8.12|2680390|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680390-2680419	30	NC_015738.1	360048-360077	0	1.0
NC_015738_8	8.38|2682096|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682096-2682125	30	NC_015738.1	975245-975274	0	1.0

1. spacer 8.12|2680390|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to position: 360048-360077, mismatch: 0, identity: 1.0

tgagaggatctgctgcggaacgacattcat	CRISPR spacer
tgagaggatctgctgcggaacgacattcat	Protospacer
******************************

2. spacer 8.38|2682096|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to position: 975245-975274, mismatch: 0, identity: 1.0

ctggctcattcgggttgcaacgaatgtctg	CRISPR spacer
ctggctcattcgggttgcaacgaatgtctg	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_015738_6	6.1|2676164|27|NC_015738|CRISPRCasFinder	2676164-2676190	27	NZ_CP020429	Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence	152682-152708	5	0.815
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	MN369765	Microbacterium phage Zanella, complete genome	5312-5341	5	0.833
NC_015738_3	3.1|1375754|27|NC_015738|CRISPRCasFinder	1375754-1375780	27	MT446406	UNVERIFIED: Escherichia virus TH33, complete genome	24352-24378	6	0.778
NC_015738_3	3.1|1375754|27|NC_015738|CRISPRCasFinder	1375754-1375780	27	MT446402	UNVERIFIED: Escherichia virus TH28, complete genome	32480-32506	6	0.778
NC_015738_3	3.1|1375754|27|NC_015738|CRISPRCasFinder	1375754-1375780	27	MT446397	UNVERIFIED: Escherichia virus TH23, complete genome	51007-51033	6	0.778
NC_015738_8	8.6|2679995|30|NC_015738|CRISPRCasFinder,CRT	2679995-2680024	30	NZ_CP042181	Pseudomonas sp. KBS0802 plasmid unnamed, complete sequence	48883-48912	6	0.8
NC_015738_8	8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT	2680126-2680155	30	MT708550	Achromobacter phage Mano, complete genome	20418-20447	6	0.8
NC_015738_8	8.9|2680192|30|NC_015738|CRISPRCasFinder,CRT	2680192-2680221	30	NZ_CP021368	Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence	121990-122019	6	0.8
NC_015738_8	8.9|2680192|30|NC_015738|CRISPRCasFinder,CRT	2680192-2680221	30	NZ_CP021364	Acidovorax carolinensis strain P3 plasmid pACP3.2, complete sequence	141064-141093	6	0.8
NC_015738_8	8.17|2680718|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680718-2680747	30	NC_012523	Rhodococcus opacus B4 plasmid pKNR, complete sequence	21972-22001	6	0.8
NC_015738_8	8.19|2680849|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680849-2680877	29	MF580956	Salinibacter virus M8CC-19, complete genome	36759-36787	6	0.793
NC_015738_8	8.19|2680849|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680849-2680877	29	MF580959	Salinibacter virus M8CRM-1, partial genome	37573-37601	6	0.793
NC_015738_8	8.19|2680849|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680849-2680877	29	MF580960	Salinibacter virus M31CC-1, partial genome	36756-36784	6	0.793
NC_015738_8	8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680980-2681008	29	MK448798	Streptococcus phage Javan533, complete genome	16041-16069	6	0.793
NC_015738_8	8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680980-2681008	29	NC_028700	Streptococcus phage T12, complete genome	15890-15918	6	0.793
NC_015738_8	8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680980-2681008	29	MK448790	Streptococcus phage Javan515, complete genome	15714-15742	6	0.793
NC_015738_8	8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680980-2681008	29	MK448783	Streptococcus phage Javan503, complete genome	15024-15052	6	0.793
NC_015738_8	8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680980-2681008	29	MK448967	Streptococcus phage Javan510, complete genome	16042-16070	6	0.793
NC_015738_8	8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680980-2681008	29	NC_004588	Streptococcus prophage 315.5, complete genome	16191-16219	6	0.793
NC_015738_8	8.24|2681176|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681176-2681204	29	NZ_CP024248	Escherichia coli O27:H7 strain B4103-1 plasmid unnamed3, complete sequence	84289-84317	6	0.793
NC_015738_8	8.24|2681176|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681176-2681204	29	NZ_CP025841	Escherichia coli strain 214-4 plasmid p214_4_132, complete sequence	56981-57009	6	0.793
NC_015738_8	8.27|2681373|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681373-2681402	30	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	863998-864027	6	0.8
NC_015738_8	8.27|2681373|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681373-2681402	30	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	651282-651311	6	0.8
NC_015738_8	8.37|2682031|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682031-2682059	29	KT001915	Citrobacter phage Merlin, complete genome	55780-55808	6	0.793
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP004875	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB95, complete sequence	80789-80818	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NC_017205	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT72, complete sequence	70437-70466	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP015179	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB57, complete sequence	56004-56033	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP015156	Bacillus thuringiensis strain Bc601 plasmid pBTBC6, complete sequence	3568-3597	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP004869	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB67, complete sequence	34567-34596	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	1331001-1331030	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	CP020758	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-19, complete sequence	28836-28865	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP010092	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB126, complete sequence	96453-96482	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP010093	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB71, complete sequence	64348-64377	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP021065	Bacillus thuringiensis strain ATCC 10792 plasmid poh4, complete sequence	52079-52108	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP011358	Bacillus thuringiensis strain YC-10 plasmid pYC2226, complete sequence	16069-16098	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NC_018879	Bacillus thuringiensis Bt407 plasmid BTB_78p, complete sequence	63482-63511	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013057	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-2, complete sequence	13055-13084	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NC_020382	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-68, complete sequence	66502-66531	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1194581-1194610	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	873615-873644	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1497760-1497789	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1194717-1194746	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	923497-923526	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1194243-1194272	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	920334-920363	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	MN234188	Mycobacterium phage Anthony, complete genome	35483-35512	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP020897	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence	246335-246364	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NC_007764	Rhizobium etli CFN 42 plasmid p42c, complete sequence	228008-228037	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013524	Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence	327574-327603	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	324805-324834	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP020908	Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence	227251-227280	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013586	Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence	338863-338892	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2194591-2194620	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	335526-335555	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	336307-336336	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	336303-336332	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013528	Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence	333966-333995	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	336303-336332	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	340563-340592	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	324805-324834	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NC_021907	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence	229776-229805	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013581	Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence	333969-333998	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	336307-336336	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013513	Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence	313123-313152	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	2260895-2260924	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013603	Rhizobium sp. N731 plasmid pRspN731b, complete sequence	313123-313152	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1944179-1944208	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	21409-21438	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	19125-19154	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	2202467-2202496	6	0.8
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	18370-18399	6	0.8
NC_015738_8	8.45|2682360|29|NC_015738|PILER-CR	2682360-2682388	29	MT553342	Microbacterium phage Kelcole, complete genome	56090-56118	6	0.793
NC_015738_8	8.45|2682360|29|NC_015738|PILER-CR	2682360-2682388	29	NC_048068	Microbacterium phage OneinaGillian, complete genome	54998-55026	6	0.793
NC_015738_8	8.45|2682360|29|NC_015738|PILER-CR	2682360-2682388	29	MT310894	Microbacterium phage Tempo, complete genome	56199-56227	6	0.793
NC_015738_5	5.29|2086103|34|NC_015738|CRISPRCasFinder,PILER-CR	2086103-2086136	34	NZ_KU963390	Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence	24586-24619	7	0.794
NC_015738_5	5.29|2086103|34|NC_015738|CRISPRCasFinder,PILER-CR	2086103-2086136	34	NZ_CP010193	Escherichia coli strain M8 plasmid B, complete genome	27533-27566	7	0.794
NC_015738_7	7.1|2677152|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677152-2677181	30	MN096267	Pseudomonas phage vB_PaS_IME307, complete genome	46324-46353	7	0.767
NC_015738_7	7.3|2677284|29|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677284-2677312	29	NZ_CP027299	Streptomyces sp. SGAir0924 plasmid unnamed_5	98719-98747	7	0.759
NC_015738_7	7.3|2677284|29|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677284-2677312	29	NZ_CP050269	Salinivibrio costicola strain M318 plasmid pM138.2, complete sequence	20330-20358	7	0.759
NC_015738_7	7.3|2677284|29|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677284-2677312	29	NZ_CP022569	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence	74673-74701	7	0.759
NC_015738_7	7.3|2677284|29|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677284-2677312	29	NC_031050	Enterobacteria phage vB_EcoS_NBD2, complete genome	35429-35457	7	0.759
NC_015738_7	7.4|2677349|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677349-2677378	30	JN638751	Bacillus phage G, complete genome	18850-18879	7	0.767
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	MT354569	Pseudomonas phage phiK7B1, complete genome	72431-72460	7	0.767
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	850047-850076	7	0.767
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	MG518519	Streptomyces phage Manuel, complete genome	4919-4948	7	0.767
NC_015738_7	7.12|2677876|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677876-2677905	30	MK496752	Capybara microvirus Cap1_SP_228, complete genome	3234-3263	7	0.767
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	MT354569	Pseudomonas phage phiK7B1, complete genome	72431-72460	7	0.767
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	850047-850076	7	0.767
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	MG518519	Streptomyces phage Manuel, complete genome	4919-4948	7	0.767
NC_015738_8	8.4|2679863|30|NC_015738|CRISPRCasFinder,CRT	2679863-2679892	30	LR721753	Aliivibrio wodanis 06/09/160 plasmid 2 complete sequence	91694-91723	7	0.767
NC_015738_8	8.6|2679995|30|NC_015738|CRISPRCasFinder,CRT	2679995-2680024	30	NZ_CP039632	Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence	88021-88050	7	0.767
NC_015738_8	8.6|2679995|30|NC_015738|CRISPRCasFinder,CRT	2679995-2680024	30	NZ_CP007510	Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid	73873-73902	7	0.767
NC_015738_8	8.6|2679995|30|NC_015738|CRISPRCasFinder,CRT	2679995-2680024	30	NZ_AP015030	Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence	44285-44314	7	0.767
NC_015738_8	8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT	2680126-2680155	30	NZ_CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	207171-207200	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019095	Synechococcus phage ACG-2014f isolate Syn7803US34, complete genome	170488-170517	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019086	Synechococcus phage ACG-2014f isolate Syn7803US17, complete genome	171108-171137	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019143	Synechococcus phage ACG-2014f isolate Syn7803C12, complete genome	168272-168301	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019102	Synechococcus phage ACG-2014f isolate Syn7803US43, complete genome	169732-169761	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019066	Synechococcus phage ACG-2014f isolate Syn7803C9, complete genome	170992-171021	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019142	Synechococcus phage ACG-2014f isolate Syn7803C11, complete genome	166204-166233	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019105	Synechococcus phage ACG-2014f isolate Syn7803US4, complete genome	167062-167091	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019159	Synechococcus phage ACG-2014f isolate Syn7803C34, complete genome	169893-169922	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019111	Synechococcus phage ACG-2014f isolate Syn7803US57, complete genome	165554-165583	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019090	Synechococcus phage ACG-2014f isolate Syn7803US24, complete genome	169879-169908	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019152	Synechococcus phage ACG-2014f isolate Syn7803C25, complete genome	169587-169616	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019151	Synechococcus phage ACG-2014f isolate Syn7803C24, complete genome	169343-169372	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019150	Synechococcus phage ACG-2014f isolate Syn7803C22, complete genome	171406-171435	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019097	Synechococcus phage ACG-2014f isolate Syn7803US37, complete genome	171925-171954	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019037	Synechococcus phage ACG-2014f isolate Syn7803C58, complete genome	170017-170046	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019099	Synechococcus phage ACG-2014f isolate Syn7803US3, complete genome	170335-170364	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019155	Synechococcus phage ACG-2014f isolate Syn7803C29, complete genome	165590-165619	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019085	Synechococcus phage ACG-2014f isolate Syn7803US13, complete genome	165351-165380	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019096	Synechococcus phage ACG-2014f isolate Syn7803US36, complete genome	170619-170648	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019091	Synechococcus phage ACG-2014f isolate Syn7803US26, complete genome	165520-165549	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019144	Synechococcus phage ACG-2014f isolate Syn7803C14, complete genome	165549-165578	7	0.767
NC_015738_8	8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680324-2680353	30	KJ019145	Synechococcus phage ACG-2014f isolate Syn7803C15, complete genome	170013-170042	7	0.767
NC_015738_8	8.13|2680456|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680456-2680484	29	MH617035	Microviridae sp. isolate ctcj515, complete genome	2135-2163	7	0.759
NC_015738_8	8.13|2680456|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680456-2680484	29	MT074138	Bacteroides phage DAC17, complete genome	95166-95194	7	0.759
NC_015738_8	8.13|2680456|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680456-2680484	29	MT074136	Bacteroides phage DAC15, complete genome	95757-95785	7	0.759
NC_015738_8	8.14|2680521|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680521-2680550	30	MN693895	Marine virus AFVG_250M461, complete genome	36146-36175	7	0.767
NC_015738_8	8.17|2680718|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680718-2680747	30	NC_018582	Gordonia sp. KTR9 plasmid pGKT1, complete sequence	61387-61416	7	0.767
NC_015738_8	8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680980-2681008	29	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	786896-786924	7	0.759
NC_015738_8	8.23|2681110|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681110-2681139	30	KY296500	Xenohaliotis phage pCXc-HC2016, complete genome	21020-21049	7	0.767
NC_015738_8	8.23|2681110|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681110-2681139	30	KY296501	Xenohaliotis phage pCXc-HR2015, complete genome	21018-21047	7	0.767
NC_015738_8	8.36|2681966|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681966-2681994	29	MG945709	UNVERIFIED: Microviridae sp. isolate 1866-1801, complete genome	4277-4305	7	0.759
NC_015738_8	8.37|2682031|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682031-2682059	29	NC_019329	Sulfitobacter sp. DFL14 plasmid pDFL14-10, complete sequence	8064-8092	7	0.759
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	534990-535019	7	0.767
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	146956-146985	7	0.767
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP021084	Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence	148838-148867	7	0.767
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	959252-959281	7	0.767
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	920388-920417	7	0.767
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NC_018488	Bacillus thuringiensis HD-771 plasmid p04, complete sequence	49047-49076	7	0.767
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	MN062186	Stenotrophomonas phage Pokken, complete genome	28353-28382	7	0.767
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP014964	Geobacter anodireducens strain SD-1 plasmid pSD, complete sequence	100667-100696	7	0.767
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	2280962-2280991	7	0.767
NC_015738_8	8.42|2682359|30|NC_015738|CRISPRCasFinder,CRT	2682359-2682388	30	MT553342	Microbacterium phage Kelcole, complete genome	56089-56118	7	0.767
NC_015738_8	8.42|2682359|30|NC_015738|CRISPRCasFinder,CRT	2682359-2682388	30	NC_048068	Microbacterium phage OneinaGillian, complete genome	54997-55026	7	0.767
NC_015738_8	8.42|2682359|30|NC_015738|CRISPRCasFinder,CRT	2682359-2682388	30	MT310894	Microbacterium phage Tempo, complete genome	56198-56227	7	0.767
NC_015738_5	5.29|2086103|34|NC_015738|CRISPRCasFinder,PILER-CR	2086103-2086136	34	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	2682-2715	8	0.765
NC_015738_5	5.29|2086103|34|NC_015738|CRISPRCasFinder,PILER-CR	2086103-2086136	34	DQ003642	Listeria phage A006, complete genome	18459-18492	8	0.765
NC_015738_5	5.32|2086302|33|NC_015738|CRISPRCasFinder,PILER-CR	2086302-2086334	33	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	881365-881397	8	0.758
NC_015738_7	7.1|2677152|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677152-2677181	30	CP054934	Nocardiopsis flavescens strain NA01583 plasmid unnamed1, complete sequence	173729-173758	8	0.733
NC_015738_7	7.1|2677152|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677152-2677181	30	NZ_CP020443	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence	121094-121123	8	0.733
NC_015738_7	7.2|2677218|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677218-2677247	30	NZ_CP031226	Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence	690819-690848	8	0.733
NC_015738_7	7.5|2677415|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677415-2677444	30	NC_015169	Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence	241062-241091	8	0.733
NC_015738_7	7.9|2677678|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677678-2677707	30	NZ_CP033894	Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence	84289-84318	8	0.733
NC_015738_7	7.9|2677678|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677678-2677707	30	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1050421-1050450	8	0.733
NC_015738_7	7.9|2677678|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677678-2677707	30	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	278210-278239	8	0.733
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	MW149097	Microvirus sp. isolate gila5, complete genome	3284-3313	8	0.733
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_CP016619	Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence	646586-646615	8	0.733
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_CP016619	Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence	647837-647866	8	0.733
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	MW149097	Microvirus sp. isolate gila5, complete genome	3284-3313	8	0.733
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_CP016619	Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence	646586-646615	8	0.733
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_CP016619	Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence	647837-647866	8	0.733
NC_015738_8	8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT	2680126-2680155	30	NZ_CP023712	Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence	121586-121615	8	0.733
NC_015738_8	8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT	2680126-2680155	30	MH834621	Arthrobacter phage Nandita, complete genome	10079-10108	8	0.733
NC_015738_8	8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT	2680126-2680155	30	MH834627	Arthrobacter phage Ryan, complete genome	10225-10254	8	0.733
NC_015738_8	8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT	2680126-2680155	30	KY176369	Salmonella phage STP03, complete genome	8196-8225	8	0.733
NC_015738_8	8.9|2680192|30|NC_015738|CRISPRCasFinder,CRT	2680192-2680221	30	NZ_CP035384	Klebsiella pneumoniae strain AP8555 plasmid pAP855, complete sequence	23534-23563	8	0.733
NC_015738_8	8.12|2680390|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680390-2680419	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	948924-948953	8	0.733
NC_015738_8	8.29|2681505|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681505-2681534	30	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1456405-1456434	8	0.733
NC_015738_8	8.29|2681505|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681505-2681534	30	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	954550-954579	8	0.733
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	MK875791	Gordonia phage Yakult, complete genome	9857-9886	8	0.733
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_LN831788	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence	70027-70056	8	0.733
NC_015738_8	8.40|2682228|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682228-2682257	30	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	227865-227894	8	0.733
NC_015738_7	7.4|2677349|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677349-2677378	30	MT647606	Pelagibacter phage Mosig EXVC030M, partial genome	141348-141377	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_KY000052	Agrobacterium tumefaciens strain CFBP7000 plasmid pTi_CFBP7000, complete sequence	138979-139008	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_KY000049	Agrobacterium rhizogenes strain CFBP4423 plasmid pTi_CFBP4423, complete sequence	86965-86994	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_KY000055	Agrobacterium rubi strain Tun159 plasmid pTi_Tun159, complete sequence	167671-167700	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_KY000048	Agrobacterium rhizogenes strain CFBP2746 plasmid pTi_CFBP2746, complete sequence	6481-6510	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_KY000053	Agrobacterium genomosp. 1 strain DC12-001 plasmid pTi_DC12-001, complete sequence	86829-86858	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_KY000054	Agrobacterium tumefaciens strain Tun154 plasmid pTi_Tun154, complete sequence	103730-103759	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	KY000034	Agrobacterium sp. strain C58PMP90 plasmid pTi_C58PMP90, complete sequence	25183-25212	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	KY000036	Agrobacterium sp. strain GV3101 plasmid pTi_GV3101, complete sequence	26448-26477	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_CP032929	Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence	5456-5485	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_CP039926	Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129c, complete sequence	5546-5575	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_CP033033	Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence	5588-5617	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_CP030831	Neorhizobium sp. NCHU2750 plasmid pTiNCHU2750, complete sequence	61589-61618	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NC_003065	Agrobacterium fabrum str. C58 plasmid Ti, complete sequence	58048-58077	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_MK439382	Agrobacterium tumefaciens strain CFBP2178 plasmid pTiCFBP2178, complete sequence	57538-57567	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_MK439383	Agrobacterium tumefaciens strain CFBP1935 plasmid pTiCFBP1935, complete sequence	57538-57567	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_MK318973	Agrobacterium rhizogenes strain Colt5.8 plasmid pOC-Colt5.8, complete sequence	5568-5597	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_MK318986	Agrobacterium rhizogenes strain C6.5 plasmid pTiC6.5, complete sequence	5835-5864	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_MK439385	Agrobacterium tumefaciens strain Kerr27 plasmid pTiKerr27, complete sequence	72840-72869	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_MK439384	Agrobacterium tumefaciens strain Kerr108 plasmid pTiKerr108, complete sequence	59432-59461	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_MK439381	Agrobacterium tumefaciens strain Sule1 plasmid pTiSule1, complete sequence	57538-57567	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_MF511177	Agrobacterium rhizogenes strain C5.7 plasmid pTiC5.7, complete sequence	5835-5864	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_KY000068	Agrobacterium deltaense strain Tun151 plasmid pTi_Tun151, complete sequence	45388-45417	9	0.7
NC_015738_7	7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT	2677744-2677773	30	NZ_KY000051	Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence	76412-76441	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_KY000052	Agrobacterium tumefaciens strain CFBP7000 plasmid pTi_CFBP7000, complete sequence	138979-139008	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_KY000049	Agrobacterium rhizogenes strain CFBP4423 plasmid pTi_CFBP4423, complete sequence	86965-86994	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_KY000055	Agrobacterium rubi strain Tun159 plasmid pTi_Tun159, complete sequence	167671-167700	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_KY000048	Agrobacterium rhizogenes strain CFBP2746 plasmid pTi_CFBP2746, complete sequence	6481-6510	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_KY000053	Agrobacterium genomosp. 1 strain DC12-001 plasmid pTi_DC12-001, complete sequence	86829-86858	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_KY000054	Agrobacterium tumefaciens strain Tun154 plasmid pTi_Tun154, complete sequence	103730-103759	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	KY000034	Agrobacterium sp. strain C58PMP90 plasmid pTi_C58PMP90, complete sequence	25183-25212	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	KY000036	Agrobacterium sp. strain GV3101 plasmid pTi_GV3101, complete sequence	26448-26477	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_CP032929	Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence	5456-5485	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_CP039926	Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129c, complete sequence	5546-5575	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_CP033033	Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence	5588-5617	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_CP030831	Neorhizobium sp. NCHU2750 plasmid pTiNCHU2750, complete sequence	61589-61618	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NC_003065	Agrobacterium fabrum str. C58 plasmid Ti, complete sequence	58048-58077	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_MK439382	Agrobacterium tumefaciens strain CFBP2178 plasmid pTiCFBP2178, complete sequence	57538-57567	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_MK439383	Agrobacterium tumefaciens strain CFBP1935 plasmid pTiCFBP1935, complete sequence	57538-57567	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_MK318973	Agrobacterium rhizogenes strain Colt5.8 plasmid pOC-Colt5.8, complete sequence	5568-5597	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_MK318986	Agrobacterium rhizogenes strain C6.5 plasmid pTiC6.5, complete sequence	5835-5864	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_MK439385	Agrobacterium tumefaciens strain Kerr27 plasmid pTiKerr27, complete sequence	72840-72869	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_MK439384	Agrobacterium tumefaciens strain Kerr108 plasmid pTiKerr108, complete sequence	59432-59461	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_MK439381	Agrobacterium tumefaciens strain Sule1 plasmid pTiSule1, complete sequence	57538-57567	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_MF511177	Agrobacterium rhizogenes strain C5.7 plasmid pTiC5.7, complete sequence	5835-5864	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_KY000068	Agrobacterium deltaense strain Tun151 plasmid pTi_Tun151, complete sequence	45388-45417	9	0.7
NC_015738_8	8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT	2679731-2679760	30	NZ_KY000051	Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence	76412-76441	9	0.7
NC_015738_8	8.6|2679995|30|NC_015738|CRISPRCasFinder,CRT	2679995-2680024	30	NZ_CP030828	Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence	672540-672569	9	0.7
NC_015738_8	8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT	2680126-2680155	30	NZ_CP036516	Lichenihabitans psoromatis strain PAMC 29148 plasmid p_unnamed1, complete sequence	108906-108935	9	0.7
NC_015738_8	8.12|2680390|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2680390-2680419	30	NZ_CP043439	Cupriavidus campinensis strain MJ1 plasmid unnamed2, complete sequence	151655-151684	9	0.7
NC_015738_8	8.28|2681439|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681439-2681468	30	MF919504	Mycobacterium phage DmpstrDiver, complete genome	75846-75875	9	0.7
NC_015738_8	8.28|2681439|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681439-2681468	30	MK524521	Mycobacterium phage Schatzie, complete genome	76103-76132	9	0.7
NC_015738_8	8.28|2681439|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681439-2681468	30	NC_022067	Mycobacterium phage Wanda, complete genome	73733-73762	9	0.7
NC_015738_8	8.29|2681505|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681505-2681534	30	HQ632858	Tetraselmis viridis virus SI1 genomic sequence	12023-12052	9	0.7
NC_015738_8	8.29|2681505|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681505-2681534	30	NC_020840	Tetraselmis viridis virus S20 genomic sequence	24005-24034	9	0.7
NC_015738_8	8.30|2681571|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681571-2681600	30	NZ_CP043961	Streptomyces tendae strain 139 plasmid unnamed2, complete sequence	22997-23026	9	0.7
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	803170-803199	9	0.7
NC_015738_8	8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2682162-2682191	30	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	2211139-2211168	9	0.7
NC_015738_5	5.39|2086767|35|NC_015738|CRISPRCasFinder,PILER-CR	2086767-2086801	35	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	452293-452327	10	0.714
NC_015738_5	5.45|2087167|34|NC_015738|CRISPRCasFinder,PILER-CR	2087167-2087200	34	NZ_CP011920	Burkholderia cenocepacia strain ST32 plasmid pBCEN1232, complete sequence	47126-47159	10	0.706
NC_015738_8	8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT	2680126-2680155	30	MT074430	Salmonella phage pink, complete genome	22848-22877	10	0.667
NC_015738_8	8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT	2680126-2680155	30	NC_041991	Salmonella phage vB_SenS_AG11, complete genome	15494-15523	10	0.667
NC_015738_8	8.30|2681571|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681571-2681600	30	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1857882-1857911	10	0.667
NC_015738_8	8.30|2681571|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR	2681571-2681600	30	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1769423-1769452	10	0.667

1. spacer 6.1|2676164|27|NC_015738|CRISPRCasFinder matches to NZ_CP020429 (Streptococcus sp. FDAARGOS_192 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

gactatatttgcagtcgcagaagcgac	CRISPR spacer
atctatatttgcagtcgctgaagcttc	Protospacer
. **************** *****  *

2. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MN369765 (Microbacterium phage Zanella, complete genome) position: , mismatch: 5, identity: 0.833

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
tggacgaggagatcaagaagaccgttctga	Protospacer
.**.*********************.  **

3. spacer 3.1|1375754|27|NC_015738|CRISPRCasFinder matches to MT446406 (UNVERIFIED: Escherichia virus TH33, complete genome) position: , mismatch: 6, identity: 0.778

atctacccacaatcatccgacgtttct	CRISPR spacer
cctaacccacaatcatccgactttgct	Protospacer
 .. ***************** ** **

4. spacer 3.1|1375754|27|NC_015738|CRISPRCasFinder matches to MT446402 (UNVERIFIED: Escherichia virus TH28, complete genome) position: , mismatch: 6, identity: 0.778

atctacccacaatcatccgacgtttct	CRISPR spacer
cctaacccacaatcatccgactttgct	Protospacer
 .. ***************** ** **

5. spacer 3.1|1375754|27|NC_015738|CRISPRCasFinder matches to MT446397 (UNVERIFIED: Escherichia virus TH23, complete genome) position: , mismatch: 6, identity: 0.778

atctacccacaatcatccgacgtttct	CRISPR spacer
cctaacccacaatcatccgactttgct	Protospacer
 .. ***************** ** **

6. spacer 8.6|2679995|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP042181 (Pseudomonas sp. KBS0802 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ggtagtttctcgaggcggcatgcctgggaa	CRISPR spacer
gcgagtttctcgaggccgaatgcctggaca	Protospacer
*  ************* * ********. *

7. spacer 8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT matches to MT708550 (Achromobacter phage Mano, complete genome) position: , mismatch: 6, identity: 0.8

cgaccct---cggcggtcttggccgattcctcg	CRISPR spacer
---gcctgggcggccgtcttggcggattcctcg	Protospacer
    ***   **** ******** *********

8. spacer 8.9|2680192|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP021368 (Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence) position: , mismatch: 6, identity: 0.8

acgat-atcggcatcacggagcgcaacggca	CRISPR spacer
-cgctggccggcatctcggtgcgcaacggca	Protospacer
 ** * ..******* *** ***********

9. spacer 8.9|2680192|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP021364 (Acidovorax carolinensis strain P3 plasmid pACP3.2, complete sequence) position: , mismatch: 6, identity: 0.8

acgat-atcggcatcacggagcgcaacggca	CRISPR spacer
-cgctggccggcatctcggtgcgcaacggca	Protospacer
 ** * ..******* *** ***********

10. spacer 8.17|2680718|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_012523 (Rhodococcus opacus B4 plasmid pKNR, complete sequence) position: , mismatch: 6, identity: 0.8

gagctcgacggtgctggcgtgtt--catcgga	CRISPR spacer
gagctcgaccgagctggcgtgttgccgccg--	Protospacer
********* * ***********  *..**  

11. spacer 8.19|2680849|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MF580956 (Salinibacter virus M8CC-19, complete genome) position: , mismatch: 6, identity: 0.793

ctgacttgttcgttggatacgccgaacaa	CRISPR spacer
gtgtcgagttcgttggataggccgaacac	Protospacer
 ** *  ************ ******** 

12. spacer 8.19|2680849|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MF580959 (Salinibacter virus M8CRM-1, partial genome) position: , mismatch: 6, identity: 0.793

ctgacttgttcgttggatacgccgaacaa	CRISPR spacer
gtgtcgagttcgttggataggccgaacac	Protospacer
 ** *  ************ ******** 

13. spacer 8.19|2680849|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MF580960 (Salinibacter virus M31CC-1, partial genome) position: , mismatch: 6, identity: 0.793

ctgacttgttcgttggatacgccgaacaa	CRISPR spacer
gtgtcgagttcgttggataggccgaacac	Protospacer
 ** *  ************ ******** 

14. spacer 8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MK448798 (Streptococcus phage Javan533, complete genome) position: , mismatch: 6, identity: 0.793

taaagataatccgtttattgctgtagtga	CRISPR spacer
taaagataatccttttattgccaaagagt	Protospacer
************ ********.. ** * 

15. spacer 8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_028700 (Streptococcus phage T12, complete genome) position: , mismatch: 6, identity: 0.793

taaagataatccgtttattgctgtagtga	CRISPR spacer
taaagataatccttttattgccaaagagt	Protospacer
************ ********.. ** * 

16. spacer 8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MK448790 (Streptococcus phage Javan515, complete genome) position: , mismatch: 6, identity: 0.793

taaagataatccgtttattgctgtagtga	CRISPR spacer
taaagataatccttttattgccaaagagt	Protospacer
************ ********.. ** * 

17. spacer 8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MK448783 (Streptococcus phage Javan503, complete genome) position: , mismatch: 6, identity: 0.793

taaagataatccgtttattgctgtagtga	CRISPR spacer
taaagataatccttttattgccaaagagt	Protospacer
************ ********.. ** * 

18. spacer 8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MK448967 (Streptococcus phage Javan510, complete genome) position: , mismatch: 6, identity: 0.793

taaagataatccgtttattgctgtagtga	CRISPR spacer
taaagataatccttttattgccaaagagt	Protospacer
************ ********.. ** * 

19. spacer 8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_004588 (Streptococcus prophage 315.5, complete genome) position: , mismatch: 6, identity: 0.793

taaagataatccgtttattgctgtagtga	CRISPR spacer
taaagataatccttttattgccaaagagt	Protospacer
************ ********.. ** * 

20. spacer 8.24|2681176|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024248 (Escherichia coli O27:H7 strain B4103-1 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.793

tccggttcgtacaccaagaatattgtcag	CRISPR spacer
tttcattcttacaccaagaatattgtctg	Protospacer
*.. .*** ****************** *

21. spacer 8.24|2681176|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025841 (Escherichia coli strain 214-4 plasmid p214_4_132, complete sequence) position: , mismatch: 6, identity: 0.793

tccggttcgtacaccaagaatattgtcag	CRISPR spacer
tttcattcttacaccaagaatattgtctg	Protospacer
*.. .*** ****************** *

22. spacer 8.27|2681373|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.8

ggctcg--tcatcgctccaccaccttcgcccg	CRISPR spacer
--ctcgacccatcgcttcaccaccttcgccgt	Protospacer
  ****  .*******.*************  

23. spacer 8.27|2681373|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.8

ggctcg--tcatcgctccaccaccttcgcccg	CRISPR spacer
--ctcgacccatcgcttcaccaccttcgccgt	Protospacer
  ****  .*******.*************  

24. spacer 8.37|2682031|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KT001915 (Citrobacter phage Merlin, complete genome) position: , mismatch: 6, identity: 0.793

tcggcgtaaccgataagtacgttttactt	CRISPR spacer
tcggcggaaacgataagtacgtttcctta	Protospacer
****** ** **************. .* 

25. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004875 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB95, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

26. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_017205 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT72, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

27. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015179 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB57, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

28. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015156 (Bacillus thuringiensis strain Bc601 plasmid pBTBC6, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

29. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004869 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB67, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

30. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cactcgaggagatcacgacgaccgtcaagg	Protospacer
*.  *********** ** **********.

31. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to CP020758 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-19, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

32. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010092 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB126, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

33. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010093 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB71, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

34. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021065 (Bacillus thuringiensis strain ATCC 10792 plasmid poh4, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

35. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011358 (Bacillus thuringiensis strain YC-10 plasmid pYC2226, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

36. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_018879 (Bacillus thuringiensis Bt407 plasmid BTB_78p, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

37. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013057 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-2, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

38. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_020382 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-68, complete sequence) position: , mismatch: 6, identity: 0.8

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcaaga	Protospacer
 .. ** * .*********************

39. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
tggtgaaggggatcaagaagacggtcaaga	Protospacer
.**  .***.************ *******

40. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
tggtgaaggggatcaagaagacggtcaaga	Protospacer
.**  .***.************ *******

41. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
tggtgaaggggatcaagaagagcgtcaaga	Protospacer
.**  .***.*********** ********

42. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
tggtgaaggggatcaagaagacggtcaaga	Protospacer
.**  .***.************ *******

43. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
tggtgaaggggatcaagaagacggtcaaga	Protospacer
.**  .***.************ *******

44. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
tggtgaaggggatcaagaagacggtcaaga	Protospacer
.**  .***.************ *******

45. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
tggtgaaggggatcaagaagacggtcaaga	Protospacer
.**  .***.************ *******

46. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MN234188 (Mycobacterium phage Anthony, complete genome) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cggtcgaggagatcaagacgaccgctccga	Protospacer
*** ************** *****..  **

47. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020897 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

48. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_007764 (Rhizobium etli CFN 42 plasmid p42c, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggaaatcaagaagaccggcatgg	Protospacer
**. ******.************* ** *.

49. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013524 (Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

50. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

51. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020908 (Rhizobium etli strain NXC12 plasmid pRetNXC12b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggaaatcaagaagaccggcatgg	Protospacer
**. ******.************* ** *.

52. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

53. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgctcgaggaaatcaagaagaccggcatgg	Protospacer
**  ******.************* ** *.

54. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

55. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

56. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

57. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013528 (Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

58. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

59. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

60. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

61. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_021907 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggaaatcaagaagaccggcatgg	Protospacer
**. ******.************* ** *.

62. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013581 (Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

63. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggagatcaagaaaaccggcatgg	Protospacer
**. ***************.**** ** *.

64. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013513 (Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggaaatcaagaagaccggcatgg	Protospacer
**. ******.************* ** *.

65. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgctcgaggaaatcaagaagaccggcatgg	Protospacer
**  ******.************* ** *.

66. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013603 (Rhizobium sp. N731 plasmid pRspN731b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaggaaatcaagaagaccggcatgg	Protospacer
**. ******.************* ** *.

67. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgctcgaggaaatcaagaagaccggcatgg	Protospacer
**  ******.************* ** *.

68. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgctcgaggaaatcaagaagaccggcatgg	Protospacer
**  ******.************* ** *.

69. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgctcgaggaaatcaagaagaccggcatgg	Protospacer
**  ******.************* ** *.

70. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgatcgaagagatcaagaagaccggcatgg	Protospacer
**. ***.**************** ** *.

71. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 6, identity: 0.8

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgctcgaggagatcaaaaagaccggcatgg	Protospacer
**  ************.******* ** *.

72. spacer 8.45|2682360|29|NC_015738|PILER-CR matches to MT553342 (Microbacterium phage Kelcole, complete genome) position: , mismatch: 6, identity: 0.793

-ccggcaccacgactgaccttccggtcacc	CRISPR spacer
aacgacg-cacgactggccttccggtcact	Protospacer
  **.*. ********.************.

73. spacer 8.45|2682360|29|NC_015738|PILER-CR matches to NC_048068 (Microbacterium phage OneinaGillian, complete genome) position: , mismatch: 6, identity: 0.793

-ccggcaccacgactgaccttccggtcacc	CRISPR spacer
aacgacg-cacgactggccttccggtcact	Protospacer
  **.*. ********.************.

74. spacer 8.45|2682360|29|NC_015738|PILER-CR matches to MT310894 (Microbacterium phage Tempo, complete genome) position: , mismatch: 6, identity: 0.793

-ccggcaccacgactgaccttccggtcacc	CRISPR spacer
aacgacg-cacgactggccttccggtcact	Protospacer
  **.*. ********.************.

75. spacer 5.29|2086103|34|NC_015738|CRISPRCasFinder,PILER-CR matches to NZ_KU963390 (Escherichia coli strain ECO37 plasmid ECO37P2, complete sequence) position: , mismatch: 7, identity: 0.794

tgcggccattacttgtcctcctttcttggttggc--	CRISPR spacer
tgcggccataacttttcctcctttat--gtttaccc	Protospacer
********* **** ********* *  *** .*  

76. spacer 5.29|2086103|34|NC_015738|CRISPRCasFinder,PILER-CR matches to NZ_CP010193 (Escherichia coli strain M8 plasmid B, complete genome) position: , mismatch: 7, identity: 0.794

tgcggccattacttgtcctcctttcttggttggc--	CRISPR spacer
tgcggccataacttttcctcctttat--gtttaccc	Protospacer
********* **** ********* *  *** .*  

77. spacer 7.1|2677152|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to MN096267 (Pseudomonas phage vB_PaS_IME307, complete genome) position: , mismatch: 7, identity: 0.767

taggcggtgaccggtgatgcgcctggaaga	CRISPR spacer
cctctggtgcccggtgatccgcctggaaga	Protospacer
.   .**** ******** ***********

78. spacer 7.3|2677284|29|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027299 (Streptomyces sp. SGAir0924 plasmid unnamed_5) position: , mismatch: 7, identity: 0.759

ctcttgtctgttatgccgccgccggcgtg	CRISPR spacer
atgttggctgtcatgccgccgccggccga	Protospacer
 * *** ****.**************  .

79. spacer 7.3|2677284|29|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050269 (Salinivibrio costicola strain M318 plasmid pM138.2, complete sequence) position: , mismatch: 7, identity: 0.759

ctcttgtctgttatgccgccgccggcgtg	CRISPR spacer
cctcgctctcttatgccgccgccggcatg	Protospacer
*...  *** ****************.**

80. spacer 7.3|2677284|29|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022569 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK05, complete sequence) position: , mismatch: 7, identity: 0.759

ctcttgtctgttatgccgccgccggcgtg	CRISPR spacer
tggctgtcggttatgccggcgccggcgag	Protospacer
.  .**** ********* ******** *

81. spacer 7.3|2677284|29|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NC_031050 (Enterobacteria phage vB_EcoS_NBD2, complete genome) position: , mismatch: 7, identity: 0.759

ctcttgtctgttatgccgccgccggcgtg	CRISPR spacer
ccgccgtctgtgatgccgccgccgccgtc	Protospacer
*. ..****** ************ *** 

82. spacer 7.4|2677349|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 7, identity: 0.767

agcttctttaatacccaatctttcgcctct	CRISPR spacer
tgcttctttaatagcaaatctttcttttgt	Protospacer
 ************ * ******** ..* *

83. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to MT354569 (Pseudomonas phage phiK7B1, complete genome) position: , mismatch: 7, identity: 0.767

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
ctcgtcgttctcgcccaggatgacgcggcg	Protospacer
*  *..********.**** ********* 

84. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 7, identity: 0.767

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
cggatagttctcgcccaggctgatgcggca	Protospacer
*.*.. ********.********.***** 

85. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to MG518519 (Streptomyces phage Manuel, complete genome) position: , mismatch: 7, identity: 0.767

caggctgttctcgctcaggct---gacgcggct	CRISPR spacer
caggctgttatcgctcaggctctgggcaag---	Protospacer
********* ***********   *.*. *   

86. spacer 7.12|2677876|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to MK496752 (Capybara microvirus Cap1_SP_228, complete genome) position: , mismatch: 7, identity: 0.767

ccatcatcgcatatcaagaactaaaggacg	CRISPR spacer
agaagaacgcttatcaaaaactaaaggacg	Protospacer
  *  * *** ******.************

87. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to MT354569 (Pseudomonas phage phiK7B1, complete genome) position: , mismatch: 7, identity: 0.767

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
ctcgtcgttctcgcccaggatgacgcggcg	Protospacer
*  *..********.**** ********* 

88. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 7, identity: 0.767

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
cggatagttctcgcccaggctgatgcggca	Protospacer
*.*.. ********.********.***** 

89. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to MG518519 (Streptomyces phage Manuel, complete genome) position: , mismatch: 7, identity: 0.767

caggctgttctcgctcaggct---gacgcggct	CRISPR spacer
caggctgttatcgctcaggctctgggcaag---	Protospacer
********* ***********   *.*. *   

90. spacer 8.4|2679863|30|NC_015738|CRISPRCasFinder,CRT matches to LR721753 (Aliivibrio wodanis 06/09/160 plasmid 2 complete sequence) position: , mismatch: 7, identity: 0.767

agttgcaagcatggtatgtgatcttcctta	CRISPR spacer
aataaaaagcatggtaagtgatcttctttc	Protospacer
*.* . ********** *********.** 

91. spacer 8.6|2679995|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP039632 (Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

ggtagtttctcgaggcggcatgcctgggaa	CRISPR spacer
atgagtttctcgaggccgaatgcctggaca	Protospacer
.  ************* * ********. *

92. spacer 8.6|2679995|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP007510 (Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid) position: , mismatch: 7, identity: 0.767

ggtagtttctcgaggcggcatgcctgggaa	CRISPR spacer
atgagtttctcgaggccgaatgcctggaca	Protospacer
.  ************* * ********. *

93. spacer 8.6|2679995|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_AP015030 (Pseudomonas putida strain KF715 plasmid pKF715A, complete sequence) position: , mismatch: 7, identity: 0.767

ggtagtttctcgaggcggcatgcctgggaa	CRISPR spacer
atgagtttctcgaggccgaatgcctggaca	Protospacer
.  ************* * ********. *

94. spacer 8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 7, identity: 0.767

cgaccctcggcggtcttggccgattcctcg	CRISPR spacer
tcatccggcgcggtcttggccgatccctcg	Protospacer
. *.**   ***************.*****

95. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019095 (Synechococcus phage ACG-2014f isolate Syn7803US34, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

96. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019086 (Synechococcus phage ACG-2014f isolate Syn7803US17, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

97. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019143 (Synechococcus phage ACG-2014f isolate Syn7803C12, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

98. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019102 (Synechococcus phage ACG-2014f isolate Syn7803US43, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

99. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019066 (Synechococcus phage ACG-2014f isolate Syn7803C9, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

100. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019142 (Synechococcus phage ACG-2014f isolate Syn7803C11, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

101. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019105 (Synechococcus phage ACG-2014f isolate Syn7803US4, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

102. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019159 (Synechococcus phage ACG-2014f isolate Syn7803C34, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

103. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019111 (Synechococcus phage ACG-2014f isolate Syn7803US57, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

104. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019090 (Synechococcus phage ACG-2014f isolate Syn7803US24, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

105. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019152 (Synechococcus phage ACG-2014f isolate Syn7803C25, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

106. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019151 (Synechococcus phage ACG-2014f isolate Syn7803C24, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

107. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019150 (Synechococcus phage ACG-2014f isolate Syn7803C22, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

108. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019097 (Synechococcus phage ACG-2014f isolate Syn7803US37, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

109. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019037 (Synechococcus phage ACG-2014f isolate Syn7803C58, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

110. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019099 (Synechococcus phage ACG-2014f isolate Syn7803US3, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

111. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019155 (Synechococcus phage ACG-2014f isolate Syn7803C29, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

112. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019085 (Synechococcus phage ACG-2014f isolate Syn7803US13, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

113. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019096 (Synechococcus phage ACG-2014f isolate Syn7803US36, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

114. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019091 (Synechococcus phage ACG-2014f isolate Syn7803US26, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

115. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019144 (Synechococcus phage ACG-2014f isolate Syn7803C14, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

116. spacer 8.11|2680324|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KJ019145 (Synechococcus phage ACG-2014f isolate Syn7803C15, complete genome) position: , mismatch: 7, identity: 0.767

tctccaacgcctgatgcaaacttcgatccg---	CRISPR spacer
actccaatgcctgatgcaaact---attcagta	Protospacer
 ******.**************   **.*.   

117. spacer 8.13|2680456|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MH617035 (Microviridae sp. isolate ctcj515, complete genome) position: , mismatch: 7, identity: 0.759

aggagtagattcatgaactataaagagtt	CRISPR spacer
atccgtagatttatgaacaataaagagaa	Protospacer
*   *******.****** ********  

118. spacer 8.13|2680456|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MT074138 (Bacteroides phage DAC17, complete genome) position: , mismatch: 7, identity: 0.759

aggagtagattcatgaactataaagagtt	CRISPR spacer
aggagaagatacatgaactataagatatg	Protospacer
***** **** ************.. .* 

119. spacer 8.13|2680456|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MT074136 (Bacteroides phage DAC15, complete genome) position: , mismatch: 7, identity: 0.759

aggagtagattcatgaactataaagagtt	CRISPR spacer
aggagaagatacatgaactataagatatg	Protospacer
***** **** ************.. .* 

120. spacer 8.14|2680521|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MN693895 (Marine virus AFVG_250M461, complete genome) position: , mismatch: 7, identity: 0.767

gaaaccaccgctttttggtgcttttcgcta	CRISPR spacer
cataccactgctttttggtgtttttcacgt	Protospacer
 * *****.***********.*****.*  

121. spacer 8.17|2680718|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_018582 (Gordonia sp. KTR9 plasmid pGKT1, complete sequence) position: , mismatch: 7, identity: 0.767

gagctcgacggtgctggcgtgttcatcgga	CRISPR spacer
gagctcgtcggggctggcgtgtttccagta	Protospacer
******* *** ***********. . * *

122. spacer 8.21|2680980|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 7, identity: 0.759

taaagataatccgtttattgctgtagtga	CRISPR spacer
caaagataatctgtttattgctggcggtt	Protospacer
.**********.***********  *   

123. spacer 8.23|2681110|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KY296500 (Xenohaliotis phage pCXc-HC2016, complete genome) position: , mismatch: 7, identity: 0.767

gctgactgaatttgttcgatcaattgcacg	CRISPR spacer
actgactgaatttgttggatcacttagtca	Protospacer
.*************** ***** **.  *.

124. spacer 8.23|2681110|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to KY296501 (Xenohaliotis phage pCXc-HR2015, complete genome) position: , mismatch: 7, identity: 0.767

gctgactgaatttgttcgatcaattgcacg	CRISPR spacer
actgactgaatttgttggatcacttagtca	Protospacer
.*************** ***** **.  *.

125. spacer 8.36|2681966|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MG945709 (UNVERIFIED: Microviridae sp. isolate 1866-1801, complete genome) position: , mismatch: 7, identity: 0.759

cttcgcaggcttttatggcactctttccg	CRISPR spacer
cttcgcaggcttctatggctctccagcaa	Protospacer
************.****** ***.  * .

126. spacer 8.37|2682031|29|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_019329 (Sulfitobacter sp. DFL14 plasmid pDFL14-10, complete sequence) position: , mismatch: 7, identity: 0.759

tcggcgtaaccgataagtacgttttactt	CRISPR spacer
cgggcgtaaccgataagcatgttttttgt	Protospacer
. ***************.*.***** . *

127. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054616 (Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
gcgtcgaggatatcaagaagaccgtcagcc	Protospacer
  * ****** ****************.  

128. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 7, identity: 0.767

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
gcgtcgaggacatcaagaggaccgtcaacc	Protospacer
  * ****** *******.*********  

129. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021084 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence) position: , mismatch: 7, identity: 0.767

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
ccatcgaggacatcaagaagaccgtcgaag	Protospacer
* . ****** ***************.*..

130. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.767

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
acgtcgaggagttcaagaagaccgttgaca	Protospacer
  * ******* *************..* *

131. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.767

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
acgtcgaggagttcaagaagaccgttgaca	Protospacer
  * ******* *************..* *

132. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_018488 (Bacillus thuringiensis HD-771 plasmid p04, complete sequence) position: , mismatch: 7, identity: 0.767

-cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
atatgcta-aagatcaagaagaccgtcacga	Protospacer
 .. ** * .****************** **

133. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MN062186 (Stenotrophomonas phage Pokken, complete genome) position: , mismatch: 7, identity: 0.767

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
agatcttggagatcaagaagacggccaaga	Protospacer
 *. *  *************** *.*****

134. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014964 (Geobacter anodireducens strain SD-1 plasmid pSD, complete sequence) position: , mismatch: 7, identity: 0.767

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
cgaaactggagatcaagaagtccgccaaga	Protospacer
**..   ************* ***.*****

135. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 7, identity: 0.767

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
ctatcgaagagatcaagaagaccggcatgg	Protospacer
* . ***.**************** ** *.

136. spacer 8.42|2682359|30|NC_015738|CRISPRCasFinder,CRT matches to MT553342 (Microbacterium phage Kelcole, complete genome) position: , mismatch: 7, identity: 0.767

-ccggcaccacgactgaccttccggtcacca	CRISPR spacer
aacgacg-cacgactggccttccggtcactc	Protospacer
  **.*. ********.************. 

137. spacer 8.42|2682359|30|NC_015738|CRISPRCasFinder,CRT matches to NC_048068 (Microbacterium phage OneinaGillian, complete genome) position: , mismatch: 7, identity: 0.767

-ccggcaccacgactgaccttccggtcacca	CRISPR spacer
aacgacg-cacgactggccttccggtcactc	Protospacer
  **.*. ********.************. 

138. spacer 8.42|2682359|30|NC_015738|CRISPRCasFinder,CRT matches to MT310894 (Microbacterium phage Tempo, complete genome) position: , mismatch: 7, identity: 0.767

-ccggcaccacgactgaccttccggtcacca	CRISPR spacer
aacgacg-cacgactggccttccggtcactc	Protospacer
  **.*. ********.************. 

139. spacer 5.29|2086103|34|NC_015738|CRISPRCasFinder,PILER-CR matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 8, identity: 0.765

tgcggccattacttgtcctcctttcttggttggc	CRISPR spacer
taatgccattacttatcatcctttcttggttctg	Protospacer
*.  **********.** *************   

140. spacer 5.29|2086103|34|NC_015738|CRISPRCasFinder,PILER-CR matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 8, identity: 0.765

tgcggccattacttgtcctcctttcttggttggc	CRISPR spacer
taatgccattacttatcatcctttcttggttctg	Protospacer
*.  **********.** *************   

141. spacer 5.32|2086302|33|NC_015738|CRISPRCasFinder,PILER-CR matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 8, identity: 0.758

aacgatgtgccgaccgagcttttgccgctcgtt	CRISPR spacer
gtcgatgtgctcaccgagcttttgcctttggct	Protospacer
. ********. ************** .* *.*

142. spacer 7.1|2677152|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to CP054934 (Nocardiopsis flavescens strain NA01583 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

taggcggtgaccggtgatgcgcctggaaga	CRISPR spacer
cgatcggtgactggtcatgcgcctggaact	Protospacer
... *******.*** ************  

143. spacer 7.1|2677152|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020443 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

taggcggtgaccggtgatgcgcctggaaga	CRISPR spacer
ttcgacctgaccggtgatgcggctggaatg	Protospacer
*  *   ************** ****** .

144. spacer 7.2|2677218|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031226 (Pseudomonas amygdali pv. lachrymans str. M301315 plasmid pMPPla107, complete sequence) position: , mismatch: 8, identity: 0.733

ggtgatcgaaatctgaaccatacagagcat	CRISPR spacer
ggtgatcgaaatctcgaccatacaccctga	Protospacer
************** .********   .. 

145. spacer 7.5|2677415|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NC_015169 (Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence) position: , mismatch: 8, identity: 0.733

tcaccgtacggcggctgaacacctgtcaaa	CRISPR spacer
agaccttacggcggctgaacagctggcggc	Protospacer
  *** *************** *** *.. 

146. spacer 7.9|2677678|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033894 (Serratia liquefaciens strain FG3 plasmid p1-159, complete sequence) position: , mismatch: 8, identity: 0.733

cactccgtcagatcaagcggcttgccctca	CRISPR spacer
tgcgaactcacatcaagcggcttgcccgca	Protospacer
..*    *** **************** **

147. spacer 7.9|2677678|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.733

cactccgtcagatcaagcggcttgccctca	CRISPR spacer
gaggaagaaagatgaagcggcttgccctca	Protospacer
 *    *  **** ****************

148. spacer 7.9|2677678|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 8, identity: 0.733

cactccgtcagatcaagcggcttgccctca	CRISPR spacer
cgacccgacagctcaagcggcttgcccctg	Protospacer
*. .*** *** ***************...

149. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to MW149097 (Microvirus sp. isolate gila5, complete genome) position: , mismatch: 8, identity: 0.733

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
acccttactctcgctcaggctgacgccgct	Protospacer
    .*..****************** ***

150. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016619 (Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
ggcgctgttctggctcaggcagacgccgga	Protospacer
 . ******** ******** ***** *  

151. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016619 (Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
gaacctgttctcgctcaggctgtggcgtgg	Protospacer
 *. ******************  ***   

152. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to MW149097 (Microvirus sp. isolate gila5, complete genome) position: , mismatch: 8, identity: 0.733

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
acccttactctcgctcaggctgacgccgct	Protospacer
    .*..****************** ***

153. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP016619 (Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
ggcgctgttctggctcaggcagacgccgga	Protospacer
 . ******** ******** ***** *  

154. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP016619 (Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
gaacctgttctcgctcaggctgtggcgtgg	Protospacer
 *. ******************  ***   

155. spacer 8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP023712 (Rhodococcus ruber strain YC-YT1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cgaccctcggcggtcttggccgattcctcg	CRISPR spacer
atcgtctcggcggtcttggccggatccttg	Protospacer
    .*****************. ****.*

156. spacer 8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT matches to MH834621 (Arthrobacter phage Nandita, complete genome) position: , mismatch: 8, identity: 0.733

cgaccctcggcggtcttggccgattcctcg	CRISPR spacer
ttgactgcggcggtcttggccttttcctcg	Protospacer
. . *. **************  *******

157. spacer 8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT matches to MH834627 (Arthrobacter phage Ryan, complete genome) position: , mismatch: 8, identity: 0.733

cgaccctcggcggtcttggccgattcctcg	CRISPR spacer
ttgactgcggcggtcttggccttttcctcg	Protospacer
. . *. **************  *******

158. spacer 8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT matches to KY176369 (Salmonella phage STP03, complete genome) position: , mismatch: 8, identity: 0.733

cgaccctcggcggtcttggccgattcctcg-----	CRISPR spacer
gcaccctcggcggtgttggccga-----cgtggat	Protospacer
  ************ ********     **     

159. spacer 8.9|2680192|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP035384 (Klebsiella pneumoniae strain AP8555 plasmid pAP855, complete sequence) position: , mismatch: 8, identity: 0.733

acgatatcg-----gcatcacggagcgcaacggca	CRISPR spacer
-----cttgccagcgcatcacggagcgcagcggca	Protospacer
      *.*     ***************.*****

160. spacer 8.12|2680390|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.733

tgagaggatctgctgcggaacgacattcat	CRISPR spacer
tacgaggatctgctgcgcaacgacaacgcc	Protospacer
*. ************** ******* .  .

161. spacer 8.29|2681505|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.733

agcttgtcagcccacgcattcatcgactct	CRISPR spacer
agcttgtcggcccacgcgttcatggcgctc	Protospacer
********.********.***** *  ...

162. spacer 8.29|2681505|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.733

agcttgtcagcccacgcattcatcgactct	CRISPR spacer
agcttgtcggcccacgcgttcatggcgctc	Protospacer
********.********.***** *  ...

163. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MK875791 (Gordonia phage Yakult, complete genome) position: , mismatch: 8, identity: 0.733

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
tcatggaggagatcaagaagactgtccagg	Protospacer
. .  *****************.*** **.

164. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN831788 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence) position: , mismatch: 8, identity: 0.733

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
gcggcgagaagaacaagaagaccgtgaccc	Protospacer
  ******.*** ************ *   

165. spacer 8.40|2682228|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 8, identity: 0.733

taaagtccgccctgccacgtcgtgaacgac	CRISPR spacer
cgcaagccgccctgccatgtcctgaacgat	Protospacer
.. *. ***********.*** *******.

166. spacer 7.4|2677349|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to MT647606 (Pelagibacter phage Mosig EXVC030M, partial genome) position: , mismatch: 9, identity: 0.7

agcttctttaatacccaatctttcgcctct	CRISPR spacer
gtcttctttaatacctaatcttttttgtac	Protospacer
. *************.*******. . * .

167. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000052 (Agrobacterium tumefaciens strain CFBP7000 plasmid pTi_CFBP7000, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

168. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000049 (Agrobacterium rhizogenes strain CFBP4423 plasmid pTi_CFBP4423, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

169. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000055 (Agrobacterium rubi strain Tun159 plasmid pTi_Tun159, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

170. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000048 (Agrobacterium rhizogenes strain CFBP2746 plasmid pTi_CFBP2746, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

171. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000053 (Agrobacterium genomosp. 1 strain DC12-001 plasmid pTi_DC12-001, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

172. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000054 (Agrobacterium tumefaciens strain Tun154 plasmid pTi_Tun154, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

173. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to KY000034 (Agrobacterium sp. strain C58PMP90 plasmid pTi_C58PMP90, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

174. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to KY000036 (Agrobacterium sp. strain GV3101 plasmid pTi_GV3101, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

175. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032929 (Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

176. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039926 (Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129c, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

177. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033033 (Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

178. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030831 (Neorhizobium sp. NCHU2750 plasmid pTiNCHU2750, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

179. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NC_003065 (Agrobacterium fabrum str. C58 plasmid Ti, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

180. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK439382 (Agrobacterium tumefaciens strain CFBP2178 plasmid pTiCFBP2178, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

181. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK439383 (Agrobacterium tumefaciens strain CFBP1935 plasmid pTiCFBP1935, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

182. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK318973 (Agrobacterium rhizogenes strain Colt5.8 plasmid pOC-Colt5.8, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

183. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK318986 (Agrobacterium rhizogenes strain C6.5 plasmid pTiC6.5, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

184. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK439385 (Agrobacterium tumefaciens strain Kerr27 plasmid pTiKerr27, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

185. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK439384 (Agrobacterium tumefaciens strain Kerr108 plasmid pTiKerr108, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

186. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK439381 (Agrobacterium tumefaciens strain Sule1 plasmid pTiSule1, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

187. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF511177 (Agrobacterium rhizogenes strain C5.7 plasmid pTiC5.7, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

188. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000068 (Agrobacterium deltaense strain Tun151 plasmid pTi_Tun151, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

189. spacer 7.10|2677744|30|NC_015738|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000051 (Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

190. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_KY000052 (Agrobacterium tumefaciens strain CFBP7000 plasmid pTi_CFBP7000, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

191. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_KY000049 (Agrobacterium rhizogenes strain CFBP4423 plasmid pTi_CFBP4423, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

192. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_KY000055 (Agrobacterium rubi strain Tun159 plasmid pTi_Tun159, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

193. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_KY000048 (Agrobacterium rhizogenes strain CFBP2746 plasmid pTi_CFBP2746, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

194. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_KY000053 (Agrobacterium genomosp. 1 strain DC12-001 plasmid pTi_DC12-001, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

195. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_KY000054 (Agrobacterium tumefaciens strain Tun154 plasmid pTi_Tun154, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

196. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to KY000034 (Agrobacterium sp. strain C58PMP90 plasmid pTi_C58PMP90, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

197. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to KY000036 (Agrobacterium sp. strain GV3101 plasmid pTi_GV3101, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

198. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP032929 (Agrobacterium tumefaciens strain 1D1460 plasmid pTi1D1460, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

199. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP039926 (Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129c, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

200. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP033033 (Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

201. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP030831 (Neorhizobium sp. NCHU2750 plasmid pTiNCHU2750, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

202. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NC_003065 (Agrobacterium fabrum str. C58 plasmid Ti, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

203. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_MK439382 (Agrobacterium tumefaciens strain CFBP2178 plasmid pTiCFBP2178, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

204. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_MK439383 (Agrobacterium tumefaciens strain CFBP1935 plasmid pTiCFBP1935, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

205. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_MK318973 (Agrobacterium rhizogenes strain Colt5.8 plasmid pOC-Colt5.8, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

206. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_MK318986 (Agrobacterium rhizogenes strain C6.5 plasmid pTiC6.5, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

207. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_MK439385 (Agrobacterium tumefaciens strain Kerr27 plasmid pTiKerr27, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

208. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_MK439384 (Agrobacterium tumefaciens strain Kerr108 plasmid pTiKerr108, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

209. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_MK439381 (Agrobacterium tumefaciens strain Sule1 plasmid pTiSule1, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

210. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_MF511177 (Agrobacterium rhizogenes strain C5.7 plasmid pTiC5.7, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

211. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_KY000068 (Agrobacterium deltaense strain Tun151 plasmid pTi_Tun151, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

212. spacer 8.2|2679731|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_KY000051 (Agrobacterium genomosp. 1 strain CFBP5503 plasmid pTi_CFBP5503, complete sequence) position: , mismatch: 9, identity: 0.7

caggctgttctcgctcaggctgacgcggct	CRISPR spacer
agagcggttctggctcaggctgacgccttg	Protospacer
 ..** ***** **************  . 

213. spacer 8.6|2679995|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 9, identity: 0.7

ggtagtttctcgaggcggcatgcctgggaa	CRISPR spacer
atcgcaatctcgaagcggcctgcctgggaa	Protospacer
. ..   ******.***** **********

214. spacer 8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT matches to NZ_CP036516 (Lichenihabitans psoromatis strain PAMC 29148 plasmid p_unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

cgaccctcggcggtcttggccgattcctcg	CRISPR spacer
gttccctcggcggccttggccgcttcgagt	Protospacer
   **********.******** ***    

215. spacer 8.12|2680390|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043439 (Cupriavidus campinensis strain MJ1 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

tgagaggatctgctgcggaacgacattcat	CRISPR spacer
acgcccgatctgctgcggaaggacattcca	Protospacer
  .   ************** *******  

216. spacer 8.28|2681439|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MF919504 (Mycobacterium phage DmpstrDiver, complete genome) position: , mismatch: 9, identity: 0.7

cggggctcggcgacaccgttcgtggtgtgt	CRISPR spacer
tggggctcggcggcaccgttcgggaccaag	Protospacer
.***********.********* *..  . 

217. spacer 8.28|2681439|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to MK524521 (Mycobacterium phage Schatzie, complete genome) position: , mismatch: 9, identity: 0.7

cggggctcggcgacaccgttcgtggtgtgt	CRISPR spacer
tggggctcggcggcaccgttcgggaccaag	Protospacer
.***********.********* *..  . 

218. spacer 8.28|2681439|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_022067 (Mycobacterium phage Wanda, complete genome) position: , mismatch: 9, identity: 0.7

cggggctcggcgacaccgttcgtggtgtgt	CRISPR spacer
tggggctcggcggcaccgttcgggaccaag	Protospacer
.***********.********* *..  . 

219. spacer 8.29|2681505|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to HQ632858 (Tetraselmis viridis virus SI1 genomic sequence) position: , mismatch: 9, identity: 0.7

agcttgtcagcccacgcattcatcgactct	CRISPR spacer
gtggcctcagcccactcattcatcgagtcc	Protospacer
.   . ********* ********** **.

220. spacer 8.29|2681505|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_020840 (Tetraselmis viridis virus S20 genomic sequence) position: , mismatch: 9, identity: 0.7

agcttgtcagcccacgcattcatcgactct	CRISPR spacer
gtggcctcagcccactcattcatcgagtcc	Protospacer
.   . ********* ********** **.

221. spacer 8.30|2681571|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043961 (Streptomyces tendae strain 139 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

gatccaacgccccggagtagacgcgcgtgc	CRISPR spacer
tgcgcaacgccccggagaagacgcgggaca	Protospacer
 .. ************* ******* *   

222. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 9, identity: 0.7

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
gcaaggagaagatcaaggagaccgtcaacg	Protospacer
  .. ***.********.********** .

223. spacer 8.39|2682162|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.7

cgggcgaggagatcaagaagaccgtcaaga	CRISPR spacer
agttggaggaggtcaagaagaccgtcgccg	Protospacer
 *   ******.**************.  .

224. spacer 5.39|2086767|35|NC_015738|CRISPRCasFinder,PILER-CR matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 10, identity: 0.714

gagatcggccgcgagaacgccgccaaacagcgcaa	CRISPR spacer
gcctacgaccgcgagatcgccgccaaacagcaggt	Protospacer
*    **.******** **************. . 

225. spacer 5.45|2087167|34|NC_015738|CRISPRCasFinder,PILER-CR matches to NZ_CP011920 (Burkholderia cenocepacia strain ST32 plasmid pBCEN1232, complete sequence) position: , mismatch: 10, identity: 0.706

tgtgcgtttcgtcgtcctggttcacgtcggggga	CRISPR spacer
cgggcgtttcgtcgtcctggagcacgttcagcac	Protospacer
.* *****************  *****. .* . 

226. spacer 8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT matches to MT074430 (Salmonella phage pink, complete genome) position: , mismatch: 10, identity: 0.667

cgaccctcggcggtcttggccgattcctcg	CRISPR spacer
gcgccctcggcggtgttggccgatgtggat	Protospacer
  .*********** ********* .    

227. spacer 8.8|2680126|30|NC_015738|CRISPRCasFinder,CRT matches to NC_041991 (Salmonella phage vB_SenS_AG11, complete genome) position: , mismatch: 10, identity: 0.667

cgaccctcggcggtcttggccgattcctcg	CRISPR spacer
gcgccctcggcggtgttggccgatgtggat	Protospacer
  .*********** ********* .    

228. spacer 8.30|2681571|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.667

gatccaacgccccggagtagacgcgcgtgc	CRISPR spacer
accacaacgccccggagaagacgcgatccg	Protospacer
. . ************* *******  .  

229. spacer 8.30|2681571|30|NC_015738|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 10, identity: 0.667

gatccaacgccccggagtagacgcgcgtgc	CRISPR spacer
accacaacgccccggagaagacgcgatccg	Protospacer
. . ************* *******  .  

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	2795989 : 2799932	7	Streptococcus_phage(100.0%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_015738|2795989:2799932|DBSCAN-SWA
CATGAACAAAAATATAAAATATTCTCAAAACTTTTTAACGAGTGAAAAAGTACTCAACCAAATAATAAAACAATTGAATTTAAAAGAAACCGATACCGTTTACGAAATTGGAACAGGTAAAGGGCATTTAACGACGAAACTGGCTAAAATAAGTAAACAGGTAACGTCTATTGAATTAGACAGTCATCTATTCAACTTATCGTCAGAAAAATTAAAACTGAATACTCGTGTCACTTTAATTCACCAAGATATTCTACAGTTTCAATTCCCTAACAAACAGAGGTATAAAATTGTTGGGAGTATTCCTTACCATTTAAGCACACAAATTATTAAAAAAGTGGTTTTTGAAAGCCATGCGTCTGACATCTATCTGATTGTTGAAGAAGGATTCTACAAGCGTACCTTGGATATTCACCGAACACTAGGGTTGCTCTTGCACACTCAAGTCTCGATTCAGCAATTGCTTAAGCTGCCAGCGGAATGCTTTCATCCTAAACCAAAAGTAAACAGTGTCTTAATAAAACTTACCCGCCATACCACAGATGTTCCAGATAAATATTGGAAGCTATATACGTACTTTGTTTCAAAATGGGTCAATCGAGAATATCGTCAACTGTTTACTAAAAATCAGTTTCATCAAGCAATGAAACACGCCAAAGTAAACAATTTAAGTACCGTTACTTATGAGCAAGTATTGTCTATTTTTAATAGTTATCTATTATTTAACGGGAGGAAATAATTCTATGAGTCGCTTTTGTAAATTTGGAAAGTTACACGTTACTAAAGGGAATGTAGATAAATTATTAGGTATACTACTGACAGCTTCCAAGGAGCTAAAGAGGTCCCTAGCGCCTACGGGGAATTTGTATCGATAAGGGGTACAAATTCCCACTAAGCGCTCGGGACCCCTTGTAGGAAAATGTCCTAAGTGTGGCAACAATATTGTATTAAAAAAATCGTTTTATGGTTGTTCAAATTATCCTGAATGTACCTTCACTTTAGCTGAACATTTTAGAAAGAAAAAACTCACCAAAACAAATGTAAAAGAATTACTAGAGGGAAAAGAAACCCTGGTAAAAGGAATCAAAACGAAAGATAGAAAGTCCTACAATGCCGTTGTAAAAATCGGAGAAAAGGGATATATTGATTTTATCTATGTATGAGAACGTATTTTTTGAAATGCTTGAGCGAATCATTCAATTAGAAAACGAAAAAGAATAGAATCACAAATCACAAGTGATTAATCACAAATCACTTGTGATTTGTGATTGTTGATGATAAAATAAGAGTAAGAAGAAATAGAAAGAAGTGAGTGGTTGTGGGAAATTTAGGCGCACAAAAAGCAAAACGAAATGATACACCAATCAGTGCAAAAAAAGATATTATGGGGGATAAGACGGTTCGTGTTCGTGCTGACTTGCACCATATTATAAAAATCGAAACAGCAAAGAATGGCGGAAACGTAAAAGAAGTTATGGATAAAGCCTTAGAAGAATATATTCGGAAATATTTACCTGACAAACTTTAAAAGGAGTGAAAATGAAATGGCAGTTACTTATGAAAAAACATTTGAAATAGAGATCATTAACGAATTATCGGCAAGCGTTTATAATCGAGTATTAAACTATGTTTTGAATCATGAATTAAATAAAAATGACTCTCAATTATTGGAAGTCAATTTATTAAACCAATTAAAGCTTGCAAAACGTGTAAATCTTTTTGATTATTCTTTAGAAGAATTACAAGCCGTTCATGAGTATTGGCGGTCAATGAATCGCTATTCAAAACAAGTTTTGAATAAAGAGAAAGTGGCTTAATATGGCAAATATAGTCAATTTTACTGACAAACAATTTGAAAATCGCTTAAATGATAATTTAGAAGAATTGGTTCAAGGAAAAAAAGCGGTTGAATCGCCAACCGCTTTTTTACTTGGTGGGCAACCAGGGTCAGGGAAAACGAGTTTGCGATCAGCAATTCTTGAAGAAACACAAGGGAATGTTATTGTCATTGATAAAGAGGGGTTAAAAGCTGCTGGTGAATGGCATCAATTAAAACCTTTGTTTCCTTCGTTAGAAGGAAAATCTGTTCTTGACTTGGGGTGCGGATATGGCTGGCACTGCAAGTTCGCAGAAGAACAAGGAGCTACAAAAATATTAGGGATCGATTTAAGTAAGAAAATGATTGAGGAAGCCCAAAAGCGCAATTCAGGAAATCAAATTGAATATCGTATTAGCGGATTAGAGGAATATGACTATCCAGAAAATGAATGGGATTGTGTTATATCTAATTTAGCTCTGCACTATATAGAGGACATAGTGGAAATATTTCAAAAAGTGTATAGGACATTAAAACCAGGTGGAATTTTTCTTTTTAATATCGAACACCCTGTTTTTACCGCAGGAGTTGGGCAGGATTGGATTTATACAGATGATGGGAAACCGCAATATTGGGCGATTGATAATTACTTTATAACAGGAGAACGAAATACACATTTTTTAGGATGTGATGTAGTAAAACAACATCACACACTTACACAGATTATAATGGGATTGCTGAACAATGGGTTTGAGCTTAAAGTTGTAGAGGAAGCAGAACCGCCTAAAGAGATGATGGATATTCCGGGTATGGAAGATGAACTTCGCCGCCCGATGATGTTACTTGTAAAGGCGATAGCGAAAAAATAATATCTCTATTAGGAAAACTGATATACCCCAATTTAGAGAATGGCATAGTAATTCCTAGTGATAAAGAGAAAATGATTGCACTGGCAAATAAATACATTGAAAAAGAAAATGTAGATGCACTCATTCTCGCCTGTACGGAGCTGCCACTTGCCATAAAGCCCGAAGATGTTAATGTGCCAATCGTGAATACAACCCAAGTACATATCAATGCAATTTACCAATATGCAATTCGATAAAAATAGCAAAGCCAGCCGAGCCAGTCAACGGTCAAGATGAACGGCGCATTTCATGCGCCGCCGTTGACAGCCCCGCCCGTCTTTGCTAAAGGGTAATCAAGGCGGGAAAGCCCTAAAATGGCTTCACACCTATTTCAATAATTGGAGGAGATAAAAATGAGATCAGAAAAGGAAGTTTATGATATTGTTTTGAATTTTGCAAAAACAGACAAACGCATTCGCATGGTTACTTTGGAAGGATCTAGAACAAATACAAATATTCCGCCTGATGATTTTCAGGATTTTGATATTACTTTTTTTGTTACGGATATGGACAGCTTCACAAGTGATGATAAATGGCTAGATATATTTGGTGAAAGGTTGATTCTGCAAAAGCCGGAAGATATGGAATTATTTCCAGCTGTAGAAAAGGGATTTTCATATTTAATGCTGTTTACTGATGATGTTAAGATAGATTTAACTTTGCTGCCGCTGGAACTGATAGACGAGTATTTTACATGGGATAAACTGGTAAAGTTACTGTTGGATAAAGACAACCGTATCGTAAAGCCGCCAATACCAACGGATATAGACTACCACTTGCAGAAGCCTACTCAAAGAATGTTTGACGATTGCTGTAATGAATTTTGGAATACTACAACATATGTAGTAAAGGGCTTATGCCGCAAAGAAATTCTTTTTGCTATTGACCATATGAATGATATAGTACGAAAAGAATTGCTTCGCATGATTTCCTGGCTGATTGGTATCAAACAGGGATTTCATTTCAGTTTGGGAAAAAACTATAAATTTATGAAGCAATATGTCCCAGAGGAATTGTGGGAACGACTTATGTCCACTTATAATATGGATTCCTATCCCCATATGTGGGAATCCTTTGAACAATGTATGGCATTGTTCCGGGAGGTTTCGTCAGAAGTGGCATGCCAGTTGGATTACCAGTATCCACTATATGATGAAAAAATCAGTAATTATGTGATTCGGCAAAAGAAAAAATATGGCATTGAAGATGATAACAAATAA

Protein sequences of DBSCAN-SWA_1

>NC_015738|2795989:2799932|2797806_2798673_+|WP_007857419.1|DBSCAN-SWA
MANIVNFTDKQFENRLNDNLEELVQGKKAVESPTAFLLGGQPGSGKTSLRSAILEETQGNVIVIDKEGLKAAGEWHQLKPLFPSLEGKSVLDLGCGYGWHCKFAEEQGATKILGIDLSKKMIEEAQKRNSGNQIEYRISGLEEYDYPENEWDCVISNLALHYIEDIVEIFQKVYRTLKPGGIFLFNIEHPVFTAGVGQDWIYTDDGKPQYWAIDNYFITGERNTHFLGCDVVKQHHTLTQIIMGLLNNGFELKVVEEAEPPKEMMDIPGMEDELRRPMMLLVKAIAKK
>NC_015738|2795989:2799932|2797306_2797516_+|WP_000527317.1|DBSCAN-SWA
MGNLGAQKAKRNDTPISAKKDIMGDKTVRVRADLHHIIKIETAKNGGNVKEVMDKALEEYIRKYLPDKL
>NC_015738|2795989:2799932|2799065_2799932_+|WP_001255868.1|DBSCAN-SWA
MRSEKEVYDIVLNFAKTDKRIRMVTLEGSRTNTNIPPDDFQDFDITFFVTDMDSFTSDDKWLDIFGERLILQKPEDMELFPAVEKGFSYLMLFTDDVKIDLTLLPLELIDEYFTWDKLVKLLLDKDNRIVKPPIPTDIDYHLQKPTQRMFDDCCNEFWNTTTYVVKGLCRKEILFAIDHMNDIVRKELLRMISWLIGIKQGFHFSLGKNYKFMKQYVPEELWERLMSTYNMDSYPHMWESFEQCMALFREVSSEVACQLDYQYPLYDEKISNYVIRQKKKYGIEDDNK
>NC_015738|2795989:2799932|2795989_2796727_+|WP_002292226.1|DBSCAN-SWA
MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHAKVNNLSTVTYEQVLSIFNSYLLFNGRK
>NC_015738|2795989:2799932|2796872_2797151_+|WP_074118312.1|DBSCAN-SWA
MPTKRSGPLVGKCPKCGNNIVLKKSFYGCSNYPECTFTLAEHFRKKKLTKTNVKELLEGKETLVKGIKTKDRKSYNAVVKIGEKGYIDFIYV
>NC_015738|2795989:2799932|2798669_2798909_+|WP_071585656.1|DBSCAN-SWA
MISLLGKLIYPNLENGIVIPSDKEKMIALANKYIEKENVDALILACTELPLAIKPEDVNVPIVNTTQVHINAIYQYAIR
>NC_015738|2795989:2799932|2797532_2797805_+|WP_000301765.1|DBSCAN-SWA
MAVTYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYSLEELQAVHEYWRSMNRYSKQVLNKEKVA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002292226.1|2795989_2796727_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	E4ZFQ0	Streptococcus_phage	1.4e-134	99.6
WP_074118312.1|2796872_2797151_+	topoisomerase DNA-binding C4 zinc finger domain-containing protein	A0A1X9I6W8	Streptococcus_phage	3.5e-38	92.7
WP_000527317.1|2797306_2797516_+	peptide-binding protein	A0A1X9I6D5	Streptococcus_phage	6.3e-32	100.0
WP_000301765.1|2797532_2797805_+	antitoxin	A0A1X9I6E5	Streptococcus_phage	5.0e-05	100.0
WP_007857419.1|2797806_2798673_+	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	3.2e-61	48.2
WP_071585656.1|2798669_2798909_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_001255868.1|2799065_2799932_+	aminoglycoside 6-adenylyltransferase AadE	E4ZFP8	Streptococcus_phage	7.5e-103	63.7