CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015924	Salmonella enterica subsp. enterica serovar Newport str. Levine 15 chromosome, complete genome	3 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j,RT	0	9	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015924_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015924_1

588686-588786

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAACGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015924_1

>merge|NZ_CP015924|1|588686-588786|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAAGGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGCGGTCGTGGTGATGGTCGTCGCTTCAGCGGCGAACGTCGTGAA

>NZ_CP015924|1|1|588686-588786|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAA	GGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGCGGTCGTGGTGATGGTCGTC
GCTTCAGCGGCGAACGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015924.1\|WP_000089674.1\|582042_582987_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP015924.1\|WP_001532495.1\|596053_596689_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP015924.1\|WP_010723222.1\|586883_586964_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP015924.1\|WP_000928379.1\|594626_594944_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP015924.1\|WP_000133064.1\|578742_581421_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP015924.1\|WP_001670767.1\|583648_585784_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP015924.1\|WP_000037599.1\|595404_595923_-\|protein/nucleic-acid-deglycase	unknown	unknown	gnl\|CDD\|153228
NZ_CP015924.1\|WP_001031038.1\|577215_578718_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP015924.1\|WP_000421309.1\|592406_593402_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP015924.1\|WP_000908562.1\|594136_594640_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP015924.1\|WP_000380403.1\|594981_595425_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP015924.1\|WP_000884721.1\|593618_594143_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP015924.1\|WP_000207657.1\|574764_576108_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP015924.1\|WP_014343907.1\|591519_592416_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP015924.1\|WP_000105461.1\|576735_577188_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP015924.1\|WP_000224381.1\|588999_590244_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP015924.1\|WP_000059465.1\|583137_583407_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP015924.1\|WP_001040200.1\|581641_582043_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP015924.1\|WP_000130411.1\|590334_591342_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP015924.1\|WP_000802069.1\|585893_586778_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875

Protein	Function_ID	Function_description	E-value
NZ_CP015924.1\|WP_000089674.1\|582042_582987_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP015924.1\|WP_001532495.1\|596053_596689_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.29768e-69
NZ_CP015924.1\|WP_010723222.1\|586883_586964_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.66225e-08
NZ_CP015924.1\|WP_000928379.1\|594626_594944_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.3214e-44
NZ_CP015924.1\|WP_000133064.1\|578742_581421_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP015924.1\|WP_001670767.1\|583648_585784_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP015924.1\|WP_000037599.1\|595404_595923_-\|protein/nucleic-acid-deglycase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	5.12939e-86
NZ_CP015924.1\|WP_001031038.1\|577215_578718_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP015924.1\|WP_000421309.1\|592406_593402_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.77757e-116
NZ_CP015924.1\|WP_000908562.1\|594136_594640_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NZ_CP015924.1\|WP_000380403.1\|594981_595425_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	5.44055e-99
NZ_CP015924.1\|WP_000884721.1\|593618_594143_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.82299e-84
NZ_CP015924.1\|WP_000207657.1\|574764_576108_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP015924.1\|WP_014343907.1\|591519_592416_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP015924.1\|WP_000105461.1\|576735_577188_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79
NZ_CP015924.1\|WP_000224381.1\|588999_590244_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP015924.1\|WP_000059465.1\|583137_583407_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54
NZ_CP015924.1\|WP_001040200.1\|581641_582043_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	9.5207e-53
NZ_CP015924.1\|WP_000130411.1\|590334_591342_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP015924.1\|WP_000802069.1\|585893_586778_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0

>NZ_CP015924.1|WP_010723222.1|586883_586964_+|protein-YrbN
MKIADQFHDELCRLAAINFEAHVLHG
>NZ_CP015924.1|WP_000802069.1|585893_586778_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NZ_CP015924.1|WP_001670767.1|583648_585784_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE
>NZ_CP015924.1|WP_000059465.1|583137_583407_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP015924.1|WP_000089674.1|582042_582987_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA
>NZ_CP015924.1|WP_001040200.1|581641_582043_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMSRDLAYAKVFVTFLNDQDEAAVKNGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NZ_CP015924.1|WP_000133064.1|578742_581421_+|translation-initiation-factor-IF-2
MTDVTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NZ_CP015924.1|WP_001031038.1|577215_578718_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP015924.1|WP_000105461.1|576735_577188_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP015924.1|WP_000207657.1|574764_576108_-|argininosuccinate-synthase
MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEVVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKPERLTMEKGDSVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKGK
>NZ_CP015924.1|WP_000224381.1|588999_590244_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNIVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVTPTTLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALVLYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPMIGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIVLILLFGVGNALVHILSSFNLLPVYQ
>NZ_CP015924.1|WP_000130411.1|590334_591342_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIPFSALDLAPIPEGASAKEAFTHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEQVPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTQFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFWSPSEQYGVQQALSMSLVGDKAKVRHGLESILRETQADEIMVNGQIFDHQARLHSFDLAMDVKQELLG
>NZ_CP015924.1|WP_014343907.1|591519_592416_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVVLSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPLPLAAHSDCNGYWKRLAGLELQA
>NZ_CP015924.1|WP_000421309.1|592406_593402_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP015924.1|WP_000884721.1|593618_594143_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMKNSPETKQTSVGEPC
>NZ_CP015924.1|WP_000908562.1|594136_594640_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NZ_CP015924.1|WP_000928379.1|594626_594944_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>NZ_CP015924.1|WP_000380403.1|594981_595425_+|YhbP-family-protein
MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALYLLTDDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYLRRFPVARGLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA
>NZ_CP015924.1|WP_000037599.1|595404_595923_-|protein/nucleic-acid-deglycase
MSKKIAVLITDEFEDSEFTSPAAEFRQAGHEVITIEKEAGKTVKGKKGEASVTIDKAIDDVRPDEFDALLLPGGHSPDYLRGDSRFVDFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>NZ_CP015924.1|WP_001532495.1|596053_596689_+|NAD(P)H-binding-protein
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMVVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAG

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Crispr_ID: NZ_CP015924_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015924_2

947650-948654

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

16 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP015924_2

>merge|NZ_CP015924|2|947650-948654|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCGTATTTCGATTGTCTGGACATTTCGTACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTTCCTGCTGATTTTCTGCGTCTACTGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGAATATGATTTATATAGAACCAATGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGCGTGTGTTGTTGAGGATCAGTCTGGAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGCCATGTTCTTTTCCCTCTAAAAAATCCGGTGTTCCCCGCGCCAGCGGGGATAAACCCGTTGCTCAAAAAACTGAACGAGGGTAACTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAACAGAAGAACGGCAAGCGGCACCTCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCCGTCAGGTTGGATCGGATGGCATTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTTCATTGCGCAGGGTATGCAGTCGGTTTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCAGCGCGGTATTGAGGCCGGGGACCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTACTTTATTATCTCTCGCATAGACCCGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTCATTTTAAAGAATCCCGTTAAACAACACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP015924|2|1|947650-948593|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGTATTTCGATTGTCTGGACATTTCGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTTCCTGCTGATTTTCTGCGTCTACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAATATGATTTATATAGAACCAATGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACTTTATTATCTCTCGCATAGACCCGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCATTTTAAAGAATCCCGTTAAACAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP015924|2|2|947650-948654|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGTATTTCGATTGTCTGGACATTTCGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTTCCTGCTGATTTTCTGCGTCTACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAATATGATTTATATAGAACCAATGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACTTTATTATCTCTCGCATAGACCCGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCATTTTAAAGAATCCCGTTAAACAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP015924|2|1|947650-948654|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGTATTTCGATTGTCTGGACATTTCGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTTCCTGCTGATTTTCTGCGTCTACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAATATGATTTATATAGAACCAATGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACTTTATTATCTCTCGCATAGACCCGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCATTTTAAAGAATCCCGTTAAACAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015924.1\|WP_000210924.1\|950422_952222_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP015924.1\|WP_001532579.1\|941435_941732_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP015924.1\|WP_000480218.1\|941113_941470_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP015924.1\|WP_000226838.1\|938795_941030_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP015924.1\|WP_000186400.1\|934634_937391_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP015924.1\|WP_000368586.1\|959028_960588_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP015924.1\|WP_000080405.1\|954009_954744_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP015924.1\|WP_000210449.1\|942499_943300_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP015924.1\|WP_000029748.1\|956353_959017_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP015924.1\|WP_000108313.1\|949636_949999_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP015924.1\|WP_001290655.1\|952221_953934_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP015924.1\|WP_001199961.1\|946681_947353_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP015924.1\|WP_000210863.1\|943527_945165_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP015924.1\|WP_000206421.1\|961146_962205_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP015924.1\|WP_001208002.1\|948751_949549_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP015924.1\|WP_001145544.1\|954956_955910_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP015924.1\|WP_000706493.1\|933448_934591_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP015924.1\|WP_000046856.1\|937448_938744_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP015924.1\|WP_000029526.1\|960584_961133_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP015924.1\|WP_000036734.1\|945247_946546_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
NZ_CP015924.1\|WP_000210924.1\|950422_952222_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP015924.1\|WP_001532579.1\|941435_941732_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
NZ_CP015924.1\|WP_000480218.1\|941113_941470_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP015924.1\|WP_000226838.1\|938795_941030_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP015924.1\|WP_000186400.1\|934634_937391_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP015924.1\|WP_000368586.1\|959028_960588_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	5.17383e-173
NZ_CP015924.1\|WP_000080405.1\|954009_954744_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.61797e-139
NZ_CP015924.1\|WP_000210449.1\|942499_943300_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NZ_CP015924.1\|WP_000029748.1\|956353_959017_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP015924.1\|WP_000108313.1\|949636_949999_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP015924.1\|WP_001290655.1\|952221_953934_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP015924.1\|WP_001199961.1\|946681_947353_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP015924.1\|WP_000210863.1\|943527_945165_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP015924.1\|WP_000206421.1\|961146_962205_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	9.1402e-138
NZ_CP015924.1\|WP_001208002.1\|948751_949549_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP015924.1\|WP_001145544.1\|954956_955910_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP015924.1\|WP_000706493.1\|933448_934591_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP015924.1\|WP_000046856.1\|937448_938744_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP015924.1\|WP_000029526.1\|960584_961133_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.80691e-33
NZ_CP015924.1\|WP_000036734.1\|945247_946546_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>NZ_CP015924.1|WP_001199961.1|946681_947353_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP015924.1|WP_000036734.1|945247_946546_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP015924.1|WP_000210863.1|943527_945165_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP015924.1|WP_000210449.1|942499_943300_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP015924.1|WP_001532579.1|941435_941732_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP015924.1|WP_000480218.1|941113_941470_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP015924.1|WP_000226838.1|938795_941030_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP015924.1|WP_000046856.1|937448_938744_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP015924.1|WP_000186400.1|934634_937391_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP015924.1|WP_000706493.1|933448_934591_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATVGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP015924.1|WP_001208002.1|948751_949549_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP015924.1|WP_000108313.1|949636_949999_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP015924.1|WP_000210924.1|950422_952222_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDELGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP015924.1|WP_001290655.1|952221_953934_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP015924.1|WP_000080405.1|954009_954744_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP015924.1|WP_001145544.1|954956_955910_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP015924.1|WP_000029748.1|956353_959017_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMEKTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCVAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP015924.1|WP_000368586.1|959028_960588_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP015924.1|WP_000029526.1|960584_961133_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NZ_CP015924.1|WP_000206421.1|961146_962205_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA

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Crispr_ID: NZ_CP015924_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015924_3

964901-965234

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

5 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP015924_3

>merge|NZ_CP015924|3|964901-965234|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGATTATGTCCTCTAAAGACTGGCTAATCACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGCCCTGCGTGATTTTGAAAATCTGGTGGAGTGTTCCCCGCGCCAGCGGGGATAAGCCGTTGAATACGTCGCGATACCAGTCACTCCGGAAGTCTTCCCCGCGCTAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP015924|3|2|964901-965173|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATTATGTCCTCTAAAGACTGGCTAATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCCTGCGTGATTTTGAAAATCTGGTGGA
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	TTGAATACGTCGCGATACCAGTCACTCCGGAA
GTCTTCCCCGCGCTAGCGGGGATAAACCG

>NZ_CP015924|3|3|964901-965234|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATTATGTCCTCTAAAGACTGGCTAATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCCTGCGTGATTTTGAAAATCTGGTGGA
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	TTGAATACGTCGCGATACCAGTCACTCCGGAA
GTCTTCCCCGCGCTAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP015924|3|2|964901-965234|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATTATGTCCTCTAAAGACTGGCTAATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCCTGCGTGATTTTGAAAATCTGGTGGA
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	TTGAATACGTCGCGATACCAGTCACTCCGGAA
GTCTTCCCCGCGCTAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015924.1\|WP_000517480.1\|970059_970371_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP015924.1\|WP_001518648.1\|964510_964804_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP015924.1\|WP_001219244.1\|971099_971579_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP015924.1\|WP_000490481.1\|965248_966295_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP015924.1\|WP_000741650.1\|970389_971100_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP015924.1\|WP_000206421.1\|961146_962205_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP015924.1\|WP_001537530.1\|969545_969869_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP015924.1\|WP_000368586.1\|959028_960588_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP015924.1\|WP_000080405.1\|954009_954744_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP015924.1\|WP_001092256.1\|967463_968903_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP015924.1\|WP_000029748.1\|956353_959017_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP015924.1\|WP_001221537.1\|972605_973367_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP015924.1\|WP_000144835.1\|963590_964511_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP015924.1\|WP_000372381.1\|966545_967454_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP015924.1\|WP_001173663.1\|968889_969495_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP015924.1\|WP_000085110.1\|962215_962962_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP015924.1\|WP_001145544.1\|954956_955910_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP015924.1\|WP_000029526.1\|960584_961133_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP015924.1\|WP_000281481.1\|962943_963594_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP015924.1\|WP_000134246.1\|971575_972625_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884

Protein	Function_ID	Function_description	E-value
NZ_CP015924.1\|WP_000517480.1\|970059_970371_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP015924.1\|WP_001518648.1\|964510_964804_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP015924.1\|WP_001219244.1\|971099_971579_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP015924.1\|WP_000490481.1\|965248_966295_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP015924.1\|WP_000741650.1\|970389_971100_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NZ_CP015924.1\|WP_000206421.1\|961146_962205_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	9.1402e-138
NZ_CP015924.1\|WP_001537530.1\|969545_969869_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP015924.1\|WP_000368586.1\|959028_960588_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	5.17383e-173
NZ_CP015924.1\|WP_000080405.1\|954009_954744_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.61797e-139
NZ_CP015924.1\|WP_001092256.1\|967463_968903_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP015924.1\|WP_000029748.1\|956353_959017_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP015924.1\|WP_001221537.1\|972605_973367_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
NZ_CP015924.1\|WP_000144835.1\|963590_964511_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.09819e-157
NZ_CP015924.1\|WP_000372381.1\|966545_967454_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP015924.1\|WP_001173663.1\|968889_969495_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP015924.1\|WP_000085110.1\|962215_962962_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.38373e-47
NZ_CP015924.1\|WP_001145544.1\|954956_955910_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP015924.1\|WP_000029526.1\|960584_961133_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.80691e-33
NZ_CP015924.1\|WP_000281481.1\|962943_963594_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	6.2871e-76
NZ_CP015924.1\|WP_000134246.1\|971575_972625_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0

>NZ_CP015924.1|WP_001518648.1|964510_964804_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP015924.1|WP_000144835.1|963590_964511_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIKPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP015924.1|WP_000281481.1|962943_963594_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIHREKSRQMIQFSSVDYTGVLVLNDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP015924.1|WP_000085110.1|962215_962962_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP015924.1|WP_000206421.1|961146_962205_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP015924.1|WP_000029526.1|960584_961133_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NZ_CP015924.1|WP_000368586.1|959028_960588_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP015924.1|WP_000029748.1|956353_959017_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMEKTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCVAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP015924.1|WP_001145544.1|954956_955910_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP015924.1|WP_000080405.1|954009_954744_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP015924.1|WP_000490481.1|965248_966295_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP015924.1|WP_000372381.1|966545_967454_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDHFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP015924.1|WP_001092256.1|967463_968903_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP015924.1|WP_001173663.1|968889_969495_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP015924.1|WP_001537530.1|969545_969869_+|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP015924.1|WP_000517480.1|970059_970371_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP015924.1|WP_000741650.1|970389_971100_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP015924.1|WP_001219244.1|971099_971579_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP015924.1|WP_000134246.1|971575_972625_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP015924.1|WP_001221537.1|972605_973367_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP015924_2	2.2\|947740\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947740-947771	32	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	824700-824731	8	0.75
NZ_CP015924_2	2.5\|947923\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947923-947954	32	NZ_CP042626	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence	1117-1148	8	0.75
NZ_CP015924_3	3.1\|964930\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	964930-964961	32	NZ_CP032319	Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence	4010-4041	8	0.75
NZ_CP015924_2	2.1\|947679\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947679-947710	32	MT711528	Escherichia phage vB_EcoS_fTaEco03, complete genome	12261-12292	9	0.719
NZ_CP015924_2	2.1\|947679\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947679-947710	32	MT711525	Escherichia phage vB_EcoS_fKuEco01, complete genome	11823-11854	9	0.719
NZ_CP015924_2	2.1\|947679\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947679-947710	32	GU196278	Escherichia phage K1H, complete genome	12039-12070	9	0.719
NZ_CP015924_2	2.1\|947679\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947679-947710	32	NC_027993	Escherichia phage K1G, complete genome	13924-13955	9	0.719
NZ_CP015924_2	2.1\|947679\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947679-947710	32	MT711527	Escherichia phage vB_EcoS_fTaEco01, complete genome	11822-11853	9	0.719
NZ_CP015924_2	2.3\|947801\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947801-947832	32	NC_011255	Borrelia recurrentis A1 plasmid pl35, complete sequence	27906-27937	9	0.719
NZ_CP015924_2	2.3\|947801\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947801-947832	32	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	31225-31256	9	0.719
NZ_CP015924_2	2.3\|947801\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947801-947832	32	NZ_CP032297	Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence	360899-360930	9	0.719
NZ_CP015924_2	2.3\|947801\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947801-947832	32	NZ_CP034837	Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence	234035-234066	9	0.719
NZ_CP015924_2	2.11\|948289\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	948289-948320	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NZ_CP015924_3	3.1\|964930\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	964930-964961	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	264920-264951	9	0.719
NZ_CP015924_3	3.4\|965113\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	965113-965144	32	NZ_CP050096	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence	151458-151489	9	0.719
NZ_CP015924_3	3.4\|965113\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	965113-965144	32	NZ_CP050102	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence	132694-132725	9	0.719
NZ_CP015924_3	3.4\|965113\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	965113-965144	32	NZ_CP050107	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence	169943-169974	9	0.719
NZ_CP015924_3	3.4\|965113\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	965113-965144	32	NZ_CP050112	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence	169942-169973	9	0.719
NZ_CP015924_3	3.4\|965113\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	965113-965144	32	NZ_CP048285	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence	30547-30578	9	0.719
NZ_CP015924_2	2.5\|947923\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947923-947954	32	LR026976	Bacillus pumilus isolate 1 genome assembly, plasmid: p576	23626-23657	10	0.688
NZ_CP015924_2	2.5\|947923\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	947923-947954	32	NC_022882	Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence	54509-54540	10	0.688
NZ_CP015924_2	2.16\|948594\|32\|NZ_CP015924\|CRISPRCasFinder,CRT	948594-948625	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NZ_CP015924_3	3.1\|964930\|32\|NZ_CP015924\|PILER-CR,CRISPRCasFinder,CRT	964930-964961	32	NZ_CP006373	Aureimonas sp. AU20 plasmid pAU20f, complete sequence	26111-26142	10	0.688
NZ_CP015924_3	3.5\|965174\|32\|NZ_CP015924\|CRISPRCasFinder,CRT	965174-965205	32	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	47822-47853	11	0.656

1. spacer 2.2|947740|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 8, identity: 0.75

tgcttcctgctgattttctgcgtctactggat	CRISPR spacer
ctcatcctgcagattttcttcgtctactatgt	Protospacer
. * ****** ******** ********. .*

2. spacer 2.5|947923|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042626 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence) position: , mismatch: 8, identity: 0.75

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
ataaacatgattttttccctctaaaaaatccc	Protospacer
  .. **** *.*******************

3. spacer 3.1|964930|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032319 (Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ccagcctg--tagcgtgggggcgttgggtagcct	CRISPR spacer
--ggtgtggccagcgtggtagcgttgggtagcct	Protospacer
  .*. **  .******* .**************

4. spacer 2.1|947679|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to MT711528 (Escherichia phage vB_EcoS_fTaEco03, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

5. spacer 2.1|947679|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to MT711525 (Escherichia phage vB_EcoS_fKuEco01, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

6. spacer 2.1|947679|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to GU196278 (Escherichia phage K1H, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

7. spacer 2.1|947679|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NC_027993 (Escherichia phage K1G, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

8. spacer 2.1|947679|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to MT711527 (Escherichia phage vB_EcoS_fTaEco01, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

9. spacer 2.3|947801|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NC_011255 (Borrelia recurrentis A1 plasmid pl35, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
aaaaaatatgatttatatagaaataatttata	Protospacer
. *.****************** .***  *.

10. spacer 2.3|947801|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
aaaaaatatgatttatatagaaataatttata	Protospacer
. *.****************** .***  *.

11. spacer 2.3|947801|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
caccaataggatttatattgaaccaataatcc	Protospacer
    **** ********* ********.* *.

12. spacer 2.3|947801|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
caccaataggatttatattgaaccaataatcc	Protospacer
    **** ********* ********.* *.

13. spacer 2.11|948289|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

14. spacer 3.1|964930|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagcctgtagcgtgggggcgttgggtagcct	CRISPR spacer
cggccctgtagcggaggggcgttgggtcccgg	Protospacer
* . ********* .************  *

15. spacer 3.4|965113|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050096 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

16. spacer 3.4|965113|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050102 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

17. spacer 3.4|965113|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050107 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

18. spacer 3.4|965113|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050112 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

19. spacer 3.4|965113|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048285 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

20. spacer 2.5|947923|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to LR026976 (Bacillus pumilus isolate 1 genome assembly, plasmid: p576) position: , mismatch: 10, identity: 0.688

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
ctctttttgatcttttcactctaaaaaatctc	Protospacer
*   .. ** ******* ************.

21. spacer 2.5|947923|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NC_022882 (Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence) position: , mismatch: 10, identity: 0.688

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
aaacacgagttcttttcgctgtaaaaaatcca	Protospacer
 ..  *. ********* ** **********.

22. spacer 2.16|948594|32|NZ_CP015924|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

23. spacer 3.1|964930|32|NZ_CP015924|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006373 (Aureimonas sp. AU20 plasmid pAU20f, complete sequence) position: , mismatch: 10, identity: 0.688

ccagcctgtagcgtgggggcgttgggtagcct	CRISPR spacer
gaacgtcttagcgtcggggcgttgggtcgcca	Protospacer
  *  .. ****** ************ ***

24. spacer 3.5|965174|32|NZ_CP015924|CRISPRCasFinder,CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aggggcgttccgcagtcggcaagggctgaaaa	CRISPR spacer
tcgggcatcccgcagtcggcaagggtgcggcg	Protospacer
  ****.*.****************.  .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1140750 : 1238446

Enterobacteria_phage(28.3%)

protease,tail,terminase,tRNA,holin,portal,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000537359.1\|1140750_1141926_-	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	1.4e-147	67.4
WP_001061331.1\|1142131_1142701_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	3.7e-90	81.3
WP_000210516.1\|1142702_1143143_-	hypothetical protein	A0A088CE95	Shigella_phage	3.1e-12	40.3
WP_000840609.1\|1143146_1143620_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.1e-66	78.1
WP_000125081.1\|1143619_1143934_-	hypothetical protein	I6RSM9	Salmonella_phage	3.4e-21	85.0
WP_001253786.1\|1143930_1144107_-	hypothetical protein	NA	NA	NA	NA
WP_000120457.1\|1144094_1144634_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	9.5e-80	81.0
WP_000845984.1\|1145078_1145738_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	2.5e-74	63.1
WP_000278289.1\|1145830_1146034_+	Cro/Cl family transcriptional regulator	H9C161	Pectobacterium_phage	2.1e-16	67.8
WP_000526197.1\|1146056_1146608_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.7e-65	67.2
WP_024135506.1\|1146780_1146960_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.3e-14	73.1
WP_000104991.1\|1146949_1147807_+	conserved phage C-terminal domain-containing protein	A0A1C9IHW0	Salmonella_phage	3.1e-69	87.2
WP_000174329.1\|1147803_1148685_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	8.4e-134	77.7
WP_001206910.1\|1148677_1150612_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	3.9e-200	53.8
WP_000780154.1\|1150608_1151007_+	RusA family crossover junction endodeoxyribonuclease	Q8HA93	Salmonella_phage	4.7e-60	90.2
WP_031607717.1\|1151111_1151978_+	ORF6N domain-containing protein	F1C5A3	Cronobacter_phage	3.5e-60	45.9
WP_000609697.1\|1152977_1153547_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.5e-46	54.4
WP_000417508.1\|1153737_1154313_+	hypothetical protein	NA	NA	NA	NA
WP_001670091.1\|1154499_1154940_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	9.6e-14	31.5
WP_001283171.1\|1155101_1155488_+\|holin	phage holin family protein	A0A192Y8P2	Salmonella_phage	1.0e-56	93.0
WP_000250463.1\|1155474_1155756_+\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	3.1e-18	50.0
WP_001076629.1\|1155755_1156370_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.9e-92	80.9
WP_000522146.1\|1156377_1156647_+	hypothetical protein	G8C7W1	Escherichia_phage	2.2e-21	69.0
WP_001100261.1\|1156787_1157018_+	hypothetical protein	NA	NA	NA	NA
WP_000120194.1\|1157109_1157424_-	hypothetical protein	NA	NA	NA	NA
WP_000761930.1\|1157933_1158260_+	hypothetical protein	M9NZE9	Enterobacteria_phage	2.9e-07	80.0
WP_001670093.1\|1158443_1158932_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	6.3e-75	90.7
WP_001118990.1\|1158931_1161034_+\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	86.6
WP_001082414.1\|1161030_1161246_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.5e-25	82.9
WP_000054308.1\|1161242_1162751_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	4.2e-258	86.7
WP_001125851.1\|1162695_1164720_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	84.7
WP_001097009.1\|1164811_1165138_+	DUF2190 family protein	K7PJY3	Enterobacterial_phage	2.4e-30	60.2
WP_000933904.1\|1165130_1165406_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.6e-25	61.5
WP_000023109.1\|1165418_1165973_+\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	2.4e-62	76.7
WP_000797819.1\|1165969_1166368_+\|tail	tail protein	K7PHM6	Enterobacterial_phage	6.8e-43	62.0
WP_000211139.1\|1166375_1167113_+	Ig-like domain-containing protein	O64327	Escherichia_phage	3.6e-90	66.9
WP_000479023.1\|1167149_1167557_+\|tail	phage minor tail protein G	K7PM17	Enterobacteria_phage	3.8e-25	57.9
WP_071529728.1\|1167565_1167886_+\|tail	phage tail assembly protein T	K7PHE1	Enterobacteria_phage	2.1e-34	69.8
WP_000079422.1\|1167863_1170380_+\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	1.0e-309	69.2
WP_000963482.1\|1170383_1170731_+\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	1.0e-39	69.6
WP_000056207.1\|1170727_1171483_+\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	1.8e-129	85.3
WP_001249174.1\|1171484_1172195_+	C40 family peptidase	K7P6F5	Enterobacteria_phage	1.1e-136	90.7
WP_000709674.1\|1172224_1172566_+	hypothetical protein	K7PLP0	Enterobacteria_phage	5.6e-54	92.9
WP_000659016.1\|1172609_1173215_+\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	1.4e-100	97.0
WP_001162257.1\|1173268_1176472_+	host specificity protein J	O64335	Escherichia_phage	0.0e+00	88.7
WP_001113924.1\|1176473_1177433_+	hypothetical protein	H6WRW5	Salmonella_phage	2.1e-175	94.4
WP_001272642.1\|1177443_1178625_+	hypothetical protein	S4TSP4	Salmonella_phage	1.2e-55	68.9
WP_000497432.1\|1178848_1179091_-	DinI family protein	Q6UAW0	Klebsiella_phage	3.4e-29	76.6
WP_000506722.1\|1179411_1179801_+	hypothetical protein	Q1MVE7	Enterobacteria_phage	3.9e-51	71.3
WP_001670096.1\|1179988_1181194_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_000342601.1\|1181922_1183086_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_000196135.1\|1183093_1185274_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_000533845.1\|1185270_1186680_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_001237683.1\|1186744_1198219_-	biofilm-associated protein BapA	NA	NA	NA	NA
WP_001518569.1\|1198833_1199316_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000242603.1\|1199465_1199942_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001112990.1\|1199931_1200222_+	RnfH family protein	NA	NA	NA	NA
WP_001203445.1\|1200387_1200726_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880965.1\|1200874_1202536_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059160.1\|1202621_1203500_-	NAD(+) kinase	NA	NA	NA	NA
WP_001518875.1\|1203622_1204213_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001287924.1\|1204247_1204853_-	hypothetical protein	NA	NA	NA	NA
WP_127172650.1\|1204973_1206260_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001537507.1\|1206279_1207071_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460052.1\|1207236_1208598_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256453.1\|1208941_1209190_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043266.1\|1209208_1209757_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000469812.1\|1209801_1210569_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065257.1\|1210609_1210957_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_001030985.1\|1211113_1212334_-	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_001212379.1\|1212326_1212845_-	YfiR family protein	NA	NA	NA	NA
WP_001168062.1\|1213284_1214355_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_000225185.1\|1214364_1215486_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_000210990.1\|1215543_1216452_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000200080.1\|1216412_1217573_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_010989056.1\|1217672_1217720_-	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_000178449.1\|1217823_1218162_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000197660.1\|1218433_1219171_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079130.1\|1219302_1220283_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000992632.1\|1220279_1221011_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235092.1\|1221140_1223714_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
WP_000985653.1\|1229623_1230079_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
WP_000807810.1\|1230182_1231484_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.1e-44	30.4
WP_001264473.1\|1231480_1231804_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_000949286.1\|1231848_1233204_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000082639.1\|1233318_1235979_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000183642.1\|1236032_1236713_-\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_001098732.1\|1236785_1237205_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
WP_000997374.1\|1237408_1238446_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_2

1243085 : 1296015

Salmonella_phage(37.84%)

protease,tail,terminase,head,lysis,tRNA,holin,integrase,portal,transposase

attL 1237418:1237432|attR 1251062:1251076

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1237418:1237432	attL	NA	NA	NA	NA
WP_000083347.1\|1243085_1243823_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000989186.1\|1243807_1245430_-	L-aspartate oxidase	NA	NA	NA	NA
WP_014344135.1\|1245693_1245858_+	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000003307.1\|1245854_1246430_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_001168374.1\|1246461_1247112_+	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000812017.1\|1247111_1248068_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_000589049.1\|1248064_1248544_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_001007939.1\|1249040_1250270_+\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	2.9e-233	94.4
WP_001670787.1\|1250247_1250532_-	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
WP_001237031.1\|1250572_1250812_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_077248255.1\|1250854_1252012_-	recombinase RecT	S4TTE8	Salmonella_phage	3.9e-216	99.5
1251062:1251076	attR	NA	NA	NA	NA
WP_072599057.1\|1251974_1254902_-	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	94.0
WP_001574209.1\|1255608_1256007_-	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.2e-18	56.0
WP_001033911.1\|1256105_1256360_+	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
WP_001533160.1\|1256346_1256841_+	hypothetical protein	NA	NA	NA	NA
WP_000729539.1\|1256887_1257895_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	1.2e-123	67.8
WP_157872077.1\|1257806_1258349_+	replication protein	A0A0U2JGJ0	Escherichia_phage	7.1e-67	74.8
WP_000089415.1\|1258363_1258759_+	DUF977 family protein	A0A088CBK9	Shigella_phage	9.8e-18	38.8
WP_000529512.1\|1259045_1260176_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_001237395.1\|1260572_1262552_+	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
WP_000911593.1\|1263240_1263489_+	hypothetical protein	NA	NA	NA	NA
WP_000929790.1\|1263551_1264154_+	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001096553.1\|1264362_1264974_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.7e-91	98.5
WP_000801757.1\|1264970_1265111_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001097240.1\|1265107_1265797_+	antitermination protein	I6PDF8	Cronobacter_phage	1.1e-59	52.4
WP_000657897.1\|1266286_1266475_+	hypothetical protein	NA	NA	NA	NA
WP_001110783.1\|1266689_1267376_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
WP_001574216.1\|1267651_1267981_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_000984581.1\|1267964_1268417_+	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
WP_001533543.1\|1268434_1268887_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000669690.1\|1269122_1269524_-	PPC domain-containing protein	NA	NA	NA	NA
WP_001102153.1\|1269810_1270356_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000201415.1\|1272241_1272445_+	gpW family protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000831821.1\|1272441_1274022_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_001189503.1\|1274011_1275508_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
WP_000011260.1\|1275520_1275868_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_000201486.1\|1277007_1277367_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_000677089.1\|1277786_1278365_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000479607.1\|1280853_1281249_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_010989052.1\|1281245_1281584_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000372072.1\|1281555_1284651_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
WP_000447369.1\|1284653_1284983_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_001152689.1\|1284992_1285691_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
WP_000662739.1\|1285697_1286435_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
WP_000246126.1\|1286332_1286980_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
WP_000514917.1\|1287041_1290404_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
WP_000178853.1\|1290442_1290685_+	hypothetical protein	NA	NA	NA	NA
WP_001144691.1\|1290738_1293111_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
WP_000593433.1\|1293107_1293932_+	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
WP_000143154.1\|1293921_1294500_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
WP_010989049.1\|1294596_1294824_-	phage virulence factor PagK family protein	NA	NA	NA	NA
WP_001738443.1\|1294930_1295143_+	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
WP_001526383.1\|1295895_1296015_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1761101 : 1770272

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569165.1\|1761101_1762049_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
WP_000824855.1\|1762032_1762764_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1762744_1762852_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1762911_1763643_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1\|1763865_1765551_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|1765547_1766267_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1766313_1766781_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001265355.1\|1766837_1767368_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|1767539_1767998_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195330.1\|1768238_1770272_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1844758 : 1855264

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001111836.1\|1844758_1846162_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
WP_000981469.1\|1846339_1847233_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697840.1\|1847609_1848695_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_001023659.1\|1848694_1849594_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000857530.1\|1849641_1850520_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
WP_000973714.1\|1850520_1851072_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
WP_000648783.1\|1852066_1852840_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565902.1\|1852844_1853924_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
WP_000126352.1\|1853950_1855264_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_5

1948406 : 1999656

Salmonella_phage(90.16%)

plate,protease,tail,terminase,capsid,head,lysis,holin,integrase,portal

attL 1946158:1946172|attR 1957272:1957286

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1946158:1946172	attL	NA	NA	NA	NA
WP_001219023.1\|1948406_1948931_-	peptidase	G9L6C4	Escherichia_phage	1.3e-36	77.7
WP_000598921.1\|1950240_1951038_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_000532847.1\|1951329_1952319_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
WP_001527041.1\|1952320_1952548_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	3.2e-37	100.0
WP_001061334.1\|1952587_1953157_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
WP_000208068.1\|1953160_1953994_-	hypothetical protein	Q8HAA7	Salmonella_phage	4.7e-163	100.0
WP_000065095.1\|1953990_1954608_-	ead/Ea22-like family protein	Q8HAA6	Salmonella_phage	2.6e-113	100.0
WP_000071070.1\|1954604_1955120_-	DUF262 domain-containing protein	Q8HAA5	Salmonella_phage	7.4e-98	100.0
WP_000764235.1\|1955116_1955347_-	hypothetical protein	Q8HAA4	Salmonella_phage	2.0e-34	100.0
WP_000008351.1\|1955417_1955957_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
WP_000551792.1\|1956051_1956969_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	1.4e-96	59.1
WP_000141749.1\|1957266_1957497_+	hypothetical protein	NA	NA	NA	NA
1957272:1957286	attR	NA	NA	NA	NA
WP_001020636.1\|1957909_1958605_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
WP_001191666.1\|1958702_1958927_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_000509731.1\|1958955_1959510_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
WP_170324263.1\|1959506_1961357_+	Rha family transcriptional regulator	Q8HA97	Salmonella_phage	1.3e-16	50.0
WP_000620702.1\|1961353_1961578_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_000061500.1\|1961574_1962393_+	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	2.8e-136	100.0
WP_001684745.1\|1962394_1962877_+	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	1.1e-87	100.0
WP_000066908.1\|1962876_1963770_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.6e-175	100.0
WP_001241579.1\|1963766_1964156_+	RusA family crossover junction endodeoxyribonuclease	Q8HA93	Salmonella_phage	3.7e-70	100.0
WP_001061457.1\|1964172_1965033_+	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	2.9e-163	100.0
WP_001202277.1\|1965040_1966030_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	4.9e-191	97.6
WP_000188927.1\|1966040_1966664_+	hypothetical protein	Q8HA89	Salmonella_phage	9.1e-119	100.0
WP_001527054.1\|1966796_1967054_+	hypothetical protein	Q8HA88	Salmonella_phage	5.2e-44	100.0
WP_014343859.1\|1966983_1967418_-	hypothetical protein	NA	NA	NA	NA
WP_001527046.1\|1967579_1967924_+\|holin	phage holin, lambda family	Q8HA87	Salmonella_phage	5.3e-44	100.0
WP_001005901.1\|1967926_1968541_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	9.3e-116	100.0
WP_001050825.1\|1968537_1969023_+\|lysis	lysis protein	Q8HA85	Salmonella_phage	5.9e-81	100.0
WP_000877027.1\|1969235_1969655_+	KilA-N domain-containing protein	Q8HA84	Salmonella_phage	4.8e-71	100.0
WP_001292890.1\|1969874_1970177_+	hypothetical protein	Q8HA83	Salmonella_phage	3.6e-52	100.0
WP_001135225.1\|1970237_1970588_+	HNH endonuclease	Q8HA82	Salmonella_phage	2.5e-65	100.0
WP_000929191.1\|1970713_1971208_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	4.6e-89	100.0
WP_000088182.1\|1971204_1972938_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	100.0
WP_000605609.1\|1972949_1973132_+	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
WP_000466254.1\|1973131_1974373_+\|portal	phage portal protein	Q8HAD4	Salmonella_phage	2.0e-242	99.8
WP_001193639.1\|1974350_1975001_+\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	1.5e-119	100.0
WP_000257528.1\|1975015_1976221_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	1.6e-223	100.0
WP_000601353.1\|1976271_1976472_+	hypothetical protein	Q8HAD1	Salmonella_phage	1.4e-28	100.0
WP_000927378.1\|1976474_1976798_+\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
WP_000702408.1\|1976794_1977199_+\|head	phage head closure protein	Q8HAC9	Salmonella_phage	1.4e-72	100.0
WP_001135697.1\|1977170_1977683_+	hypothetical protein	Q8HAC8	Salmonella_phage	4.6e-92	100.0
WP_000779218.1\|1977679_1978240_+	hypothetical protein	Q8HAC7	Salmonella_phage	3.0e-105	100.0
WP_000497739.1\|1978243_1978408_+	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	1.0e-24	100.0
WP_001007991.1\|1978397_1979894_+\|tail	phage tail sheath subtilisin-like domain-containing protein	Q8HAC5	Salmonella_phage	2.7e-278	100.0
WP_000515952.1\|1979893_1980250_+\|tail	phage tail tube protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_000588852.1\|1980246_1980573_+\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_000785385.1\|1980657_1982586_+\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.8
WP_000863818.1\|1982619_1983960_+	DNA circularization N-terminal domain-containing protein	A0A192Y5U9	Salmonella_phage	5.7e-251	99.6
WP_001066636.1\|1983956_1985015_+	hypothetical protein	Q8HAC0	Salmonella_phage	1.3e-202	100.0
WP_001273649.1\|1985014_1985548_+\|plate	phage baseplate assembly protein	Q8HAB9	Salmonella_phage	1.4e-96	100.0
WP_000605050.1\|1985552_1985966_+	phage GP46 family protein	Q8HAB8	Salmonella_phage	1.1e-75	100.0
WP_000785580.1\|1985958_1987038_+\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.5e-204	99.7
WP_001207832.1\|1987040_1987628_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_000554737.1\|1987614_1989177_+	hypothetical protein	Q8HAB4	Salmonella_phage	2.6e-287	100.0
WP_015701331.1\|1989146_1989746_+\|tail	tail fiber assembly protein	Q8HAB3	Salmonella_phage	5.9e-107	100.0
WP_000492926.1\|1990030_1991038_-	type III secretion system effector arginine glycosyltransferase	Q8HAB2	Salmonella_phage	7.9e-197	100.0
WP_001526483.1\|1991250_1991472_+	helix-turn-helix domain-containing protein	Q8HAB1	Salmonella_phage	1.2e-36	100.0
WP_001532308.1\|1992102_1992264_+	hypothetical protein	NA	NA	NA	NA
WP_000394197.1\|1992390_1992810_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457666.1\|1992812_1994081_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.3e-225	91.7
WP_000187976.1\|1994535_1994748_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.1e-21	70.0
WP_024131109.1\|1994758_1994947_+	hypothetical protein	NA	NA	NA	NA
WP_001080683.1\|1995204_1996416_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.3e-108	56.0
WP_000107430.1\|1997065_1997365_+	membrane protein	NA	NA	NA	NA
WP_000377048.1\|1997456_1998152_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.1e-07	27.1
WP_001157313.1\|1998225_1999656_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_6

2761181 : 2803310

Salmonella_phage(17.39%)

plate,tail,head,lysis,holin,integrase

attL 2752830:2752844|attR 2801997:2802011

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2752830:2752844	attL	NA	NA	NA	NA
WP_000143157.1\|2761181_2761766_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	2.8e-85	82.2
WP_000772814.1\|2761765_2763217_-\|tail	tail fiber protein	E5G6P0	Salmonella_phage	1.2e-41	69.6
WP_001181747.1\|2763206_2763809_-	DUF2612 domain-containing protein	A0A2R3UAM9	Myoviridae_environmental_samples	3.3e-33	38.9
WP_001293658.1\|2763810_2765052_-\|plate	baseplate J/gp47 family protein	A0A077KGW9	Edwardsiella_phage	1.2e-101	49.9
WP_001191865.1\|2765048_2765405_-	hypothetical protein	A0A077KCA1	Edwardsiella_phage	1.6e-19	49.1
WP_000068499.1\|2765417_2766095_-	oxidoreductase	A0A077KAY0	Edwardsiella_phage	5.4e-32	36.4
WP_000122818.1\|2766075_2766945_-	hypothetical protein	A0A077KC17	Edwardsiella_phage	9.1e-32	32.7
WP_000890115.1\|2766941_2767244_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
WP_000010345.1\|2767243_2767954_-	hypothetical protein	A0A077KGW3	Edwardsiella_phage	8.5e-28	34.6
WP_000741783.1\|2767950_2770122_-	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	1.1e-49	67.1
WP_000386822.1\|2770105_2770285_-	hypothetical protein	NA	NA	NA	NA
WP_000101346.1\|2770329_2770734_-	hypothetical protein	H9C0W7	Aeromonas_phage	1.8e-19	44.8
WP_000016413.1\|2770733_2771180_-	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	39.7
WP_001122279.1\|2771180_2772665_-	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	5.8e-95	40.4
WP_000094503.1\|2772645_2773191_-	hypothetical protein	NA	NA	NA	NA
WP_001048639.1\|2773175_2773541_-	hypothetical protein	A0A077KAW7	Edwardsiella_phage	3.0e-21	40.5
WP_000247615.1\|2773537_2774122_-	hypothetical protein	H9C0W2	Aeromonas_phage	3.2e-17	31.7
WP_000537612.1\|2774115_2774562_-	DUF4054 domain-containing protein	A0A068CGG9	Acinetobacter_phage	1.8e-15	43.1
WP_000829562.1\|2774567_2774915_-	hypothetical protein	A0A1X9SFA9	Acinetobacter_phage	2.1e-08	35.4
WP_001031911.1\|2774918_2775947_-	hypothetical protein	A0A219YBB0	Aeromonas_phage	8.7e-82	48.4
WP_001091402.1\|2775946_2776429_-	hypothetical protein	K4HYQ5	Acinetobacter_phage	5.8e-20	41.2
WP_000587352.1\|2776430_2777777_-	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	1.1e-68	36.5
WP_000552015.1\|2777773_2778463_-\|head	head morphogenesis protein	H9C0V1	Aeromonas_phage	1.0e-57	48.7
WP_000266182.1\|2778503_2780024_-	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	2.6e-106	43.9
WP_001130802.1\|2780023_2781643_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	1.9e-261	81.2
WP_001118124.1\|2781645_2782275_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	1.3e-107	97.6
WP_001288297.1\|2782339_2782753_-	hypothetical protein	NA	NA	NA	NA
WP_001533411.1\|2783053_2783242_-	DUF826 domain-containing protein	NA	NA	NA	NA
WP_086010415.1\|2783399_2783903_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	5.8e-55	78.5
WP_001208107.1\|2784220_2784760_-	lysozyme	S5MQK2	Escherichia_phage	5.7e-77	74.1
WP_001533331.1\|2784737_2785040_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_001533418.1\|2785289_2785757_+	DUF2441 domain-containing protein	NA	NA	NA	NA
WP_000690097.1\|2785768_2785987_-	hypothetical protein	NA	NA	NA	NA
WP_000658040.1\|2786140_2786329_-	hypothetical protein	NA	NA	NA	NA
WP_000155182.1\|2786571_2787123_-	ORF6N domain-containing protein	A0A0P0ZDQ5	Stx2-converting_phage	1.3e-55	94.8
WP_000211400.1\|2787385_2787697_-	ORF6N domain-containing protein	A0A0N7C203	Escherichia_phage	6.5e-41	74.4
WP_000639983.1\|2787962_2788517_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	5.7e-64	65.3
WP_000926968.1\|2788513_2788810_-	DUF1364 family protein	K7P7Q1	Enterobacteria_phage	1.6e-36	81.3
WP_000784711.1\|2788791_2788986_-	hypothetical protein	S4TNP0	Salmonella_phage	7.9e-13	61.5
WP_000940757.1\|2788982_2789582_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.9e-98	83.9
WP_000911593.1\|2789645_2789894_-	hypothetical protein	NA	NA	NA	NA
WP_001597144.1\|2790144_2790300_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.2e-14	84.3
WP_000687967.1\|2790503_2790776_-	hypothetical protein	NA	NA	NA	NA
WP_000533386.1\|2790772_2791168_-	DUF977 family protein	A0A088CBK9	Shigella_phage	3.7e-17	37.0
WP_162010736.1\|2791179_2791722_-	replication protein	A0A0U2JGJ0	Escherichia_phage	2.9e-68	73.9
WP_000729543.1\|2791633_2792641_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	5.1e-127	69.3
WP_024159654.1\|2792687_2793182_-	hypothetical protein	NA	NA	NA	NA
WP_001033909.1\|2793168_2793423_-	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
WP_001224472.1\|2793519_2793945_+	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	1.2e-13	56.3
WP_024133274.1\|2794388_2794568_-	hypothetical protein	NA	NA	NA	NA
WP_000613376.1\|2794998_2795283_+	hypothetical protein	K7PGY4	Enterobacteria_phage	5.1e-08	53.2
WP_000799629.1\|2795357_2795693_+	hypothetical protein	NA	NA	NA	NA
WP_000023731.1\|2795833_2798524_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	1.1e-115	74.9
WP_001126032.1\|2798516_2799347_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
WP_001033922.1\|2799382_2799703_+	hypothetical protein	A0A222YY67	Escherichia_phage	1.8e-33	59.2
WP_000066251.1\|2799695_2800028_+	hypothetical protein	S4TNP2	Salmonella_phage	8.8e-20	81.8
WP_000069466.1\|2800024_2800528_+	hypothetical protein	A0A075B8H2	Enterobacteria_phage	6.0e-36	92.3
WP_000089141.1\|2800577_2800814_+	excisionase	NA	NA	NA	NA
WP_000741322.1\|2800803_2801946_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21929	Phage_21	2.0e-172	79.7
WP_000444507.1\|2802059_2803310_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	90.7
2801997:2802011	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2951095 : 3050412

Salmonella_phage(38.18%)

protease,tail,terminase,capsid,head,lysis,tRNA,holin,portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024135496.1\|2951095_2951776_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	1.4e-83	72.0
WP_000374046.1\|2952395_2953055_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904446.1\|2953141_2953471_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|2953467_2953749_-	acylphosphatase	NA	NA	NA	NA
WP_000548081.1\|2953797_2954577_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000859410.1\|2954602_2955151_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140480.1\|2955365_2956577_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|2956634_2956952_+	heat shock protein HspQ	NA	NA	NA	NA
WP_001537782.1\|2956996_2957410_-	CoA-binding protein	NA	NA	NA	NA
WP_000847735.1\|2957583_2958246_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|2958340_2958799_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420505.1\|2958834_2960889_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_001261222.1\|2961012_2961459_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950881.1\|2961477_2963631_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202375.1\|2963617_2964223_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|2964439_2964949_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_001670727.1\|2965305_2966358_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|2966429_2966882_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156459.1\|2967067_2968828_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|2968896_2969415_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|2969514_2969682_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|2969937_2970501_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433414.1\|2970497_2972138_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333152.1\|2972142_2973396_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053051.1\|2973410_2975318_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	5.4e-53	29.8
WP_001086485.1\|2975330_2977439_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224076.1\|2977537_2978647_+	YcbX family protein	NA	NA	NA	NA
WP_001220671.1\|2978643_2979186_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291725.1\|2979351_2980362_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193785.1\|2980569_2983182_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
WP_000497441.1\|2983608_2983800_+	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_001525490.1\|2984070_2984757_+	hypothetical protein	NA	NA	NA	NA
WP_010989011.1\|2984741_2985041_+	hypothetical protein	NA	NA	NA	NA
WP_000334547.1\|2985109_2985736_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_001533476.1\|2986383_2987352_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.9e-194	99.7
WP_000143167.1\|2987827_2988409_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001144670.1\|2988408_2990847_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	9.2e-90	63.2
WP_000178851.1\|2990902_2991145_-	hypothetical protein	NA	NA	NA	NA
WP_072599065.1\|2991183_2994546_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.9
WP_000246126.1\|2994607_2995255_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
WP_000662739.1\|2995152_2995890_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
WP_001152689.1\|2995896_2996595_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
WP_000447369.1\|2996604_2996934_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_000372072.1\|2996936_3000032_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
WP_010989052.1\|3000003_3000342_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000479607.1\|3000338_3000734_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_000971954.1\|3000784_3001531_-	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000033885.1\|3001538_3001940_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000817263.1\|3002048_3003179_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
WP_000677089.1\|3003227_3003806_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000083294.1\|3003833_3004217_-\|head,tail	head-tail joining protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
WP_000201486.1\|3004227_3004587_-	DNA-packaging protein FI	NA	NA	NA	NA
WP_000522566.1\|3004644_3005673_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000011260.1\|3005727_3006075_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_001189503.1\|3006087_3007584_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
WP_000831821.1\|3007573_3009154_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_000201415.1\|3009150_3009354_-	gpW family protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000623091.1\|3009337_3011269_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
WP_001102153.1\|3011240_3011786_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000669690.1\|3012072_3012474_+	PPC domain-containing protein	NA	NA	NA	NA
WP_001533543.1\|3012709_3013162_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000984581.1\|3013179_3013632_-	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
WP_001574216.1\|3013615_3013945_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001110783.1\|3014220_3014907_+\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
WP_000657897.1\|3015121_3015310_-	hypothetical protein	NA	NA	NA	NA
WP_001097240.1\|3015799_3016489_-	antitermination protein	I6PDF8	Cronobacter_phage	1.1e-59	52.4
WP_000801757.1\|3016485_3016626_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001096553.1\|3016622_3017234_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.7e-91	98.5
WP_000929790.1\|3017442_3018045_-	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001217669.1\|3018459_3018693_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_023888896.1\|3018984_3019275_-	hypothetical protein	NA	NA	NA	NA
WP_000113622.1\|3019515_3019824_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.4e-48	96.9
WP_000800012.1\|3019834_3020584_-	ATP-binding protein	S4TNF5	Salmonella_phage	4.3e-139	100.0
WP_000062941.1\|3020586_3021570_-	replication protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_001574095.1\|3021654_3022029_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000370145.1\|3021994_3022234_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001038966.1\|3022353_3022764_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_077905303.1\|3022813_3023074_+	hypothetical protein	NA	NA	NA	NA
WP_000917564.1\|3023066_3023225_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_001668146.1\|3023246_3023546_+	hypothetical protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
WP_000017133.1\|3023672_3026558_+	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	97.3
WP_001539618.1\|3026520_3027678_+	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001237031.1\|3027720_3027960_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000065276.1\|3028000_3028249_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262306.1\|3028293_3029586_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000191404.1\|3029780_3030983_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_000544861.1\|3032742_3033957_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000762343.1\|3034273_3034735_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000117867.1\|3034935_3036336_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	4.5e-81	35.8
WP_000977709.1\|3036942_3038034_+	porin OmpF	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
WP_000462653.1\|3038218_3039409_+	aspartate transaminase	NA	NA	NA	NA
WP_001109471.1\|3039470_3040118_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000357052.1\|3040145_3040694_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_000925891.1\|3040953_3042798_-	L,D-transpeptidase	NA	NA	NA	NA
WP_000572733.1\|3043142_3047609_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_000060027.1\|3047608_3048313_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_001288828.1\|3048293_3049616_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_001154028.1\|3049608_3050412_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA

DBSCAN-SWA_8

3101080 : 3108393

Ralstonia_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001531374.1\|3101080_3101458_+	hypothetical protein	A0A077KET4	Ralstonia_phage	1.7e-19	40.2
WP_001117984.1\|3101619_3101817_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|3102029_3104306_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|3104336_3104657_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|3104980_3105202_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125877.1\|3105331_3107278_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_001201753.1\|3107274_3108393_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8

DBSCAN-SWA_9

4209806 : 4219077

Enterobacteria_phage(85.71%)

integrase

attL 4215374:4215390|attR 4224131:4224147

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049264295.1\|4209806_4212140_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	84.6
WP_000856726.1\|4212154_4212475_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000683330.1\|4212471_4212699_-	hypothetical protein	NA	NA	NA	NA
WP_000980263.1\|4212695_4213247_-	ash family protein	Q7M2A7	Enterobacteria_phage	9.2e-30	66.7
WP_000556592.1\|4213243_4213510_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_000132742.1\|4214050_4214788_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	7.6e-80	63.7
WP_000984213.1\|4214784_4215045_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	6.4e-26	67.9
WP_000147524.1\|4215044_4215608_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.4e-56	61.7
4215374:4215390	attL	NA	NA	NA	NA
WP_001163325.1\|4215876_4217109_+	AAA family ATPase	NA	NA	NA	NA
WP_000481847.1\|4217112_4217787_+	hypothetical protein	NA	NA	NA	NA
WP_000772673.1\|4217823_4219077_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.8e-74	41.0
4224131:4224147	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4464906 : 4508953

Burkholderia_phage(44.44%)

plate,tail,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001182219.1\|4464906_4465905_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_001039337.1\|4465992_4467303_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000416272.1\|4467549_4468065_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001030592.1\|4468164_4468374_-	CsbD family protein	NA	NA	NA	NA
WP_001575282.1\|4468395_4468509_-	hypothetical protein	NA	NA	NA	NA
WP_001128118.1\|4468505_4469831_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646079.1\|4470009_4470618_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002900.1\|4470726_4471095_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017360.1\|4471265_4473686_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455249.1\|4473784_4474657_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000019231.1\|4474670_4475168_-	chorismate lyase	NA	NA	NA	NA
WP_000782497.1\|4475348_4476266_-	maltose operon protein MalM	NA	NA	NA	NA
WP_000973642.1\|4476429_4477788_-	maltoporin	NA	NA	NA	NA
WP_000179176.1\|4477876_4478986_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000695415.1\|4479346_4480537_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000382573.1\|4480668_4482213_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_001252085.1\|4482227_4483118_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000982749.1\|4483283_4483694_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_000750809.1\|4483836_4485933_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_000977968.1\|4485932_4486670_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_123220402.1\|4486666_4487335_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_001541297.1\|4487368_4487611_-	outer membrane protein	NA	NA	NA	NA
WP_000790042.1\|4488054_4489704_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000136394.1\|4490048_4491398_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000615248.1\|4491528_4491876_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226439.1\|4492452_4492740_+\|holin	putative holin	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
WP_001203711.1\|4492742_4493348_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	9.3e-60	59.4
WP_000777266.1\|4493360_4493675_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_000449399.1\|4493834_4494290_+	Gp37 family protein	NA	NA	NA	NA
WP_000875314.1\|4494286_4494484_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000729853.1\|4494473_4495901_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.4e-194	70.9
WP_000907494.1\|4495900_4496425_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003635.1\|4496476_4496794_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185654.1\|4496753_4496882_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001262472.1\|4496978_4499330_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.4e-65	30.3
WP_000679389.1\|4500805_4501528_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_000593182.1\|4501855_4502218_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000703630.1\|4502214_4503144_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	2.3e-150	83.8
WP_001095013.1\|4503143_4504691_+	hypothetical protein	B9UDL6	Salmonella_phage	5.5e-48	29.7
WP_001093501.1\|4504854_4505214_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000951736.1\|4505204_4506320_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
WP_000359500.1\|4506312_4506945_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
WP_001177097.1\|4508437_4508953_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.4e-34	41.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015924

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection