CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP015876	Pseudomonas putida SJTE-1 chromosome, complete genome	3 crisprs	DEDDh,csa3,cas3,DinG,WYL	0	0	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP015876_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015876_1

663765-663859

Orphan

Consensus_repeat	Method
ATACAGATTTCAGCCAGTAATCGGTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015876_1

>merge|NZ_CP015876|1|663765-663859|CRISPRCasFinder
ATACAGATTTCAGCCAGTAATCGGTGCGTGTAGGAGCGGGTTCACCCGCGAAAGGGCCACAGAGGCCCATACAGATTTCAGCCAGTAATCGGTGC

>NZ_CP015876|1|1|663765-663859|CRISPRCasFinder
ATACAGATTTCAGCCAGTAATCGGTGC	GTGTAGGAGCGGGTTCACCCGCGAAAGGGCCACAGAGGCCC
ATACAGATTTCAGCCAGTAATCGGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015876.1\|WP_012051115.1\|661054_661693_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227301
NZ_CP015876.1\|WP_014755225.1\|655475_658307_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_CP015876.1\|WP_003247567.1\|668090_669110_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NZ_CP015876.1\|WP_162493568.1\|665252_666518_-\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|237250
NZ_CP015876.1\|WP_012051124.1\|672685_673705_-\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP015876.1\|WP_010951884.1\|671330_672095_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
NZ_CP015876.1\|WP_014755231.1\|672362_672593_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015876.1\|WP_004577285.1\|660875_661058_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|131575
NZ_CP015876.1\|WP_012051121.1\|667338_668091_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213186
NZ_CP015876.1\|WP_014755226.1\|658807_659245_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_CP015876.1\|WP_003247562.1\|670037_671240_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380668
NZ_CP015876.1\|WP_012051114.1\|660283_660766_-\|GspH/FimT-family-pseudopilin	unknown	unknown	gnl\|CDD\|378793
NZ_CP015876.1\|WP_003247609.1\|658299_658815_+\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|234739
NZ_CP015876.1\|WP_003247577.1\|662155_662545_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227303
NZ_CP015876.1\|WP_004577287.1\|659259_660207_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP015876.1\|WP_012051116.1\|661689_662154_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227070
NZ_CP015876.1\|WP_010951881.1\|666643_667339_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213191
NZ_CP015876.1\|WP_014755228.1\|662599_663697_+\|glycine-oxidase-ThiO	unknown	unknown	gnl\|CDD\|274092
NZ_CP015876.1\|WP_003247565.1\|669111_669972_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324
NZ_CP015876.1\|WP_003247554.1\|673852_674815_+\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020

Protein	Function_ID	Function_description	E-value
NZ_CP015876.1\|WP_012051115.1\|661054_661693_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227301	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion].	4.90483e-13
NZ_CP015876.1\|WP_014755225.1\|655475_658307_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP015876.1\|WP_003247567.1\|668090_669110_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	2.85239e-77
NZ_CP015876.1\|WP_162493568.1\|665252_666518_-\|allantoate-amidohydrolase	gnl\|CDD\|237250	PRK12893, PRK12893, Zn-dependent hydrolase.	0
NZ_CP015876.1\|WP_012051124.1\|672685_673705_-\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	8.69896e-100
NZ_CP015876.1\|WP_010951884.1\|671330_672095_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.14297e-36
NZ_CP015876.1\|WP_004577285.1\|660875_661058_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|131575	TIGR02523, probable_type-4_fimbrial_biogenesis_protein, type IV pilus modification protein PilV. Pilus systems categorized as type IV pilins differ greatly from one another, with some showing greater similarty to type II or type III secretion systems than to each other. Members of this protein family represent the PilV protein of type IV pilus systems as found in Pseudomonas aeruginosa PAO1, Pseudomonas syringae DC3000, Neisseria meningitidis MC58, Xylella fastidiosa 9a5c, etc. [Cell envelope, Surface structures, Protein fate, Protein modification and repair].	5.53787e-07
NZ_CP015876.1\|WP_012051121.1\|667338_668091_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213186	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system. The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).	5.3197e-111
NZ_CP015876.1\|WP_014755226.1\|658807_659245_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	5.18937e-49
NZ_CP015876.1\|WP_003247562.1\|670037_671240_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380668	cd20378, PBP1_SBP-like, periplasmic substrate-binding domain of active transport proteins. Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.	0
NZ_CP015876.1\|WP_012051114.1\|660283_660766_-\|GspH/FimT-family-pseudopilin	gnl\|CDD\|378793	pfam12019, GspH, Type II transport protein GspH. GspH is involved in bacterial type II export systems. Like all pilins, GspH has an N-terminus alpha helix. This helix is followed by nine beta strands forming two beta sheets, one of five antiparallel strands and one of four antiparallel strands. GspH is a minor pseudopilin; it is expressed much less than other pseudopilins in the type II secretion pilus (major pilins). The function and localization of minor pseudo-pilins are still to be fully unraveled. It has been suggested that some minor pseudopilins may assemble either into the base or the tip of pili, or both. They function as initiators or regulators of pilus biogenesis and dynamics, and/or as adaptors between various pseudopilin component and other members of the T2SS.	7.03018e-10
NZ_CP015876.1\|WP_003247609.1\|658299_658815_+\|signal-peptidase-II	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	1.22904e-70
NZ_CP015876.1\|WP_003247577.1\|662155_662545_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227303	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion].	8.22459e-21
NZ_CP015876.1\|WP_004577287.1\|659259_660207_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP015876.1\|WP_012051116.1\|661689_662154_+\|hypothetical-protein	gnl\|CDD\|227070	COG4726, PilX, Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion].	3.71138e-10
NZ_CP015876.1\|WP_010951881.1\|666643_667339_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213191	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter. LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.	3.87353e-111
NZ_CP015876.1\|WP_014755228.1\|662599_663697_+\|glycine-oxidase-ThiO	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	5.32019e-72
NZ_CP015876.1\|WP_003247565.1\|669111_669972_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	4.0484e-67
NZ_CP015876.1\|WP_003247554.1\|673852_674815_+\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	2.37478e-168

>NZ_CP015876.1|WP_014755228.1|662599_663697_+|glycine-oxidase-ThiO
MSKQVVVVGGGVIGLLTAFNLAAKVGQVVVCDQGEVGRESSWAGGGIVSPLYPWRYSAAVTALAHWSQDFYPQLGERLFASTGVDPEVHTTGLYWLDLDDEAEALAWAAREQRPLSAVDISAAYDAVPVLGPGFKHAIYMAGVANVRNPRLVKSLKAALLALPNVTLREHCQITGFVQEKGRVTGVQTADGVLAADEVVLSAGAWSGDLLRTLGLELPVEPVKGQMILFKCAEDFLPSMVLAKGRYAIPRRDGHILVGSTLEHAGYDKTPTGDALESLKASAVELLPELEGATVVAHWAGLRPGSPEGIPYIGPVPGHEGLWLNCGHYRNGLVLAPASCQLFTDLLTGAEPMIDPAPYAPEGRLG
>NZ_CP015876.1|WP_003247577.1|662155_662545_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MQQGLSLIELLIVLAVTGILAAIAYPSYSDQLRRAARSEVVGLLHDAALRLERHRVRTGQYAEGDLVLPEGTRYYSLQAQRDSDTFTLRARRLPHGLMAQDGCGDFQLDQAGMQRNPGAVEHSTHCWGS
>NZ_CP015876.1|WP_012051116.1|661689_662154_+|hypothetical-protein
MNRQRGVVLLLALVLSVLLGLLATSALRDALVETRMTGYLSDGLLALEEAEATLLAGERELERSPPDVCNACLPPPRPHDLVGQWQGTQTGFFQLQNLGVSTRAAHMPEGQPVSLFRITAVSKQSRSRHVLEAVYAVAGNQTQRITWRQRLRGD
>NZ_CP015876.1|WP_012051115.1|661054_661693_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MRRCQAGFGLLEMVVALAIGLMLLAAASQLFVSAHQTWRLQSTAVRMQDSARLALLRMAQDIRMAGMFGCLRLTPDDFLVSGAEQAFTRPLASGPSSLSLVVAELPGYAGDPDWTLLTNCINTVEVHKERAQGSDTLMAVPVSRHRYAHVGSTLYFERRGRNQPLVDHVRELRVVQVAGERIDLQLTLYEPTLQLEQHHTLSVALRNPVPAS
>NZ_CP015876.1|WP_004577285.1|660875_661058_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MHARQGGMTLLEVLLAIVIVAAGLFATAAMQLQALQAADSARRDGLAAMALHSEHERRRR
>NZ_CP015876.1|WP_012051114.1|660283_660766_-|GspH/FimT-family-pseudopilin
MKQRGVTLIQMLSALAVAVLLTQLGMPAYARMSDDLHRAAAARDLAQALRSARSHAMLQSQPVLVLALDGNWGNGWRVVLEHNRQVLREQRLSKPLKITSNRGEQFKFSALGVPMTSGNSWLGATLEMCERAAARSRYQVALASSGRVRLLTEDRSNDRC
>NZ_CP015876.1|WP_004577287.1|659259_660207_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQIKLANPRGFCAGVDRAIEIVNRALEVFGPPIYVRHEVVHNKFVVEDLRNRGAIFVEELDQVPDDVIVIFSAHGVSQAVRQEAAGRGLKVFDATCPLVTKVHIEVAKYSRDGRECILIGHEGHPEVEGTMGQYDASNGGAIYLVEDEEDVANLQVRDPNHLAFVTQTTLSMDDTSRVIDALRARFPNIGGPRKDDICYATQNRQDAVKQLAGESDVVLVVGSPNSSNSNRLRELAERMGTPAYLIDGAEDMQRGWFDQTARIGITAGASAPEVLVRGVIEQLKAWGATGAEELDGREENITFSMPKELRVRSLI
>NZ_CP015876.1|WP_014755226.1|658807_659245_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MTDTRIGQNTEVTLHFALHLENGDTVDSTFDKAPATFKVGDGNLLPGFENALFGFKAGDKRTLVVAPENAFGQPNPQNVQVMPRSNFEGMELSEGLLIIFNDAANTELPGVVKAFDDDQVTIDFNHPLAGKTLTFEVEILEVKAL
>NZ_CP015876.1|WP_003247609.1|658299_658815_+|signal-peptidase-II
MPNPAAGRFGRLAWLWLSLLVLVIDQATKLYFNNALTMYQQIVVIPDYFSWTLAYNTGAAFSFLADGAGWQRWLFALIAVVVSAVLVVWLKRLGRNETWLAVALALVLGGAIGNLYDRIVLGHVVDFILVHWQNRHYFPAFNVADSAITVGAVMLALDMFKSKKSEDPVHD
>NZ_CP015876.1|WP_014755225.1|655475_658307_+|isoleucine--tRNA-ligase
MTDYKATLNLPDTAFPMKAGLPQREPQILQRWDSIGLYQKLREIGKDRPKFVLHDGPPYANGKIHIGHALNKILKDMIVRSKTLAGFDAPYVPGWDCHGLPIEHKVEVTHGKHLSADRTRELCREYAAEQIEGQKTEFIRLGVLGDWDNPYKTMNFANEAGEIRALAEMVKQGFVFKGLKPVNWCFDCGSALAEAEVEYADKKSQTIDVAFPVADEAKLAAAFGLASLTKPAAIVIWTTTPWTIPANQALNIHPEFKYALVDTGERLLVLAEELVESCLKRYNLEGSVVATAQGSALELINFRHPFYDRLSPIYLADYVELGAGTGVVHSSPAYGEDDFVTCKRYGMVNDDILTPVQSNGVYVESLPFFGGQFIWKANPAIVEKLSEVGALMHTETISHSYMHCWRHKTPLIYRATAQWFVGMDKQPSTGEPLRERALKAIEDTKFVPAWGQARLHAMIANRPDWCISRQRNWGVPIPFFLHKQTGELHPRTVELMEEVAKRVEQQGIEAWFKLDAAELLGAEADQYDKIADTLDVWFDSGTTHWHVLRGSHDIGHATGPRADLYLEGSDQHRGWFHSSLLTGCAIDNHAPYRELLTHGFTVDENGRKMSKSLGNTIEPEKVNNTLGADILRLWVSATDYSGEMAVSEQILQRSADAYRRIRNTARFLLSNLSGFDPARDLLAPEDMLALDRWAVDRTLLLQRELEEHYSEYRFWNVYSKVHNFCVQELGGFYLDIIKDRQYTTGANSVARRSCQTALYHISEALVRWIAPILAFTADEIWQYLPGERNESVMLNGWYQGLSELPEGTELDRAYWDRVMAVKASVNKELENQRTAKVIGGNLQAEVTLYADEGLSADLGKLGDELRFVLITSAASVVPFAQAPAEAVATEVEGLKLQVVKSGHTKCGRCWHFRADVGSHPEHPEICGRCVDNLTGSGEVRRYA
>NZ_CP015876.1|WP_162493568.1|665252_666518_-|allantoate-amidohydrolase
MDPSQHLLGQGPLVSRERLWQSLMDLAQLGATAKGGVCRLALTDLDRQARDLFVHWCEEAGCTVSVDAIGNIFARRPGRNPALPPIMTGSHIDTQPTGGKFDGCYGVMAGLEVMRTLNDLHLTTEAPLEVVVWTNEEGSRFPPCMMGSGVFAGKFGLQETLEKIDDQGLSVGAELQRIGYAGPRVPTGHAVGAYFEAHIEQGPVLEDQRTTIGVVQGCLGQKWFDLTLTGVEAHAGPTPMHLRKDALVGAAEVVAAVNRVAHAHQPHACGTVGCLTLHPGSRNVIPGQVHMTIDLRHLDPGHLDAMVSEVRAAIENSTAKHGLSYQLTPTADFPPLYFAEQCVDAVRQGARALGLSHMDIVSGAGHDAIFLAELGPAGMIFVPCEGGISHNEIENAAPQDLADGCDVLLRAMFQAANPGAR
>NZ_CP015876.1|WP_010951881.1|666643_667339_-|ABC-transporter-ATP-binding-protein
MLNVDSIHSYYDKSHVLEGVSLKVEAGELVTLLGRNGAGKTTTLRSILGIVRPRQGQISFNGQQLVGREIFDIARLGIALVPEHRGIFRQLSVEENLKIAVRKTSRWQLEDVYSMFPRLKERRRNGGFALSGGEQQMLAIARALLNGPRLLILDEPTEGLAPVIVDELVKILRRIKDEGLSILLVEQNLMVCDALADRHYVLEQGRVAYQGSAAQFREDPSIKNRYLALSA
>NZ_CP015876.1|WP_012051121.1|667338_668091_-|ABC-transporter-ATP-binding-protein
MSDYLLETRQLELAYGPFKAVAGVDLKVRAGTIHTIIGPNGAGKTSLFHCLTGERQATAGKILFNGQDIIRKPSHGRVALGMARSFQLTSLFQNLSVRENLRLAAQGRDGLGALNFWRSVEHKRSHWNTADQVLERLKLSARAETLAGELSHGQQRVLEVGMSICAKPTLLMLDEPTSGMGIDDIPVMTDLISDLGRDHTVLLIEHNMSIVMSISQRITVMSHGQILVEGTPEQVRNDERVRTAYLGEAA
>NZ_CP015876.1|WP_003247567.1|668090_669110_-|branched-chain-amino-acid-ABC-transporter-permease
MSEKNPLPVAKGRAPALLSLVVASLVALPLLLPSATLATEILIFAMAALACNLLLGYTGLLSFGQGIFFGVGAYGAALLMIHLQWGMFAALLGAAVFGAFLALLVGALAIRRTGIYFVMLTLAFSQMAYFLAYTLSGWTGGDNGLLDVPRPNIEIAGHVLVDLADPRHFYVFVAVLFLLIFAAALRVIRSPFGSTLLAIRENETRAAAIGYDTRHFKILVFMLSGAITGIAGALYAMLLHFAPLSNIDLMMSENILIMTIVGGTGSLFGSLLGAGAIVLLGDVLSELWPRWLMLLGVILILVVVFMRGGLWGGLTELGKRLLATRNADDKPQAKTKETL
>NZ_CP015876.1|WP_003247565.1|669111_669972_-|branched-chain-amino-acid-ABC-transporter-permease
MLDLYLFQLLNGLGLGMIYFLIAVGLTIIFGLLNFVNFAHGAFFLLGAYLCYTAVAVTGNFWLALLIAPLVVAALAWAVERLLIKRIYHLPHTFQILVTLGIALIIQEASVLIWGPVGKNIAVPPELRGVLILGDFIYPYYRLFLIGFAALIGIGLWLLLERTRFGALVRAGSESTETVSLLGTNIFRLFSLTFALGVGLAGVAGVLFAPLRGAQPFVGPEILGIAFVVVVIGGMGSFGGALVGGLLVGVVQSMMTSLWPQGASLMIYGAMAAVILVRPYGLFGRA
>NZ_CP015876.1|WP_003247562.1|670037_671240_-|ABC-transporter-substrate-binding-protein
MQRRTLLKAGLALGALGSLPLGAHRAFADQPLTFYGLKSMSGAFASYGKYADMGSRLAIAEHPQLLGHPLKYKVIDTEGNAGKAVRKVQEAIGQDGARFFQGCTLSSSALAVSKEIHKAGGVFMTPVGADEITGKDCNASTFRWSVPTYGAIRETLVPMSRQLPQAKRWYTITPQYVFGDALLDNARKVFAELGVEHIGNSYHSLQEQEFSGYLTNAIAAKPDVLVLLNFGSQASNALRQAVNFGIKDRMKVLMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNKQLVAATRKAYGINPNYPLAADYIGTKVMLEAIVKAGSLDGAAVSAALQGMRFQGPTGEELIRPGDHQVLKDYYLLRGKPQGQMRDEDDLAEVISSGRSFVEVDHTGCALA
>NZ_CP015876.1|WP_010951884.1|671330_672095_-|FadR-family-transcriptional-regulator
MLKPKRKRQKLSDVIVESVKRSIVTEALHPGDRLPTERELMEHFECSKGTAREALKALEVEGLVSTRTGPTGGAYLNEVGTEPASRALRNYLHFQHLDGEQVYQLRKVIEVELAVSVMGKLSEADYAALQANIDFCSAPEDSEEGQREQRLAELEFHTLLADRCPNPLLRFMAVFLNDLLRDLVVLKKAYLPKRQQFAAANIGYHKQLLTALRASDEPAVRRLMHEHMCDAEHHMTALEGEVARNFLLEFDHHH
>NZ_CP015876.1|WP_014755231.1|672362_672593_-|hypothetical-protein
MVRLLFWIALIAAAFWLWRKFKVSQQSHPEAKLDAPLKMVRCAHCGVHLPNDRALQQGNEWYCSQAHLQQGPGHQG
>NZ_CP015876.1|WP_012051124.1|672685_673705_-|outer-membrane-protein-assembly-factor-BamD
MRVKHLLLIAILGLTAACSSNKEVIDENLSEAELYQQAQADLDNSSYTSAVNKLKALESRYPFGRYADQAQLELIYANYKNAEPEAAKSAAERFIRLHPQHPNVDYAYYLKGLTSFDQDRGLLARFLPLDMTKRDPGAARDSYNEFAQLTSRFPNSRYAPDAKQRMIYLRNLLASYEIHVADYYLSRQAYVAAANRGRYVVENFQETPSVGDGLAVMVESYQKLHLDELAATSLETLKLNYPDHPSLVDGEFQPKQTESDGRGWLSKATLGLIETDTPLPPGETRANQDVVKQFQDARDEMPRELLPKDENGDPIVPEGPKEAEKDRSWFSYMTFGLFD
>NZ_CP015876.1|WP_003247554.1|673852_674815_+|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSEIIQLSAEVPSELGGQRLDQVAAQLFAEYSRSRLTSWIKEGRLTVDGAVVRPRDLVHGGSLLALEAEQEAQGEWIAEDIELDIVYEDDHILVINKPAGLVVHPAAGHASGTLLNALLHHVPDIVNVPRAGIVHRLDKDTTGLMVVAKTLQAQTKLVEQMQARKVSRIYECIVIGVVTAGGKIDAPIGRHGGMRQRMAVTDGGKPAVSHYRVLKRFRSHTHVRVKLETGRTHQIRVHMAHVGFPLVGDQTYGGRFRIPPAASPTMVEAVKTFPRQALHARFLALAHPITGEVMKWESPLPDDFVWLLSLLNQDRESFIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP015876_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015876_2

1375809-1375925

Orphan

Consensus_repeat	Method
GGCAAGTGTGTTGGGTGTGTTGGGTTTGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP015876_2

>merge|NZ_CP015876|2|1375809-1375925|CRISPRCasFinder
GGCAAGTGTGTTGGGTGTGTTGGGTTTGTGTTGGGTTGGTTTCGGTAAGCCAACACAGGTTAGAGCCCCGAGTTTCGTGGCGTGGAGGGCATGTGTGTTGGGTGTGTTGGGTTTGTG

>NZ_CP015876|2|2|1375809-1375925|CRISPRCasFinder
GGCAAGTGTGTTGGGTGTGTTGGGTTTGTG	TTGGGTTGGTTTCGGTAAGCCAACACAGGTTAGAGCCCCGAGTTTCGTGGCGTGGAG
GGCATGTGTGTTGGGTGTGTTGGGTTTGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015876.1\|WP_014755609.1\|1369345_1369600_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|99707
NZ_CP015876.1\|WP_014755621.1\|1377371_1377893_+\|terminase-small-subunit	unknown	unknown	gnl\|CDD\|369382
NZ_CP015876.1\|WP_049806377.1\|1371187_1371847_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|224885
NZ_CP015876.1\|WP_014755627.1\|1383259_1384288_+\|major-capsid-protein	unknown	unknown	gnl\|CDD\|377147
NZ_CP015876.1\|WP_110389087.1\|1370421_1370898_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015876.1\|WP_014755611.1\|1370185_1370425_-\|pyocin-activator-PrtN-family-protein	unknown	unknown	gnl\|CDD\|371380
NZ_CP015876.1\|WP_014755610.1\|1369596_1370094_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015876.1\|WP_080580359.1\|1376125_1376677_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015876.1\|WP_014755628.1\|1384289_1384466_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015876.1\|WP_014755624.1\|1380053_1381661_+\|phage-portal-protein	unknown	unknown	gnl\|CDD\|377468
NZ_CP015876.1\|WP_014755616.1\|1372360_1372849_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015876.1\|WP_014755617.1\|1373041_1375801_+\|bifunctional-DNA-primase/polymerase	unknown	unknown	gnl\|CDD\|378140
NZ_CP015876.1\|WP_041167293.1\|1382897_1383248_+\|head-decoration-protein	unknown	unknown	gnl\|CDD\|376964
NZ_CP015876.1\|WP_158515024.1\|1368998_1369349_-\|restriction-alleviation-protein,-Lar-family	unknown	unknown	gnl\|CDD\|379576
NZ_CP015876.1\|WP_014755623.1\|1379835_1380051_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015876.1\|WP_014755615.1\|1371944_1372142_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379402
NZ_CP015876.1\|WP_041167291.1\|1376881_1377229_+\|holin	unknown	unknown	gnl\|CDD\|318333
NZ_CP015876.1\|WP_041167290.1\|1372841_1373045_+\|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|222775
NZ_CP015876.1\|WP_193399786.1\|1377936_1379823_+\|phage-terminase-large-subunit-family-protein	unknown	unknown	gnl\|CDD\|368649
NZ_CP015876.1\|WP_014755625.1\|1381663_1382884_+\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|132933

Protein	Function_ID	Function_description	E-value
NZ_CP015876.1\|WP_014755609.1\|1369345_1369600_-\|AAA-family-ATPase	gnl\|CDD\|99707	cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.	6.24665e-08
NZ_CP015876.1\|WP_014755621.1\|1377371_1377893_+\|terminase-small-subunit	gnl\|CDD\|369382	pfam07471, Phage_Nu1, Phage DNA packaging protein Nu1. Terminase, the DNA packaging enzyme of bacteriophage lambda, is a heteromultimer composed of subunits Nu1 and A. The smaller Nu1 terminase subunit has a low-affinity ATPase stimulated by non-specific DNA.	1.07423e-10
NZ_CP015876.1\|WP_049806377.1\|1371187_1371847_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	5.41793e-34
NZ_CP015876.1\|WP_014755627.1\|1383259_1384288_+\|major-capsid-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	1.8988e-78
NZ_CP015876.1\|WP_014755611.1\|1370185_1370425_-\|pyocin-activator-PrtN-family-protein	gnl\|CDD\|371380	pfam11112, PyocinActivator, Pyocin activator protein PrtN. PrtN is a transcriptional activator for pyocin synthesis genes. It activates the expression of various pyocin genes by interaction with the DNA sequences conserved in the 5' noncoding regions of the pyocin genes.	2.89537e-20
NZ_CP015876.1\|WP_158515024.1\|1368998_1369349_-\|restriction-alleviation-protein,-Lar-family	gnl\|CDD\|379576	pfam14354, Lar_restr_allev, Restriction alleviation protein Lar. This family includes the restriction alleviation protein Lar encoded by the Rac prophage of Escherichia coli. This protein modulates the activity of the Escherichia coli restriction and modification system.	2.3439e-09
NZ_CP015876.1\|WP_041167291.1\|1376881_1377229_+\|holin	gnl\|CDD\|318333	pfam16085, Phage_holin_3_5, Bacteriophage holin Hol, superfamily III. Phage_holin_6_2 is a family of holins classified as 1.E.20 in the TC database. The hol gene (PRF9) product (117 aas) of Pseudomonas aeruginosa PAO1 exhibits a hydrophobicity profile similar to holins of P2 and phiCTX phages with two peaks of hydrophobicity that might correspond to either one or two TMSs. Hol functions in conjunction with the lytic enzyme, Lys, a glycosyl hydrolase that breaks-up the murein in the bacterial cell-wall, causing lysis of the cell and hence entry of phage particles. Several members are annotated as pyocin R2_PP when encoded on the chromosome.	2.231e-42
NZ_CP015876.1\|WP_014755624.1\|1380053_1381661_+\|phage-portal-protein	gnl\|CDD\|377468	pfam05136, Phage_portal_2, Phage portal protein, lambda family. This protein forms a hole, or portal, that enables DNA passage during packaging and ejection. It also forms the junction between the phage capsid and the tail proteins.	7.05614e-107
NZ_CP015876.1\|WP_041167293.1\|1382897_1383248_+\|head-decoration-protein	gnl\|CDD\|376964	pfam02924, HDPD, Bacteriophage lambda head decoration protein D.	4.92091e-15
NZ_CP015876.1\|WP_014755617.1\|1373041_1375801_+\|bifunctional-DNA-primase/polymerase	gnl\|CDD\|378140	pfam09250, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.	2.88326e-16
NZ_CP015876.1\|WP_014755615.1\|1371944_1372142_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379402	pfam13936, HTH_38, Helix-turn-helix domain. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	0.00397726
NZ_CP015876.1\|WP_041167290.1\|1372841_1373045_+\|TraR/DksA-C4-type-zinc-finger-protein	gnl\|CDD\|222775	PHA00080, PHA00080, DksA-like zinc finger domain containing protein.	4.88493e-16
NZ_CP015876.1\|WP_193399786.1\|1377936_1379823_+\|phage-terminase-large-subunit-family-protein	gnl\|CDD\|368649	pfam05876, Terminase_GpA, Phage terminase large subunit (GpA). This family consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities.	0
NZ_CP015876.1\|WP_014755625.1\|1381663_1382884_+\|S49-family-peptidase	gnl\|CDD\|132933	cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.	6.92621e-65

>NZ_CP015876.1|WP_014755617.1|1373041_1375801_+|bifunctional-DNA-primase/polymerase
MSERPTPTTADWARRYIETFNLALVPIEPGEKGPKGNGWNKPGGYFTAAADAESFWKKRPSHNLGVVLGPSGVCSLDVDEVQCTRQILSELLGMDLDALADAYPTSVGNPARFRIMFRVPDGVDLSWHPLNWPSQADPDGSIHKALMAQVKAARDAGDTDREAALKVAAEPFKKIPVFELRAGLVQDVLPPSIHPGTGLPYTWRTPPSAEGLPELPPQLLAIWQGWDEFKPKAEAVCPWLPKALPAPRPAPARPRPVAGRSGRDLPEVIPLFNQAHDIAALIEAHGYERRGDKWLCPQSSSGLAGVSIIDDKLFSHHSSDPLANGHKNDAFDVFRILVHGGDQRAATKAAAQILGIDAKSGTSAPPPLGELPRTPSVTEQAEQGEVSADPDEPADVEGIPGEPSPAAYSPDGGQGGEGLVLKSAKRRFALVEGTTNVWDMDKGQSMKRSGFEALVGKPLAKQWIESADKKLVSSEQVKELEQARKMSSKKGGALNLAPLDRYVYIDGTKEAWDREKKRRLPEGSVKMALGDAYQLWLNSPNRRVVDVDHIVFDPTMTKDPAIYINTFEGLPHAPVRDDAACENLRWLISFLCNHDAVALDWLVKWLAYPLQHMGAKMDTAVLFHSTMEGSGKSLLFADIMGELYGRYGATVGQTQLEGNFNAWQSGKLWAVFEEVVSRDQRYNQVGKIKHMITGKTVRMESKFINGWEEANHMNSVFLSNEIMPWPISESDRRMLVMWPLETLPPERQKAIARELANGGVAALYGWLLDVELGEFNQRTRPPETEARQRLVELSRTAWQTFFYLWRAGELGHGLWGCCLTSDVYAMFLEWCSHNKENSMSHTKFSLMFSAKVEKTRAIPWSDGSNRRFAAFFFPSDGDPSLPPSAVAAELGKNVVEWRARAKLAGWNVDGWDHIKRLAA
>NZ_CP015876.1|WP_041167290.1|1372841_1373045_+|TraR/DksA-C4-type-zinc-finger-protein
MADVIDVANDQADYHLQVALQRRLRPVTKPSAQFCEDCGEPIPVKRQQLVAGCETCTSCQELRERRR
>NZ_CP015876.1|WP_014755616.1|1372360_1372849_+|hypothetical-protein
MSRIDLLPGAGPVLTLRQALYRAGRDYHGGMTRLAFDMGLDVDTLQKKLNHNEERRWPTPDELEEIVQLTASPRLLDALVRPAGAVWYRPEPVPATNEALQAVAKLLEESSEFVGSLHDGAADNVWTPVEVVDLEQRGMDVIRQVLAIMAGARQSMEESTHG
>NZ_CP015876.1|WP_014755615.1|1371944_1372142_+|helix-turn-helix-domain-containing-protein
MSIQEMLGALIERGFSQRAIAERVGVTQPTIYRATKGAAVRYEVGKAIEAFYEEQVVGSKCKKEH
>NZ_CP015876.1|WP_049806377.1|1371187_1371847_-|helix-turn-helix-domain-containing-protein
MIGNRVAKRMHELGLSGGELARRSGVPQPTIHRILSGTSASPRHENVERIAKALGVTTDWLWKGEGGSQPPLGPTANVEPGPKVRGFVPLISWVQAGAWCEMQEPFELEAAEAWLPCAVSHSSSTFALRVRGLSMFNPHERRSFREGDIIFVDPARDYENGSLVIVKLANSKEATFKQLVVEGERYFLKPLNPSWPDPIIELPSDATICGVVVSKVEIF
>NZ_CP015876.1|WP_110389087.1|1370421_1370898_-|hypothetical-protein
MLLEGTLENGGNTTCPLNRPETSLDAHIQVENDDRDHHLQVRFGPYTGSITLRRGDSTKYMALRNFLQDVANGRTVSGQQTQRAIALMEALDCVSDVLPEGLRAYITPTTDEDQPFGTVVTNDQGDICATAYGSCKLTLANAVRTKLGQLPEGYGDRQ
>NZ_CP015876.1|WP_014755611.1|1370185_1370425_-|pyocin-activator-PrtN-family-protein
MKGTFGQLFKQWGTPCPTLTAVREHYFPHIKTDRRFRELINAGKIGLNPKKLHNSVRAQYVIYLHDLADYLDTQAPKTS
>NZ_CP015876.1|WP_014755610.1|1369596_1370094_-|hypothetical-protein
MQPHQLVLAIGILWLTTLTILPFLFAKARHRAFNRGLDAGKQSLKADLKLRIKGLQDDLDEAKVQTEADQRKHHTAIAHLKGSIHELEARIMSYTGLAVTRADYELLISAIETLSLTERTLNAMKATQQASRAKQQAAGLDGLAKRIHTQLRETPASAACAEVAA
>NZ_CP015876.1|WP_014755609.1|1369345_1369600_-|AAA-family-ATPase
MTNQSPRSCLVHGPSGCGKTTYAQAIAKALGLRDVLDNWAPGKPAPLLNTLLLSCECDPNWHFKGRAMTFDQAMQIARQQGTVV
>NZ_CP015876.1|WP_158515024.1|1368998_1369349_-|restriction-alleviation-protein,-Lar-family
MSNDQILAPCPFCGSPANRFTIEDDRDPNHGGDVIACSRCDACTRVVFGEKAGLADLWNSRAASLVAWLGQAGLYRTRFDAVRNFEQSVTPVSPDELFELASKQVLSQLNEGRQHA
>NZ_CP015876.1|WP_080580359.1|1376125_1376677_+|hypothetical-protein
MKNDQGLRLQQQVDLALHRIDMAALIDQAERLRLVGELMKHWGEQRSQLGLEASLGSQMGTIMEWKGSAPRGGTSGSRILVSGAGLDHAAAEVDAAVAQLERRDARGATLAKLAHHRYLFGTTVRIQMREVGLAEDADRTYRNWVKALHLQVFAILAARAGRVRQQTVRRVTMRRACAEVAPK
>NZ_CP015876.1|WP_041167291.1|1376881_1377229_+|holin
MNSEQQTLAELPIWMVIVLSLVGGVSGEMWRADMAGARGWGLIRRLALRSGACVTCGLSTNMLLYALGVSVWAAAAVGCLAAMAGADVAINLYMRWAAKRLGLGQEPPAGSEAGQ
>NZ_CP015876.1|WP_014755621.1|1377371_1377893_+|terminase-small-subunit
MGKTVSKLELGEIIGRDERTLSRWQKDGMPVIEFGVGRGNENQYDTQVVIEWLLRQAALNGKKESTRDRLDRLRGDREEIALARELGEVVIEAEMVERFEAVITAAKIELLNTFPDELAATLSAKYGVQVDDQLIREPIESILRRLSAYDEDDDLAGDSDESDDEEGSEEDGE
>NZ_CP015876.1|WP_193399786.1|1377936_1379823_+|phage-terminase-large-subunit-family-protein
MTIAEWADRFRWLAPEESAAPGKYRFDMTPHLIWPGGPLEALDDPNVFEIVGRKSAQVAWTSGVLGNAIGKWIDLDPSPILILFPKAEAAKQYVAEKLEPMIEATKRLRKKVDLRSRKLQQRQDFKRFPGGFLKMVGSNSPASVKSTPVPRVAIEEPDDCNLNLRGQGDSIKLAKERLKTFRRSKIIIGGTPTIKGLSAIDAELELSDKRVGLVPCHGCGQSHALSFDHLHCDEDEHYFHEVYGKRRPETAYYACPHCGEIWDDHQKNANLAHGRWEATAEFRGIAGYILNELYAKFHGSRFEVLIEKKLQAEYATRQGNIGPMIAFTNSSMGESYEYKSDAPKTDELEKRAEPYTELTAPKGTLLVTVGVDVQGDRLALVMVGWGRGEESWRLYWGELPGNPIDPHDPVWTELDKIIATPILTESGAQLAVSAVSIDSSDGNTSDAVYTYVRDRQRFNIMAIKGASIDSRDREIFTKPAQSADTSQDNTKASKYGLRVFIVGTHKAKTLIDGRMKLKGGGPGRMHWYSEIRSDYYEQVTNEVLAPHPRNPSKMVWQKKAGRRNEALDCEVYALHAARSLKTHLLRDHEWDQLEQQLLQPTLFTTEQAVAPVPRRAVARGRGTRSRVS
>NZ_CP015876.1|WP_014755623.1|1379835_1380051_+|hypothetical-protein
MTDAQQRLDEVRAAISRVLKNGQRLRRQDREIQLAELNSLRLLEKQYAGEVAAETAARQGRGRNRVSYVGI
>NZ_CP015876.1|WP_014755624.1|1380053_1381661_+|phage-portal-protein
MWPFRKRDSAAEQLMNEAIRVARASVDGQQIVAQGGGGGVETRWRGASRMLRSVASWIPGLGSPRRDFNHSERRMLVARSRDAMRNHLIARAAITRLRTNVVGTGLVCRAQVDHDALGLTEEEAEQLNGQLDRLWSLYADDPRECDAEASLNHYQLQALVLVSSMVAGDVFVASPDQERPGCIFSTRLQLIESDRVGNPNGGMDRADLVEGVEFDGLGAPVAYHVCTGYPGEHLLGKSLQWERLAVFGAETGRRRVLHVMADKERPGQKRGAPYLSPVLEPLQKLERYSSAELMAAVISAMFTVFIKKGDGFNANNLPMSALTEEQPGGDDTSDGAIALGEGAIVDLGVGEEPMIANPSRPNAQFDPFFTAVVKEIGAALELPLEELLLHYSSSYSAARAAMLQAWRFYSLRRWWLACDFCQPSRELVIDEAVARGLVDLPGYNDPAKRKAYCQAIWIGPARGAIDELKEANAAGKRIEIGVSNETLETAAMTGEPWQQVIRQRTREVSYRREHNIQALPKSGLESPPEPQPKEE
>NZ_CP015876.1|WP_014755625.1|1381663_1382884_+|S49-family-peptidase
MPRALELAASQPWLMMPDALDNLLTISDRMGDPVALATKRGERLEETRRVTMRGSVAVVPVVGPIFRYANLFTEISGATSTQVLATDIQRALDDPKVKSIVLNIDSPGGVASGINELAEMIYAGRSRKKIVAYIGGIGASAAYWIASAAGEIVIDEASLAGSIGVVVEAVIEDEKKAGRARYQIVSRNAPNKRPDLGTEEGRAKMGETIDAMAEVFEGKVARNLGVDAAKVPEMGDHGGIRVGADAVKHGLAHRVGSLESVITELAKPAINSTRIHNMTTVKTTAELRTAIAAGTDPNTIEIAAADQPDTAAIRTEAATAERDRIKGINALAVKGFEKEIEAAIDDGSSVEATALVLFKASQDRGISLAGIKGDAQGVTGSTPPAGGKDGERKAAVSAIVSGASRR
>NZ_CP015876.1|WP_041167293.1|1382897_1383248_+|head-decoration-protein
MPNPQTHTFTPSQLEAGDFPIVMDSGVIAAGQQLRRGAVLGQVTASGEYLLCKAAAEDGSQAPKAILDRDVDTSDGAQSAPLRLTGQVLSSQLTLGEGLTLAAAKAALRSLCIFVR
>NZ_CP015876.1|WP_014755627.1|1383259_1384288_+|major-capsid-protein
MDIFDTLTMLEAVEQLATPRRFLMNTFFNAGAPETFPTETVTIDIVKGQRKMAPFVHPTLPGSVSQRTGFASSTYKPPYIQPKRVTRAEQILKRGAGETPFSTRTPLERAGERLGRDLVELEDEIIRREEWMCAQALTTGRIRVQGDGVDDTIDFLMEDTHKVTLATGRWNTSGSDPIANLRQWRRLIAKDSGRSANVAVLSAEAQDAFQSNEAVLKQLNTRRVDMGLIKPEELPDGVTYLGYLNDPGVDLYAYDEWYLDDEAGEKPLIPAGSLILGSTATRNIMMYAAIQDLDAIESGLVEAARFPKSWVTQEPSQRWLKLQAAPLAGLLEPNAFLSAKVV
>NZ_CP015876.1|WP_014755628.1|1384289_1384466_+|hypothetical-protein
MAAKIEYVVVDGCIQDGSKVVRKGEVYVPPSAELRDVLLEEGIIARRGKLDSENESGD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP015876_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP015876_3

3831321-3831469

Orphan

Consensus_repeat	Method
CCGCACTTGCCTTCACCACACTTGCCCTCGCCCCCAACCTTGGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP015876_3

>merge|NZ_CP015876|3|3831321-3831469|PILER-CR
CCGCACTTGCCTTCACCACACTTGCCCTCAGCCCCAGCCTTGGCGCCGGCGCCGCACTTACCCTCACCGCACTTGCCTTCGCTCTGGGAAGCCTTGCCGCTCCCCCCGCACTTGCCTTCACCACACTTGCCCTCGCCGGCCACTTTGGC

>NZ_CP015876|3|1|3831321-3831469|PILER-CR
CCGCACTTGCCTTCACCACACTTGCCCTCAGCCCCAGCCTTGGC	GCCGGCG
CCGCACTTACCCTCACCGCACTTGCCTTCGCTCTGGGAAGCCTT	GCCGCTCCCCCCGCACTTGCCTT
CACCACACTTGCCCTCGCCGGCCACTTTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP015876.1\|WP_010953344.1\|3848116_3848743_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_CP015876.1\|WP_012052932.1\|3828344_3828962_+\|ferric-reductase-like-transmembrane-domain-containing-protein	unknown	unknown	unknown
NZ_CP015876.1\|WP_029611759.1\|3845367_3846264_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176165
NZ_CP015876.1\|WP_003250463.1\|3826156_3826897_+\|response-regulator	unknown	unknown	gnl\|CDD\|181883
NZ_CP015876.1\|WP_014753788.1\|3832540_3837034_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|339245
NZ_CP015876.1\|WP_014753795.1\|3848782_3849865_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP015876.1\|WP_014753796.1\|3850003_3850699_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP015876.1\|WP_014753791.1\|3841632_3843993_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP015876.1\|WP_014753783.1\|3825134_3825650_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239310
NZ_CP015876.1\|WP_012052940.1\|3844059_3845250_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP015876.1\|WP_014753786.1\|3830186_3831020_-\|DUF692-domain-containing-protein	unknown	unknown	gnl\|CDD\|235447
NZ_CP015876.1\|WP_012052933.1\|3828976_3829465_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP015876.1\|WP_014753781.1\|3823721_3824171_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|237270
NZ_CP015876.1\|WP_014753782.1\|3824167_3825016_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|183586
NZ_CP015876.1\|WP_014753794.1\|3847325_3848114_+\|YqcI/YcgG-family-protein	unknown	unknown	gnl\|CDD\|370174
NZ_CP015876.1\|WP_014753785.1\|3829498_3830194_-\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NZ_CP015876.1\|WP_003250449.1\|3831760_3832312_-\|DUF4174-domain-containing-protein	unknown	unknown	gnl\|CDD\|379363
NZ_CP015876.1\|WP_004573749.1\|3825660_3825936_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP015876.1\|WP_003250438.1\|3846244_3847165_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP015876.1\|WP_014753784.1\|3826893_3828180_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_CP015876.1\|WP_010953344.1\|3848116_3848743_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	6.84954e-21
NZ_CP015876.1\|WP_012052940.1\|3844059_3845250_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	4.73444e-60
NZ_CP015876.1\|WP_029611759.1\|3845367_3846264_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176165	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 7. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.5497e-108
NZ_CP015876.1\|WP_003250463.1\|3826156_3826897_+\|response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	5.57495e-76
NZ_CP015876.1\|WP_014753788.1\|3832540_3837034_-\|hypothetical-protein	gnl\|CDD\|339245	pfam14496, NEL, C-terminal novel E3 ligase, LRR-interacting. This NEL or novel E3 ligase domain is found at the C-terminus of bacterial virulence factors. Its sequence is different from those of the eukaryotic HECT and RING-finger E3 ligases, and it subverts the host ubiquitination process. At the N-terminus of the family-members there is a series of LRR repeats, and the NEL domain interacts with the most N-terminal repeat. The key residue for the ligation step is the cysteine, eg found at position 386 in UniProtKB:E7K2H2. The LRR section sequesters this active site until invasion has occurred.	1.59659e-65
NZ_CP015876.1\|WP_014753796.1\|3850003_3850699_+\|hypothetical-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	0.00261631
NZ_CP015876.1\|WP_014753791.1\|3841632_3843993_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP015876.1\|WP_014753783.1\|3825134_3825650_-\|thioredoxin-family-protein	gnl\|CDD\|239310	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.	2.87056e-74
NZ_CP015876.1\|WP_014753786.1\|3830186_3831020_-\|DUF692-domain-containing-protein	gnl\|CDD\|235447	PRK05409, PRK05409, hypothetical protein; Provisional.	1.00161e-147
NZ_CP015876.1\|WP_012052933.1\|3828976_3829465_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.66097e-19
NZ_CP015876.1\|WP_014753781.1\|3823721_3824171_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|237270	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed.	1.81183e-96
NZ_CP015876.1\|WP_014753782.1\|3824167_3825016_+\|shikimate-dehydrogenase	gnl\|CDD\|183586	PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed.	4.72622e-179
NZ_CP015876.1\|WP_014753794.1\|3847325_3848114_+\|YqcI/YcgG-family-protein	gnl\|CDD\|370174	pfam08892, YqcI_YcgG, YqcI/YcgG family. This family of proteins are functionally uncharacterized. The family include YqcI and YcgG from B. subtilis. The alignment contains a conserved FPC motif at the N-terminus and CPF at the C-terminus.	3.5107e-75
NZ_CP015876.1\|WP_014753785.1\|3829498_3830194_-\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	9.36794e-60
NZ_CP015876.1\|WP_003250449.1\|3831760_3832312_-\|DUF4174-domain-containing-protein	gnl\|CDD\|379363	pfam13778, DUF4174, Domain of unknown function (DUF4174). This domain of unknown function is found in a putative tumor suppressor gene and in a ligand for the the urokinase-type plasminogen activator receptor, which plays a role in cellular migration and adhesion.	1.20614e-20
NZ_CP015876.1\|WP_004573749.1\|3825660_3825936_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.90778e-24
NZ_CP015876.1\|WP_003250438.1\|3846244_3847165_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.23264e-65
NZ_CP015876.1\|WP_014753784.1\|3826893_3828180_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.20925e-43

>NZ_CP015876.1|WP_014753786.1|3830186_3831020_-|DUF692-domain-containing-protein
MFPAMLNIGLGLRRGLLPELLAMEAGAVDFLECAPENWIAVGGAYGKGLAQLAERFAVTCHGLSLSLGGSAPLDRHFLEQTRQFLDRYQVRLYSEHLSYCSDDGHLYDLMPIPFTDEAVHHVAARIRQAQEQLERRIAVENISYYAAPYQAMSELDFIQAVLEEADCDLLLDVNNVYVNACNHGYDAQQFLAGLPPARVTGMHVAGHYDEAPDLKVDTHGAAVKEDVWTLYASACVRFGVKPTVLERDFNYPPLAELLAETARMRAVQSAAGGQADE
>NZ_CP015876.1|WP_014753785.1|3829498_3830194_-|putative-DNA-binding-domain-containing-protein
MNETLRAQQYALARHLRDPQRHAPPPGVEARRLKVYRELFYGAIEGLLAGSFPVMRQALGEQRWHARVRDFYASYRCQTPLFTEIAETFVDYLQHVTLDTPWQLELAHYEWVEAQLYLSDAEDPAHDPGGDLLAGEPLLSCVARVLAYRWPVERIGGDYQPTAAPASPTLLLVYRDARLQVRFARLAPMAYRLLVEQGTGRERLQALGGDVQQGLALLEALREQGVIVGTV
>NZ_CP015876.1|WP_012052933.1|3828976_3829465_+|DoxX-family-protein
MTTLTRTLTTVDRLGSWSADVPLRVFLAWEFFESGLEKFNGSNWFADLQSSFPFPFNLLPAELNWQLSMWAELVLPLLLLLGLGTRLASLGLMVVTVVAIAAVHWPAHWSGLAELAQGYAITDQGFGNYKLPLIYLVALLPLLLKGAGRLSLDHWLGMRFGR
>NZ_CP015876.1|WP_012052932.1|3828344_3828962_+|ferric-reductase-like-transmembrane-domain-containing-protein
MKALTLPSGWKLFAALAGLTLAMTAIVLASQPDPDGLRSAIRATARSSFALFLLAFLASSLVTLLPGTSSRRILQERRYLGLAFAFSHTVHGVLIYRYAQQFPELFWAGRTLTSSLPGTVGYLFVLLLTATSFKPPMRLLGGRAWQALHSSGMWVLAAVFCLSFYKRIPMGGWYPLAFALMFSAIAVKLTAKVARKQRRTTRALA
>NZ_CP015876.1|WP_014753784.1|3826893_3828180_+|HAMP-domain-containing-histidine-kinase
MKWPRTLASRLAMIFFTGLVLAYGLSFGLQAYERYISSRSMMLSNLEQDVATSVAILDRLPAAERAAWLPRLERRTYRYRLDQGLAGEAMPSSDPPMAAASIVKAIGSDYRLTFLEIPGPNAHFQAHLNLADGAPLTIDVTPAPVPVARWLPVVLLIQLAVLLLCTWLAVRLAIGPLTRLAQAVDNLDPDQPGVQLDESGPREVRYAAVAFNALQARIAAHLKERMQLLAAISHDLQTPITRMKLRVEVMDEGVEKDKFGSDLDEMEHLVREGVAYARSMDSSTEATCRVNLDAFLDSLVFDYQDSGAQVERHGSSGTLLETRPHALRRVLVNLVDNALKFAGAAELQVSREGSTTIIRVLDNGPGIPGDELDEVLKPFYRVEGSRNRSTGGTGLGLAIAHQLIQAMGGRLTLSNREQGGLCAQIELT
>NZ_CP015876.1|WP_003250463.1|3826156_3826897_+|response-regulator
MEHVDHILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLLLCRELRAGKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRRTRMLPPNLTISESSRLLGFGQWRLDTTARHLLDSEGTLVALSGAEYRLLRVFLDHPQRVLSREQLLNLTQGREADIFDRSIDLLVSRLRQRLGDDAREPSCIKTVRSEGYVFSLPVQLLESPS
>NZ_CP015876.1|WP_004573749.1|3825660_3825936_-|DUF2790-domain-containing-protein
MNVKTIASASLFAVLSFGAIAAQAATAPMQDGGVMQYRYGEPLDVKKVLSVQDDQSNACGLVNTRMDYLDSHGQRQSVQYRTYATGGCHDN
>NZ_CP015876.1|WP_014753783.1|3825134_3825650_-|thioredoxin-family-protein
MLKAGGFALALMGLGLAGHLKARDSYGAMPSLSGASQWLNSPPVDAPGLKGKVVLVDFWTWDCINCRRSLPHVNEWARRYADQGLVVVGVHTPEYDYEHDVSTLRDKVARLGIGYPVAVDNDYKVWNAWGNQFWPAHYFVDRKGQVRHVHVGEGDYGGQEQVIQALLDEQG
>NZ_CP015876.1|WP_014753782.1|3824167_3825016_+|shikimate-dehydrogenase
MSQQAILAGLIGRGIQLSRTPALHEHEGDAQALRYLYRLIDADQLQLDDSALPGLLEAAQHTGFTGLNITYPFKQAILPLLDELSDEARGIGAVNTVVLKDGKRVGHNTDCLGFAEGLRRGLPDVARRQVVQMGAGGAGSAVAHALLGEGVERLVLFEVDATRAQALVDNLNAHFGAERAVLGTDLATALAEADGLVNTTPVGMAKLPGTPLPVALLHPRLWVAEIIYFPLETELLRAARALGCRTLDGSNMAVFQAVKAFELFSGRQADAARMQAHFASFT
>NZ_CP015876.1|WP_014753781.1|3823721_3824171_+|type-II-3-dehydroquinate-dehydratase
MKPLILVLNGPNLNMLGTREPAQYGHETLADLAQGCADTAHAHGLEIEFRQTNHEGELIDWIHAARGRCAGIVINPGAWTHTSVAIRDALVASELPVIEVHLSNVHKREPFRHLSFVSSIAVGVICGLGSHGYRMALSHFAELLQERVA
>NZ_CP015876.1|WP_003250449.1|3831760_3832312_-|DUF4174-domain-containing-protein
MLVRSLTLATLLAVAGPLFAADSDAPLAKELGKARPLVVIAPSSADPTLRGLNKALEDPATQAAFKERNLVLYSVANMMGKREDKNLEQQTTMALIRELKLGASKGTKVILVGKDGERHMLKDDDTGEAIDPQVILKAVDELPASEKAVAAPEPVAAAPQAKDKDSKPAKPAKPAAPPKPLED
>NZ_CP015876.1|WP_014753788.1|3832540_3837034_-|hypothetical-protein
MDTTLPSDAQAAIDAFQDGIIGRRLPPWLRHAPAEQLPEIGRALSNSLRCCEQVNTVLRGIEGLDSFVASALGKALDERYGLGRNPHVLRFLEGRREPVINSQPVGAHLTTVVYEEKPLLEVALRNFTAAQAQEGGQPRGNRLLLPRHGTAKPPTSIEFAGLCRELDLGERYQRHLDAILTPTGSAERLVSQLVDATRYTMLVDAYKARQEGTLDASELNVMVAVCEKGKLPRLAGDLVQARQLKLLGCQIEQVTVFVVVEQGVLFNTTRRVLLYVPGDPFSPWRAFESLDKLNRELGRCLRDKAYQRFFSRFVLRRDSQAFFAQVAERFDDLPGWAFRDLEPRLQAYPQPLFISLAQARIHQIKDDAAMIAVPVARLDREVQRQHDLRLAAEGWALLNLASFFVPGVGLALLAVTACELLGEVYHGAEAWQQGDRQEALDHLTHVATDLAVLATTVAGVGVARRVWARSAKVDAMVPARLEDGTEKLWQHDLTLFQSQAPVAASSRDALGIRRQDGRAWIEMDGHHYRVAEAGDDQWQLYPVDGHGPLLRHNGAGAWRLWSEQPARWTDKYRMFRRLGEPFNRLNDEQIDEVLLFHGLDGDDLRGLHVHAQAPSPGMIDSVERVRLDQRIRSMIGRLRSGEPVADTTVLDHARRLPGASGLTDQALATLAWTQRRTLLQHLFEALQPSDTPGSAALRRVFPGLSARTAQALVQAASSVDRMRLRSSGRVALGLAEAARGSVLATRQARVFEALYLDTPQHADLARVALGLLRYVPGGEQGVCWRLYEGCLGGPMLAKTEQGQRAFDLVHVNGTFQLHGSQGTALGEAGELFDVMAPAYTEAQRAAMGIGDPFAHNLRVILAREAARHRDEISRLLGAVRPGAVRGPMRLADGRIGYPLGGGGVGGFASRGSALRATLRDLFPWLSDEQVETFADDARRSGQQIEHVLADLRNEFAILRITLNTWVARGQGDVREDREALRQTLFNCWRRSVGVGELQINAQENLHVMFCNFRSSGLPNIPPQVSFRGVTSLSLLHLDLLEVPSSLLLAFPNLQTLDLGGNLLTRLPQPLLQIAQLRHLSLTNNRIVLNIAQTATLASCTNLQSLDLSHNPLGSRFTLAGLAELRWLNLRDTQISQFPLGVFDNAQLVSVDLRDNRIRHIPEGFYQLPLWHRRRFRLNANPLGEAQTLRLQASLSSDDPALDEEQVLLRLQHAREVWGDAVAPEHRGLMLAAWDSLDSGQDAERFFRVLRQLLLSEDFRVNARALGNRVMAVLQAMAITPELRQNLLSVANDEWGCQDGATWCLSNLELNLLVWQVEHAAQGESERALLDLGRRLWRQDAVDMFATRWALQHGRTLEGSEVGLAFRIGLRERLDLPLQVGEMSFLAISGVLEADLAEAEAAVRDAETPEEIARSMVDREFWQAHLERSHPERFAAVDLPFRRQLETVLDDEALSEGARIDQADAIRDAQRAARRGLMLDMTIQAMEMGPKGPSIDVR
>NZ_CP015876.1|WP_014753791.1|3841632_3843993_-|DNA-polymerase-II
MELQQGFVLTRHWHDTPEGTCVEFWLATDAGPRLLRLAAQESVAFIPQAQAEHARVLLANEAGTKLKPLRLKDFEHRPMLGLYARQHRQLMQLEQRLRTAGIDVFEADIRPPERYLMERFITAPVQFTGQPDAQGVYRDAQLKPQPGYRPALRLVSLDIETSERGELYSIALEGCGQRQVYMLGPANGDATGLDFDLEYCADRAALITRLNQWMAKHDPDAIIGWNLVQFDLRLLHEHAKSLQVPLTLGRNGAVMTLRSHAGGGHVFADAPGRLLIDGIEALRSATWSFASFSLENVAQTLLGEGKAIDTPYQRMDEINRRFAEDKPALARYNLKDCELVTRIFAHTRLLDFLLERASVTGLAVDRSGGSVAAFCHLYIPQMHRLGFVAPSLGSRPDEASPGGFVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLRQPDDAHSVEGFRGGRFSRTQHCLPAIVERVWQGREAAKREGNAPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITMRGHQIMRQTRSLIEACGYDVIYGDTDSTFVWLKGAHAEADAARIGRELVAKVNQWWQAHLHETMNLQSALELQFEVHYRRFLMPTIRGTDEGSKKRYAGLVQRADGSQEMVYKGLESVRTDWSPLARQFQQELYGRVFRSEPYRDYVREYVRRTLAGEQDELLVYRKRLRRPLADYQRNVPPHVRAARLADDYNKRLQRPLQYQRGGWISYVITTAGPEPLENLQAPIDYDHYISRQLLPVADAILPFVGDDFARLTDHQLLLF
>NZ_CP015876.1|WP_012052940.1|3844059_3845250_-|MFS-transporter
MSQTSSAPVLAASNERLPVGGLLALAMTGFIAILSETLPAGLLDQIADGMHISQAMAGQWVTAYALGSLLTAIPLVTLTQGWYRRRALLLAIIGFVLFNGLTALSDSNSLTLVLRFFTGAAAGLAWGLIAGHARRMVPVPLQGRAMALAMLGQPIALSLGLPIATWLGAGLGWRATFVVVTLVASLLVVWVLRSVPDYPGQAAGKRPAAMQVLRTPGVLIVLLVILTWILGHNILYTYIVPLLAAAGMAADIGPVLMVFGLSALAGIGLVGLLVDRHLRKLVLLSLAGFALATLALGQASSWLVYLSIALWGMTYGGAPTLLQTACADAAGQGGDVAQSMLVTVWNCAIALGGIIGGLLLTGAGVAWFGGVVLGLIALAWLLAVAGRGSGFVAGRR
>NZ_CP015876.1|WP_029611759.1|3845367_3846264_+|LysR-family-transcriptional-regulator
MDSLSGFVVFNRVAETRSFVAASQSLGISASAVGKRVARLESRLGVRLFHRSTRSITLTAEGTMFLERSRRILAEIEATEQELSQASETPRGRLRVSMPQVTRLVMPALAEFMALYPQVELDLDFSDRMVDIVGEGFDVVMRGGQPVDSRLSAKFLGHFQHRLVASPEYLRERGTPLHPRDLAAHTCLHYRFPSNGKLETWPLRQEHPEQAYDIPISMVCNHVETRVCFALNHRGITCLPDFNVGRELGNGSLVSVLDDFMERRGSFYLLWPSGRQMPPKLRVFIDFMLARVFNRTGS
>NZ_CP015876.1|WP_003250438.1|3846244_3847165_-|LysR-family-transcriptional-regulator
MSERIQALHALRAFEVASRYGSFTRAAEELALTQGAVSHHIKTLEALFGCDLFERRGPKLSLTEHGRLLAQELKVGFKIIENACALLRQDRYGLRLKAPSTLTVRWLLRALDAFKKVEDNCSVQLSSVWMDIDSVDFYSEPYDCAILLASGRFPADIESFKLFDEWLIPVCHPDYMTQAQPQLSDLPRCEFLHPSPDRRDWRRWLARMDALDISIDQGQVFDTLDQGISAAQQGLGISVVDLVLASTDLAAGRLVTPFKHAVATGDGYYMTWLKASPKARQMHKLRDFLLGQVPPLAYKDINYLYG
>NZ_CP015876.1|WP_014753794.1|3847325_3848114_+|YqcI/YcgG-family-protein
MFTGYGNCYRLDALELAAEHGHTMQHWTFKTIEHFRSILANPEFPCLFGRKAVNGETCHILFARAEQLADDIAQGLANYVRTVAPIAPKQRIGSPLVVFLETAAGSSLAEQQALAWKVLRGVHARDPHPWPQGIPTDPDDTGWSFCYAGMPLFINMNFPGHQQMKSRNLGQHITFVINPRENFDEVANANTESGKRIRERIRERVHHYNDGVVPDTLGFFGDTDNYEWKQYQLQEAGSLNPSRCPFHAHAAHQATPDILIEN
>NZ_CP015876.1|WP_010953344.1|3848116_3848743_+|LysE-family-translocator
MNTALTATYALTVLLLIATPGPVVALIVNTAAASGSRKAMFTAVGTNWASLVLIGAAAWIILTSAAIDKTWLSTMSLLGCLFIGYIAVGTLRDALQAPASDAASEAPKAGRGGLMQGFMVGISNPKDIIFFIAFFPQFIQITESFGKSMVVLSLLWVAIDFAVLSLYIFAIGKIASQRSNRIISLASGVALLLIAAGGLLYNLKELAA
>NZ_CP015876.1|WP_014753795.1|3848782_3849865_+|hypothetical-protein
MTTTDARPSPSPLQQDYQRFLLLGSRRAPYMLHVHETGYRSGTINTDALGLRYSHCAGKRFSAAEHGGASRINLLVGGSTALGIGASSDEHTVASHLSMLTGEVWLSLAGCGLNATQELMMFLTHQHRLGQLGHVVVLSGLNSLAHEALCEVLAGTNDPQHAKAYQAFLNSFSEGMQPCAPPRRQSLWRRIGQALTPPVVTAPVSWPLSSPEKRLARAADNIGRTLRQWDRLLADSHATLTFILQPLLPWCRDTLPAGEQAMLTALQQQPANFDRLLEGAFDRQLHSAFFRRIKSQADPVPCYDMNCMLDSSPVFGADLFIDRLHLNDLGNNALAKVITAKLGLAQEKHAQRKVTPIKLV
>NZ_CP015876.1|WP_014753796.1|3850003_3850699_+|hypothetical-protein
MSLVRRLPPLLAALMPLAAQALEVRIDPHADLLYRQALPLLEQADNQDDSASTLRTAVGGDPELSRQGQAMAHTLPTAVALLKKSVALGHPVAQYRLALYYMTYLPAAQIPEAACPLLEASLQQGFAAPAPAIATWCQPYNVSSEYRTALEAIPSMATVYAPYYPQPATRLACNRSRPQGLEMLWGRQRDYQAEVYRLLGDLDPQQRTSLLQKAVDINGCATAQQLLTSRP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

234397 : 295290

Bacillus_virus(30.0%)

transposase,protease,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004576370.1\|234397_234880_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_014755033.1\|234989_235391_+	RNA-binding protein S4	NA	NA	NA	NA
WP_004576368.1\|235418_236213_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_011953214.1\|236333_237233_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_003255806.1\|237412_238954_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	7.3e-125	46.7
WP_014755037.1\|239370_239811_+	thioesterase family protein	NA	NA	NA	NA
WP_003255803.1\|239867_240350_-	hypothetical protein	NA	NA	NA	NA
WP_011953216.1\|240546_242892_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_011953217.1\|242897_243728_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_010951629.1\|243903_244344_+	peptidoglycan-binding protein LysM	G3MBQ1	Bacillus_virus	9.6e-06	36.4
WP_003255795.1\|244455_245118_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_003255794.1\|245182_245749_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_003255792.1\|245745_246564_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_003255791.1\|246710_247166_-	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
WP_011953218.1\|247165_248572_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_004575931.1\|248568_250383_-	sensor histidine kinase	NA	NA	NA	NA
WP_011953219.1\|250425_250971_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.3e-49	53.4
WP_011953220.1\|251249_252356_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	8.7e-104	50.8
WP_014755042.1\|252814_254884_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_003255784.1\|255358_256678_+	OprD family porin	NA	NA	NA	NA
WP_014755044.1\|256829_258500_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_017147919.1\|258745_260113_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_010951640.1\|260114_260834_-	response regulator	W8CYM9	Bacillus_phage	1.8e-30	34.5
WP_014755047.1\|260974_263272_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_011953227.1\|263422_263629_-	DUF3079 domain-containing protein	NA	NA	NA	NA
WP_172402800.1\|263810_264164_+	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA
WP_004575922.1\|264205_264679_+	transcriptional regulator	NA	NA	NA	NA
WP_011953229.1\|265099_265315_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011953230.1\|265311_265635_-	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	1.2e-05	45.6
WP_014755049.1\|266159_267302_-	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_014755052.1\|269096_269927_-	DUF4393 domain-containing protein	A0A0R6PGX6	Moraxella_phage	6.2e-14	27.8
WP_014755053.1\|270031_270331_-	hypothetical protein	NA	NA	NA	NA
WP_014755055.1\|270886_271180_+\|transposase	transposase	NA	NA	NA	NA
WP_014755056.1\|271176_272040_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.6e-42	38.3
WP_041167268.1\|272279_273128_-	hypothetical protein	NA	NA	NA	NA
WP_010951646.1\|273401_273650_-	hypothetical protein	NA	NA	NA	NA
WP_003255753.1\|274175_274466_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_014755059.1\|274820_276026_-	methyltransferase	NA	NA	NA	NA
WP_014755060.1\|276137_276827_-	ABC transporter permease	NA	NA	NA	NA
WP_003255749.1\|276826_277519_-	ABC transporter permease	NA	NA	NA	NA
WP_011953233.1\|277573_278326_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003255746.1\|278337_279111_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.4e-21	32.0
WP_003255745.1\|279742_281128_+	GABA permease	NA	NA	NA	NA
WP_011953234.1\|281331_281775_-	hypothetical protein	NA	NA	NA	NA
WP_162182114.1\|281962_282835_-	polyphosphate kinase 2	NA	NA	NA	NA
WP_003255742.1\|283279_283552_-	oxidative damage protection protein	NA	NA	NA	NA
WP_011953236.1\|283548_284616_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_011953237.1\|284612_286859_-	AsmA family protein	NA	NA	NA	NA
WP_014755064.1\|287126_288788_+	OFA family MFS transporter	NA	NA	NA	NA
WP_003255736.1\|289059_289653_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_003255735.1\|289653_290292_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_014755065.1\|290292_290553_+	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_014755066.1\|290580_291318_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_003255729.1\|291328_292099_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_017148003.1\|292237_293416_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-25	36.7
WP_172830946.1\|293412_294261_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_010951661.1\|294342_295290_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA

DBSCAN-SWA_2

1048439 : 1056219

Thermobifida_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003255139.1\|1048439_1049294_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	2.4e-08	31.9
WP_003255137.1\|1049296_1049761_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_003255135.1\|1049773_1050082_-	ribosome-associated translation inhibitor RaiA	A0A0K1LP60	Escherichia_phage	4.4e-05	34.1
WP_003255133.1\|1050161_1051655_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_003255132.1\|1051831_1052557_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.4e-23	26.5
WP_003255131.1\|1052557_1053082_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_012051313.1\|1053068_1053641_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_003255129.1\|1053649_1054174_-	HAD family hydrolase	A0A140XBD6	Dickeya_phage	6.9e-27	48.1
WP_014755439.1\|1054186_1055161_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.0e-36	32.8
WP_003255127.1\|1055409_1056219_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.7e-25	32.5

DBSCAN-SWA_3

1329588 : 1401001

uncultured_Caudovirales_phage(48.72%)

plate,terminase,capsid,tRNA,holin,portal,tail,head,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004575745.1\|1329588_1331304_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_012051471.1\|1331464_1332730_-	OprD family porin	NA	NA	NA	NA
WP_012051472.1\|1333421_1333841_+	HIT domain-containing protein	NA	NA	NA	NA
WP_014755587.1\|1333842_1334049_+	protein SlyX	NA	NA	NA	NA
WP_003254784.1\|1334170_1334764_-	cold-shock protein	A0A1X9IGI9	Lactococcus_phage	2.3e-10	48.3
WP_012051474.1\|1335043_1335517_+	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	8.2e-19	37.1
WP_003254778.1\|1335905_1336235_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_003254776.1\|1336328_1336550_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_004575741.1\|1336643_1338419_+\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	5.6e-12	26.3
WP_003254770.1\|1338533_1339280_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003254769.1\|1339465_1339990_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_003254768.1\|1340099_1340717_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_003254766.1\|1340713_1341760_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	7.9e-06	27.4
WP_014755590.1\|1341885_1342338_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
WP_010952367.1\|1342340_1343036_+	protein TolQ	NA	NA	NA	NA
WP_003254760.1\|1343050_1343503_+	protein TolR	NA	NA	NA	NA
WP_014755591.1\|1343502_1344621_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_003254757.1\|1344617_1345919_+	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_003254755.1\|1345973_1346474_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
WP_003254754.1\|1346480_1347287_+	tol-pal system protein YbgF	NA	NA	NA	NA
WP_003254753.1\|1347455_1348103_+	7-carboxy-7-deazaguanine synthase QueE	NA	NA	NA	NA
WP_076403786.1\|1348102_1348795_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	7.0e-27	36.9
WP_010952370.1\|1349027_1349987_-	cation transporter	NA	NA	NA	NA
WP_014755593.1\|1350129_1352196_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.7e-29	42.0
WP_014755594.1\|1352262_1353615_-	APC family permease	NA	NA	NA	NA
WP_012051482.1\|1354061_1355570_+	YdgA family protein	NA	NA	NA	NA
WP_014755598.1\|1355844_1356903_+	quinolinate synthase NadA	NA	NA	NA	NA
WP_003254746.1\|1357074_1358511_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_003254745.1\|1358633_1358873_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_003254744.1\|1358893_1359964_+	AI-2E family transporter	NA	NA	NA	NA
WP_014755600.1\|1360080_1360554_-	peroxiredoxin	NA	NA	NA	NA
WP_003254741.1\|1360565_1361126_-	glycine cleavage system protein R	NA	NA	NA	NA
WP_003254739.1\|1361385_1362273_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_003254738.1\|1362288_1363410_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_003254735.1\|1363410_1364169_+	MBL fold metallo-hydrolase	A8ATK9	Listeria_phage	1.2e-16	30.5
WP_003254733.1\|1364199_1364910_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	5.1e-41	38.0
WP_041167285.1\|1365299_1366448_+	hypothetical protein	NA	NA	NA	NA
WP_014755603.1\|1366405_1367677_-	DUF3596 domain-containing protein	Q76UT6	Pseudomonas_virus	1.8e-41	39.7
WP_014755604.1\|1367673_1367928_-	hypothetical protein	NA	NA	NA	NA
WP_014755606.1\|1368156_1368624_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158515024.1\|1368998_1369349_-	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_014755609.1\|1369345_1369600_-	AAA family ATPase	NA	NA	NA	NA
WP_014755610.1\|1369596_1370094_-	hypothetical protein	NA	NA	NA	NA
WP_014755611.1\|1370185_1370425_-	pyocin activator PrtN family protein	A0A2H4J8B4	uncultured_Caudovirales_phage	8.6e-17	55.8
WP_110389087.1\|1370421_1370898_-	hypothetical protein	A0A2H4J897	uncultured_Caudovirales_phage	1.2e-09	47.2
WP_049806377.1\|1371187_1371847_-	helix-turn-helix domain-containing protein	A0A2H4J8I0	uncultured_Caudovirales_phage	6.9e-40	55.2
WP_014755615.1\|1371944_1372142_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014755616.1\|1372360_1372849_+	hypothetical protein	A0A2H4JFM0	uncultured_Caudovirales_phage	3.5e-33	55.5
WP_041167290.1\|1372841_1373045_+	TraR/DksA C4-type zinc finger protein	A0A2H4JDJ0	uncultured_Caudovirales_phage	3.3e-17	67.6
WP_014755617.1\|1373041_1375801_+	bifunctional DNA primase/polymerase	A0A2H4JF22	uncultured_Caudovirales_phage	0.0e+00	65.3
WP_080580359.1\|1376125_1376677_+	hypothetical protein	NA	NA	NA	NA
WP_041167291.1\|1376881_1377229_+\|holin	holin	A0A2H4J893	uncultured_Caudovirales_phage	8.0e-40	74.1
WP_014755621.1\|1377371_1377893_+\|terminase	terminase small subunit	A0A2D1GMW4	Marinobacter_phage	9.6e-21	39.9
WP_193399786.1\|1377936_1379823_+\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	4.7e-166	50.2
WP_014755623.1\|1379835_1380051_+	hypothetical protein	NA	NA	NA	NA
WP_014755624.1\|1380053_1381661_+\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	6.3e-95	41.9
WP_014755625.1\|1381663_1382884_+	S49 family peptidase	A0A219YB02	Aeromonas_phage	2.0e-48	42.7
WP_041167293.1\|1382897_1383248_+\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	4.9e-13	44.1
WP_014755627.1\|1383259_1384288_+\|capsid	major capsid protein	A0A0C5ABI0	Bacteriophage	2.0e-70	41.6
WP_014755628.1\|1384289_1384466_+	hypothetical protein	NA	NA	NA	NA
WP_110389074.1\|1384462_1384789_+	hypothetical protein	NA	NA	NA	NA
WP_014755630.1\|1384785_1385454_+\|tail	phage tail protein	A0A2H4JBV1	uncultured_Caudovirales_phage	6.4e-70	61.4
WP_014755631.1\|1385446_1385977_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.5e-34	48.7
WP_014755632.1\|1385973_1386576_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	2.1e-51	67.1
WP_014755633.1\|1386618_1386888_+	hypothetical protein	NA	NA	NA	NA
WP_014755634.1\|1386890_1387217_+	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	4.7e-34	65.7
WP_014755635.1\|1387213_1388194_+\|plate	baseplate J/gp47 family protein	Q37840	Escherichia_phage	5.4e-49	38.9
WP_014755636.1\|1388190_1389003_+\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	9.1e-18	37.3
WP_041167294.1\|1388999_1389878_+\|tail	phage tail protein	A2I2X8	Vibrio_virus	1.6e-20	38.8
WP_014755638.1\|1389884_1390625_+	hypothetical protein	NA	NA	NA	NA
WP_014755639.1\|1390647_1391109_+	hypothetical protein	A0A077K9S5	Ralstonia_phage	5.2e-18	47.4
WP_014755640.1\|1391203_1392367_+\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	2.1e-185	85.0
WP_014755641.1\|1392379_1392889_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	7.6e-63	67.9
WP_014755642.1\|1392935_1393232_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_014755643.1\|1393364_1396754_+\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	6.4e-65	32.8
WP_014755644.1\|1396763_1397609_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	6.9e-93	61.1
WP_014755645.1\|1397583_1397790_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	6.7e-18	62.7
WP_014755646.1\|1397848_1398892_+	phage late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.2e-144	72.6
WP_014755647.1\|1398931_1399501_+	glycoside hydrolase family 19 protein	A0A2H4JHX4	uncultured_Caudovirales_phage	8.5e-63	66.0
WP_014755648.1\|1399500_1400055_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	2.5e-27	47.8
WP_041167295.1\|1400206_1401001_+	DNA adenine methylase	C7BGE1	Burkholderia_phage	1.2e-99	65.0

DBSCAN-SWA_4

2058522 : 2069143

uncultured_Caudovirales_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010954808.1\|2058522_2059803_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.6e-96	54.4
WP_012051830.1\|2059803_2061195_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_004576098.1\|2061300_2062260_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_014755969.1\|2062354_2063356_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.8e-156	80.5
WP_003251195.1\|2063352_2063688_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	5.7e-43	75.7
WP_014755970.1\|2063684_2063981_-	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	3.4e-23	58.6
WP_010954803.1\|2063980_2064340_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	8.6e-37	66.7
WP_003251188.1\|2064341_2064734_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.1e-53	79.8
WP_003251186.1\|2064829_2066209_-	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.6e-27	51.1
WP_003251184.1\|2066523_2067195_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-105	91.0
WP_012051834.1\|2068375_2069143_+	3-oxoacyl-ACP reductase FabG	A0A0M4JSW6	Mollivirus	3.3e-09	23.7

DBSCAN-SWA_5

2155983 : 2220092

Pseudomonas_phage(50.0%)

terminase,capsid,protease,holin,integrase,portal,tail,head

attL 2163639:2163654|attR 2217166:2217181

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003251082.1\|2155983_2156751_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	5.0e-18	31.3
WP_014756053.1\|2156787_2157855_-	phosphotransferase family protein	NA	NA	NA	NA
WP_003251077.1\|2158038_2158356_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_014756055.1\|2158412_2159123_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_014756056.1\|2159320_2160340_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	4.1e-23	26.4
WP_064590543.1\|2160706_2161684_+\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	1.2e-117	65.8
WP_064590544.1\|2161680_2161926_-	hypothetical protein	B5WZU8	Pseudomonas_phage	4.3e-24	68.8
WP_064590545.1\|2161954_2162197_-	hypothetical protein	NA	NA	NA	NA
WP_193399787.1\|2162206_2162383_-	hypothetical protein	A0A2H4J7S3	uncultured_Caudovirales_phage	1.3e-22	82.8
WP_064590546.1\|2162379_2162712_-	hypothetical protein	NA	NA	NA	NA
WP_064590547.1\|2162699_2163161_-	DUF2591 domain-containing protein	A0A1B0VMD7	Pseudomonas_phage	5.0e-13	34.4
WP_064590548.1\|2163435_2163687_-	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	1.4e-38	94.0
2163639:2163654	attL	NA	NA	NA	NA
WP_193399788.1\|2163683_2163956_-	hypothetical protein	A0A1B0VM42	Pseudomonas_phage	1.1e-33	71.1
WP_014859785.1\|2164448_2164610_+	hypothetical protein	NA	NA	NA	NA
WP_148661747.1\|2164606_2165035_-	Lar family restriction alleviation protein	NA	NA	NA	NA
WP_064590551.1\|2165394_2167338_-	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	2.1e-286	71.5
WP_148661748.1\|2167522_2168110_+	hypothetical protein	NA	NA	NA	NA
WP_064590552.1\|2168089_2168842_-	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_020191955.1\|2168929_2169127_+	hypothetical protein	NA	NA	NA	NA
WP_064590553.1\|2169435_2169690_+	hypothetical protein	NA	NA	NA	NA
WP_064590554.1\|2169886_2170294_+	hypothetical protein	NA	NA	NA	NA
WP_064590555.1\|2170349_2170733_-	hypothetical protein	A0A0U4JNY7	Pseudomonas_phage	3.9e-27	46.5
WP_017147767.1\|2170839_2171061_+	hypothetical protein	NA	NA	NA	NA
WP_064590556.1\|2171084_2171846_-	hypothetical protein	A0A2H4J7T1	uncultured_Caudovirales_phage	2.7e-120	83.8
WP_148661749.1\|2171956_2172721_+	hypothetical protein	NA	NA	NA	NA
WP_064590558.1\|2172784_2173243_-	hypothetical protein	A0A2H4J101	uncultured_Caudovirales_phage	5.3e-47	60.5
WP_064590559.1\|2173239_2173509_-	hypothetical protein	NA	NA	NA	NA
WP_064590560.1\|2173527_2173911_-	helix-turn-helix transcriptional regulator	A0A0A0YWH0	Pseudomonas_phage	1.3e-19	49.1
WP_064590561.1\|2173917_2174769_-	ParB N-terminal domain-containing protein	A0A0U4JP11	Pseudomonas_phage	6.9e-85	58.2
WP_064590562.1\|2174899_2175205_-	hypothetical protein	NA	NA	NA	NA
WP_064590563.1\|2175571_2175901_+	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	4.1e-17	46.1
WP_064590564.1\|2175939_2178153_-	S8 family serine peptidase	NA	NA	NA	NA
WP_064590565.1\|2178157_2179249_-	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	4.3e-15	28.7
WP_064590566.1\|2179368_2180256_-	helix-turn-helix domain-containing protein	H2BD63	Pseudomonas_phage	2.7e-39	38.4
WP_064590567.1\|2180360_2180567_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_064590918.1\|2180905_2181613_+	helix-turn-helix domain-containing protein	J7I419	Pseudomonas_phage	2.0e-29	54.9
WP_064590568.1\|2181605_2182985_+	replicative DNA helicase	H2BD70	Pseudomonas_phage	8.2e-120	53.1
WP_053063471.1\|2182993_2183200_+	hypothetical protein	NA	NA	NA	NA
WP_064590569.1\|2183181_2183478_+	DUF1364 domain-containing protein	A5VW86	Enterobacteria_phage	5.8e-31	68.8
WP_064590570.1\|2183474_2183900_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	3.4e-40	65.6
WP_017147914.1\|2183896_2185195_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	5.9e-120	54.4
WP_017147913.1\|2185191_2185479_+	hypothetical protein	NA	NA	NA	NA
WP_029611783.1\|2185475_2185793_+	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	4.0e-30	61.0
WP_064590571.1\|2185805_2186492_+	hypothetical protein	J7HXH6	Pseudomonas_phage	2.3e-54	50.7
WP_158515025.1\|2186676_2187138_+	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_064590573.1\|2187197_2187572_+	hypothetical protein	A0A2H4J7X6	uncultured_Caudovirales_phage	7.8e-57	87.9
WP_064590574.1\|2187572_2187854_+\|holin	phage holin family protein	A0A2H4J0H1	uncultured_Caudovirales_phage	2.2e-43	94.6
WP_064590575.1\|2187853_2188192_+	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	7.3e-22	56.0
WP_064590576.1\|2188349_2188850_+\|terminase	terminase small subunit	A0A2H4J8R0	uncultured_Caudovirales_phage	4.6e-12	38.5
WP_064590577.1\|2188853_2190533_+\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	2.5e-195	61.5
WP_020190891.1\|2190683_2191982_+\|portal	phage portal protein	H2BDA8	Pseudomonas_virus	2.5e-187	72.4
WP_064590578.1\|2191998_2192856_+\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	2.7e-97	64.3
WP_016485706.1\|2192858_2194040_+\|capsid	phage major capsid protein	A0A218MGA4	Pseudomonas_phage	3.7e-121	60.9
WP_158515026.1\|2194088_2194631_+	hypothetical protein	NA	NA	NA	NA
WP_014756115.1\|2194635_2194977_+\|head,tail	phage gp6-like head-tail connector protein	C4ML08	Xanthomonas_virus	5.7e-14	39.1
WP_081272902.1\|2194973_2195300_+\|head,tail	head-tail adaptor protein	A0A2H4JC00	uncultured_Caudovirales_phage	7.3e-19	48.2
WP_019750982.1\|2195308_2195479_+	hypothetical protein	A0A2D1GNQ5	Pseudomonas_phage	1.4e-05	53.7
WP_064590579.1\|2195482_2196058_+	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	1.4e-52	55.8
WP_014756119.1\|2196050_2196437_+	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	5.2e-56	84.4
WP_014756120.1\|2196493_2196994_+	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	2.0e-68	75.8
WP_064590580.1\|2197034_2197379_+	hypothetical protein	NA	NA	NA	NA
WP_014756122.1\|2197375_2197612_+	hypothetical protein	NA	NA	NA	NA
WP_064590581.1\|2197657_2200948_+\|tail	phage tail tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	2.4e-72	37.0
WP_014756124.1\|2200947_2201286_+\|tail	phage tail protein	I6PBN7	Cronobacter_phage	6.0e-16	38.8
WP_014756125.1\|2201282_2202032_+\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	1.1e-121	77.1
WP_019750984.1\|2202034_2202790_+	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	6.9e-121	76.9
WP_014756127.1\|2202786_2203380_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	8.0e-72	73.5
WP_081272903.1\|2203436_2210690_+\|tail	phage tail protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	66.7
WP_064590582.1\|2210686_2211067_+	hypothetical protein	NA	NA	NA	NA
WP_019750987.1\|2211050_2211221_+	hypothetical protein	NA	NA	NA	NA
WP_064590583.1\|2211281_2211503_+	hypothetical protein	NA	NA	NA	NA
WP_020189967.1\|2212202_2212556_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_064590584.1\|2212921_2213410_+	glycoside hydrolase family 104 protein	Q9MC90	Pseudomonas_phage	9.9e-36	48.1
WP_064590585.1\|2213406_2213919_+	DUF2514 family protein	NA	NA	NA	NA
WP_064590586.1\|2214154_2214379_+	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	3.5e-28	82.4
WP_017147736.1\|2214452_2214746_+	hypothetical protein	A0A2H4JER5	uncultured_Caudovirales_phage	1.4e-32	67.0
WP_017147901.1\|2214742_2215048_+	hypothetical protein	NA	NA	NA	NA
WP_064590587.1\|2215234_2215579_-	hypothetical protein	NA	NA	NA	NA
WP_041167305.1\|2216084_2217134_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	2.2e-101	56.9
WP_014756148.1\|2217135_2217432_-	hypothetical protein	A0A059VF56	Pseudomonas_phage	2.5e-05	61.7
2217166:2217181	attR	NA	NA	NA	NA
WP_014756149.1\|2217543_2218074_+	putative mannitol operon repressor	NA	NA	NA	NA
WP_064590588.1\|2218148_2220092_-	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	9.7e-292	72.6

DBSCAN-SWA_6

2500750 : 2506906

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012052738.1\|2500750_2501452_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.2e-104	79.0
WP_012052737.1\|2501465_2501936_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	5.7e-57	69.2
WP_014756341.1\|2501965_2503249_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	2.0e-176	75.8
WP_014756342.1\|2503270_2503618_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	1.7e-34	61.9
WP_017147688.1\|2503830_2504004_+	hypothetical protein	NA	NA	NA	NA
WP_014756344.1\|2504099_2504564_-	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_017147687.1\|2504733_2505591_-	glucose 1-dehydrogenase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	1.7e-70	50.5
WP_010953640.1\|2505785_2506310_+	hypothetical protein	NA	NA	NA	NA
WP_029611751.1\|2506366_2506906_-	type 1 glutamine amidotransferase	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	3.8e-20	34.3

DBSCAN-SWA_7

3023145 : 3076168

Ostreococcus_tauri_virus(25.0%)

transposase,protease,integrase

attL 3071876:3071891|attR 3083498:3083513

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017148342.1\|3023145_3024987_-\|protease	ATP-dependent zinc metalloprotease FtsH	C7U047	Ostreococcus_tauri_virus	7.9e-94	40.8
WP_012052281.1\|3025013_3025661_-	BON domain-containing protein	NA	NA	NA	NA
WP_012052280.1\|3025849_3026104_+	hypothetical protein	NA	NA	NA	NA
WP_012052279.1\|3026110_3028393_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.3e-57	29.5
WP_012052278.1\|3028554_3029445_+	universal stress protein	NA	NA	NA	NA
WP_014756736.1\|3029459_3029585_-	hypothetical protein	NA	NA	NA	NA
WP_012052277.1\|3029663_3030542_+	universal stress protein	NA	NA	NA	NA
WP_012052276.1\|3030543_3031116_-	phosphoribosyltransferase	NA	NA	NA	NA
WP_014756737.1\|3031431_3032613_+	cation:proton antiporter	NA	NA	NA	NA
WP_017148341.1\|3033042_3033480_+	YeeE/YedE family protein	NA	NA	NA	NA
WP_012052273.1\|3033481_3033910_+	membrane protein	NA	NA	NA	NA
WP_041167320.1\|3035492_3036461_-	DNA-binding protein	NA	NA	NA	NA
WP_064590590.1\|3036590_3037670_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_148661752.1\|3038068_3038719_+	hypothetical protein	NA	NA	NA	NA
WP_014756746.1\|3038708_3040667_+	hypothetical protein	NA	NA	NA	NA
WP_110389090.1\|3040687_3041641_+	ATP-binding protein	NA	NA	NA	NA
WP_014756748.1\|3041646_3043089_+	hypothetical protein	NA	NA	NA	NA
WP_014756749.1\|3043097_3043514_-	hypothetical protein	NA	NA	NA	NA
WP_041167323.1\|3043604_3043877_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041167324.1\|3044452_3045544_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_014756755.1\|3046818_3047991_-	amidohydrolase	NA	NA	NA	NA
WP_041167325.1\|3047994_3049284_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.0e-67	37.0
WP_014756758.1\|3049621_3050539_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041167326.1\|3050680_3051598_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014756762.1\|3051648_3052326_-	phospholipase	NA	NA	NA	NA
WP_041167327.1\|3052318_3053161_-	dioxygenase	NA	NA	NA	NA
WP_014756764.1\|3053181_3053811_-	NADPH-dependent F420 reductase	NA	NA	NA	NA
WP_014756765.1\|3054045_3055002_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_014756766.1\|3055086_3055701_-	nitroreductase family protein	NA	NA	NA	NA
WP_014756767.1\|3055724_3056078_-	hypothetical protein	NA	NA	NA	NA
WP_014756768.1\|3056154_3056352_-	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_014756769.1\|3056664_3057066_-	DoxX family protein	NA	NA	NA	NA
WP_014756770.1\|3057204_3058104_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014756771.1\|3058260_3059055_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_014756772.1\|3059098_3060085_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_041167328.1\|3060139_3060949_-	TIM barrel protein	NA	NA	NA	NA
WP_041167329.1\|3060972_3061773_-	TIM barrel protein	NA	NA	NA	NA
WP_014861923.1\|3061796_3062789_-	LLM class oxidoreductase	NA	NA	NA	NA
WP_041167392.1\|3062930_3063824_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041167393.1\|3063843_3064170_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014756779.1\|3064241_3065162_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014756780.1\|3065178_3066051_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_041167330.1\|3066198_3067320_+	muconate cycloisomerase family protein	NA	NA	NA	NA
WP_014756783.1\|3067343_3067634_+	muconolactone Delta-isomerase	NA	NA	NA	NA
WP_014756784.1\|3067683_3068619_+	catechol 1,2-dioxygenase	NA	NA	NA	NA
WP_014819629.1\|3069480_3070770_-\|transposase	ISL3-like element ISPpu12 family transposase	A0A2D1GQC1	Lysinibacillus_phage	3.6e-85	40.4
WP_004863699.1\|3070791_3071304_-	signal peptidase II	NA	NA	NA	NA
WP_004364974.1\|3071307_3072204_-	cation transporter	NA	NA	NA	NA
3071876:3071891	attL	NA	NA	NA	NA
WP_009403731.1\|3072299_3072707_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_080580404.1\|3072946_3073339_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041167331.1\|3073623_3074916_-\|integrase	integrase	NA	NA	NA	NA
WP_080580405.1\|3075037_3076168_-\|integrase	integrase	NA	NA	NA	NA
3083498:3083513	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3644483 : 3692458

uncultured_Caudovirales_phage(45.83%)

terminase,integrase,tail,holin

attL 3652079:3652094|attR 3694691:3694706

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064590598.1\|3644483_3647537_-	hypothetical protein	B5WZT8	Pseudomonas_phage	1.7e-221	41.4
WP_064590599.1\|3647533_3647911_-	hypothetical protein	B5WZT7	Pseudomonas_phage	1.2e-25	44.1
WP_064590600.1\|3647913_3648393_-	DUF1833 family protein	J7I404	Pseudomonas_phage	8.5e-24	40.8
WP_064590601.1\|3648389_3648842_-	hypothetical protein	A0A2H4PI05	Pseudomonas_phage	4.6e-11	27.0
WP_019751376.1\|3648868_3649015_-	hypothetical protein	NA	NA	NA	NA
WP_064590602.1\|3649101_3649548_-	hypothetical protein	NA	NA	NA	NA
WP_064590603.1\|3649615_3652546_-\|tail	phage tail length tape measure family protein	A0A2H4J9A1	uncultured_Caudovirales_phage	1.4e-108	36.9
3652079:3652094	attL	NA	NA	NA	NA
WP_064590604.1\|3652603_3652903_-	hypothetical protein	NA	NA	NA	NA
WP_064590605.1\|3652950_3653205_-	hypothetical protein	NA	NA	NA	NA
WP_017147745.1\|3653312_3653798_-	hypothetical protein	NA	NA	NA	NA
WP_017147746.1\|3653855_3655025_-	Ig domain-containing protein	A0A2C9CX52	Yersinia_phage	1.4e-06	57.6
WP_017147747.1\|3655086_3655494_-	hypothetical protein	NA	NA	NA	NA
WP_064590606.1\|3655490_3655889_-	hypothetical protein	A0A059VF88	Pseudomonas_phage	3.5e-31	54.5
WP_064590607.1\|3655888_3656275_-	hypothetical protein	A0A059VA70	Pseudomonas_phage	5.3e-24	48.4
WP_148661753.1\|3656231_3657263_-	hypothetical protein	A0A2H4IY91	uncultured_Caudovirales_phage	9.6e-89	49.1
WP_064590609.1\|3657259_3657778_-	hypothetical protein	A0A059VG19	Pseudomonas_phage	9.5e-37	54.0
WP_064590610.1\|3657820_3658201_-	hypothetical protein	A0A2H4J908	uncultured_Caudovirales_phage	1.6e-20	56.2
WP_064590611.1\|3658213_3659173_-	DUF2184 domain-containing protein	A0A2H4J526	uncultured_Caudovirales_phage	9.7e-152	82.9
WP_064590612.1\|3659191_3659677_-	hypothetical protein	A0A2H4J1G1	uncultured_Caudovirales_phage	1.2e-44	63.2
WP_064590613.1\|3659689_3660823_-	DUF2213 domain-containing protein	A0A2H4J6J7	uncultured_Caudovirales_phage	3.3e-143	70.9
WP_064590616.1\|3660831_3662628_-	DUF1073 domain-containing protein	A0A2H4J4I9	uncultured_Caudovirales_phage	8.0e-208	60.0
WP_064590618.1\|3662627_3663914_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.6e-144	58.6
WP_064590620.1\|3663900_3664362_-	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	4.0e-47	74.0
WP_064590622.1\|3664392_3664989_-	hypothetical protein	A0A0S2SYA5	Pseudomonas_phage	1.5e-86	75.8
WP_064590625.1\|3664997_3665210_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	7.3e-20	71.4
WP_017148061.1\|3665213_3665447_-	hypothetical protein	NA	NA	NA	NA
WP_064590627.1\|3665506_3665824_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_064590629.1\|3665820_3666210_-	hypothetical protein	A0A2H4J7X6	uncultured_Caudovirales_phage	6.1e-20	42.9
WP_064590631.1\|3666220_3666484_-	hypothetical protein	NA	NA	NA	NA
WP_064590632.1\|3666615_3667206_-	hypothetical protein	A0A0S2SYA9	Pseudomonas_phage	1.1e-62	57.0
WP_017147753.1\|3667324_3667927_-	recombination protein NinG	A0A0U1VZM0	Pseudomonas_phage	4.2e-52	54.3
WP_016487776.1\|3667926_3668325_-	recombination protein NinB	A0A059VG13	Pseudomonas_phage	2.7e-63	85.6
WP_064590634.1\|3668317_3668578_-	hypothetical protein	A0A2H4J105	uncultured_Caudovirales_phage	6.4e-26	64.7
WP_017147756.1\|3668574_3668889_-	hypothetical protein	A0A2H4JG78	uncultured_Caudovirales_phage	1.1e-06	37.5
WP_064590636.1\|3668888_3669614_-	Replication protein P	A0A2H4J1T4	uncultured_Caudovirales_phage	1.4e-86	71.5
WP_064590639.1\|3670763_3671564_-	Rha family transcriptional regulator	F1C5A3	Cronobacter_phage	8.6e-37	48.2
WP_014859733.1\|3671664_3671877_-	hypothetical protein	A0A2H4IZI7	uncultured_Caudovirales_phage	3.4e-17	64.7
WP_059395556.1\|3671895_3672105_-	hypothetical protein	W6MW47	Pseudomonas_phage	7.2e-20	68.1
WP_059395557.1\|3672134_3672311_-	Cro/Cl family transcriptional regulator	R9TPV3	Vibrio_phage	2.6e-07	55.1
WP_059395558.1\|3672419_3673088_+	helix-turn-helix domain-containing protein	A0A2H4J868	uncultured_Caudovirales_phage	2.8e-49	63.6
WP_064590641.1\|3673096_3673348_+	hypothetical protein	NA	NA	NA	NA
WP_064590643.1\|3673546_3674461_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	2.0e-50	40.2
WP_059395562.1\|3674652_3675144_+	hypothetical protein	NA	NA	NA	NA
WP_064590645.1\|3675195_3675804_-	hypothetical protein	NA	NA	NA	NA
WP_064590647.1\|3676333_3676519_+	hypothetical protein	A0A2H4JG89	uncultured_Caudovirales_phage	2.0e-21	85.2
WP_158515030.1\|3677375_3677777_+	hypothetical protein	A0A088C3M9	Shewanella_sp._phage	1.5e-18	43.5
WP_017147760.1\|3677987_3678404_+	hypothetical protein	NA	NA	NA	NA
WP_064590652.1\|3678400_3678595_+	hypothetical protein	A0A1B0VMB8	Pseudomonas_phage	2.1e-13	59.7
WP_064590654.1\|3678591_3679167_+	hypothetical protein	A0A0C7U2Q1	Pseudomonas_phage	3.0e-15	33.0
WP_064590656.1\|3679163_3679385_+	hypothetical protein	A0A2H4J1S2	uncultured_Caudovirales_phage	6.9e-13	55.6
WP_064590658.1\|3679374_3679830_+	hypothetical protein	NA	NA	NA	NA
WP_017147762.1\|3680117_3680849_+	hypothetical protein	A0A2H4J2D5	uncultured_Caudovirales_phage	3.4e-125	94.7
WP_017147763.1\|3680845_3681409_+	siphovirus Gp157 family protein	A0A2H4IZG3	uncultured_Caudovirales_phage	1.5e-91	93.6
WP_017147764.1\|3681416_3681929_+	hypothetical protein	A0A2H4J7C8	uncultured_Caudovirales_phage	1.2e-12	35.5
WP_158515031.1\|3682187_3682562_-	hypothetical protein	NA	NA	NA	NA
WP_017147766.1\|3682695_3682947_-	hypothetical protein	NA	NA	NA	NA
WP_064590660.1\|3683014_3683641_+	hypothetical protein	J9Q748	Salmonella_phage	9.5e-15	29.6
WP_162493564.1\|3683695_3684451_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_064590662.1\|3686059_3686284_-	hypothetical protein	NA	NA	NA	NA
WP_064590663.1\|3686426_3687086_+	hypothetical protein	Q5QF30	Pseudomonas_virus	2.1e-44	46.9
WP_064590666.1\|3687082_3687331_+	hypothetical protein	A0A2H4J399	uncultured_Caudovirales_phage	6.3e-39	96.4
WP_064590667.1\|3687327_3687840_+	hypothetical protein	A0A1B0VM38	Pseudomonas_phage	7.0e-08	57.1
WP_064590669.1\|3687836_3688229_+	DUF2591 family protein	A0A1B0VMD7	Pseudomonas_phage	8.0e-12	34.8
WP_064590671.1\|3688225_3688561_+	hypothetical protein	NA	NA	NA	NA
WP_172402816.1\|3689139_3689316_+	hypothetical protein	A0A2H4J7S3	uncultured_Caudovirales_phage	2.0e-23	86.2
WP_019438786.1\|3689605_3690784_+\|integrase	tyrosine-type recombinase/integrase	A0A059VF45	Pseudomonas_phage	3.1e-160	70.4
WP_064590676.1\|3691093_3692458_+\|integrase	site-specific integrase	A0A2H4IYX8	uncultured_Caudovirales_phage	1.3e-170	67.9
3694691:3694706	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3876843 : 3913043

Ectocarpus_siliculosus_virus(66.67%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003250377.1\|3876843_3877815_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_014753811.1\|3877811_3880109_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_017147731.1\|3880217_3880994_-	molecular chaperone	NA	NA	NA	NA
WP_017147732.1\|3881034_3881538_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_012052960.1\|3881541_3882075_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_012052961.1\|3882093_3882630_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_017147733.1\|3882660_3883188_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_017147734.1\|3883455_3885702_+	GAF domain-containing protein	Q8QNA6	Ectocarpus_siliculosus_virus	2.4e-20	22.8
WP_003250360.1\|3885717_3886179_+	response regulator	NA	NA	NA	NA
WP_014753816.1\|3886192_3888580_+	response regulator	Q8QNA2	Ectocarpus_siliculosus_virus	1.9e-10	28.6
WP_012052965.1\|3889030_3889273_+	hypothetical protein	NA	NA	NA	NA
WP_014753817.1\|3889405_3890476_+	cell division protein ZapE	NA	NA	NA	NA
WP_014753818.1\|3890547_3892437_-	propionyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	9.7e-55	29.7
WP_004573884.1\|3892617_3893484_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_014753820.1\|3893457_3894612_-	HPP family protein	NA	NA	NA	NA
WP_012052970.1\|3894931_3896251_-	sensor histidine kinase	NA	NA	NA	NA
WP_014591651.1\|3896247_3896916_-	response regulator transcription factor	NA	NA	NA	NA
WP_014753821.1\|3896916_3897231_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_014753822.1\|3897230_3897539_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_004573881.1\|3897758_3898838_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_012053047.1\|3898891_3899248_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_014753823.1\|3899274_3900036_-	hypothetical protein	NA	NA	NA	NA
WP_012053049.1\|3900103_3900571_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_012053050.1\|3900976_3903586_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_014753825.1\|3903660_3905145_-	2-methylcitrate dehydratase	NA	NA	NA	NA
WP_017147771.1\|3905316_3906507_-	2-methylaconitate cis-trans isomerase PrpF	NA	NA	NA	NA
WP_017147772.1\|3906658_3909247_-	Fe/S-dependent 2-methylisocitrate dehydratase AcnD	NA	NA	NA	NA
WP_003250313.1\|3909408_3910536_-	2-methylcitrate synthase	NA	NA	NA	NA
WP_012053054.1\|3910596_3911487_-	methylisocitrate lyase	NA	NA	NA	NA
WP_003250308.1\|3911483_3912200_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_010953297.1\|3912506_3913043_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA

DBSCAN-SWA_10

3962840 : 3989288

Ralstonia_phage(73.68%)

tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064590806.1\|3962840_3965030_-	hypothetical protein	A0A2D2W5A9	Ralstonia_phage	7.8e-181	50.6
WP_060518953.1\|3965039_3965600_-	hypothetical protein	NA	NA	NA	NA
WP_064590809.1\|3965584_3965998_-	hypothetical protein	NA	NA	NA	NA
WP_193399784.1\|3966053_3968273_-	hypothetical protein	A0A2D2W513	Ralstonia_phage	5.6e-227	53.6
WP_060518957.1\|3968402_3968990_-	hypothetical protein	A0A2R2ZGD2	Ralstonia_phage	1.0e-47	50.3
WP_064590813.1\|3969051_3970020_-	hypothetical protein	L7TJ83	Rhizobium_phage	5.6e-91	56.7
WP_064590815.1\|3970180_3970381_-	hypothetical protein	NA	NA	NA	NA
WP_049587553.1\|3970395_3970836_-	DUF1353 domain-containing protein	A0A2K9VHJ4	Pseudomonas_phage	2.4e-25	50.8
WP_193399785.1\|3970863_3971583_-	hypothetical protein	A0A2D2W594	Ralstonia_phage	5.4e-46	45.8
WP_064590825.1\|3971781_3973356_-\|head,tail	head-tail connector protein	A0A2R2ZGG8	Ralstonia_phage	2.1e-164	60.3
WP_010953250.1\|3973583_3973778_-	hypothetical protein	NA	NA	NA	NA
WP_148661757.1\|3973832_3975218_-	hypothetical protein	NA	NA	NA	NA
WP_081272918.1\|3975228_3975483_-	DUF3310 domain-containing protein	Q774Z7	Bordetella_phage	4.8e-10	55.2
WP_061405618.1\|3975501_3976254_-	putative phage exonuclease	A0A2R2ZGE9	Ralstonia_phage	1.7e-82	59.6
WP_064590830.1\|3976202_3976412_-	hypothetical protein	NA	NA	NA	NA
WP_009682626.1\|3976446_3976662_-	hypothetical protein	A0A2R2ZGG1	Ralstonia_phage	1.6e-17	67.2
WP_064590832.1\|3976675_3978727_-	DNA polymerase	A0A2R2ZGG6	Ralstonia_phage	5.2e-219	58.6
WP_064590834.1\|3978738_3978933_-	hypothetical protein	NA	NA	NA	NA
WP_064590835.1\|3978922_3979528_-	hypothetical protein	A0A2D2W501	Ralstonia_phage	2.9e-45	56.2
WP_155952727.1\|3979543_3979711_-	hypothetical protein	NA	NA	NA	NA
WP_148661758.1\|3979767_3979962_-	hypothetical protein	NA	NA	NA	NA
WP_064590837.1\|3979965_3980415_-	hypothetical protein	NA	NA	NA	NA
WP_028692660.1\|3980418_3980646_-	hypothetical protein	NA	NA	NA	NA
WP_158515033.1\|3980660_3982112_-	toprim domain-containing protein	L7TLT7	Rhizobium_phage	1.1e-178	62.7
WP_064590841.1\|3982383_3982833_-	N-acetylmuramoyl-L-alanine amidase	A0A2R2ZGC0	Ralstonia_phage	1.1e-62	73.0
WP_064590843.1\|3982835_3983261_-	endodeoxyribonuclease	A0A2D2W4Y6	Ralstonia_phage	2.1e-50	71.0
WP_028692663.1\|3983283_3983997_-	single-stranded DNA-binding protein	A0A2R2ZGF7	Ralstonia_phage	7.9e-66	62.2
WP_009682639.1\|3984024_3984201_-	hypothetical protein	A0A2D2W4Y9	Ralstonia_phage	8.2e-09	58.3
WP_064590845.1\|3984722_3987281_-	DNA-dependent RNA polymerase	A0A2R2ZGE5	Ralstonia_phage	0.0e+00	64.9
WP_003250234.1\|3988433_3989288_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.4e-29	34.6

DBSCAN-SWA_11

5174823 : 5255896

Pseudomonas_phage(40.0%)

terminase,capsid,tRNA,protease,holin,integrase,portal,tail,head

attL 5178948:5178965|attR 5260161:5260178

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012053746.1\|5174823_5175741_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_003249967.1\|5175744_5176143_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_004575779.1\|5176259_5178800_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	2.9e-22	23.2
WP_003249963.1\|5178827_5180309_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
5178948:5178965	attL	NA	NA	NA	NA
WP_003249960.1\|5180368_5180827_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_003249958.1\|5181240_5181639_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_003249956.1\|5181643_5182399_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_012053747.1\|5182464_5183805_-	phosphoglucosamine mutase	NA	NA	NA	NA
WP_012053748.1\|5183821_5184673_-	dihydropteroate synthase	NA	NA	NA	NA
WP_012053749.1\|5184681_5186586_-\|protease	ATP-dependent zinc metalloprotease FtsH	I3UL75	Ostreococcus_lucimarinus_virus	1.2e-113	47.8
WP_003249947.1\|5186792_5187416_-	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
WP_003249945.1\|5187518_5187827_+	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA
WP_012053750.1\|5187839_5188289_-	hypothetical protein	NA	NA	NA	NA
WP_003249939.1\|5188266_5188749_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_003249937.1\|5188745_5191967_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_003249935.1\|5192072_5193209_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.1e-44	32.0
WP_012053753.1\|5193535_5194339_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_003249931.1\|5194352_5195477_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.2e-23	35.6
WP_010955366.1\|5195674_5197600_-	molecular chaperone DnaK	A0A2P1EIW2	Megavirus	3.7e-150	49.4
WP_012053755.1\|5197701_5198259_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004575778.1\|5198451_5200125_+	DNA repair protein RecN	NA	NA	NA	NA
WP_003249922.1\|5200443_5200848_-	ferric iron uptake transcriptional regulator	NA	NA	NA	NA
WP_003249918.1\|5200945_5201482_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_014592414.1\|5201545_5201980_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_003249914.1\|5202143_5202626_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.2e-25	42.7
WP_003249911.1\|5202758_5203526_-	FCD domain-containing protein	NA	NA	NA	NA
WP_003249910.1\|5203782_5205453_+	lactate permease LctP family transporter	NA	NA	NA	NA
WP_014754483.1\|5205515_5206661_+	FMN-dependent L-lactate dehydrogenase LldD	NA	NA	NA	NA
WP_014754484.1\|5206736_5209547_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_014754485.1\|5210171_5210462_+	hypothetical protein	NA	NA	NA	NA
WP_125855627.1\|5211156_5211444_+	transcriptional regulator	NA	NA	NA	NA
WP_064590890.1\|5211440_5211806_+	hypothetical protein	NA	NA	NA	NA
WP_050492245.1\|5211823_5212108_-	hypothetical protein	H2BDA1	Pseudomonas_phage	1.3e-19	63.1
WP_064590892.1\|5212104_5212488_-	hypothetical protein	J7HXL1	Pseudomonas_phage	1.8e-24	54.2
WP_017147738.1\|5212484_5212931_-	structural protein	A0A2R3UAM8	Myoviridae_environmental_samples	7.2e-33	53.4
WP_024718023.1\|5212991_5213216_-	hypothetical protein	NA	NA	NA	NA
WP_148661763.1\|5213233_5214088_-	hypothetical protein	NA	NA	NA	NA
WP_081272926.1\|5214489_5220903_-	DUF1983 domain-containing protein	A0A2H4J0B1	uncultured_Caudovirales_phage	0.0e+00	72.0
WP_029885594.1\|5221304_5221907_-	hypothetical protein	A0A2H4J0R3	uncultured_Caudovirales_phage	2.3e-103	87.0
WP_029885593.1\|5221906_5222491_-	hypothetical protein	A0A2H4IYI9	uncultured_Caudovirales_phage	2.6e-59	55.2
WP_029885592.1\|5222532_5225748_-\|tail	phage tail tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	1.4e-93	35.6
WP_125920177.1\|5225804_5226131_-	hypothetical protein	NA	NA	NA	NA
WP_029885590.1\|5226437_5226767_-	hypothetical protein	A0A2D1GNT5	Pseudomonas_phage	7.9e-29	62.4
WP_029885589.1\|5226779_5227277_-	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	1.1e-71	80.6
WP_029885588.1\|5227331_5227718_-	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	4.4e-55	85.9
WP_029885587.1\|5227710_5228211_-	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	4.0e-64	70.9
WP_009681825.1\|5228214_5228385_-	hypothetical protein	NA	NA	NA	NA
WP_029885586.1\|5228393_5228720_-\|head	phage head closure protein	A0A2D1GNG1	Pseudomonas_phage	5.2e-25	62.1
WP_029885585.1\|5228719_5229016_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	4.3e-34	71.7
WP_033744421.1\|5229016_5229268_-	hypothetical protein	NA	NA	NA	NA
WP_029885583.1\|5229319_5230522_-\|capsid	phage major capsid protein	A0A2H4J8D1	uncultured_Caudovirales_phage	4.0e-147	64.9
WP_029885582.1\|5230518_5231160_-\|head,protease	HK97 family phage prohead protease	A0A2H4JA51	uncultured_Caudovirales_phage	1.9e-87	76.4
WP_029885581.1\|5231146_5232361_-\|portal	phage portal protein	A0A2H4JFN7	uncultured_Caudovirales_phage	3.9e-166	71.4
WP_029885580.1\|5232363_5234049_-\|terminase	terminase large subunit	A0A2H4JDK9	uncultured_Caudovirales_phage	9.3e-259	83.4
WP_029885579.1\|5234048_5234594_-\|terminase	terminase	S4TNN3	Salmonella_phage	3.7e-15	35.1
WP_029885578.1\|5234749_5235385_-	HNH endonuclease	NA	NA	NA	NA
WP_029885577.1\|5235393_5235732_-	HNH endonuclease	B5WZZ4	Pseudomonas_phage	3.4e-27	51.9
WP_029885576.1\|5235731_5235950_-	hypothetical protein	NA	NA	NA	NA
WP_017147910.1\|5235949_5236231_-\|holin	phage holin family protein	A0A2H4J0H1	uncultured_Caudovirales_phage	1.3e-43	94.6
WP_029885575.1\|5236231_5236606_-	hypothetical protein	A0A2H4J7X6	uncultured_Caudovirales_phage	7.3e-63	96.0
WP_012313238.1\|5236855_5237365_-	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	2.2e-86	94.7
WP_024717999.1\|5237590_5237980_-	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	7.1e-37	57.0
WP_024717998.1\|5237976_5238264_-	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	5.8e-12	41.4
WP_029885940.1\|5238260_5238761_-	hypothetical protein	NA	NA	NA	NA
WP_029885939.1\|5238747_5240160_-	AAA family ATPase	A0A0A0YUG7	Pseudomonas_phage	8.0e-187	72.5
WP_064590896.1\|5240156_5240975_-	ATP-binding protein	A0A2H4J2L2	uncultured_Caudovirales_phage	1.6e-54	45.2
WP_064590898.1\|5240961_5241756_-	helix-turn-helix domain-containing protein	A0A1W6JTD5	Pseudomonas_phage	1.9e-44	54.2
WP_064590900.1\|5241752_5241983_-	hypothetical protein	NA	NA	NA	NA
WP_064590902.1\|5241979_5242630_-	hypothetical protein	NA	NA	NA	NA
WP_064590904.1\|5242623_5243397_-	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	9.9e-22	53.6
WP_029885932.1\|5243393_5243684_-	hypothetical protein	NA	NA	NA	NA
WP_033744516.1\|5243680_5243950_-	hypothetical protein	NA	NA	NA	NA
WP_029885930.1\|5243942_5244278_-	hypothetical protein	NA	NA	NA	NA
WP_064590906.1\|5244415_5244718_-	hypothetical protein	A0A2H4JF66	uncultured_Caudovirales_phage	4.6e-07	58.9
WP_029885928.1\|5244831_5245572_+	Cro/Cl family transcriptional regulator	A0A0H5BBV1	Pseudomonas_phage	5.0e-47	63.8
WP_029885927.1\|5245707_5246106_+	helix-turn-helix transcriptional regulator	A0A1W6JTA9	Pseudomonas_phage	1.9e-32	67.2
WP_029885926.1\|5246134_5246407_+	hypothetical protein	NA	NA	NA	NA
WP_029885925.1\|5246511_5247027_+	Rha family transcriptional regulator	A0A2D1GLJ3	Escherichia_phage	1.7e-25	37.9
WP_050492198.1\|5247126_5247480_+	carbon storage regulator	NA	NA	NA	NA
WP_033744511.1\|5247476_5248064_+	hypothetical protein	NA	NA	NA	NA
WP_029885923.1\|5248060_5248837_+	hypothetical protein	NA	NA	NA	NA
WP_029885922.1\|5248995_5250174_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	9.7e-178	80.5
WP_029885921.1\|5250157_5250706_+	hypothetical protein	NA	NA	NA	NA
WP_012053756.1\|5250976_5252233_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	2.2e-111	47.1
WP_012053757.1\|5253197_5254595_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_012053758.1\|5254578_5254938_+	hypothetical protein	NA	NA	NA	NA
WP_012053759.1\|5254915_5255896_+\|integrase	integrase domain-containing protein	NA	NA	NA	NA
5260161:5260178	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP015876

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection